21:11:39 Started by upstream project "Trigger" build number 3
21:11:39 originally caused by:
21:11:39 Started by user devspace
21:11:39 Running as SYSTEM
21:11:39 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
21:11:39 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15386582388157533021.sh
21:11:39 + source /home/settings.env
21:11:39 ++ OMERO_DB_HOST=pg
21:11:39 ++ OMERO_DB_USER=postgres
21:11:39 ++ OMERO_DB_PASS=
21:11:39 ++ OMERO_ROOT_PASS=omero
21:11:39 ++ OMERO_DATA_DIR=/OMERO
21:11:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
21:11:39 + OMERO_DB_NAME=OMERO-server
21:11:39 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
21:11:39 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
21:11:39 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
21:11:39 + OMERO_DATA_DIR=/home/omero/omero-server-data
21:11:39 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
21:11:39 + rm -rf /home/omero/workspace/OMERO-server/.venv3
21:11:39 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
21:11:43 + '[' false = true ']'
21:11:43 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
21:11:43 Skipping PURGE_DATA:CleanDbAndRepo
21:11:43 + rm -rf '/home/omero/workspace/OMERO-server/*'
21:11:45 Copied 1 artifact from "OMERO-build" build number 1
21:11:45 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 1
21:11:45 Copied 2 artifacts from "OMERO-build-build" build number 4
21:11:45 [OMERO-server] $ /bin/bash -xe /tmp/jenkins18148053956739660956.sh
21:11:45 + source /home/settings.env
21:11:45 ++ OMERO_DB_HOST=pg
21:11:45 ++ OMERO_DB_USER=postgres
21:11:45 ++ OMERO_DB_PASS=
21:11:45 ++ OMERO_ROOT_PASS=omero
21:11:45 ++ OMERO_DATA_DIR=/OMERO
21:11:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
21:11:45 + OMERO_DB_NAME=OMERO-server
21:11:45 + OMERO_DATA_DIR=/home/omero/omero-server-data
21:11:45 + mkdir -p /home/omero/omero-server-data
21:11:45 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
21:11:45 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
21:11:45 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
21:11:45 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
21:11:45 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
21:11:45 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
21:11:45 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
21:11:45 ++ ls OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip
21:11:45 + ZIP=OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip
21:11:45 + '[' '!' -z '' ']'
21:11:45 + DIST=OMERO.server-5.6.3-576-82ef22269e-ice36-b1
21:11:45 + unzip OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip
21:11:45 Archive: OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/blitz/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/grid/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/profiles/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/error/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/janelia/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/matplotlib/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/ncsa_paledit/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/seaborn/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/luts/wcif/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/analysis_scripts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/annotation_scripts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/export_scripts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/figure_scripts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/import_scripts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/scripts/omero/util_scripts/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/misc/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__1/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__10/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__11/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__2/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__3/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__4/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__5/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__6/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__7/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__8/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__9/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__4/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__5/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__6/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__7/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.1__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/t/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.3__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.4__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__1/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__2/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__3/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/var/
21:11:45 creating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/var/tmp/
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/LICENSE.txt
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/backup.cfg
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/blitz/mail-senders.example
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/blitz/mail-server.example
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/build.properties
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/env.bat
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/env.sh
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/hibernate.properties
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/ice.config
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback-cli.xml
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback-indexing-cli.xml
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback-indexing.xml
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/logback.xml
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/mime.types
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/node1.cfg
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/node2.cfg
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/omero.properties
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/profiles/psql
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/rollover.cfg
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/Windows.cfg
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/error/maintainance.html
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/README
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/default.xml
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/templates.xml
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/grid/windefault.xml
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/ice.config
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/internal.cfg
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/master.cfg
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/templates/robot.template
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/etc/testdropbox.config
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/history.rst
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/OMEZarrReader.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/accessors-smart.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/activation.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aggdesigner-algorithm.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aircompressor.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/antlr.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aopalliance.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/apiguardian-api.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/asm.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/avatica-core.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/avatica-metrics.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aws-java-sdk-core.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aws-java-sdk-kms.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/aws-java-sdk-s3.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/base.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-anim.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-awt-util.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-bridge.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-codec.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-constants.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-css.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-dom.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-ext.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-gvt.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-i18n.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-parser.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-script.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-shared-resources.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-svg-dom.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-svggen.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-transcoder.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-util.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/batik-xml.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/btm.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/calcite-core.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/calcite-linq4j.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/cdm-core.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/checker-qual.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-beanutils.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-codec.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-collections.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-collections4.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-compiler.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-dbcp2.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-io.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-lang.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-lang3.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-logging.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-math.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-math3.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/commons-pool2.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/dom4j.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/ehcache.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/error_prone_annotations.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/failureaccess.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/filters.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/fontbox.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/formats-api.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/formats-bsd.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/formats-gpl.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/glacier2.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/google-http-client-xml.jar
21:11:45 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/client/google-http-client.jar
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21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/omero-romio.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/omero-server.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/pdfbox.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/perf4j.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/postgresql.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/proj4j.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/protobuf-java.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/quartz.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/re2j.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/reflectasm.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/serializer.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/sketches-core.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/slf4j-api.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/snakeyaml.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/solr-analysis-extras.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/solr-commons-csv.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/solr-core.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/solr-solrj.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/specification.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-aop.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-beans.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-context-support.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-context.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-core.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-expression.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-jdbc.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-jms.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-ldap-core.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-messaging.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-orm.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-security-core.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-security-ldap.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/spring-tx.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/sqlite-jdbc.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/subethasmtp.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/turbojpeg.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/uzaygezen-core.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/xalan.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/xercesImpl.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/xml-apis-ext.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/xml-apis.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/xmlgraphics-commons.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/xmpcore.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/lib/server/xpp3.jar
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/README
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/agpl.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/antlr.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/apache-v1.1.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/apache-v2.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/asm.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/bouncy_castle_license.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/bsd.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/cddl-v1.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/cpl-v10.html
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/crystalclear.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/django.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/dom4j.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/epl-v1.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/fbsd.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/freemarker.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/gpl-v2.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/gpl.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/gtest.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/iconsweets_license.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/jamon.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/jmock.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/jquery.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/jtidy.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/lgpl-3.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/lgpl-v2.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/lgpl-v2.1.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/lgpl-v3.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/lgpl.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/matplotlib.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/mit.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/mpl-v1_0.htm
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/npl-1_1.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/path.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/pil.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/postgresql.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/psf-v2.0.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/psf-v2.5.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/scons.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/slf4j.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/tablelayout.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/which.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/zlib-libpng.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/share/licenses/zpl-v2.1.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/README.txt
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/misc/Makefile
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/misc/current.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/misc/enums.py
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__1/OMERO3__7.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__10/OMERO3A__9.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__11/OMERO3A__10.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__11/OMERO3A__5.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__2/OMERO3A__1.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__3/OMERO3A__2.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__3/OMERO3__5.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__4/OMERO3A__3.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__4/OMERO3__5.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__5/OMERO3A__4.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__6/OMERO3A__5.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__7/OMERO3A__6.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__8/OMERO3A__6.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3A__9/OMERO3A__8.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__4/OMERO3__1.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__5/OMERO3__4.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__6/OMERO3__5.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO3__7/OMERO3__6.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.1__0/OMERO4__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO4__0/OMERO3A__11.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/psql-footer.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/psql-header.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/schema.sql
21:11:47 inflating: OMERO.server-5.6.3-576-82ef22269e-ice36-b1/sql/psql/OMERO5.4__0/views.sql
21:11:47 + rm -f OMERO.server-5.6.3-576-82ef22269e-ice36-b1.zip
21:11:47 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-82ef22269e-ice36-b1 /home/omero/workspace/OMERO-server/OMERO.server
21:11:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
21:11:47 ++ deactivate nondestructive
21:11:47 ++ '[' -n '' ']'
21:11:47 ++ '[' -n '' ']'
21:11:47 ++ hash -r
21:11:47 ++ '[' -n '' ']'
21:11:47 ++ unset VIRTUAL_ENV
21:11:47 ++ unset VIRTUAL_ENV_PROMPT
21:11:47 ++ '[' '!' nondestructive = nondestructive ']'
21:11:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
21:11:47 ++ export VIRTUAL_ENV
21:11:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
21:11:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
21:11:47 ++ export PATH
21:11:47 ++ '[' -n '' ']'
21:11:47 ++ '[' -z '' ']'
21:11:47 ++ _OLD_VIRTUAL_PS1=
21:11:47 ++ PS1='(.venv3) '
21:11:47 ++ export PS1
21:11:47 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
21:11:47 ++ export VIRTUAL_ENV_PROMPT
21:11:47 ++ hash -r
21:11:47 + pip install -U pip
21:11:48 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
21:11:48 Collecting pip
21:11:48 Downloading pip-25.3-py3-none-any.whl (1.8 MB)
21:11:48 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 11.0 MB/s eta 0:00:00
21:11:48 Installing collected packages: pip
21:11:48 Attempting uninstall: pip
21:11:48 Found existing installation: pip 22.3.1
21:11:48 Uninstalling pip-22.3.1:
21:11:48 Successfully uninstalled pip-22.3.1
21:11:49 Successfully installed pip-25.3
21:11:49 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
21:11:50 Collecting zeroc-ice==3.6.5
21:11:50 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
21:11:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 14.0 MB/s 0:00:02
21:11:53 Installing collected packages: zeroc-ice
21:11:53 Successfully installed zeroc-ice-3.6.5
21:11:53 + pip install markdown
21:11:54 Collecting markdown
21:11:54 Downloading markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
21:11:54 Downloading markdown-3.10-py3-none-any.whl (107 kB)
21:11:54 Installing collected packages: markdown
21:11:54 Successfully installed markdown-3.10
21:11:54 + pip install reportlab
21:11:55 Collecting reportlab
21:11:55 Downloading reportlab-4.4.6-py3-none-any.whl.metadata (1.7 kB)
21:11:55 Collecting pillow>=9.0.0 (from reportlab)
21:11:55 Downloading pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
21:11:55 Collecting charset-normalizer (from reportlab)
21:11:55 Downloading charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
21:11:55 Downloading reportlab-4.4.6-py3-none-any.whl (2.0 MB)
21:11:55 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 21.4 MB/s 0:00:00
21:11:55 Downloading pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
21:11:56 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 23.2 MB/s 0:00:00
21:11:56 Downloading charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
21:11:56 Installing collected packages: pillow, charset-normalizer, reportlab
21:11:57
21:11:57 Successfully installed charset-normalizer-3.4.4 pillow-12.0.0 reportlab-4.4.6
21:11:57 + pip install omego
21:11:57 Collecting omego
21:11:57 Downloading omego-0.7.0.tar.gz (31 kB)
21:11:57 Installing build dependencies: started
21:11:58 Installing build dependencies: finished with status 'done'
21:11:58 Getting requirements to build wheel: started
21:11:58 Getting requirements to build wheel: finished with status 'done'
21:11:58 Preparing metadata (pyproject.toml): started
21:11:59 Preparing metadata (pyproject.toml): finished with status 'done'
21:11:59 Collecting future (from omego)
21:11:59 Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
21:11:59 Collecting yaclifw>=0.1.1 (from omego)
21:11:59 Downloading yaclifw-0.2.0.tar.gz (13 kB)
21:11:59 Installing build dependencies: started
21:11:59 Installing build dependencies: finished with status 'done'
21:11:59 Getting requirements to build wheel: started
21:12:00 Getting requirements to build wheel: finished with status 'done'
21:12:00 Preparing metadata (pyproject.toml): started
21:12:00 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:00 Collecting six (from yaclifw>=0.1.1->omego)
21:12:00 Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
21:12:00 Downloading future-1.0.0-py3-none-any.whl (491 kB)
21:12:00 Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
21:12:00 Building wheels for collected packages: omego, yaclifw
21:12:00 Building wheel for omego (pyproject.toml): started
21:12:00 Building wheel for omego (pyproject.toml): finished with status 'done'
21:12:00 Created wheel for omego: filename=omego-0.7.0-py3-none-any.whl size=35933 sha256=a66ca447ff67d7fa142b991e2b4900387ca67f43ce3b4b259b14eb83611e2c5a
21:12:00 Stored in directory: /home/omero/.cache/pip/wheels/b2/03/f4/41da37f9fd03492f25c76713ad3afb5039979f91de90c3cea4
21:12:00 Building wheel for yaclifw (pyproject.toml): started
21:12:01 Building wheel for yaclifw (pyproject.toml): finished with status 'done'
21:12:01 Created wheel for yaclifw: filename=yaclifw-0.2.0-py3-none-any.whl size=14689 sha256=c90cefc1546ee439741600094c32e6c2ffe8c7a90646dd5618d3c54bd17b1a96
21:12:01 Stored in directory: /home/omero/.cache/pip/wheels/65/14/90/3ee93d92964646dc1f6990630191b41765be2582811bce72ac
21:12:01 Successfully built omego yaclifw
21:12:01 Installing collected packages: six, future, yaclifw, omego
21:12:01
21:12:01 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
21:12:01 + pip install tables
21:12:01 Collecting tables
21:12:01 Downloading tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
21:12:02 Collecting numpy>=1.20.0 (from tables)
21:12:02 Downloading numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
21:12:02 Collecting numexpr>=2.6.2 (from tables)
21:12:02 Downloading numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
21:12:02 Collecting packaging (from tables)
21:12:02 Downloading packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
21:12:02 Collecting py-cpuinfo (from tables)
21:12:02 Downloading py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
21:12:02 Collecting blosc2>=2.3.0 (from tables)
21:12:02 Downloading blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
21:12:02 Collecting typing-extensions>=4.4.0 (from tables)
21:12:02 Downloading typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
21:12:02 Collecting ndindex (from blosc2>=2.3.0->tables)
21:12:02 Downloading ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
21:12:02 Collecting msgpack (from blosc2>=2.3.0->tables)
21:12:02 Downloading msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
21:12:02 Collecting platformdirs (from blosc2>=2.3.0->tables)
21:12:02 Downloading platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
21:12:02 Collecting requests (from blosc2>=2.3.0->tables)
21:12:02 Downloading requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
21:12:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
21:12:02 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
21:12:02 Downloading idna-3.11-py3-none-any.whl.metadata (8.4 kB)
21:12:02 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
21:12:02 Downloading urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
21:12:03 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
21:12:03 Downloading certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB)
21:12:03 Downloading tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
21:12:03 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.5/7.5 MB 15.8 MB/s 0:00:00
21:12:03 Downloading blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
21:12:03 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 20.0 MB/s 0:00:00
21:12:03 Downloading numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
21:12:03 Downloading numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
21:12:04 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 21.2 MB/s 0:00:00
21:12:04 Downloading typing_extensions-4.15.0-py3-none-any.whl (44 kB)
21:12:04 Downloading msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
21:12:04 Downloading ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
21:12:04 Downloading packaging-25.0-py3-none-any.whl (66 kB)
21:12:04 Downloading platformdirs-4.5.1-py3-none-any.whl (18 kB)
21:12:04 Downloading py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
21:12:04 Downloading requests-2.32.5-py3-none-any.whl (64 kB)
21:12:04 Downloading idna-3.11-py3-none-any.whl (71 kB)
21:12:04 Downloading urllib3-2.6.2-py3-none-any.whl (131 kB)
21:12:04 Downloading certifi-2025.11.12-py3-none-any.whl (159 kB)
21:12:04 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
21:12:08
21:12:08 Successfully installed blosc2-3.12.2 certifi-2025.11.12 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.3.5 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2
21:12:08 + pip install jinja2
21:12:08 Collecting jinja2
21:12:08 Downloading jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
21:12:08 Collecting MarkupSafe>=2.0 (from jinja2)
21:12:08 Downloading markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
21:12:08 Downloading jinja2-3.1.6-py3-none-any.whl (134 kB)
21:12:08 Downloading markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
21:12:08 Installing collected packages: MarkupSafe, jinja2
21:12:08
21:12:08 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
21:12:08 + pip install omero-py
21:12:09 Collecting omero-py
21:12:09 Downloading omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
21:12:09 Collecting appdirs (from omero-py)
21:12:09 Downloading appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
21:12:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
21:12:09 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.5)
21:12:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.0.0)
21:12:09 Collecting PyYAML (from omero-py)
21:12:09 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
21:12:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
21:12:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
21:12:09 Collecting portalocker (from omero-py)
21:12:09 Downloading portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
21:12:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
21:12:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
21:12:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.2)
21:12:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.11.12)
21:12:09 Downloading omero_py-5.21.3-py3-none-any.whl (2.8 MB)
21:12:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 20.1 MB/s 0:00:00
21:12:09 Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
21:12:09 Downloading portalocker-3.2.0-py3-none-any.whl (22 kB)
21:12:09 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
21:12:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 806.6/806.6 kB 20.3 MB/s 0:00:00
21:12:09 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
21:12:11
21:12:11 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
21:12:11 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
21:12:12 Collecting omero-metadata
21:12:12 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-ftfdg2z6/omero-metadata_cd72e6f6e7e342b1911f65c3f606187e
21:12:12 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-ftfdg2z6/omero-metadata_cd72e6f6e7e342b1911f65c3f606187e
21:12:12 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 55360552a4c7ee5a639da7e23376fa6008d4322d
21:12:12 Installing build dependencies: started
21:12:13 Installing build dependencies: finished with status 'done'
21:12:13 Getting requirements to build wheel: started
21:12:13 Getting requirements to build wheel: finished with status 'done'
21:12:13 Preparing metadata (pyproject.toml): started
21:12:14 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
21:12:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
21:12:14 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
21:12:14 Collecting pandas (from omero-metadata)
21:12:14 Downloading pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
21:12:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
21:12:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
21:12:14 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.5)
21:12:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.0.0)
21:12:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
21:12:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
21:12:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
21:12:14 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
21:12:14 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
21:12:14 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
21:12:14 Collecting pytz>=2020.1 (from pandas->omero-metadata)
21:12:14 Downloading pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
21:12:14 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
21:12:14 Downloading tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
21:12:14 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
21:12:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
21:12:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
21:12:14 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.2)
21:12:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.11.12)
21:12:14 Downloading pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
21:12:15 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.8/12.8 MB 23.3 MB/s 0:00:00
21:12:15 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
21:12:15 Downloading pytz-2025.2-py2.py3-none-any.whl (509 kB)
21:12:15 Downloading tzdata-2025.3-py2.py3-none-any.whl (348 kB)
21:12:15 Building wheels for collected packages: omero-metadata
21:12:15 Building wheel for omero-metadata (pyproject.toml): started
21:12:16 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
21:12:16 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=98d3b3f0199b275c1532e6bfb4234b83f11ea56bde64e25d6ee0514ece71d237
21:12:16 Stored in directory: /tmp/pip-ephem-wheel-cache-edmxp4rk/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
21:12:16 Successfully built omero-metadata
21:12:16 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
21:12:21
21:12:21 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
21:12:21 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
21:12:21 Collecting omero-cli-render
21:12:21 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-_x30ihyc/omero-cli-render_b9c096f8580543b4848e940baf5170eb
21:12:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-_x30ihyc/omero-cli-render_b9c096f8580543b4848e940baf5170eb
21:12:22 Running command git checkout -b merge_ci --track origin/merge_ci
21:12:22 Switched to a new branch 'merge_ci'
21:12:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
21:12:22 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 907b17fcd50e173beaad4eca82cee6da42015710
21:12:22 Installing build dependencies: started
21:12:23 Installing build dependencies: finished with status 'done'
21:12:23 Getting requirements to build wheel: started
21:12:23 Getting requirements to build wheel: finished with status 'done'
21:12:23 Preparing metadata (pyproject.toml): started
21:12:23 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
21:12:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
21:12:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
21:12:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
21:12:23 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.5)
21:12:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.0.0)
21:12:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
21:12:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
21:12:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
21:12:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
21:12:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
21:12:23 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.2)
21:12:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.11.12)
21:12:23 Building wheels for collected packages: omero-cli-render
21:12:23 Building wheel for omero-cli-render (pyproject.toml): started
21:12:23 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
21:12:23 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=b10e73bb763ba278e5b4f5729827a31b56c57ee8546d17c31d7b109f1095362f
21:12:23 Stored in directory: /tmp/pip-ephem-wheel-cache-v1qq4cj8/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
21:12:23 Successfully built omero-cli-render
21:12:24 Installing collected packages: omero-cli-render
21:12:24 Successfully installed omero-cli-render-0.8.2.dev0
21:12:24 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
21:12:24 Collecting omero-cli-duplicate
21:12:24 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-pi3icide/omero-cli-duplicate_af78aa4af3c8441596b05fb59d6859e3
21:12:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-pi3icide/omero-cli-duplicate_af78aa4af3c8441596b05fb59d6859e3
21:12:25 Running command git checkout -b merge_ci --track origin/merge_ci
21:12:25 Switched to a new branch 'merge_ci'
21:12:25 branch 'merge_ci' set up to track 'origin/merge_ci'.
21:12:25 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 96bebeac456f9d52fcbfd37e3a4d803ef81dbb4e
21:12:25 Installing build dependencies: started
21:12:26 Installing build dependencies: finished with status 'done'
21:12:26 Getting requirements to build wheel: started
21:12:26 Getting requirements to build wheel: finished with status 'done'
21:12:26 Preparing metadata (pyproject.toml): started
21:12:26 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:26 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
21:12:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
21:12:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
21:12:26 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.5)
21:12:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.0.0)
21:12:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
21:12:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
21:12:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
21:12:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
21:12:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
21:12:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
21:12:26 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.2)
21:12:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.11.12)
21:12:26 Building wheels for collected packages: omero-cli-duplicate
21:12:26 Building wheel for omero-cli-duplicate (pyproject.toml): started
21:12:26 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
21:12:26 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=a35a6c598aaa27f4a2e378b6528022159008eb7fecdf1bf41bc4ffe1a96faeca
21:12:26 Stored in directory: /tmp/pip-ephem-wheel-cache-n8pl_377/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
21:12:26 Successfully built omero-cli-duplicate
21:12:26 Installing collected packages: omero-cli-duplicate
21:12:27 Successfully installed omero-cli-duplicate-0.4.1.dev0
21:12:27 + pip install omero-certificates
21:12:27 Collecting omero-certificates
21:12:27 Downloading omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
21:12:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
21:12:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
21:12:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
21:12:27 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.5)
21:12:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.0.0)
21:12:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
21:12:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
21:12:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
21:12:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
21:12:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
21:12:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
21:12:27 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.2)
21:12:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.11.12)
21:12:27 Downloading omero_certificates-0.4.0-py3-none-any.whl (11 kB)
21:12:27 Installing collected packages: omero-certificates
21:12:27 Successfully installed omero-certificates-0.4.0
21:12:27 + for x in *.tar.gz
21:12:27 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
21:12:28 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
21:12:28 Installing build dependencies: started
21:12:28 Installing build dependencies: finished with status 'done'
21:12:28 Getting requirements to build wheel: started
21:12:29 Getting requirements to build wheel: finished with status 'done'
21:12:29 Preparing metadata (pyproject.toml): started
21:12:29 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:29 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
21:12:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
21:12:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
21:12:29 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.5)
21:12:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.0.0)
21:12:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
21:12:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
21:12:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
21:12:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
21:12:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
21:12:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
21:12:29 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
21:12:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
21:12:29 Building wheels for collected packages: omero-dropbox
21:12:29 Building wheel for omero-dropbox (pyproject.toml): started
21:12:29 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
21:12:29 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=9b80df2b52ed47e64c2246bd25427a54269a667376220a2e4e2b5658cd7e8956
21:12:29 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
21:12:29 Successfully built omero-dropbox
21:12:29 Installing collected packages: omero-dropbox
21:12:29 Successfully installed omero-dropbox-5.7.1.dev0
21:12:29 + for x in *.tar.gz
21:12:29 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
21:12:30 Processing ./omero_marshal-0.9.2.dev0.tar.gz
21:12:30 Installing build dependencies: started
21:12:30 Installing build dependencies: finished with status 'done'
21:12:30 Getting requirements to build wheel: started
21:12:31 Getting requirements to build wheel: finished with status 'done'
21:12:31 Preparing metadata (pyproject.toml): started
21:12:31 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:31 Building wheels for collected packages: omero_marshal
21:12:31 Building wheel for omero_marshal (pyproject.toml): started
21:12:31 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
21:12:31 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=9fe624099e575e04a7f3a428d322ea18288b6fb31b60d285a6af041f2b54d742
21:12:31 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
21:12:31 Successfully built omero_marshal
21:12:31 Installing collected packages: omero_marshal
21:12:31 Successfully installed omero_marshal-0.9.2.dev0
21:12:31 + for x in *.tar.gz
21:12:31 + pip install -U omero_py-5.22.0.dev0.tar.gz
21:12:32 Processing ./omero_py-5.22.0.dev0.tar.gz
21:12:32 Installing build dependencies: started
21:12:33 Installing build dependencies: finished with status 'done'
21:12:33 Getting requirements to build wheel: started
21:12:33 Getting requirements to build wheel: finished with status 'done'
21:12:33 Preparing metadata (pyproject.toml): started
21:12:33 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:33 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
21:12:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
21:12:33 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.3.5)
21:12:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0)
21:12:33 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
21:12:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
21:12:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
21:12:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
21:12:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
21:12:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
21:12:33 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
21:12:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
21:12:33 Building wheels for collected packages: omero-py
21:12:33 Building wheel for omero-py (pyproject.toml): started
21:12:34 Building wheel for omero-py (pyproject.toml): finished with status 'done'
21:12:34 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=21dd5645f63395c80952fee84b011e53f1d0cae7f6283da81470bc6400d70aca
21:12:34 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
21:12:34 Successfully built omero-py
21:12:35 Installing collected packages: omero-py
21:12:35 Attempting uninstall: omero-py
21:12:35 Found existing installation: omero-py 5.21.3
21:12:35 Uninstalling omero-py-5.21.3:
21:12:35 Successfully uninstalled omero-py-5.21.3
21:12:37 Successfully installed omero-py-5.22.0.dev0
21:12:37 + for x in *.tar.gz
21:12:37 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
21:12:37 Processing ./omero_scripts-5.9.2.dev0.tar.gz
21:12:37 Installing build dependencies: started
21:12:38 Installing build dependencies: finished with status 'done'
21:12:38 Getting requirements to build wheel: started
21:12:38 Getting requirements to build wheel: finished with status 'done'
21:12:38 Preparing metadata (pyproject.toml): started
21:12:38 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:38 Building wheels for collected packages: omero-scripts
21:12:38 Building wheel for omero-scripts (pyproject.toml): started
21:12:39 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
21:12:39 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=a1cfb37d71aaf1c4eeab1be12fdf242f1bf4c342d6e129e1029cc70aefa04115
21:12:39 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
21:12:39 Successfully built omero-scripts
21:12:39 Installing collected packages: omero-scripts
21:12:39 Successfully installed omero-scripts-5.9.2.dev0
21:12:39 + for x in *.tar.gz
21:12:39 + pip install -U omero_web-5.30.1.dev0.tar.gz
21:12:39 Processing ./omero_web-5.30.1.dev0.tar.gz
21:12:40 Installing build dependencies: started
21:12:40 Installing build dependencies: finished with status 'done'
21:12:40 Getting requirements to build wheel: started
21:12:41 Getting requirements to build wheel: finished with status 'done'
21:12:41 Preparing metadata (pyproject.toml): started
21:12:41 Preparing metadata (pyproject.toml): finished with status 'done'
21:12:41 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
21:12:41 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
21:12:41 Downloading concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
21:12:41 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
21:12:41 Downloading django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
21:12:42 Collecting django-pipeline (from omero-web==5.30.1.dev0)
21:12:42 Downloading django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
21:12:42 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
21:12:42 Downloading django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
21:12:42 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
21:12:42 Downloading whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
21:12:42 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
21:12:42 Downloading gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
21:12:42 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
21:12:42 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0)
21:12:42 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (2025.2)
21:12:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
21:12:42 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
21:12:42 Collecting importlib-resources (from omero-web==5.30.1.dev0)
21:12:42 Downloading importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
21:12:42 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
21:12:42 Downloading asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
21:12:42 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
21:12:42 Downloading sqlparse-0.5.4-py3-none-any.whl.metadata (4.7 kB)
21:12:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
21:12:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
21:12:42 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.3.5)
21:12:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
21:12:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
21:12:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
21:12:42 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (65.5.1)
21:12:42 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
21:12:42 Downloading wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
21:12:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
21:12:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
21:12:42 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
21:12:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
21:12:42 Downloading django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
21:12:42 Downloading django-5.2.9-py3-none-any.whl (8.3 MB)
21:12:43 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 19.8 MB/s 0:00:00
21:12:43 Downloading asgiref-3.11.0-py3-none-any.whl (24 kB)
21:12:43 Downloading concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
21:12:43 Downloading gunicorn-23.0.0-py3-none-any.whl (85 kB)
21:12:43 Downloading sqlparse-0.5.4-py3-none-any.whl (45 kB)
21:12:43 Downloading whitenoise-6.11.0-py3-none-any.whl (20 kB)
21:12:43 Downloading django_pipeline-4.1.0-py3-none-any.whl (75 kB)
21:12:43 Downloading importlib_resources-6.5.2-py3-none-any.whl (37 kB)
21:12:43 Downloading wheel-0.45.1-py3-none-any.whl (72 kB)
21:12:43 Building wheels for collected packages: omero-web
21:12:43 Building wheel for omero-web (pyproject.toml): started
21:12:44 Building wheel for omero-web (pyproject.toml): finished with status 'done'
21:12:44 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819190 sha256=87e30ddfc0284a9f1c7a13c386698d36eb073465b43fdbda946b5d12b14b1596
21:12:44 Stored in directory: /home/omero/.cache/pip/wheels/55/56/8c/76994afd7450bff12c009b26528517ee8944f8f2e1a40edc6c
21:12:44 Successfully built omero-web
21:12:44 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
21:12:47
21:12:47 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 sqlparse-0.5.4 wheel-0.45.1 whitenoise-6.11.0
21:12:47 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
21:12:47 --2025-12-17 21:12:47-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
21:12:47 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.108.133, ...
21:12:47 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
21:12:47 HTTP request sent, awaiting response... 200 OK
21:12:47 Length: 126482 (124K) [text/plain]
21:12:47 Saving to: ‘Figure_To_Pdf.py’
21:12:47
21:12:47 0K .......... .......... .......... .......... .......... 40% 3.94M 0s
21:12:47 50K .......... .......... .......... .......... .......... 80% 5.85M 0s
21:12:47 100K .......... .......... ... 100% 62.2M=0.02s
21:12:47
21:12:47 2025-12-17 21:12:47 (5.72 MB/s) - ‘Figure_To_Pdf.py’ saved [126482/126482]
21:12:47
21:12:47 + chmod 755 Figure_To_Pdf.py
21:12:47 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
21:12:47 + omero config set omero.db.name OMERO-server
21:12:48 + omero config set omero.db.host pg
21:12:49 + omero config set omero.db.user postgres
21:12:51 + omero config set omero.data.dir /home/omero/omero-server-data
21:12:52 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
21:12:53 + omero config set omero.db.poolsize 25
21:12:54 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
21:12:55 + omero config set omero.security.trustStorePassword changeit
21:12:56 + omero config set omero.mail.config true
21:12:57 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
21:12:58 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
21:13:00 + omero certificates
21:13:01 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
21:13:01 certificates created: /home/omero/omero-server-data/certs/server.key /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
21:13:01 + '[' false = true ']'
21:13:01 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
21:13:01 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
21:13:01 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
21:13:01 2025-12-17 21:13:01,476 [ omego.db] DEBUG dbcommand => upgrade
21:13:01 2025-12-17 21:13:01,476 [ omego.db] DEBUG dbhost => localhost
21:13:01 2025-12-17 21:13:01,476 [ omego.db] DEBUG dbname => OMERO-server
21:13:01 2025-12-17 21:13:01,476 [ omego.db] DEBUG dbpass => omero
21:13:01 2025-12-17 21:13:01,476 [ omego.db] DEBUG dbuser => omero
21:13:01 2025-12-17 21:13:01,476 [ omego.db] DEBUG rootpass => omero
21:13:01 2025-12-17 21:13:01,476 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
21:13:01 2025-12-17 21:13:01,476 [omego.extern] INFO Executing : omero version
21:13:02 OMERO.py version:
21:13:02 OMERO.server version:
21:13:02 5.6.3-576-82ef22269e-ice36-b1
21:13:02 5.22.0.dev0
21:13:02 2025-12-17 21:13:02,649 [omego.extern] INFO Completed [1.173 s]
21:13:02 2025-12-17 21:13:02,650 [omego.extern] DEBUG Using omero CLI from omero
21:13:02 2025-12-17 21:13:02,650 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
21:13:02 2025-12-17 21:13:02,650 [omego.extern] INFO Running [current environment]: omero config get --show-password
21:13:02 2025-12-17 21:13:02,650 [omego.extern] INFO Executing : omero config get --show-password
21:13:03 2025-12-17 21:13:03,768 [omego.extern] INFO Completed [1.118 s]
21:13:03 2025-12-17 21:13:03,768 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
21:13:03 2025-12-17 21:13:03,768 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
21:13:03 2025-12-17 21:13:03,773 [omego.extern] INFO Completed [0.006 s]
21:13:03 2025-12-17 21:13:03,774 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
21:13:03 2025-12-17 21:13:03,774 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
21:13:03
21:13:03 2025-12-17 21:13:03,774 [omego.extern] INFO Running [current environment]: omero config get --show-password
21:13:03 2025-12-17 21:13:03,774 [omego.extern] INFO Executing : omero config get --show-password
21:13:04 2025-12-17 21:13:04,931 [omego.extern] INFO Completed [1.157 s]
21:13:04 2025-12-17 21:13:04,931 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
21:13:04 2025-12-17 21:13:04,931 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
21:13:04 2025-12-17 21:13:04,939 [omego.extern] ERROR Failed [0.008 s]
21:13:04 2025-12-17 21:13:04,939 [ omego.db] ERROR Non-zero return code
21:13:04 command: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
21:13:04 return code: 2
21:13:04 stdout: b''
21:13:04 stderr: b'psql: error: connection to server at "pg" (172.18.0.12), port 5432 failed: FATAL: database "OMERO-server" does not exist\n'
21:13:04 ERROR: Database connection check failed
21:13:04 Build step 'Execute shell' marked build as failure
21:13:05 Finished: FAILURE
