12:56:51Started by upstream project "Trigger" build number 3612:56:51originally caused by:
12:56:51 Started by user devspace12:56:51Running as SYSTEM
12:56:51Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
12:56:51The recommended git tool is: NONE
12:56:51No credentials specified
12:56:51 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
12:56:51Fetching changes from the remote Git repository
12:56:51 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
12:56:52Fetching upstream changes from https://github.com/ome/openmicroscopy.git12:56:52 > git --version # timeout=10
12:56:52 > git --version # 'git version 2.52.0'
12:56:52 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
12:56:53 > git rev-parse origin/develop^{commit} # timeout=10
12:56:53Checking out Revision bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 (origin/develop)
12:56:53 > git config core.sparsecheckout # timeout=10
12:56:53 > git checkout -f bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=30
12:56:54Commit message: "Merge pull request #6464 from pwalczysko/pyramid-little-endian-test"
12:56:54 > git rev-list --no-walk bf5e0bd085f2f4c689f100ba403ab99458c6b9f0 # timeout=10
12:56:54Cleaning workspace
12:56:54 > git rev-parse --verify HEAD # timeout=10
12:56:54Resetting working tree
12:56:54 > git reset --hard # timeout=10
12:56:54 > git clean -fdx # timeout=10
12:56:54Copied 1 artifact from "OMERO-python-superbuild-build" build number 2212:56:54[OMERO-push] $ /bin/bash -xe /tmp/jenkins14966588840731456633.sh
12:56:54+ python3.11 -mvenv venv
12:56:56+ source /home/omero/workspace/OMERO-push/venv/bin/activate
12:56:56++ deactivate nondestructive
12:56:56++ '[' -n '' ']'
12:56:56++ '[' -n '' ']'
12:56:56++ hash -r
12:56:56++ '[' -n '' ']'
12:56:56++ unset VIRTUAL_ENV
12:56:56++ unset VIRTUAL_ENV_PROMPT
12:56:56++ '[' '!' nondestructive = nondestructive ']'
12:56:56++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
12:56:56++ export VIRTUAL_ENV
12:56:56++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:56:56++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:56:56++ export PATH
12:56:56++ '[' -n '' ']'
12:56:56++ '[' -z '' ']'
12:56:56++ _OLD_VIRTUAL_PS1=
12:56:56++ PS1='(venv) '
12:56:56++ export PS1
12:56:56++ VIRTUAL_ENV_PROMPT='(venv) '
12:56:56++ export VIRTUAL_ENV_PROMPT
12:56:56++ hash -r
12:56:56+ pip install -U pip
12:56:57Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.1.2)
12:56:58+ pip install -U scc
12:56:58Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
12:56:58Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
12:56:58Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
12:56:58Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
12:56:58Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
12:56:59Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
12:56:59Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
12:56:59Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
12:56:59Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
12:56:59Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
12:56:59Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
12:56:59Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
12:56:59Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
12:56:59Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
12:56:59Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
12:56:59Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
12:56:59Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
12:56:59Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
12:56:59Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
12:56:59+ test -e src
12:56:59+ cd src
12:56:59++ git config github.user
12:56:59+ user=snoopycrimecop
12:56:59+ scc merge develop --no-ask --reset --shallow -S success-only
12:57:042026-07-29 12:57:04,397 [ scc.merge] INFO Merging Pull Request(s) based on develop
12:57:042026-07-29 12:57:04,397 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
12:57:042026-07-29 12:57:04,397 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
12:57:042026-07-29 12:57:04,397 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
12:57:042026-07-29 12:57:04,397 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
12:57:042026-07-29 12:57:04,397 [ scc.merge] INFO Excluding Pull Request(s) without successful status
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO Repository: ome/openmicroscopy
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO Excluded PRs:
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO - PR 6471 pwalczysko 'Rewrite pyramid tests' (label: exclude)
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment)
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO Already up to date.
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO Merged PRs:
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO - PR 6455 will-moore 'test_api_rois.py checks load_shapes includes externalInfo'
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})'
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO - PR 6462 pwalczysko 'Fix the failure of the test_cleanse.py'
12:57:302026-07-29 12:57:30,464 [ scc.merge] INFO
12:57:30+ cp etc/omero.properties etc/omero.properties.bak
12:57:30+ rm etc/omero.properties
12:57:30+ touch etc/omero.properties
12:57:30++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
12:57:30+ ne=249
12:57:30++ sed -n 1,249p etc/omero.properties.bak
12:57:30+ line='##
12:57:30## omero.properties
12:57:30## ----------------
12:57:30##
12:57:30## DO NOT EDIT!
12:57:30##
12:57:30##
12:57:30## Any of these properties can be altered by using `omero config`. MODIFYING
12:57:30## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
12:57:30## at compile time!
12:57:30##
12:57:30## For an overview of these properties, see
12:57:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html12:57:30##
12:57:30## Properties marked with "DEVELOPMENT" should not be used in production.
12:57:3012:57:30# Comma separated list of Ice transports available to clients. The default
12:57:30# value ("ssl,tcp") instructs Ice to open the ports specified by the
12:57:30# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
12:57:30# will prevent all non-encrypted connections to the OMERO server.
12:57:30#
12:57:30# Additionally, there are two experimental values for using websockets:
12:57:30# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
12:57:30# that are opened are controlled by the omero.ports.ws and omero.ports.wss
12:57:30# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
12:57:30#
12:57:30# Note: When using websockets behind a web server like nginx, additional
12:57:30# configuration may be needed.
12:57:30omero.client.icetransports=ssl,tcp
12:57:3012:57:30# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
12:57:30# server
12:57:30omero.ports.prefix=
12:57:3012:57:30# The Glacier2 SSL port number to use
12:57:30omero.ports.ssl=4064
12:57:3012:57:30# The Glacier2 TCP port number to use (unencrypted)
12:57:30omero.ports.tcp=4063
12:57:3012:57:30# The Glacier2 WSS port number to use
12:57:30omero.ports.wss=4066
12:57:3012:57:30# The Glacier2 WS port number to use (unencrypted)
12:57:30omero.ports.ws=4065
12:57:3012:57:30# The IceGrid registry port number to use
12:57:30omero.ports.registry=4061
12:57:3012:57:30#############################################
12:57:30## JVM configuration
12:57:30##
12:57:30## Note: changes to the omero.jvmcfg properties
12:57:30## will *not* be reflected in OMERO.server
12:57:30## since they are defined in OMERO.py.
12:57:30#############################################
12:57:30## (For documentation only)
12:57:30# Memory strategy which will be used by default.
12:57:30# Options include: percent, manual
12:57:30omero.jvmcfg.strategy=percent
12:57:3012:57:30## (For documentation only)
12:57:30# Explicit value for the `-Xmx` argument, e.g.
12:57:30# "1g"
12:57:30omero.jvmcfg.heap_size=
12:57:3012:57:30## (For documentation only)
12:57:30# Explicit value for the MaxPermSize argument
12:57:30# to the JVM, e.g. "500M". Ignored for Java8+
12:57:30omero.jvmcfg.perm_gen=
12:57:3012:57:30## (For documentation only)
12:57:30# Toggles on or off heap dumps on OOMs. Default is "off".
12:57:30# The special value "tmp" will create the heap dumps in
12:57:30# your temp directory.
12:57:30omero.jvmcfg.heap_dump=
12:57:3012:57:30## (For documentation only)
12:57:30# Used only by the percent strategy. An integer between 0
12:57:30# and 100 which is the percent of active memory that will
12:57:30# be used by the service.
12:57:30omero.jvmcfg.percent=
12:57:3012:57:30## (For documentation only)
12:57:30# Contains other parameters which should be passed to the
12:57:30# JVM. The value of "append" is treated as if it were on
12:57:30# the command line so will be separated on whitespace.
12:57:30# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
12:57:30# results in two new arguments.
12:57:30# Note that when using `config set` from the command line
12:57:30# one may need to give a prior `--` option to prevent a value
12:57:30# starting with `-` from already being parsed as an option,
12:57:30# and values may need quoting to prevent whitespace or other
12:57:30# significant characters from being interpreted prematurely.
12:57:3012:57:30omero.jvmcfg.append=
12:57:3012:57:30## (For documentation only)
12:57:30# Manual override of the total system memory that
12:57:30# OMERO will *think* is present on the local OS (MB).
12:57:30# If unset, an attempt will be made to detect the actual
12:57:30# amount: first by using the Python library `psutil` and
12:57:30# if that is not installed, by running a Java tool. If
12:57:30# neither works, 4.0GB is assumed.
12:57:30omero.jvmcfg.system_memory=
12:57:3012:57:30## (For documentation only)
12:57:30# Suggestion for strategies as to the minimum memory
12:57:30# that they will use for calculating JVM settings (MB).
12:57:30omero.jvmcfg.min_system_memory=3414
12:57:3012:57:30## (For documentation only)
12:57:30# Suggestion for strategies as to the maximum memory
12:57:30# that they will use for calculating JVM settings (MB).
12:57:30omero.jvmcfg.max_system_memory=48000
12:57:3012:57:3012:57:30#############################################
12:57:30## Logging properties
12:57:30##
12:57:30## Note: changes to the default omero.logging values in
12:57:30## this file will *not* be reflected in OMERO.server
12:57:30## since they are defined in OMERO.py
12:57:30#############################################
12:57:3012:57:30## (For documentation only)
12:57:30# Relative server directory where the log files should be stored.
12:57:30omero.logging.directory=var/log/
12:57:3012:57:30## (For documentation only)
12:57:30# Whether the server log files should be rotated at a certain time
12:57:30# interval. If true, log files will be rolled over at midnight.
12:57:30# Otherwise, log files will be rolled over at a predetermined size,
12:57:30# see omero.logging.logsize for more information.
12:57:30omero.logging.timedlog=false
12:57:3012:57:30## (For documentation only)
12:57:30# If omero.logging.timedlog is false or unset, specifies the
12:57:30# maximum size of the server log files in bytes above which a
12:57:30# new log file should be created.
12:57:30omero.logging.logsize=5000000
12:57:3012:57:30## (For documentation only)
12:57:30# If omero.logging.timedlog is false or unset, specifies the
12:57:30# number of old server log files that should be kept. Old log
12:57:30# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
12:57:30omero.logging.lognum=9
12:57:3012:57:30## (For documentation only)
12:57:30# Specifies the threshold for the Python servers log files. Logging messages
12:57:30# which are less severe than this value will be ignored. For a list of
12:57:30# available values, see https://docs.python.org/3/library/logging.html#levels.
12:57:30omero.logging.level=20
12:57:3012:57:30#############################################
12:57:30## Ice overrides
12:57:30##
12:57:30## Though not used directly by OMERO, a number
12:57:30## of properties prefixed with "Ice.*" will
12:57:30## alter the behavior of the OMERO runtime
12:57:30## by configuring the Ice communicators. For a
12:57:30## full listing see:
12:57:30##
12:57:30## http://doc.zeroc.com/display/Ice/Property+Reference12:57:30## For more information see
12:57:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start12:57:30#############################################
12:57:3012:57:30# Disable IPv6 by setting to 0. Only needed in
12:57:30# certain situations.
12:57:30Ice.IPv6=1
12:57:3012:57:30# Glacier2Template IceSSL defaults and overrides,
12:57:30# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
12:57:30# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
12:57:30# update the corresponding IceSSL. property.
12:57:30omero.glacier2.IceSSL=
12:57:3012:57:30# Glacier2Template SSL maximum allowed protocol (mac bug)
12:57:30omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
12:57:30# Glacier2Template SSL allowed cipher suites
12:57:30omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
12:57:30# Glacier2Template SSL verification requirements
12:57:30omero.glacier2.IceSSL.VerifyPeer=0
12:57:30# Glacier2Template SSL allowed protocols
12:57:30omero.glacier2.IceSSL.Protocols=tls1
12:57:3012:57:30# Override the default set of OMERO services.
12:57:30# For example, to run OMERO.server with Blitz and Tables only
12:57:30# (i.e. disable Processor, DropBox, Indexer, PixelData)
12:57:30# set this to ``master:Blitz-0,Tables-0``.
12:57:30# Also use this to distribute OMERO services across multiple nodes,
12:57:30# for example:
12:57:30# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
12:57:30# See
12:57:30# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples12:57:30omero.server.nodedescriptors=
12:57:3012:57:30#############################################
12:57:30## Darwin (OS X) specific defaults for templated configuration files only.
12:57:30## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
12:57:30## file.
12:57:30## Do not set these properties in ``omero config``, instead set the original
12:57:30## ``xxx.yyy`` property
12:57:30#############################################
12:57:30_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
12:57:3012:57:30## (For documentation only)
12:57:30# Name of the Python module to use when starting the Tables service
12:57:30omero.tables.module=runTables
12:57:3012:57:30#############################################
12:57:30## Server product name for release artifacts
12:57:30#############################################
12:57:30product.name=OMERO.server
12:57:3012:57:30#############################################
12:57:30### Properties below this marker are ignored by
12:57:30### omero.install.config_parser.PropertyParser
12:57:30### END
12:57:3012:57:30#############################################
12:57:30## Library versions
12:57:30#############################################
12:57:30##
12:57:30versions.findbugs=1.2.1
12:57:30versions.ice36=3.6.5
12:57:30versions.ice36_lib=36
12:57:30## internal
12:57:30versions.omeroshares36=3.6.3
12:57:30versions.omeromock36=3.6.3
12:57:30versions.icedb36=3.6.3
12:57:30versions.ipython=1.2.1
12:57:3012:57:30versions.janino=2.5.10
12:57:3012:57:30versions.reportng=1.1.1
12:57:3012:57:30versions.testng=7.5
12:57:30versions.velocity=1.4
12:57:3012:57:30versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE12:57:30versions.omero-scripts-url=${versions.omero-pypi}
12:57:3012:57:30###
12:57:30### Appended Values
12:57:30###
12:57:3012:57:30## Internal dependencies'
12:57:30+ echo '##
12:57:30## omero.properties
12:57:30## ----------------
12:57:30##
12:57:30## DO NOT EDIT!
12:57:30##
12:57:30##
12:57:30## Any of these properties can be altered by using `omero config`. MODIFYING
12:57:30## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
12:57:30## at compile time!
12:57:30##
12:57:30## For an overview of these properties, see
12:57:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html12:57:30##
12:57:30## Properties marked with "DEVELOPMENT" should not be used in production.
12:57:3012:57:30# Comma separated list of Ice transports available to clients. The default
12:57:30# value ("ssl,tcp") instructs Ice to open the ports specified by the
12:57:30# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
12:57:30# will prevent all non-encrypted connections to the OMERO server.
12:57:30#
12:57:30# Additionally, there are two experimental values for using websockets:
12:57:30# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
12:57:30# that are opened are controlled by the omero.ports.ws and omero.ports.wss
12:57:30# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
12:57:30#
12:57:30# Note: When using websockets behind a web server like nginx, additional
12:57:30# configuration may be needed.
12:57:30omero.client.icetransports=ssl,tcp
12:57:3012:57:30# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
12:57:30# server
12:57:30omero.ports.prefix=
12:57:3012:57:30# The Glacier2 SSL port number to use
12:57:30omero.ports.ssl=4064
12:57:3012:57:30# The Glacier2 TCP port number to use (unencrypted)
12:57:30omero.ports.tcp=4063
12:57:3012:57:30# The Glacier2 WSS port number to use
12:57:30omero.ports.wss=4066
12:57:3012:57:30# The Glacier2 WS port number to use (unencrypted)
12:57:30omero.ports.ws=4065
12:57:3012:57:30# The IceGrid registry port number to use
12:57:30omero.ports.registry=4061
12:57:3012:57:30#############################################
12:57:30## JVM configuration
12:57:30##
12:57:30## Note: changes to the omero.jvmcfg properties
12:57:30## will *not* be reflected in OMERO.server
12:57:30## since they are defined in OMERO.py.
12:57:30#############################################
12:57:30## (For documentation only)
12:57:30# Memory strategy which will be used by default.
12:57:30# Options include: percent, manual
12:57:30omero.jvmcfg.strategy=percent
12:57:3012:57:30## (For documentation only)
12:57:30# Explicit value for the `-Xmx` argument, e.g.
12:57:30# "1g"
12:57:30omero.jvmcfg.heap_size=
12:57:3012:57:30## (For documentation only)
12:57:30# Explicit value for the MaxPermSize argument
12:57:30# to the JVM, e.g. "500M". Ignored for Java8+
12:57:30omero.jvmcfg.perm_gen=
12:57:3012:57:30## (For documentation only)
12:57:30# Toggles on or off heap dumps on OOMs. Default is "off".
12:57:30# The special value "tmp" will create the heap dumps in
12:57:30# your temp directory.
12:57:30omero.jvmcfg.heap_dump=
12:57:3012:57:30## (For documentation only)
12:57:30# Used only by the percent strategy. An integer between 0
12:57:30# and 100 which is the percent of active memory that will
12:57:30# be used by the service.
12:57:30omero.jvmcfg.percent=
12:57:3012:57:30## (For documentation only)
12:57:30# Contains other parameters which should be passed to the
12:57:30# JVM. The value of "append" is treated as if it were on
12:57:30# the command line so will be separated on whitespace.
12:57:30# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
12:57:30# results in two new arguments.
12:57:30# Note that when using `config set` from the command line
12:57:30# one may need to give a prior `--` option to prevent a value
12:57:30# starting with `-` from already being parsed as an option,
12:57:30# and values may need quoting to prevent whitespace or other
12:57:30# significant characters from being interpreted prematurely.
12:57:3012:57:30omero.jvmcfg.append=
12:57:3012:57:30## (For documentation only)
12:57:30# Manual override of the total system memory that
12:57:30# OMERO will *think* is present on the local OS (MB).
12:57:30# If unset, an attempt will be made to detect the actual
12:57:30# amount: first by using the Python library `psutil` and
12:57:30# if that is not installed, by running a Java tool. If
12:57:30# neither works, 4.0GB is assumed.
12:57:30omero.jvmcfg.system_memory=
12:57:3012:57:30## (For documentation only)
12:57:30# Suggestion for strategies as to the minimum memory
12:57:30# that they will use for calculating JVM settings (MB).
12:57:30omero.jvmcfg.min_system_memory=3414
12:57:3012:57:30## (For documentation only)
12:57:30# Suggestion for strategies as to the maximum memory
12:57:30# that they will use for calculating JVM settings (MB).
12:57:30omero.jvmcfg.max_system_memory=48000
12:57:3012:57:3012:57:30#############################################
12:57:30## Logging properties
12:57:30##
12:57:30## Note: changes to the default omero.logging values in
12:57:30## this file will *not* be reflected in OMERO.server
12:57:30## since they are defined in OMERO.py
12:57:30#############################################
12:57:3012:57:30## (For documentation only)
12:57:30# Relative server directory where the log files should be stored.
12:57:30omero.logging.directory=var/log/
12:57:3012:57:30## (For documentation only)
12:57:30# Whether the server log files should be rotated at a certain time
12:57:30# interval. If true, log files will be rolled over at midnight.
12:57:30# Otherwise, log files will be rolled over at a predetermined size,
12:57:30# see omero.logging.logsize for more information.
12:57:30omero.logging.timedlog=false
12:57:3012:57:30## (For documentation only)
12:57:30# If omero.logging.timedlog is false or unset, specifies the
12:57:30# maximum size of the server log files in bytes above which a
12:57:30# new log file should be created.
12:57:30omero.logging.logsize=5000000
12:57:3012:57:30## (For documentation only)
12:57:30# If omero.logging.timedlog is false or unset, specifies the
12:57:30# number of old server log files that should be kept. Old log
12:57:30# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
12:57:30omero.logging.lognum=9
12:57:3012:57:30## (For documentation only)
12:57:30# Specifies the threshold for the Python servers log files. Logging messages
12:57:30# which are less severe than this value will be ignored. For a list of
12:57:30# available values, see https://docs.python.org/3/library/logging.html#levels.
12:57:30omero.logging.level=20
12:57:3012:57:30#############################################
12:57:30## Ice overrides
12:57:30##
12:57:30## Though not used directly by OMERO, a number
12:57:30## of properties prefixed with "Ice.*" will
12:57:30## alter the behavior of the OMERO runtime
12:57:30## by configuring the Ice communicators. For a
12:57:30## full listing see:
12:57:30##
12:57:30## http://doc.zeroc.com/display/Ice/Property+Reference12:57:30## For more information see
12:57:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start12:57:30#############################################
12:57:3012:57:30# Disable IPv6 by setting to 0. Only needed in
12:57:30# certain situations.
12:57:30Ice.IPv6=1
12:57:3012:57:30# Glacier2Template IceSSL defaults and overrides,
12:57:30# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
12:57:30# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
12:57:30# update the corresponding IceSSL. property.
12:57:30omero.glacier2.IceSSL=
12:57:3012:57:30# Glacier2Template SSL maximum allowed protocol (mac bug)
12:57:30omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
12:57:30# Glacier2Template SSL allowed cipher suites
12:57:30omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
12:57:30# Glacier2Template SSL verification requirements
12:57:30omero.glacier2.IceSSL.VerifyPeer=0
12:57:30# Glacier2Template SSL allowed protocols
12:57:30omero.glacier2.IceSSL.Protocols=tls1
12:57:3012:57:30# Override the default set of OMERO services.
12:57:30# For example, to run OMERO.server with Blitz and Tables only
12:57:30# (i.e. disable Processor, DropBox, Indexer, PixelData)
12:57:30# set this to ``master:Blitz-0,Tables-0``.
12:57:30# Also use this to distribute OMERO services across multiple nodes,
12:57:30# for example:
12:57:30# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
12:57:30# See
12:57:30# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples12:57:30omero.server.nodedescriptors=
12:57:3012:57:30#############################################
12:57:30## Darwin (OS X) specific defaults for templated configuration files only.
12:57:30## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
12:57:30## file.
12:57:30## Do not set these properties in ``omero config``, instead set the original
12:57:30## ``xxx.yyy`` property
12:57:30#############################################
12:57:30_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
12:57:3012:57:30## (For documentation only)
12:57:30# Name of the Python module to use when starting the Tables service
12:57:30omero.tables.module=runTables
12:57:3012:57:30#############################################
12:57:30## Server product name for release artifacts
12:57:30#############################################
12:57:30product.name=OMERO.server
12:57:3012:57:30#############################################
12:57:30### Properties below this marker are ignored by
12:57:30### omero.install.config_parser.PropertyParser
12:57:30### END
12:57:3012:57:30#############################################
12:57:30## Library versions
12:57:30#############################################
12:57:30##
12:57:30versions.findbugs=1.2.1
12:57:30versions.ice36=3.6.5
12:57:30versions.ice36_lib=36
12:57:30## internal
12:57:30versions.omeroshares36=3.6.3
12:57:30versions.omeromock36=3.6.3
12:57:30versions.icedb36=3.6.3
12:57:30versions.ipython=1.2.1
12:57:3012:57:30versions.janino=2.5.10
12:57:3012:57:30versions.reportng=1.1.1
12:57:3012:57:30versions.testng=7.5
12:57:30versions.velocity=1.4
12:57:3012:57:30versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE12:57:30versions.omero-scripts-url=${versions.omero-pypi}
12:57:3012:57:30###
12:57:30### Appended Values
12:57:30###
12:57:3012:57:30## Internal dependencies'
12:57:30+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/12:57:30+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive12:57:30+ echo versions.scripts-prefix=
12:57:30+ echo versions.scripts=merge_ci
12:57:30+ cat /home/omero/workspace/OMERO-push/version.properties
12:57:30+ git commit -a -m 'Add version.properties to etc/omero.properties'
12:57:30[detached HEAD fbd2e29eae] Add version.properties to etc/omero.properties
12:57:30 1 file changed, 46 insertions(+), 6 deletions(-)
12:57:30+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
12:57:34To github.com:snoopycrimecop/openmicroscopy.git
12:57:34 + e0180adcad...fbd2e29eae HEAD -> merge_ci (forced update)
12:57:34Finished: SUCCESS
