01:36:21 Started by upstream project "Trigger" build number 12
01:36:21 originally caused by:
01:36:21 Started by timer
01:36:21 Running as SYSTEM
01:36:21 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:36:21 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11927698395659999567.sh
01:36:21 + source /home/settings.env
01:36:21 ++ OMERO_DB_HOST=pg
01:36:21 ++ OMERO_DB_USER=postgres
01:36:21 ++ OMERO_DB_PASS=
01:36:21 ++ OMERO_ROOT_PASS=omero
01:36:21 ++ OMERO_DATA_DIR=/OMERO
01:36:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:36:21 + OMERO_DB_NAME=OMERO-server
01:36:21 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:36:21 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:36:21 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:36:21 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:36:21 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:36:21 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:36:21 ++ deactivate nondestructive
01:36:21 ++ '[' -n '' ']'
01:36:21 ++ '[' -n '' ']'
01:36:21 ++ hash -r
01:36:21 ++ '[' -n '' ']'
01:36:21 ++ unset VIRTUAL_ENV
01:36:21 ++ unset VIRTUAL_ENV_PROMPT
01:36:21 ++ '[' '!' nondestructive = nondestructive ']'
01:36:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:36:21 ++ export VIRTUAL_ENV
01:36:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:36:21 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:36:21 ++ export PATH
01:36:21 ++ '[' -n '' ']'
01:36:21 ++ '[' -z '' ']'
01:36:21 ++ _OLD_VIRTUAL_PS1=
01:36:21 ++ PS1='(.venv3) '
01:36:21 ++ export PS1
01:36:21 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:36:21 ++ export VIRTUAL_ENV_PROMPT
01:36:21 ++ hash -r
01:36:21 + omero admin stop
01:36:34 Waiting on shutdown. Use CTRL-C to exit
01:36:34 .+ sleep 5
01:36:49 + deactivate
01:36:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:36:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:36:49 + export PATH
01:36:49 + unset _OLD_VIRTUAL_PATH
01:36:49 + '[' -n '' ']'
01:36:49 + hash -r
01:36:49 + '[' -n '' ']'
01:36:49 + unset VIRTUAL_ENV
01:36:49 + unset VIRTUAL_ENV_PROMPT
01:36:49 + '[' '!' '' = nondestructive ']'
01:36:49 + unset -f deactivate
01:36:49 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:39:10 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
01:39:32 + '[' false = true ']'
01:39:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:39:32 Skipping PURGE_DATA:CleanDbAndRepo
01:39:32 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:39:37 Copied 1 artifact from "OMERO-build" build number 8
01:39:37 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 7
01:39:37 Copied 2 artifacts from "OMERO-build-build" build number 15
01:39:37 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7287377980490029654.sh
01:39:37 + source /home/settings.env
01:39:37 ++ OMERO_DB_HOST=pg
01:39:37 ++ OMERO_DB_USER=postgres
01:39:37 ++ OMERO_DB_PASS=
01:39:37 ++ OMERO_ROOT_PASS=omero
01:39:37 ++ OMERO_DATA_DIR=/OMERO
01:39:37 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:39:37 + OMERO_DB_NAME=OMERO-server
01:39:37 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:39:37 + mkdir -p /home/omero/omero-server-data
01:39:37 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:39:37 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:39:37 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:39:37 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:39:37 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:39:37 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:39:37 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:39:37 ++ ls OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
01:39:37 + ZIP=OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
01:39:37 + '[' '!' -z '' ']'
01:39:37 + DIST=OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8
01:39:37 + unzip OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
01:39:37 Archive: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/blitz/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/grid/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/profiles/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/error/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/grid/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/janelia/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/matplotlib/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/ncsa_paledit/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/seaborn/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/wcif/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/analysis_scripts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/annotation_scripts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/export_scripts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/figure_scripts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/import_scripts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/util_scripts/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/server/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/misc/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__1/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__10/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__11/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__2/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__3/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__4/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__5/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__6/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__7/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__8/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__9/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__4/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__5/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__6/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__7/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.1__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/t/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.3__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.4__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__1/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__2/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__3/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/var/
01:39:38 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/var/tmp/
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/LICENSE.txt
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/backup.cfg
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/blitz/mail-senders.example
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/blitz/mail-server.example
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/build.properties
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/env.bat
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/env.sh
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/hibernate.properties
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/ice.config
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/logback-cli.xml
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/logback-indexing-cli.xml
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/logback-indexing.xml
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/logback.xml
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/mime.types
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/node1.cfg
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/node2.cfg
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/omero.properties
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/profiles/psql
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/rollover.cfg
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/Windows.cfg
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/error/maintainance.html
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/grid/README
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/grid/default.xml
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/grid/templates.xml
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/grid/windefault.xml
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/ice.config
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/internal.cfg
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/master.cfg
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/robot.template
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/testdropbox.config
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/history.rst
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/OMEZarrReader.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/accessors-smart.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/activation.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/aggdesigner-algorithm.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/aircompressor.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/antlr.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/aopalliance.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/apiguardian-api.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/asm.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/avatica-core.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/avatica-metrics.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/aws-java-sdk-core.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/aws-java-sdk-kms.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/aws-java-sdk-s3.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/base.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-anim.jar
01:39:38 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-awt-util.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-bridge.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-codec.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-constants.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-css.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-dom.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-ext.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-gvt.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-i18n.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-parser.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-script.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-shared-resources.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-svg-dom.jar
01:39:39 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/batik-svggen.jar
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01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__6/OMERO3A__5.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__8/OMERO3A__6.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__9/OMERO3A__8.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__4/OMERO3__1.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__5/OMERO3__4.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__6/OMERO3__5.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__7/OMERO3__6.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:39:51 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:39:52 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:39:52 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:39:52 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql
01:39:52 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql
01:39:52 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/schema.sql
01:39:52 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/views.sql
01:39:52 + rm -f OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
01:39:52 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8 /home/omero/workspace/OMERO-server/OMERO.server
01:39:52 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:39:52 ++ deactivate nondestructive
01:39:52 ++ '[' -n '' ']'
01:39:52 ++ '[' -n '' ']'
01:39:52 ++ hash -r
01:39:52 ++ '[' -n '' ']'
01:39:52 ++ unset VIRTUAL_ENV
01:39:52 ++ unset VIRTUAL_ENV_PROMPT
01:39:52 ++ '[' '!' nondestructive = nondestructive ']'
01:39:52 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:39:52 ++ export VIRTUAL_ENV
01:39:52 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:39:52 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:39:52 ++ export PATH
01:39:52 ++ '[' -n '' ']'
01:39:52 ++ '[' -z '' ']'
01:39:52 ++ _OLD_VIRTUAL_PS1=
01:39:52 ++ PS1='(.venv3) '
01:39:52 ++ export PS1
01:39:52 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:39:52 ++ export VIRTUAL_ENV_PROMPT
01:39:52 ++ hash -r
01:39:52 + pip install -U pip
01:39:53 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
01:39:53 Collecting pip
01:39:53 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
01:39:53 Installing collected packages: pip
01:39:53 Attempting uninstall: pip
01:39:53 Found existing installation: pip 22.3.1
01:39:54 Uninstalling pip-22.3.1:
01:39:54 Successfully uninstalled pip-22.3.1
01:40:08 Successfully installed pip-26.1.2
01:40:08 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:40:09 Collecting zeroc-ice==3.6.5
01:40:10 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:40:13 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.9 MB/s 0:00:02
01:40:13 Installing collected packages: zeroc-ice
01:40:16 Successfully installed zeroc-ice-3.6.5
01:40:16 + pip install markdown
01:40:17 Collecting markdown
01:40:17 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
01:40:17 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
01:40:17 Installing collected packages: markdown
01:40:18 Successfully installed markdown-3.10.2
01:40:19 + pip install reportlab
01:40:20 Collecting reportlab
01:40:20 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
01:40:20 Collecting pillow>=9.0.0 (from reportlab)
01:40:20 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:40:20 Collecting charset-normalizer (from reportlab)
01:40:20 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
01:40:20 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB)
01:40:20 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:40:20 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:40:20 Installing collected packages: pillow, charset-normalizer, reportlab
01:40:28
01:40:28 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0
01:40:29 + pip install omego
01:40:30 Collecting omego
01:40:30 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
01:40:30 Collecting future (from omego)
01:40:30 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
01:40:30 Collecting yaclifw>=0.1.1 (from omego)
01:40:30 Using cached yaclifw-0.2.0-py3-none-any.whl
01:40:30 Collecting six (from yaclifw>=0.1.1->omego)
01:40:30 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:40:30 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
01:40:30 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:40:30 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:40:30 Installing collected packages: six, future, yaclifw, omego
01:40:35
01:40:35 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
01:40:36 + pip install tables
01:40:37 Collecting tables
01:40:37 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
01:40:37 Collecting numpy>=1.20.0 (from tables)
01:40:37 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
01:40:37 Collecting numexpr>=2.6.2 (from tables)
01:40:37 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
01:40:37 Collecting packaging (from tables)
01:40:37 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
01:40:37 Collecting py-cpuinfo (from tables)
01:40:37 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:40:38 Collecting blosc2>=2.3.0 (from tables)
01:40:38 Using cached blosc2-4.8.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
01:40:38 Collecting ndindex (from blosc2>=2.3.0->tables)
01:40:38 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
01:40:38 Collecting msgpack (from blosc2>=2.3.0->tables)
01:40:38 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
01:40:38 Collecting pydantic (from blosc2>=2.3.0->tables)
01:40:38 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
01:40:38 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
01:40:38 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
01:40:39 Collecting rich (from blosc2>=2.3.0->tables)
01:40:39 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
01:40:39 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
01:40:39 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
01:40:39 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
01:40:39 Downloading anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
01:40:39 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
01:40:39 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
01:40:39 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
01:40:40 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
01:40:40 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
01:40:40 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
01:40:40 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
01:40:40 Using cached h2-4.3.0-py3-none-any.whl.metadata (5.1 kB)
01:40:40 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
01:40:40 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
01:40:40 Collecting hpack<5,>=4.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
01:40:40 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
01:40:40 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
01:40:40 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
01:40:40 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
01:40:40 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
01:40:40 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
01:40:40 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
01:40:41 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
01:40:41 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
01:40:41 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
01:40:41 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
01:40:41 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
01:40:41 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
01:40:42 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
01:40:42 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
01:40:42 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
01:40:42 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
01:40:42 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
01:40:42 Using cached blosc2-4.8.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB)
01:40:42 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
01:40:42 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:40:42 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
01:40:42 Using cached h2-4.3.0-py3-none-any.whl (61 kB)
01:40:42 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
01:40:42 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
01:40:42 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
01:40:42 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
01:40:42 Downloading anyio-4.14.2-py3-none-any.whl (125 kB)
01:40:42 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:40:42 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
01:40:42 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
01:40:42 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
01:40:42 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
01:40:42 Using cached packaging-26.2-py3-none-any.whl (100 kB)
01:40:42 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:40:42 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
01:40:42 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
01:40:42 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
01:40:42 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
01:40:42 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
01:40:42 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
01:40:42 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
01:40:42 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
01:40:42 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
01:40:43 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
01:41:28
01:41:28 Successfully installed annotated-types-0.7.0 anyio-4.14.2 blosc2-4.8.0 certifi-2026.6.17 h11-0.16.0 h2-4.3.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
01:41:28 + pip install jinja2
01:41:30 Collecting jinja2
01:41:30 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
01:41:30 Collecting MarkupSafe>=2.0 (from jinja2)
01:41:30 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
01:41:30 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
01:41:30 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
01:41:30 Installing collected packages: MarkupSafe, jinja2
01:41:31
01:41:31 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
01:41:31 + pip install omero-py
01:41:32 Collecting omero-py
01:41:32 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
01:41:32 Collecting appdirs (from omero-py)
01:41:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:41:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
01:41:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
01:41:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
01:41:32 Collecting PyYAML (from omero-py)
01:41:32 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
01:41:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:41:32 Collecting requests (from omero-py)
01:41:32 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
01:41:32 Collecting portalocker (from omero-py)
01:41:32 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
01:41:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9)
01:41:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
01:41:33 Collecting urllib3<3,>=1.26 (from requests->omero-py)
01:41:33 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
01:41:33 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.6.17)
01:41:33 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
01:41:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:41:33 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
01:41:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:41:33 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:41:33 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:41:33 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
01:41:51
01:41:51 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0
01:41:51 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:41:51 Collecting omero-metadata
01:41:51 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-8yn8f37t/omero-metadata_2e5d10f8ad4f43cdbfce5fe512e2e346
01:41:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-8yn8f37t/omero-metadata_2e5d10f8ad4f43cdbfce5fe512e2e346
01:41:52 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e4a685d333c1c62b1a717263e18318edab42455a
01:41:52 Installing build dependencies: started
01:41:54 Installing build dependencies: finished with status 'done'
01:41:54 Getting requirements to build wheel: started
01:41:54 Getting requirements to build wheel: finished with status 'done'
01:41:54 Preparing metadata (pyproject.toml): started
01:41:54 Preparing metadata (pyproject.toml): finished with status 'done'
01:41:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
01:41:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
01:41:54 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
01:41:55 Collecting pandas (from omero-metadata)
01:41:55 Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
01:41:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:41:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:41:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6)
01:41:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
01:41:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:41:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
01:41:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
01:41:55 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
01:41:55 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:41:55 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:41:55 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
01:41:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9)
01:41:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
01:41:55 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
01:41:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.6.17)
01:41:55 Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
01:41:55 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:41:55 Building wheels for collected packages: omero-metadata
01:41:55 Building wheel for omero-metadata (pyproject.toml): started
01:41:55 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:41:55 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=bc5736a57ada71998094e2c172ab28c484a800741e5d0aa7b6df9ffd5109124a
01:41:55 Stored in directory: /tmp/pip-ephem-wheel-cache-90khlzu9/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
01:41:55 Successfully built omero-metadata
01:41:55 Installing collected packages: python-dateutil, pandas, omero-metadata
01:42:35
01:42:35 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.3 python-dateutil-2.9.0.post0
01:42:35 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:42:36 Collecting omero-cli-render
01:42:36 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-2jutw4as/omero-cli-render_1ef2dab87b684359be0e2f0f9abee3d2
01:42:36 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-2jutw4as/omero-cli-render_1ef2dab87b684359be0e2f0f9abee3d2
01:42:37 Running command git checkout -b merge_ci --track origin/merge_ci
01:42:37 Switched to a new branch 'merge_ci'
01:42:37 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:42:37 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a27afa9d979ab1d7f427c7118a45f988c39de536
01:42:37 Installing build dependencies: started
01:42:38 Installing build dependencies: finished with status 'done'
01:42:38 Getting requirements to build wheel: started
01:42:39 Getting requirements to build wheel: finished with status 'done'
01:42:39 Preparing metadata (pyproject.toml): started
01:42:39 Preparing metadata (pyproject.toml): finished with status 'done'
01:42:39 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
01:42:39 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
01:42:39 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:42:39 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:42:39 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
01:42:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
01:42:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:42:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
01:42:39 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
01:42:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9)
01:42:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
01:42:39 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
01:42:39 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.6.17)
01:42:39 Building wheels for collected packages: omero-cli-render
01:42:39 Building wheel for omero-cli-render (pyproject.toml): started
01:42:39 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:42:39 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=90637e4f7dd36d54496b6751d2aa8974ab07729a659d1e6169b56e02f791ac83
01:42:39 Stored in directory: /tmp/pip-ephem-wheel-cache-5hunyxfk/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
01:42:39 Successfully built omero-cli-render
01:42:39 Installing collected packages: omero-cli-render
01:42:39 Successfully installed omero-cli-render-0.8.2.dev0
01:42:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:42:40 Collecting omero-cli-duplicate
01:42:40 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-vvc7r9hv/omero-cli-duplicate_757b67e8226e41d58cbc7f1235dd39d3
01:42:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-vvc7r9hv/omero-cli-duplicate_757b67e8226e41d58cbc7f1235dd39d3
01:42:41 Running command git checkout -b merge_ci --track origin/merge_ci
01:42:42 Switched to a new branch 'merge_ci'
01:42:42 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:42:42 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 257524cb0bc76ca52c5a38bc6eb7d2b44f50da8d
01:42:42 Installing build dependencies: started
01:42:43 Installing build dependencies: finished with status 'done'
01:42:43 Getting requirements to build wheel: started
01:42:43 Getting requirements to build wheel: finished with status 'done'
01:42:43 Preparing metadata (pyproject.toml): started
01:42:43 Preparing metadata (pyproject.toml): finished with status 'done'
01:42:43 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
01:42:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:42:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:42:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
01:42:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
01:42:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
01:42:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:42:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
01:42:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
01:42:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
01:42:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
01:42:43 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
01:42:43 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.6.17)
01:42:43 Building wheels for collected packages: omero-cli-duplicate
01:42:43 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:42:44 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:42:44 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=1a4ceaaaf4106375d61e350f53483f38a01550b16baa0d33d0a13a19875da1ae
01:42:44 Stored in directory: /tmp/pip-ephem-wheel-cache-d1we1k91/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
01:42:44 Successfully built omero-cli-duplicate
01:42:44 Installing collected packages: omero-cli-duplicate
01:42:44 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:42:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
01:42:45 Collecting omero-cli-zarr
01:42:45 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-kex3iuof/omero-cli-zarr_d6a833428f2e4ba1a7d1c02e2737a839
01:42:45 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-kex3iuof/omero-cli-zarr_d6a833428f2e4ba1a7d1c02e2737a839
01:42:46 Running command git checkout -b merge_ci --track origin/merge_ci
01:42:46 Switched to a new branch 'merge_ci'
01:42:46 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:42:46 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 388805ea54f59dbc1e3942421806a6955b61c34b
01:42:46 Installing build dependencies: started
01:42:47 Installing build dependencies: finished with status 'done'
01:42:47 Getting requirements to build wheel: started
01:42:48 Getting requirements to build wheel: finished with status 'done'
01:42:48 Installing backend dependencies: started
01:42:49 Installing backend dependencies: finished with status 'done'
01:42:49 Preparing metadata (pyproject.toml): started
01:42:50 Preparing metadata (pyproject.toml): finished with status 'done'
01:42:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
01:42:50 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
01:42:50 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
01:42:50 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
01:42:50 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:42:50 Using cached dask-2026.7.0-py3-none-any.whl.metadata (3.8 kB)
01:42:50 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:42:50 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
01:42:50 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:50 Using cached fsspec-2026.6.0-py3-none-any.whl.metadata (10 kB)
01:42:51 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
01:42:51 Using cached aiohttp-3.14.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
01:42:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
01:42:51 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:42:51 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
01:42:51 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
01:42:51 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
01:42:51 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
01:42:51 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
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01:42:51 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
01:42:51 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
01:42:51 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:51 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB)
01:42:52 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:52 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
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01:42:52 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:52 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
01:42:52 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
01:42:52 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:52 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
01:42:52 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:52 Using cached s3fs-2026.6.0-py3-none-any.whl.metadata (1.2 kB)
01:42:52 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:52 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
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01:42:53 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
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01:42:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
01:42:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
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01:42:53 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:53 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
01:42:53 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:53 Using cached aiobotocore-3.7.0-py3-none-any.whl.metadata (28 kB)
01:42:53 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:53 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
01:42:54 Collecting botocore<1.43.1,>=1.42.90 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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01:42:54 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:54 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
01:42:54 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:54 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
01:42:54 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:54 Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
01:42:54 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:54 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
01:42:54 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:54 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
01:42:55 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:55 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
01:42:55 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:55 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
01:42:55 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:55 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB)
01:42:55 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:55 Using cached yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (94 kB)
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01:42:55 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:55 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
01:42:55 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:55 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
01:42:55 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:55 Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB)
01:42:56 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:56 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
01:42:56 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:56 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
01:42:56 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:56 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
01:42:56 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
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01:42:56 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:42:56 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
01:42:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9)
01:42:56 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.6.17)
01:42:56 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
01:42:56 Using cached dask-2026.7.0-py3-none-any.whl (1.5 MB)
01:42:56 Using cached click-8.4.2-py3-none-any.whl (119 kB)
01:42:56 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
01:42:56 Using cached fsspec-2026.6.0-py3-none-any.whl (203 kB)
01:42:56 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
01:42:56 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
01:42:56 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
01:42:56 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
01:42:56 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
01:42:56 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
01:42:56 Using cached s3fs-2026.6.0-py3-none-any.whl (32 kB)
01:42:56 Using cached aiobotocore-3.7.0-py3-none-any.whl (89 kB)
01:42:56 Using cached aiohttp-3.14.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
01:42:56 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
01:42:56 Using cached botocore-1.43.0-py3-none-any.whl (15.0 MB)
01:42:56 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
01:42:56 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
01:42:56 Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (159 kB)
01:42:56 Using cached yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (106 kB)
01:42:56 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
01:42:56 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
01:42:56 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
01:42:56 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
01:42:56 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
01:42:56 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
01:42:56 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
01:42:56 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
01:42:56 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
01:42:56 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
01:42:56 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
01:42:56 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
01:42:56 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
01:42:57 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
01:42:57 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
01:42:57 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
01:42:57 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
01:42:57 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
01:42:57 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
01:42:57 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
01:42:57 Building wheels for collected packages: omero-cli-zarr
01:42:57 Building wheel for omero-cli-zarr (pyproject.toml): started
01:42:57 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
01:42:57 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g388805e-py3-none-any.whl size=38289 sha256=705a70bd07758201fd0daadf1f673df5150e0ff31be01737333acce0c0986222
01:42:57 Stored in directory: /tmp/pip-ephem-wheel-cache-qcz2u6tj/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
01:42:57 Successfully built omero-cli-zarr
01:42:57 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
01:43:31 Attempting uninstall: pydantic-core
01:43:31 Found existing installation: pydantic_core 2.46.4
01:43:31 Uninstalling pydantic_core-2.46.4:
01:43:31 Successfully uninstalled pydantic_core-2.46.4
01:44:04 Attempting uninstall: pydantic
01:44:04 Found existing installation: pydantic 2.13.4
01:44:05 Uninstalling pydantic-2.13.4:
01:44:05 Successfully uninstalled pydantic-2.13.4
01:44:42
01:44:43 Successfully installed Deprecated-1.3.1 aiobotocore-3.7.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.1 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.0 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.6.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev162+g388805e partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.6.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.2.2 yarl-1.24.2 zarr-3.1.6 zipp-4.1.0
01:44:43 + pip install omero-certificates
01:44:44 Collecting omero-certificates
01:44:44 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
01:44:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
01:44:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:44:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:44:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
01:44:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
01:44:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
01:44:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:44:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
01:44:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
01:44:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
01:44:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
01:44:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
01:44:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.6.17)
01:44:44 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
01:44:44 Installing collected packages: omero-certificates
01:44:45 Successfully installed omero-certificates-0.4.0
01:44:45 + for x in *.tar.gz
01:44:45 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:44:45 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:44:45 Installing build dependencies: started
01:44:47 Installing build dependencies: finished with status 'done'
01:44:47 Getting requirements to build wheel: started
01:44:47 Getting requirements to build wheel: finished with status 'done'
01:44:47 Preparing metadata (pyproject.toml): started
01:44:47 Preparing metadata (pyproject.toml): finished with status 'done'
01:44:47 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
01:44:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:44:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:44:47 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
01:44:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
01:44:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
01:44:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:44:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
01:44:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
01:44:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
01:44:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
01:44:47 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
01:44:47 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
01:44:47 Building wheels for collected packages: omero-dropbox
01:44:48 Building wheel for omero-dropbox (pyproject.toml): started
01:44:48 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:44:48 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=569e46548434eb3468a2ce5d439ab7a7969c4e4de72752300eaa70a6f464fbaf
01:44:48 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
01:44:48 Successfully built omero-dropbox
01:44:48 Installing collected packages: omero-dropbox
01:44:49 Successfully installed omero-dropbox-5.7.1.dev0
01:44:49 + for x in *.tar.gz
01:44:49 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
01:44:50 Processing ./omero_marshal-0.9.2.dev0.tar.gz
01:44:50 Installing build dependencies: started
01:44:51 Installing build dependencies: finished with status 'done'
01:44:51 Getting requirements to build wheel: started
01:44:51 Getting requirements to build wheel: finished with status 'done'
01:44:51 Preparing metadata (pyproject.toml): started
01:44:52 Preparing metadata (pyproject.toml): finished with status 'done'
01:44:52 Building wheels for collected packages: omero_marshal
01:44:52 Building wheel for omero_marshal (pyproject.toml): started
01:44:52 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:44:52 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=8a5e343f81921daec3fd9bcf50f631edb29c0082ac443c97dbc664219aed0109
01:44:52 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
01:44:52 Successfully built omero_marshal
01:44:52 Installing collected packages: omero_marshal
01:44:55 Successfully installed omero_marshal-0.9.2.dev0
01:44:55 + for x in *.tar.gz
01:44:55 + pip install -U omero_py-5.22.2.dev0.tar.gz
01:44:55 Processing ./omero_py-5.22.2.dev0.tar.gz
01:44:56 Installing build dependencies: started
01:44:57 Installing build dependencies: finished with status 'done'
01:44:57 Getting requirements to build wheel: started
01:44:57 Getting requirements to build wheel: finished with status 'done'
01:44:57 Preparing metadata (pyproject.toml): started
01:44:58 Preparing metadata (pyproject.toml): finished with status 'done'
01:44:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
01:44:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
01:44:58 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
01:44:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
01:44:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
01:44:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
01:44:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
01:44:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
01:44:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
01:44:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
01:44:58 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
01:44:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
01:44:58 Building wheels for collected packages: omero-py
01:44:58 Building wheel for omero-py (pyproject.toml): started
01:44:59 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:44:59 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=41c678fe2ae943ec242371cf867278e8f57ac5a116661f23f752e1854f7187de
01:44:59 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
01:44:59 Successfully built omero-py
01:44:59 Installing collected packages: omero-py
01:44:59 Attempting uninstall: omero-py
01:44:59 Found existing installation: omero-py 5.22.1
01:45:00 Uninstalling omero-py-5.22.1:
01:45:10 Successfully uninstalled omero-py-5.22.1
01:45:25 Successfully installed omero-py-5.22.2.dev0
01:45:25 + for x in *.tar.gz
01:45:25 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
01:45:26 Processing ./omero_scripts-5.10.1.dev0.tar.gz
01:45:26 Installing build dependencies: started
01:45:27 Installing build dependencies: finished with status 'done'
01:45:27 Getting requirements to build wheel: started
01:45:28 Getting requirements to build wheel: finished with status 'done'
01:45:28 Preparing metadata (pyproject.toml): started
01:45:28 Preparing metadata (pyproject.toml): finished with status 'done'
01:45:28 Building wheels for collected packages: omero-scripts
01:45:28 Building wheel for omero-scripts (pyproject.toml): started
01:45:28 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:45:28 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=7b794a67f5b27a5f852060b68e6ca3f867d5ac316692cd0e73679fee7e595e89
01:45:28 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
01:45:28 Successfully built omero-scripts
01:45:29 Installing collected packages: omero-scripts
01:45:29 Successfully installed omero-scripts-5.10.1.dev0
01:45:29 + for x in *.tar.gz
01:45:29 + pip install -U omero_web-5.32.1.dev0.tar.gz
01:45:30 Processing ./omero_web-5.32.1.dev0.tar.gz
01:45:30 Installing build dependencies: started
01:45:32 Installing build dependencies: finished with status 'done'
01:45:32 Getting requirements to build wheel: started
01:45:32 Getting requirements to build wheel: finished with status 'done'
01:45:32 Preparing metadata (pyproject.toml): started
01:45:32 Preparing metadata (pyproject.toml): finished with status 'done'
01:45:32 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
01:45:33 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
01:45:33 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
01:45:33 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
01:45:33 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
01:45:33 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
01:45:33 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
01:45:33 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
01:45:33 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:45:33 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
01:45:33 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
01:45:33 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
01:45:33 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
01:45:33 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
01:45:33 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
01:45:33 Collecting pytz (from omero-web==5.32.1.dev0)
01:45:33 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
01:45:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
01:45:33 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
01:45:34 Collecting importlib-resources (from omero-web==5.32.1.dev0)
01:45:34 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
01:45:34 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
01:45:34 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
01:45:34 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
01:45:34 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
01:45:34 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
01:45:34 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
01:45:34 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
01:45:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
01:45:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
01:45:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
01:45:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
01:45:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
01:45:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
01:45:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
01:45:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
01:45:34 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
01:45:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
01:45:34 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:45:34 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
01:45:34 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
01:45:34 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
01:45:34 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
01:45:34 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
01:45:34 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
01:45:34 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
01:45:34 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
01:45:34 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
01:45:34 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
01:45:34 Building wheels for collected packages: omero-web
01:45:34 Building wheel for omero-web (pyproject.toml): started
01:45:35 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:45:35 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=1b8b68d83c67fa15f7273ff0f573987f558ce360390ef847cf126bfd09b5aa47
01:45:35 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
01:45:35 Successfully built omero-web
01:45:36 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
01:46:42
01:46:42 Successfully installed Django-5.2.16 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
01:46:42 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:46:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:46:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:46:42 --2026-07-13 01:46:42-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:46:42 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.111.133, ...
01:46:42 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
01:46:42 HTTP request sent, awaiting response... 200 OK
01:46:42 Length: 139337 (136K) [text/plain]
01:46:42 Saving to: ‘Figure_To_Pdf.py’
01:46:42
01:46:42 0K .......... .......... .......... .......... .......... 36% 2.89M 0s
01:46:42 50K .......... .......... .......... .......... .......... 73% 4.86M 0s
01:46:42 100K .......... .......... .......... ...... 100% 6.58M=0.03s
01:46:42
01:46:42 2026-07-13 01:46:42 (4.11 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
01:46:42
01:46:42 + chmod 755 Figure_To_Pdf.py
01:46:42 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:46:42 + omero config set omero.db.name OMERO-server
01:46:49 + omero config set omero.db.host pg
01:46:54 + omero config set omero.db.user postgres
01:46:59 + omero config set omero.data.dir /home/omero/omero-server-data
01:47:04 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:47:09 + omero config set omero.db.poolsize 25
01:47:14 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:47:18 + omero config set omero.security.trustStorePassword changeit
01:47:23 + omero config set omero.mail.config true
01:47:27 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:47:32 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:47:37 + omero certificates
01:47:42 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
01:47:42 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:47:42 + '[' false = true ']'
01:47:42 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:47:42 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:47:42 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:47:43 2026-07-13 01:47:43,115 [ omego.db] DEBUG dbcommand => upgrade
01:47:43 2026-07-13 01:47:43,115 [ omego.db] DEBUG dbhost => localhost
01:47:43 2026-07-13 01:47:43,115 [ omego.db] DEBUG dbname => OMERO-server
01:47:43 2026-07-13 01:47:43,115 [ omego.db] DEBUG dbpass => omero
01:47:43 2026-07-13 01:47:43,115 [ omego.db] DEBUG dbuser => omero
01:47:43 2026-07-13 01:47:43,115 [ omego.db] DEBUG rootpass => omero
01:47:43 2026-07-13 01:47:43,115 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:47:43 2026-07-13 01:47:43,116 [omego.extern] INFO Executing : omero version
01:47:47 OMERO.py version:
01:47:47 OMERO.server version:
01:47:47 5.6.3-614-b0d2e0b22b-ice36-b8
01:47:47 5.22.2.dev0
01:47:48 2026-07-13 01:47:48,240 [omego.extern] INFO Completed [5.124 s]
01:47:48 2026-07-13 01:47:48,240 [omego.extern] DEBUG Using omero CLI from omero
01:47:48 2026-07-13 01:47:48,240 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:47:48 2026-07-13 01:47:48,240 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:47:48 2026-07-13 01:47:48,240 [omego.extern] INFO Executing : omero config get --show-password
01:47:53 2026-07-13 01:47:53,331 [omego.extern] INFO Completed [5.091 s]
01:47:53 2026-07-13 01:47:53,331 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:47:53 2026-07-13 01:47:53,331 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:47:53 2026-07-13 01:47:53,338 [omego.extern] INFO Completed [0.006 s]
01:47:53 2026-07-13 01:47:53,338 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
01:47:53 2026-07-13 01:47:53,338 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
01:47:53
01:47:53 2026-07-13 01:47:53,338 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:47:53 2026-07-13 01:47:53,338 [omego.extern] INFO Executing : omero config get --show-password
01:47:58 2026-07-13 01:47:58,580 [omego.extern] INFO Completed [5.242 s]
01:47:58 2026-07-13 01:47:58,580 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:47:58 2026-07-13 01:47:58,580 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:47:58 2026-07-13 01:47:58,597 [omego.extern] INFO Completed [0.017 s]
01:47:58 2026-07-13 01:47:58,597 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
01:47:58 2026-07-13 01:47:58,597 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:47:58 2026-07-13 01:47:58,597 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:47:58 2026-07-13 01:47:58,597 [omego.extern] INFO Executing : omero config get --show-password
01:48:03 2026-07-13 01:48:03,965 [omego.extern] INFO Completed [5.368 s]
01:48:03 2026-07-13 01:48:03,965 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:48:03 2026-07-13 01:48:03,965 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:48:03 2026-07-13 01:48:03,994 [omego.extern] INFO Completed [0.029 s]
01:48:03 2026-07-13 01:48:03,994 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:48:03 2026-07-13 01:48:03,994 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
01:48:04 2026-07-13 01:48:04,040 [ omego.db] INFO Database is already at OMERO5.4__0
01:48:04 + export LANG=en_US.UTF-8
01:48:04 + LANG=en_US.UTF-8
01:48:04 + export LANGUAGE=en_US:en
01:48:04 + LANGUAGE=en_US:en
01:48:04 + export LC_ALL=en_US.UTF-8
01:48:04 + LC_ALL=en_US.UTF-8
01:48:04 + BUILD_ID=DONT_KILL_ME
01:48:04 + omero admin start
01:48:14 No descriptor given. Using etc/grid/default.xml
01:48:24 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:48:24 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:48:24 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:48:24 Waiting on startup. Use CTRL-C to exit
01:48:25 + omero admin waitup
01:48:29 Waiting on startup. Use CTRL-C to exit
01:48:30 + omero admin diagnostics
01:48:34
01:48:34 ================================================================================
01:48:34 OMERO Diagnostics (admin)
01:48:34 ================================================================================
01:48:34
01:48:34 Commands: java -version 21.0.11 (/usr/bin/java)
01:48:34 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:48:34 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:48:34 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:48:34 Commands: psql --version 16.14 (/usr/bin/psql)
01:48:34 Commands: openssl version 3.5.527 (/usr/bin/openssl)
01:48:34
01:48:34 Component: OMERO.py 5.22.2.dev0
01:48:34 Component: OMERO.server 5.6.3-614-b0d2e0b22b-ice36-b8
01:48:34
01:48:34 Server: icegridnode running
01:48:34 Server: Blitz-0 active (pid = 40167, enabled)
01:48:34 Server: Indexer-0 active (pid = 40209, enabled)
01:48:34 Server: OMERO.Glacier2 active (pid = 40189, enabled)
01:48:34 Server: OMERO.IceStorm active (pid = 40191, enabled)
01:48:34 Server: Processor-0 active (pid = 40228, enabled)
01:48:34 Server: Tables-0 active (pid = 40211, enabled)
01:48:34
01:48:34 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:48:34 Log files: Blitz-0.log 32.1 KB errors=0 warnings=1
01:48:34 Log files: DropBox.log n/a
01:48:34 Log files: FileServer.log n/a
01:48:34 Log files: Indexer-0.log 2.6 KB
01:48:34 Log files: MonitorServer.log n/a
01:48:34 Log files: Processor-0.log 735 B
01:48:34 Log files: Tables-0.log 961 B
01:48:34 Log files: TestDropBox.log n/a
01:48:34 Log files: master.err empty
01:48:34 Log files: master.out 30.5 KB
01:48:34 Log files: Total size 0.07 MB
01:48:34
01:48:34
01:48:34 Environment:OMERO_HOME=(unset)
01:48:34 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:48:34 Environment:OMERO_NODE=(unset)
01:48:34 Environment:OMERO_MASTER=(unset)
01:48:34 Environment:OMERO_USERDIR=(unset)
01:48:34 Environment:OMERO_TMPDIR=(unset)
01:48:34 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:48:34 Environment:PYTHONPATH=(unset)
01:48:34 Environment:ICE_HOME=/opt/ice-3.6.5
01:48:34 Environment:LD_LIBRARY_PATH=(unset)
01:48:34 Environment:DYLD_LIBRARY_PATH=(unset)
01:48:34
01:48:34 OMERO SSL port:4064
01:48:34 OMERO TCP port:4063
01:48:34 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
01:48:34 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
01:48:34
01:48:34 JVM settings: Blitz-${index} -Xmx7200m
01:48:34 JVM settings: Indexer-${index} -Xmx4800m
01:48:34 JVM settings: PixelData-${index} -Xmx7200m
01:48:34 JVM settings: Repository-${index} -Xmx4800m
01:48:35
01:48:35 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
01:48:35 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
01:48:35 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
01:48:35 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
01:48:35 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
01:48:35 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
01:48:35 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
01:48:35 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
01:48:35 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
01:48:35 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
01:48:35 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
01:48:35 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
01:48:35 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
01:48:35 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
01:48:35 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
01:48:35 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
01:48:35 + deactivate
01:48:35 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:48:35 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:48:35 + export PATH
01:48:35 + unset _OLD_VIRTUAL_PATH
01:48:35 + '[' -n '' ']'
01:48:35 + hash -r
01:48:35 + '[' -n '' ']'
01:48:35 + unset VIRTUAL_ENV
01:48:35 + unset VIRTUAL_ENV_PROMPT
01:48:35 + '[' '!' '' = nondestructive ']'
01:48:35 + unset -f deactivate
01:48:35 Finished: SUCCESS
