14:27:13Started by upstream project "Trigger" build number 3414:27:13originally caused by:
14:27:13 Started by user devspace14:27:13Running as SYSTEM
14:27:13Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
14:27:13The recommended git tool is: NONE
14:27:13No credentials specified
14:27:13 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
14:27:13Fetching changes from the remote Git repository
14:27:14 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
14:27:14Fetching upstream changes from https://github.com/ome/openmicroscopy.git14:27:14 > git --version # timeout=10
14:27:14 > git --version # 'git version 2.52.0'
14:27:14 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:27:18 > git rev-parse origin/develop^{commit} # timeout=10
14:27:18Checking out Revision bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 (origin/develop)
14:27:18 > git config core.sparsecheckout # timeout=10
14:27:18 > git checkout -f bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=30
14:27:21Commit message: "Merge pull request #6464 from pwalczysko/pyramid-little-endian-test"
14:27:21 > git rev-list --no-walk bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=10
14:27:21Cleaning workspace
14:27:21 > git rev-parse --verify HEAD # timeout=10
14:27:21Resetting working tree
14:27:21 > git reset --hard # timeout=10
14:27:21 > git clean -fdx # timeout=10
14:27:21Copied 1 artifact from "OMERO-python-superbuild-build" build number 2114:27:21[OMERO-push] $ /bin/bash -xe /tmp/jenkins2134473458874604363.sh
14:27:21+ python3.11 -mvenv venv
14:27:24+ source /home/omero/workspace/OMERO-push/venv/bin/activate
14:27:24++ deactivate nondestructive
14:27:24++ '[' -n '' ']'
14:27:24++ '[' -n '' ']'
14:27:24++ hash -r
14:27:24++ '[' -n '' ']'
14:27:24++ unset VIRTUAL_ENV
14:27:24++ unset VIRTUAL_ENV_PROMPT
14:27:24++ '[' '!' nondestructive = nondestructive ']'
14:27:24++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
14:27:24++ export VIRTUAL_ENV
14:27:24++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:27:24++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:27:24++ export PATH
14:27:24++ '[' -n '' ']'
14:27:24++ '[' -z '' ']'
14:27:24++ _OLD_VIRTUAL_PS1=
14:27:24++ PS1='(venv) '
14:27:24++ export PS1
14:27:24++ VIRTUAL_ENV_PROMPT='(venv) '
14:27:24++ export VIRTUAL_ENV_PROMPT
14:27:24++ hash -r
14:27:24+ pip install -U pip
14:27:26Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2)
14:27:26+ pip install -U scc
14:27:27Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
14:27:27Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
14:27:27Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
14:27:27Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
14:27:27Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
14:27:27Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
14:27:27Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
14:27:27Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
14:27:27Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
14:27:27Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
14:27:27Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
14:27:27Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
14:27:27Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
14:27:27Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
14:27:27Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
14:27:27Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
14:27:27Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
14:27:27Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
14:27:27Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
14:27:27+ test -e src
14:27:27+ cd src
14:27:27++ git config github.user
14:27:27+ user=snoopycrimecop
14:27:27+ scc merge develop --no-ask --reset --shallow -S success-only
14:27:342026-07-28 14:27:34,294 [ scc.merge] INFO Merging Pull Request(s) based on develop
14:27:342026-07-28 14:27:34,294 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
14:27:342026-07-28 14:27:34,294 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
14:27:342026-07-28 14:27:34,294 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
14:27:342026-07-28 14:27:34,294 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
14:27:342026-07-28 14:27:34,294 [ scc.merge] INFO Excluding Pull Request(s) without successful status
14:28:082026-07-28 14:28:08,723 [ scc.merge] INFO Repository: ome/openmicroscopy
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO Excluded PRs:
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6460 knabar 'Tests for new public URL filter setting' (status: failure)
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO Already up to date.
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO Merged PRs:
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO - PR 6471 pwalczysko 'Rewrite pyramid tests'
14:28:082026-07-28 14:28:08,724 [ scc.merge] INFO
14:28:08+ cp etc/omero.properties etc/omero.properties.bak
14:28:08+ rm etc/omero.properties
14:28:08+ touch etc/omero.properties
14:28:08++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
14:28:08+ ne=249
14:28:08++ sed -n 1,249p etc/omero.properties.bak
14:28:08+ line='##
14:28:08## omero.properties
14:28:08## ----------------
14:28:08##
14:28:08## DO NOT EDIT!
14:28:08##
14:28:08##
14:28:08## Any of these properties can be altered by using `omero config`. MODIFYING
14:28:08## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
14:28:08## at compile time!
14:28:08##
14:28:08## For an overview of these properties, see
14:28:08## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html14:28:08##
14:28:08## Properties marked with "DEVELOPMENT" should not be used in production.
14:28:0814:28:08# Comma separated list of Ice transports available to clients. The default
14:28:08# value ("ssl,tcp") instructs Ice to open the ports specified by the
14:28:08# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
14:28:08# will prevent all non-encrypted connections to the OMERO server.
14:28:08#
14:28:08# Additionally, there are two experimental values for using websockets:
14:28:08# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
14:28:08# that are opened are controlled by the omero.ports.ws and omero.ports.wss
14:28:08# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
14:28:08#
14:28:08# Note: When using websockets behind a web server like nginx, additional
14:28:08# configuration may be needed.
14:28:08omero.client.icetransports=ssl,tcp
14:28:0814:28:08# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
14:28:08# server
14:28:08omero.ports.prefix=
14:28:0814:28:08# The Glacier2 SSL port number to use
14:28:08omero.ports.ssl=4064
14:28:0814:28:08# The Glacier2 TCP port number to use (unencrypted)
14:28:08omero.ports.tcp=4063
14:28:0814:28:08# The Glacier2 WSS port number to use
14:28:08omero.ports.wss=4066
14:28:0814:28:08# The Glacier2 WS port number to use (unencrypted)
14:28:08omero.ports.ws=4065
14:28:0814:28:08# The IceGrid registry port number to use
14:28:08omero.ports.registry=4061
14:28:0814:28:08#############################################
14:28:08## JVM configuration
14:28:08##
14:28:08## Note: changes to the omero.jvmcfg properties
14:28:08## will *not* be reflected in OMERO.server
14:28:08## since they are defined in OMERO.py.
14:28:08#############################################
14:28:08## (For documentation only)
14:28:08# Memory strategy which will be used by default.
14:28:08# Options include: percent, manual
14:28:08omero.jvmcfg.strategy=percent
14:28:0814:28:08## (For documentation only)
14:28:08# Explicit value for the `-Xmx` argument, e.g.
14:28:08# "1g"
14:28:08omero.jvmcfg.heap_size=
14:28:0814:28:08## (For documentation only)
14:28:08# Explicit value for the MaxPermSize argument
14:28:08# to the JVM, e.g. "500M". Ignored for Java8+
14:28:08omero.jvmcfg.perm_gen=
14:28:0814:28:08## (For documentation only)
14:28:08# Toggles on or off heap dumps on OOMs. Default is "off".
14:28:08# The special value "tmp" will create the heap dumps in
14:28:08# your temp directory.
14:28:08omero.jvmcfg.heap_dump=
14:28:0814:28:08## (For documentation only)
14:28:08# Used only by the percent strategy. An integer between 0
14:28:08# and 100 which is the percent of active memory that will
14:28:08# be used by the service.
14:28:08omero.jvmcfg.percent=
14:28:0814:28:08## (For documentation only)
14:28:08# Contains other parameters which should be passed to the
14:28:08# JVM. The value of "append" is treated as if it were on
14:28:08# the command line so will be separated on whitespace.
14:28:08# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
14:28:08# results in two new arguments.
14:28:08# Note that when using `config set` from the command line
14:28:08# one may need to give a prior `--` option to prevent a value
14:28:08# starting with `-` from already being parsed as an option,
14:28:08# and values may need quoting to prevent whitespace or other
14:28:08# significant characters from being interpreted prematurely.
14:28:0814:28:08omero.jvmcfg.append=
14:28:0814:28:08## (For documentation only)
14:28:08# Manual override of the total system memory that
14:28:08# OMERO will *think* is present on the local OS (MB).
14:28:08# If unset, an attempt will be made to detect the actual
14:28:08# amount: first by using the Python library `psutil` and
14:28:08# if that is not installed, by running a Java tool. If
14:28:08# neither works, 4.0GB is assumed.
14:28:08omero.jvmcfg.system_memory=
14:28:0814:28:08## (For documentation only)
14:28:08# Suggestion for strategies as to the minimum memory
14:28:08# that they will use for calculating JVM settings (MB).
14:28:08omero.jvmcfg.min_system_memory=3414
14:28:0814:28:08## (For documentation only)
14:28:08# Suggestion for strategies as to the maximum memory
14:28:08# that they will use for calculating JVM settings (MB).
14:28:08omero.jvmcfg.max_system_memory=48000
14:28:0814:28:0814:28:08#############################################
14:28:08## Logging properties
14:28:08##
14:28:08## Note: changes to the default omero.logging values in
14:28:08## this file will *not* be reflected in OMERO.server
14:28:08## since they are defined in OMERO.py
14:28:08#############################################
14:28:0814:28:08## (For documentation only)
14:28:08# Relative server directory where the log files should be stored.
14:28:08omero.logging.directory=var/log/
14:28:0814:28:08## (For documentation only)
14:28:08# Whether the server log files should be rotated at a certain time
14:28:08# interval. If true, log files will be rolled over at midnight.
14:28:08# Otherwise, log files will be rolled over at a predetermined size,
14:28:08# see omero.logging.logsize for more information.
14:28:08omero.logging.timedlog=false
14:28:0814:28:08## (For documentation only)
14:28:08# If omero.logging.timedlog is false or unset, specifies the
14:28:08# maximum size of the server log files in bytes above which a
14:28:08# new log file should be created.
14:28:08omero.logging.logsize=5000000
14:28:0814:28:08## (For documentation only)
14:28:08# If omero.logging.timedlog is false or unset, specifies the
14:28:08# number of old server log files that should be kept. Old log
14:28:08# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
14:28:08omero.logging.lognum=9
14:28:0814:28:08## (For documentation only)
14:28:08# Specifies the threshold for the Python servers log files. Logging messages
14:28:08# which are less severe than this value will be ignored. For a list of
14:28:08# available values, see https://docs.python.org/3/library/logging.html#levels.
14:28:08omero.logging.level=20
14:28:0814:28:08#############################################
14:28:08## Ice overrides
14:28:08##
14:28:08## Though not used directly by OMERO, a number
14:28:08## of properties prefixed with "Ice.*" will
14:28:08## alter the behavior of the OMERO runtime
14:28:08## by configuring the Ice communicators. For a
14:28:08## full listing see:
14:28:08##
14:28:08## http://doc.zeroc.com/display/Ice/Property+Reference14:28:08## For more information see
14:28:08## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start14:28:08#############################################
14:28:0814:28:08# Disable IPv6 by setting to 0. Only needed in
14:28:08# certain situations.
14:28:08Ice.IPv6=1
14:28:0814:28:08# Glacier2Template IceSSL defaults and overrides,
14:28:08# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
14:28:08# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
14:28:08# update the corresponding IceSSL. property.
14:28:08omero.glacier2.IceSSL=
14:28:0814:28:08# Glacier2Template SSL maximum allowed protocol (mac bug)
14:28:08omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
14:28:08# Glacier2Template SSL allowed cipher suites
14:28:08omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
14:28:08# Glacier2Template SSL verification requirements
14:28:08omero.glacier2.IceSSL.VerifyPeer=0
14:28:08# Glacier2Template SSL allowed protocols
14:28:08omero.glacier2.IceSSL.Protocols=tls1
14:28:0814:28:08# Override the default set of OMERO services.
14:28:08# For example, to run OMERO.server with Blitz and Tables only
14:28:08# (i.e. disable Processor, DropBox, Indexer, PixelData)
14:28:08# set this to ``master:Blitz-0,Tables-0``.
14:28:08# Also use this to distribute OMERO services across multiple nodes,
14:28:08# for example:
14:28:08# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
14:28:08# See
14:28:08# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples14:28:08omero.server.nodedescriptors=
14:28:0814:28:08#############################################
14:28:08## Darwin (OS X) specific defaults for templated configuration files only.
14:28:08## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
14:28:08## file.
14:28:08## Do not set these properties in ``omero config``, instead set the original
14:28:08## ``xxx.yyy`` property
14:28:08#############################################
14:28:08_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
14:28:0814:28:08## (For documentation only)
14:28:08# Name of the Python module to use when starting the Tables service
14:28:08omero.tables.module=runTables
14:28:0814:28:08#############################################
14:28:08## Server product name for release artifacts
14:28:08#############################################
14:28:08product.name=OMERO.server
14:28:0814:28:08#############################################
14:28:08### Properties below this marker are ignored by
14:28:08### omero.install.config_parser.PropertyParser
14:28:08### END
14:28:0814:28:08#############################################
14:28:08## Library versions
14:28:08#############################################
14:28:08##
14:28:08versions.findbugs=1.2.1
14:28:08versions.ice36=3.6.5
14:28:08versions.ice36_lib=36
14:28:08## internal
14:28:08versions.omeroshares36=3.6.3
14:28:08versions.omeromock36=3.6.3
14:28:08versions.icedb36=3.6.3
14:28:08versions.ipython=1.2.1
14:28:0814:28:08versions.janino=2.5.10
14:28:0814:28:08versions.reportng=1.1.1
14:28:0814:28:08versions.testng=7.5
14:28:08versions.velocity=1.4
14:28:0814:28:08versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE14:28:08versions.omero-scripts-url=${versions.omero-pypi}
14:28:0814:28:08###
14:28:08### Appended Values
14:28:08###
14:28:0814:28:08## Internal dependencies'
14:28:08+ echo '##
14:28:08## omero.properties
14:28:08## ----------------
14:28:08##
14:28:08## DO NOT EDIT!
14:28:08##
14:28:08##
14:28:08## Any of these properties can be altered by using `omero config`. MODIFYING
14:28:08## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
14:28:08## at compile time!
14:28:08##
14:28:08## For an overview of these properties, see
14:28:08## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html14:28:08##
14:28:08## Properties marked with "DEVELOPMENT" should not be used in production.
14:28:0814:28:08# Comma separated list of Ice transports available to clients. The default
14:28:08# value ("ssl,tcp") instructs Ice to open the ports specified by the
14:28:08# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
14:28:08# will prevent all non-encrypted connections to the OMERO server.
14:28:08#
14:28:08# Additionally, there are two experimental values for using websockets:
14:28:08# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
14:28:08# that are opened are controlled by the omero.ports.ws and omero.ports.wss
14:28:08# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
14:28:08#
14:28:08# Note: When using websockets behind a web server like nginx, additional
14:28:08# configuration may be needed.
14:28:08omero.client.icetransports=ssl,tcp
14:28:0814:28:08# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
14:28:08# server
14:28:08omero.ports.prefix=
14:28:0814:28:08# The Glacier2 SSL port number to use
14:28:08omero.ports.ssl=4064
14:28:0814:28:08# The Glacier2 TCP port number to use (unencrypted)
14:28:08omero.ports.tcp=4063
14:28:0814:28:08# The Glacier2 WSS port number to use
14:28:08omero.ports.wss=4066
14:28:0814:28:08# The Glacier2 WS port number to use (unencrypted)
14:28:08omero.ports.ws=4065
14:28:0814:28:08# The IceGrid registry port number to use
14:28:08omero.ports.registry=4061
14:28:0814:28:08#############################################
14:28:08## JVM configuration
14:28:08##
14:28:08## Note: changes to the omero.jvmcfg properties
14:28:08## will *not* be reflected in OMERO.server
14:28:08## since they are defined in OMERO.py.
14:28:08#############################################
14:28:08## (For documentation only)
14:28:08# Memory strategy which will be used by default.
14:28:08# Options include: percent, manual
14:28:08omero.jvmcfg.strategy=percent
14:28:0814:28:08## (For documentation only)
14:28:08# Explicit value for the `-Xmx` argument, e.g.
14:28:08# "1g"
14:28:08omero.jvmcfg.heap_size=
14:28:0814:28:08## (For documentation only)
14:28:08# Explicit value for the MaxPermSize argument
14:28:08# to the JVM, e.g. "500M". Ignored for Java8+
14:28:08omero.jvmcfg.perm_gen=
14:28:0814:28:08## (For documentation only)
14:28:08# Toggles on or off heap dumps on OOMs. Default is "off".
14:28:08# The special value "tmp" will create the heap dumps in
14:28:08# your temp directory.
14:28:08omero.jvmcfg.heap_dump=
14:28:0814:28:08## (For documentation only)
14:28:08# Used only by the percent strategy. An integer between 0
14:28:08# and 100 which is the percent of active memory that will
14:28:08# be used by the service.
14:28:08omero.jvmcfg.percent=
14:28:0814:28:08## (For documentation only)
14:28:08# Contains other parameters which should be passed to the
14:28:08# JVM. The value of "append" is treated as if it were on
14:28:08# the command line so will be separated on whitespace.
14:28:08# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
14:28:08# results in two new arguments.
14:28:08# Note that when using `config set` from the command line
14:28:08# one may need to give a prior `--` option to prevent a value
14:28:08# starting with `-` from already being parsed as an option,
14:28:08# and values may need quoting to prevent whitespace or other
14:28:08# significant characters from being interpreted prematurely.
14:28:0814:28:08omero.jvmcfg.append=
14:28:0814:28:08## (For documentation only)
14:28:08# Manual override of the total system memory that
14:28:08# OMERO will *think* is present on the local OS (MB).
14:28:08# If unset, an attempt will be made to detect the actual
14:28:08# amount: first by using the Python library `psutil` and
14:28:08# if that is not installed, by running a Java tool. If
14:28:08# neither works, 4.0GB is assumed.
14:28:08omero.jvmcfg.system_memory=
14:28:0814:28:08## (For documentation only)
14:28:08# Suggestion for strategies as to the minimum memory
14:28:08# that they will use for calculating JVM settings (MB).
14:28:08omero.jvmcfg.min_system_memory=3414
14:28:0814:28:08## (For documentation only)
14:28:08# Suggestion for strategies as to the maximum memory
14:28:08# that they will use for calculating JVM settings (MB).
14:28:08omero.jvmcfg.max_system_memory=48000
14:28:0814:28:0814:28:08#############################################
14:28:08## Logging properties
14:28:08##
14:28:08## Note: changes to the default omero.logging values in
14:28:08## this file will *not* be reflected in OMERO.server
14:28:08## since they are defined in OMERO.py
14:28:08#############################################
14:28:0814:28:08## (For documentation only)
14:28:08# Relative server directory where the log files should be stored.
14:28:08omero.logging.directory=var/log/
14:28:0814:28:08## (For documentation only)
14:28:08# Whether the server log files should be rotated at a certain time
14:28:08# interval. If true, log files will be rolled over at midnight.
14:28:08# Otherwise, log files will be rolled over at a predetermined size,
14:28:08# see omero.logging.logsize for more information.
14:28:08omero.logging.timedlog=false
14:28:0814:28:08## (For documentation only)
14:28:08# If omero.logging.timedlog is false or unset, specifies the
14:28:08# maximum size of the server log files in bytes above which a
14:28:08# new log file should be created.
14:28:08omero.logging.logsize=5000000
14:28:0814:28:08## (For documentation only)
14:28:08# If omero.logging.timedlog is false or unset, specifies the
14:28:08# number of old server log files that should be kept. Old log
14:28:08# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
14:28:08omero.logging.lognum=9
14:28:0814:28:08## (For documentation only)
14:28:08# Specifies the threshold for the Python servers log files. Logging messages
14:28:08# which are less severe than this value will be ignored. For a list of
14:28:08# available values, see https://docs.python.org/3/library/logging.html#levels.
14:28:08omero.logging.level=20
14:28:0814:28:08#############################################
14:28:08## Ice overrides
14:28:08##
14:28:08## Though not used directly by OMERO, a number
14:28:08## of properties prefixed with "Ice.*" will
14:28:08## alter the behavior of the OMERO runtime
14:28:08## by configuring the Ice communicators. For a
14:28:08## full listing see:
14:28:08##
14:28:08## http://doc.zeroc.com/display/Ice/Property+Reference14:28:08## For more information see
14:28:08## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start14:28:08#############################################
14:28:0814:28:08# Disable IPv6 by setting to 0. Only needed in
14:28:08# certain situations.
14:28:08Ice.IPv6=1
14:28:0814:28:08# Glacier2Template IceSSL defaults and overrides,
14:28:08# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
14:28:08# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
14:28:08# update the corresponding IceSSL. property.
14:28:08omero.glacier2.IceSSL=
14:28:0814:28:08# Glacier2Template SSL maximum allowed protocol (mac bug)
14:28:08omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
14:28:08# Glacier2Template SSL allowed cipher suites
14:28:08omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
14:28:08# Glacier2Template SSL verification requirements
14:28:08omero.glacier2.IceSSL.VerifyPeer=0
14:28:08# Glacier2Template SSL allowed protocols
14:28:08omero.glacier2.IceSSL.Protocols=tls1
14:28:0814:28:08# Override the default set of OMERO services.
14:28:08# For example, to run OMERO.server with Blitz and Tables only
14:28:08# (i.e. disable Processor, DropBox, Indexer, PixelData)
14:28:08# set this to ``master:Blitz-0,Tables-0``.
14:28:08# Also use this to distribute OMERO services across multiple nodes,
14:28:08# for example:
14:28:08# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
14:28:08# See
14:28:08# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples14:28:08omero.server.nodedescriptors=
14:28:0814:28:08#############################################
14:28:08## Darwin (OS X) specific defaults for templated configuration files only.
14:28:08## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
14:28:08## file.
14:28:08## Do not set these properties in ``omero config``, instead set the original
14:28:08## ``xxx.yyy`` property
14:28:08#############################################
14:28:08_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
14:28:0814:28:08## (For documentation only)
14:28:08# Name of the Python module to use when starting the Tables service
14:28:08omero.tables.module=runTables
14:28:0814:28:08#############################################
14:28:08## Server product name for release artifacts
14:28:08#############################################
14:28:08product.name=OMERO.server
14:28:0814:28:08#############################################
14:28:08### Properties below this marker are ignored by
14:28:08### omero.install.config_parser.PropertyParser
14:28:08### END
14:28:0814:28:08#############################################
14:28:08## Library versions
14:28:08#############################################
14:28:08##
14:28:08versions.findbugs=1.2.1
14:28:08versions.ice36=3.6.5
14:28:08versions.ice36_lib=36
14:28:08## internal
14:28:08versions.omeroshares36=3.6.3
14:28:08versions.omeromock36=3.6.3
14:28:08versions.icedb36=3.6.3
14:28:08versions.ipython=1.2.1
14:28:0814:28:08versions.janino=2.5.10
14:28:0814:28:08versions.reportng=1.1.1
14:28:0814:28:08versions.testng=7.5
14:28:08versions.velocity=1.4
14:28:0814:28:08versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE14:28:08versions.omero-scripts-url=${versions.omero-pypi}
14:28:0814:28:08###
14:28:08### Appended Values
14:28:08###
14:28:0814:28:08## Internal dependencies'
14:28:08+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/14:28:08+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive14:28:08+ echo versions.scripts-prefix=
14:28:08+ echo versions.scripts=merge_ci
14:28:08+ cat /home/omero/workspace/OMERO-push/version.properties
14:28:08+ git commit -a -m 'Add version.properties to etc/omero.properties'
14:28:09[detached HEAD f9a7f8ddff] Add version.properties to etc/omero.properties
14:28:09 1 file changed, 46 insertions(+), 6 deletions(-)
14:28:09+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
14:28:12To github.com:snoopycrimecop/openmicroscopy.git
14:28:12 + 1d697f848f...f9a7f8ddff HEAD -> merge_ci (forced update)
14:28:12Finished: SUCCESS
