11:48:57Started by user devspace11:48:57Running as SYSTEM
11:48:57Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
11:48:57The recommended git tool is: NONE
11:48:57No credentials specified
11:48:57 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
11:48:57Fetching changes from the remote Git repository
11:48:57 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
11:48:57Fetching upstream changes from https://github.com/ome/openmicroscopy.git11:48:57 > git --version # timeout=10
11:48:57 > git --version # 'git version 2.52.0'
11:48:57 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:49:00 > git rev-parse origin/develop^{commit} # timeout=10
11:49:00Checking out Revision bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 (origin/develop)
11:49:00 > git config core.sparsecheckout # timeout=10
11:49:00 > git checkout -f bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=30
11:49:16Commit message: "Merge pull request #6464 from pwalczysko/pyramid-little-endian-test"
11:49:16 > git rev-list --no-walk bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=10
11:49:16Cleaning workspace
11:49:16 > git rev-parse --verify HEAD # timeout=10
11:49:16Resetting working tree
11:49:16 > git reset --hard # timeout=10
11:49:17 > git clean -fdx # timeout=10
11:49:18Copied 1 artifact from "OMERO-python-superbuild-build" build number 2111:49:18[OMERO-push] $ /bin/bash -xe /tmp/jenkins16019648966653062711.sh
11:49:18+ python3.11 -mvenv venv
11:49:20+ source /home/omero/workspace/OMERO-push/venv/bin/activate
11:49:20++ deactivate nondestructive
11:49:20++ '[' -n '' ']'
11:49:20++ '[' -n '' ']'
11:49:20++ hash -r
11:49:20++ '[' -n '' ']'
11:49:20++ unset VIRTUAL_ENV
11:49:20++ unset VIRTUAL_ENV_PROMPT
11:49:20++ '[' '!' nondestructive = nondestructive ']'
11:49:20++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
11:49:20++ export VIRTUAL_ENV
11:49:20++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:49:20++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:49:20++ export PATH
11:49:20++ '[' -n '' ']'
11:49:20++ '[' -z '' ']'
11:49:20++ _OLD_VIRTUAL_PS1=
11:49:20++ PS1='(venv) '
11:49:20++ export PS1
11:49:20++ VIRTUAL_ENV_PROMPT='(venv) '
11:49:20++ export VIRTUAL_ENV_PROMPT
11:49:20++ hash -r
11:49:20+ pip install -U pip
11:49:24Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2)
11:49:24+ pip install -U scc
11:49:25Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
11:49:25Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
11:49:25Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
11:49:25Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
11:49:25Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
11:49:25Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
11:49:25Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
11:49:25Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
11:49:25Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
11:49:25Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
11:49:25Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
11:49:25Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
11:49:25Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
11:49:25Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
11:49:25Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
11:49:25Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
11:49:25Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
11:49:25Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
11:49:25Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
11:49:25+ test -e src
11:49:25+ cd src
11:49:25++ git config github.user
11:49:25+ user=snoopycrimecop
11:49:25+ scc merge develop --no-ask --reset --shallow -S success-only
11:49:352026-07-29 11:49:35,063 [ scc.merge] INFO Merging Pull Request(s) based on develop
11:49:352026-07-29 11:49:35,063 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
11:49:352026-07-29 11:49:35,063 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
11:49:352026-07-29 11:49:35,063 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
11:49:352026-07-29 11:49:35,063 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
11:49:352026-07-29 11:49:35,063 [ scc.merge] INFO Excluding Pull Request(s) without successful status
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO Repository: ome/openmicroscopy
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO Excluded PRs:
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO - PR 6471 pwalczysko 'Rewrite pyramid tests' (label: exclude)
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO Already up to date.
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO Merged PRs:
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
11:49:592026-07-29 11:49:59,916 [ scc.merge] INFO
11:49:59+ cp etc/omero.properties etc/omero.properties.bak
11:49:59+ rm etc/omero.properties
11:50:00+ touch etc/omero.properties
11:50:00++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
11:50:00+ ne=249
11:50:00++ sed -n 1,249p etc/omero.properties.bak
11:50:00+ line='##
11:50:00## omero.properties
11:50:00## ----------------
11:50:00##
11:50:00## DO NOT EDIT!
11:50:00##
11:50:00##
11:50:00## Any of these properties can be altered by using `omero config`. MODIFYING
11:50:00## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:50:00## at compile time!
11:50:00##
11:50:00## For an overview of these properties, see
11:50:00## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:50:00##
11:50:00## Properties marked with "DEVELOPMENT" should not be used in production.
11:50:0011:50:00# Comma separated list of Ice transports available to clients. The default
11:50:00# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:50:00# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:50:00# will prevent all non-encrypted connections to the OMERO server.
11:50:00#
11:50:00# Additionally, there are two experimental values for using websockets:
11:50:00# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:50:00# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:50:00# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:50:00#
11:50:00# Note: When using websockets behind a web server like nginx, additional
11:50:00# configuration may be needed.
11:50:00omero.client.icetransports=ssl,tcp
11:50:0011:50:00# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:50:00# server
11:50:00omero.ports.prefix=
11:50:0011:50:00# The Glacier2 SSL port number to use
11:50:00omero.ports.ssl=4064
11:50:0011:50:00# The Glacier2 TCP port number to use (unencrypted)
11:50:00omero.ports.tcp=4063
11:50:0011:50:00# The Glacier2 WSS port number to use
11:50:00omero.ports.wss=4066
11:50:0011:50:00# The Glacier2 WS port number to use (unencrypted)
11:50:00omero.ports.ws=4065
11:50:0011:50:00# The IceGrid registry port number to use
11:50:00omero.ports.registry=4061
11:50:0011:50:00#############################################
11:50:00## JVM configuration
11:50:00##
11:50:00## Note: changes to the omero.jvmcfg properties
11:50:00## will *not* be reflected in OMERO.server
11:50:00## since they are defined in OMERO.py.
11:50:00#############################################
11:50:00## (For documentation only)
11:50:00# Memory strategy which will be used by default.
11:50:00# Options include: percent, manual
11:50:00omero.jvmcfg.strategy=percent
11:50:0011:50:00## (For documentation only)
11:50:00# Explicit value for the `-Xmx` argument, e.g.
11:50:00# "1g"
11:50:00omero.jvmcfg.heap_size=
11:50:0011:50:00## (For documentation only)
11:50:00# Explicit value for the MaxPermSize argument
11:50:00# to the JVM, e.g. "500M". Ignored for Java8+
11:50:00omero.jvmcfg.perm_gen=
11:50:0011:50:00## (For documentation only)
11:50:00# Toggles on or off heap dumps on OOMs. Default is "off".
11:50:00# The special value "tmp" will create the heap dumps in
11:50:00# your temp directory.
11:50:00omero.jvmcfg.heap_dump=
11:50:0011:50:00## (For documentation only)
11:50:00# Used only by the percent strategy. An integer between 0
11:50:00# and 100 which is the percent of active memory that will
11:50:00# be used by the service.
11:50:00omero.jvmcfg.percent=
11:50:0011:50:00## (For documentation only)
11:50:00# Contains other parameters which should be passed to the
11:50:00# JVM. The value of "append" is treated as if it were on
11:50:00# the command line so will be separated on whitespace.
11:50:00# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:50:00# results in two new arguments.
11:50:00# Note that when using `config set` from the command line
11:50:00# one may need to give a prior `--` option to prevent a value
11:50:00# starting with `-` from already being parsed as an option,
11:50:00# and values may need quoting to prevent whitespace or other
11:50:00# significant characters from being interpreted prematurely.
11:50:0011:50:00omero.jvmcfg.append=
11:50:0011:50:00## (For documentation only)
11:50:00# Manual override of the total system memory that
11:50:00# OMERO will *think* is present on the local OS (MB).
11:50:00# If unset, an attempt will be made to detect the actual
11:50:00# amount: first by using the Python library `psutil` and
11:50:00# if that is not installed, by running a Java tool. If
11:50:00# neither works, 4.0GB is assumed.
11:50:00omero.jvmcfg.system_memory=
11:50:0011:50:00## (For documentation only)
11:50:00# Suggestion for strategies as to the minimum memory
11:50:00# that they will use for calculating JVM settings (MB).
11:50:00omero.jvmcfg.min_system_memory=3414
11:50:0011:50:00## (For documentation only)
11:50:00# Suggestion for strategies as to the maximum memory
11:50:00# that they will use for calculating JVM settings (MB).
11:50:00omero.jvmcfg.max_system_memory=48000
11:50:0011:50:0011:50:00#############################################
11:50:00## Logging properties
11:50:00##
11:50:00## Note: changes to the default omero.logging values in
11:50:00## this file will *not* be reflected in OMERO.server
11:50:00## since they are defined in OMERO.py
11:50:00#############################################
11:50:0011:50:00## (For documentation only)
11:50:00# Relative server directory where the log files should be stored.
11:50:00omero.logging.directory=var/log/
11:50:0011:50:00## (For documentation only)
11:50:00# Whether the server log files should be rotated at a certain time
11:50:00# interval. If true, log files will be rolled over at midnight.
11:50:00# Otherwise, log files will be rolled over at a predetermined size,
11:50:00# see omero.logging.logsize for more information.
11:50:00omero.logging.timedlog=false
11:50:0011:50:00## (For documentation only)
11:50:00# If omero.logging.timedlog is false or unset, specifies the
11:50:00# maximum size of the server log files in bytes above which a
11:50:00# new log file should be created.
11:50:00omero.logging.logsize=5000000
11:50:0011:50:00## (For documentation only)
11:50:00# If omero.logging.timedlog is false or unset, specifies the
11:50:00# number of old server log files that should be kept. Old log
11:50:00# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:50:00omero.logging.lognum=9
11:50:0011:50:00## (For documentation only)
11:50:00# Specifies the threshold for the Python servers log files. Logging messages
11:50:00# which are less severe than this value will be ignored. For a list of
11:50:00# available values, see https://docs.python.org/3/library/logging.html#levels.
11:50:00omero.logging.level=20
11:50:0011:50:00#############################################
11:50:00## Ice overrides
11:50:00##
11:50:00## Though not used directly by OMERO, a number
11:50:00## of properties prefixed with "Ice.*" will
11:50:00## alter the behavior of the OMERO runtime
11:50:00## by configuring the Ice communicators. For a
11:50:00## full listing see:
11:50:00##
11:50:00## http://doc.zeroc.com/display/Ice/Property+Reference11:50:00## For more information see
11:50:00## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:50:00#############################################
11:50:0011:50:00# Disable IPv6 by setting to 0. Only needed in
11:50:00# certain situations.
11:50:00Ice.IPv6=1
11:50:0011:50:00# Glacier2Template IceSSL defaults and overrides,
11:50:00# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:50:00# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:50:00# update the corresponding IceSSL. property.
11:50:00omero.glacier2.IceSSL=
11:50:0011:50:00# Glacier2Template SSL maximum allowed protocol (mac bug)
11:50:00omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:50:00# Glacier2Template SSL allowed cipher suites
11:50:00omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:50:00# Glacier2Template SSL verification requirements
11:50:00omero.glacier2.IceSSL.VerifyPeer=0
11:50:00# Glacier2Template SSL allowed protocols
11:50:00omero.glacier2.IceSSL.Protocols=tls1
11:50:0011:50:00# Override the default set of OMERO services.
11:50:00# For example, to run OMERO.server with Blitz and Tables only
11:50:00# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:50:00# set this to ``master:Blitz-0,Tables-0``.
11:50:00# Also use this to distribute OMERO services across multiple nodes,
11:50:00# for example:
11:50:00# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:50:00# See
11:50:00# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:50:00omero.server.nodedescriptors=
11:50:0011:50:00#############################################
11:50:00## Darwin (OS X) specific defaults for templated configuration files only.
11:50:00## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:50:00## file.
11:50:00## Do not set these properties in ``omero config``, instead set the original
11:50:00## ``xxx.yyy`` property
11:50:00#############################################
11:50:00_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:50:0011:50:00## (For documentation only)
11:50:00# Name of the Python module to use when starting the Tables service
11:50:00omero.tables.module=runTables
11:50:0011:50:00#############################################
11:50:00## Server product name for release artifacts
11:50:00#############################################
11:50:00product.name=OMERO.server
11:50:0011:50:00#############################################
11:50:00### Properties below this marker are ignored by
11:50:00### omero.install.config_parser.PropertyParser
11:50:00### END
11:50:0011:50:00#############################################
11:50:00## Library versions
11:50:00#############################################
11:50:00##
11:50:00versions.findbugs=1.2.1
11:50:00versions.ice36=3.6.5
11:50:00versions.ice36_lib=36
11:50:00## internal
11:50:00versions.omeroshares36=3.6.3
11:50:00versions.omeromock36=3.6.3
11:50:00versions.icedb36=3.6.3
11:50:00versions.ipython=1.2.1
11:50:0011:50:00versions.janino=2.5.10
11:50:0011:50:00versions.reportng=1.1.1
11:50:0011:50:00versions.testng=7.5
11:50:00versions.velocity=1.4
11:50:0011:50:00versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:50:00versions.omero-scripts-url=${versions.omero-pypi}
11:50:0011:50:00###
11:50:00### Appended Values
11:50:00###
11:50:0011:50:00## Internal dependencies'
11:50:00+ echo '##
11:50:00## omero.properties
11:50:00## ----------------
11:50:00##
11:50:00## DO NOT EDIT!
11:50:00##
11:50:00##
11:50:00## Any of these properties can be altered by using `omero config`. MODIFYING
11:50:00## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:50:00## at compile time!
11:50:00##
11:50:00## For an overview of these properties, see
11:50:00## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:50:00##
11:50:00## Properties marked with "DEVELOPMENT" should not be used in production.
11:50:0011:50:00# Comma separated list of Ice transports available to clients. The default
11:50:00# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:50:00# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:50:00# will prevent all non-encrypted connections to the OMERO server.
11:50:00#
11:50:00# Additionally, there are two experimental values for using websockets:
11:50:00# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:50:00# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:50:00# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:50:00#
11:50:00# Note: When using websockets behind a web server like nginx, additional
11:50:00# configuration may be needed.
11:50:00omero.client.icetransports=ssl,tcp
11:50:0011:50:00# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:50:00# server
11:50:00omero.ports.prefix=
11:50:0011:50:00# The Glacier2 SSL port number to use
11:50:00omero.ports.ssl=4064
11:50:0011:50:00# The Glacier2 TCP port number to use (unencrypted)
11:50:00omero.ports.tcp=4063
11:50:0011:50:00# The Glacier2 WSS port number to use
11:50:00omero.ports.wss=4066
11:50:0011:50:00# The Glacier2 WS port number to use (unencrypted)
11:50:00omero.ports.ws=4065
11:50:0011:50:00# The IceGrid registry port number to use
11:50:00omero.ports.registry=4061
11:50:0011:50:00#############################################
11:50:00## JVM configuration
11:50:00##
11:50:00## Note: changes to the omero.jvmcfg properties
11:50:00## will *not* be reflected in OMERO.server
11:50:00## since they are defined in OMERO.py.
11:50:00#############################################
11:50:00## (For documentation only)
11:50:00# Memory strategy which will be used by default.
11:50:00# Options include: percent, manual
11:50:00omero.jvmcfg.strategy=percent
11:50:0011:50:00## (For documentation only)
11:50:00# Explicit value for the `-Xmx` argument, e.g.
11:50:00# "1g"
11:50:00omero.jvmcfg.heap_size=
11:50:0011:50:00## (For documentation only)
11:50:00# Explicit value for the MaxPermSize argument
11:50:00# to the JVM, e.g. "500M". Ignored for Java8+
11:50:00omero.jvmcfg.perm_gen=
11:50:0011:50:00## (For documentation only)
11:50:00# Toggles on or off heap dumps on OOMs. Default is "off".
11:50:00# The special value "tmp" will create the heap dumps in
11:50:00# your temp directory.
11:50:00omero.jvmcfg.heap_dump=
11:50:0011:50:00## (For documentation only)
11:50:00# Used only by the percent strategy. An integer between 0
11:50:00# and 100 which is the percent of active memory that will
11:50:00# be used by the service.
11:50:00omero.jvmcfg.percent=
11:50:0011:50:00## (For documentation only)
11:50:00# Contains other parameters which should be passed to the
11:50:00# JVM. The value of "append" is treated as if it were on
11:50:00# the command line so will be separated on whitespace.
11:50:00# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:50:00# results in two new arguments.
11:50:00# Note that when using `config set` from the command line
11:50:00# one may need to give a prior `--` option to prevent a value
11:50:00# starting with `-` from already being parsed as an option,
11:50:00# and values may need quoting to prevent whitespace or other
11:50:00# significant characters from being interpreted prematurely.
11:50:0011:50:00omero.jvmcfg.append=
11:50:0011:50:00## (For documentation only)
11:50:00# Manual override of the total system memory that
11:50:00# OMERO will *think* is present on the local OS (MB).
11:50:00# If unset, an attempt will be made to detect the actual
11:50:00# amount: first by using the Python library `psutil` and
11:50:00# if that is not installed, by running a Java tool. If
11:50:00# neither works, 4.0GB is assumed.
11:50:00omero.jvmcfg.system_memory=
11:50:0011:50:00## (For documentation only)
11:50:00# Suggestion for strategies as to the minimum memory
11:50:00# that they will use for calculating JVM settings (MB).
11:50:00omero.jvmcfg.min_system_memory=3414
11:50:0011:50:00## (For documentation only)
11:50:00# Suggestion for strategies as to the maximum memory
11:50:00# that they will use for calculating JVM settings (MB).
11:50:00omero.jvmcfg.max_system_memory=48000
11:50:0011:50:0011:50:00#############################################
11:50:00## Logging properties
11:50:00##
11:50:00## Note: changes to the default omero.logging values in
11:50:00## this file will *not* be reflected in OMERO.server
11:50:00## since they are defined in OMERO.py
11:50:00#############################################
11:50:0011:50:00## (For documentation only)
11:50:00# Relative server directory where the log files should be stored.
11:50:00omero.logging.directory=var/log/
11:50:0011:50:00## (For documentation only)
11:50:00# Whether the server log files should be rotated at a certain time
11:50:00# interval. If true, log files will be rolled over at midnight.
11:50:00# Otherwise, log files will be rolled over at a predetermined size,
11:50:00# see omero.logging.logsize for more information.
11:50:00omero.logging.timedlog=false
11:50:0011:50:00## (For documentation only)
11:50:00# If omero.logging.timedlog is false or unset, specifies the
11:50:00# maximum size of the server log files in bytes above which a
11:50:00# new log file should be created.
11:50:00omero.logging.logsize=5000000
11:50:0011:50:00## (For documentation only)
11:50:00# If omero.logging.timedlog is false or unset, specifies the
11:50:00# number of old server log files that should be kept. Old log
11:50:00# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:50:00omero.logging.lognum=9
11:50:0011:50:00## (For documentation only)
11:50:00# Specifies the threshold for the Python servers log files. Logging messages
11:50:00# which are less severe than this value will be ignored. For a list of
11:50:00# available values, see https://docs.python.org/3/library/logging.html#levels.
11:50:00omero.logging.level=20
11:50:0011:50:00#############################################
11:50:00## Ice overrides
11:50:00##
11:50:00## Though not used directly by OMERO, a number
11:50:00## of properties prefixed with "Ice.*" will
11:50:00## alter the behavior of the OMERO runtime
11:50:00## by configuring the Ice communicators. For a
11:50:00## full listing see:
11:50:00##
11:50:00## http://doc.zeroc.com/display/Ice/Property+Reference11:50:00## For more information see
11:50:00## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:50:00#############################################
11:50:0011:50:00# Disable IPv6 by setting to 0. Only needed in
11:50:00# certain situations.
11:50:00Ice.IPv6=1
11:50:0011:50:00# Glacier2Template IceSSL defaults and overrides,
11:50:00# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:50:00# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:50:00# update the corresponding IceSSL. property.
11:50:00omero.glacier2.IceSSL=
11:50:0011:50:00# Glacier2Template SSL maximum allowed protocol (mac bug)
11:50:00omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:50:00# Glacier2Template SSL allowed cipher suites
11:50:00omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:50:00# Glacier2Template SSL verification requirements
11:50:00omero.glacier2.IceSSL.VerifyPeer=0
11:50:00# Glacier2Template SSL allowed protocols
11:50:00omero.glacier2.IceSSL.Protocols=tls1
11:50:0011:50:00# Override the default set of OMERO services.
11:50:00# For example, to run OMERO.server with Blitz and Tables only
11:50:00# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:50:00# set this to ``master:Blitz-0,Tables-0``.
11:50:00# Also use this to distribute OMERO services across multiple nodes,
11:50:00# for example:
11:50:00# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:50:00# See
11:50:00# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:50:00omero.server.nodedescriptors=
11:50:0011:50:00#############################################
11:50:00## Darwin (OS X) specific defaults for templated configuration files only.
11:50:00## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:50:00## file.
11:50:00## Do not set these properties in ``omero config``, instead set the original
11:50:00## ``xxx.yyy`` property
11:50:00#############################################
11:50:00_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:50:0011:50:00## (For documentation only)
11:50:00# Name of the Python module to use when starting the Tables service
11:50:00omero.tables.module=runTables
11:50:0011:50:00#############################################
11:50:00## Server product name for release artifacts
11:50:00#############################################
11:50:00product.name=OMERO.server
11:50:0011:50:00#############################################
11:50:00### Properties below this marker are ignored by
11:50:00### omero.install.config_parser.PropertyParser
11:50:00### END
11:50:0011:50:00#############################################
11:50:00## Library versions
11:50:00#############################################
11:50:00##
11:50:00versions.findbugs=1.2.1
11:50:00versions.ice36=3.6.5
11:50:00versions.ice36_lib=36
11:50:00## internal
11:50:00versions.omeroshares36=3.6.3
11:50:00versions.omeromock36=3.6.3
11:50:00versions.icedb36=3.6.3
11:50:00versions.ipython=1.2.1
11:50:0011:50:00versions.janino=2.5.10
11:50:0011:50:00versions.reportng=1.1.1
11:50:0011:50:00versions.testng=7.5
11:50:00versions.velocity=1.4
11:50:0011:50:00versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:50:00versions.omero-scripts-url=${versions.omero-pypi}
11:50:0011:50:00###
11:50:00### Appended Values
11:50:00###
11:50:0011:50:00## Internal dependencies'
11:50:00+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/11:50:00+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive11:50:00+ echo versions.scripts-prefix=
11:50:00+ echo versions.scripts=merge_ci
11:50:00+ cat /home/omero/workspace/OMERO-push/version.properties
11:50:00+ git commit -a -m 'Add version.properties to etc/omero.properties'
11:50:00[detached HEAD e0180adcad] Add version.properties to etc/omero.properties
11:50:00 1 file changed, 46 insertions(+), 6 deletions(-)
11:50:00+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
11:50:03To github.com:snoopycrimecop/openmicroscopy.git
11:50:03 + f9a7f8ddff...e0180adcad HEAD -> merge_ci (forced update)
11:50:03Finished: SUCCESS
