15:18:00 Started by upstream project "Trigger" build number 30
15:18:00 originally caused by:
15:18:00 Started by user devspace
15:18:00 Running as SYSTEM
15:18:00 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
15:18:00 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13886701710966949234.sh
15:18:00 + source /home/settings.env
15:18:00 ++ OMERO_DB_HOST=pg
15:18:00 ++ OMERO_DB_USER=postgres
15:18:00 ++ OMERO_DB_PASS=
15:18:00 ++ OMERO_ROOT_PASS=omero
15:18:00 ++ OMERO_DATA_DIR=/OMERO
15:18:00 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:18:00 + OMERO_DB_NAME=OMERO-server
15:18:00 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:18:00 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:18:00 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:18:00 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:18:00 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
15:18:00 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:18:00 ++ deactivate nondestructive
15:18:00 ++ '[' -n '' ']'
15:18:00 ++ '[' -n '' ']'
15:18:00 ++ hash -r
15:18:00 ++ '[' -n '' ']'
15:18:00 ++ unset VIRTUAL_ENV
15:18:00 ++ unset VIRTUAL_ENV_PROMPT
15:18:00 ++ '[' '!' nondestructive = nondestructive ']'
15:18:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:18:00 ++ export VIRTUAL_ENV
15:18:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:18:00 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:18:00 ++ export PATH
15:18:00 ++ '[' -n '' ']'
15:18:00 ++ '[' -z '' ']'
15:18:00 ++ _OLD_VIRTUAL_PS1=
15:18:00 ++ PS1='(.venv3) '
15:18:00 ++ export PS1
15:18:00 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
15:18:00 ++ export VIRTUAL_ENV_PROMPT
15:18:00 ++ hash -r
15:18:00 + omero admin stop
15:18:01 Server not running
15:18:01 + echo not running
15:18:01 not running
15:18:01 + sleep 5
15:18:06 + deactivate
15:18:06 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:18:06 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:18:06 + export PATH
15:18:06 + unset _OLD_VIRTUAL_PATH
15:18:06 + '[' -n '' ']'
15:18:06 + hash -r
15:18:06 + '[' -n '' ']'
15:18:06 + unset VIRTUAL_ENV
15:18:06 + unset VIRTUAL_ENV_PROMPT
15:18:06 + '[' '!' '' = nondestructive ']'
15:18:06 + unset -f deactivate
15:18:06 + rm -rf /home/omero/workspace/OMERO-server/.venv3
15:18:06 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
15:18:10 + '[' false = true ']'
15:18:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
15:18:10 Skipping PURGE_DATA:CleanDbAndRepo
15:18:10 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
15:18:12 Copied 1 artifact from "OMERO-build" build number 11
15:18:12 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 11
15:18:12 Copied 2 artifacts from "OMERO-build-build" build number 14
15:18:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14891515333238626575.sh
15:18:12 + source /home/settings.env
15:18:12 ++ OMERO_DB_HOST=pg
15:18:12 ++ OMERO_DB_USER=postgres
15:18:12 ++ OMERO_DB_PASS=
15:18:12 ++ OMERO_ROOT_PASS=omero
15:18:12 ++ OMERO_DATA_DIR=/OMERO
15:18:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
15:18:12 + OMERO_DB_NAME=OMERO-server
15:18:12 + OMERO_DATA_DIR=/home/omero/omero-server-data
15:18:12 + mkdir -p /home/omero/omero-server-data
15:18:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
15:18:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:18:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:18:12 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:18:12 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
15:18:12 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:18:12 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
15:18:12 ++ ls OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip
15:18:12 + ZIP=OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip
15:18:12 + '[' '!' -z '' ']'
15:18:12 + DIST=OMERO.server-5.6.3-578-b8f107afdf-ice36-b11
15:18:12 + unzip OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip
15:18:12 Archive: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/blitz/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/grid/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/profiles/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/error/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/janelia/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/matplotlib/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/ncsa_paledit/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/seaborn/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/wcif/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/analysis_scripts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/annotation_scripts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/export_scripts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/figure_scripts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/import_scripts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/util_scripts/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/misc/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__1/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__10/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__11/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__2/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__3/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__4/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__5/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__6/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__7/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__8/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__9/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__4/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__5/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__6/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__7/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.1__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.2__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.2__0/t/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.3__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.4__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.0__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.1__1/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.2__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__1/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__2/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__3/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/var/
15:18:12 creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/var/tmp/
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/LICENSE.txt
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/backup.cfg
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/blitz/mail-senders.example
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/blitz/mail-server.example
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/build.properties
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/env.bat
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/env.sh
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/hibernate.properties
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/ice.config
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback-cli.xml
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback-indexing-cli.xml
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback-indexing.xml
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback.xml
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/mime.types
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/node1.cfg
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/node2.cfg
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/omero.properties
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/profiles/psql
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/rollover.cfg
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/Windows.cfg
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/error/maintainance.html
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/README
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/default.xml
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/templates.xml
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/windefault.xml
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/ice.config
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/internal.cfg
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/master.cfg
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/robot.template
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/testdropbox.config
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/history.rst
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/OMEZarrReader.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/accessors-smart.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/activation.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aggdesigner-algorithm.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aircompressor.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/antlr.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aopalliance.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/apiguardian-api.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/asm.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/avatica-core.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/avatica-metrics.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aws-java-sdk-core.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aws-java-sdk-kms.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aws-java-sdk-s3.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/base.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-anim.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-awt-util.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-bridge.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-codec.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-constants.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-css.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-dom.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-ext.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-gvt.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-i18n.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-parser.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-script.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-shared-resources.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-svg-dom.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-svggen.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-transcoder.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-util.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-xml.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/btm.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/calcite-core.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/calcite-linq4j.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/cdm-core.jar
15:18:12 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/checker-qual.jar
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15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/psql-footer.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/psql-header.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/schema.sql
15:18:14 inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/views.sql
15:18:14 + rm -f OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip
15:18:14 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-578-b8f107afdf-ice36-b11 /home/omero/workspace/OMERO-server/OMERO.server
15:18:14 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
15:18:14 ++ deactivate nondestructive
15:18:14 ++ '[' -n '' ']'
15:18:14 ++ '[' -n '' ']'
15:18:14 ++ hash -r
15:18:14 ++ '[' -n '' ']'
15:18:14 ++ unset VIRTUAL_ENV
15:18:14 ++ unset VIRTUAL_ENV_PROMPT
15:18:14 ++ '[' '!' nondestructive = nondestructive ']'
15:18:14 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
15:18:14 ++ export VIRTUAL_ENV
15:18:14 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:18:14 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:18:14 ++ export PATH
15:18:14 ++ '[' -n '' ']'
15:18:14 ++ '[' -z '' ']'
15:18:14 ++ _OLD_VIRTUAL_PS1=
15:18:14 ++ PS1='(.venv3) '
15:18:14 ++ export PS1
15:18:14 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
15:18:14 ++ export VIRTUAL_ENV_PROMPT
15:18:14 ++ hash -r
15:18:14 + pip install -U pip
15:18:15 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
15:18:15 Collecting pip
15:18:15 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
15:18:15 Installing collected packages: pip
15:18:15 Attempting uninstall: pip
15:18:15 Found existing installation: pip 22.3.1
15:18:15 Uninstalling pip-22.3.1:
15:18:15 Successfully uninstalled pip-22.3.1
15:18:16 Successfully installed pip-25.3
15:18:16 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
15:18:16 Collecting zeroc-ice==3.6.5
15:18:17 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
15:18:18 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.3 MB/s 0:00:01
15:18:18 Installing collected packages: zeroc-ice
15:18:19 Successfully installed zeroc-ice-3.6.5
15:18:19 + pip install markdown
15:18:20 Collecting markdown
15:18:20 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
15:18:20 Using cached markdown-3.10-py3-none-any.whl (107 kB)
15:18:20 Installing collected packages: markdown
15:18:20 Successfully installed markdown-3.10
15:18:20 + pip install reportlab
15:18:20 Collecting reportlab
15:18:20 Using cached reportlab-4.4.7-py3-none-any.whl.metadata (1.7 kB)
15:18:21 Collecting pillow>=9.0.0 (from reportlab)
15:18:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
15:18:21 Collecting charset-normalizer (from reportlab)
15:18:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
15:18:21 Using cached reportlab-4.4.7-py3-none-any.whl (2.0 MB)
15:18:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
15:18:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
15:18:21 Installing collected packages: pillow, charset-normalizer, reportlab
15:18:22
15:18:22 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.7
15:18:22 + pip install omego
15:18:22 Collecting omego
15:18:22 Using cached omego-0.7.0-py3-none-any.whl
15:18:22 Collecting future (from omego)
15:18:22 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
15:18:22 Collecting yaclifw>=0.1.1 (from omego)
15:18:22 Using cached yaclifw-0.2.0-py3-none-any.whl
15:18:22 Collecting six (from yaclifw>=0.1.1->omego)
15:18:22 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
15:18:22 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:18:22 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
15:18:22 Installing collected packages: six, future, yaclifw, omego
15:18:23
15:18:23 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
15:18:23 + pip install tables
15:18:23 Collecting tables
15:18:23 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
15:18:23 Collecting numpy>=1.20.0 (from tables)
15:18:23 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
15:18:23 Collecting numexpr>=2.6.2 (from tables)
15:18:23 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
15:18:23 Collecting packaging (from tables)
15:18:23 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
15:18:23 Collecting py-cpuinfo (from tables)
15:18:23 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
15:18:24 Collecting blosc2>=2.3.0 (from tables)
15:18:24 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
15:18:24 Collecting typing-extensions>=4.4.0 (from tables)
15:18:24 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
15:18:24 Collecting ndindex (from blosc2>=2.3.0->tables)
15:18:24 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
15:18:24 Collecting msgpack (from blosc2>=2.3.0->tables)
15:18:24 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
15:18:24 Collecting platformdirs (from blosc2>=2.3.0->tables)
15:18:24 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
15:18:24 Collecting requests (from blosc2>=2.3.0->tables)
15:18:24 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
15:18:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
15:18:24 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
15:18:24 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
15:18:24 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
15:18:24 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
15:18:24 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
15:18:24 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
15:18:24 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
15:18:24 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
15:18:24 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
15:18:24 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB)
15:18:24 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
15:18:24 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
15:18:24 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
15:18:24 Using cached packaging-25.0-py3-none-any.whl (66 kB)
15:18:24 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
15:18:24 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
15:18:24 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
15:18:24 Using cached idna-3.11-py3-none-any.whl (71 kB)
15:18:24 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
15:18:24 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
15:18:24 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
15:18:27
15:18:27 Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.0 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2
15:18:28 + pip install jinja2
15:18:28 Collecting jinja2
15:18:28 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
15:18:28 Collecting MarkupSafe>=2.0 (from jinja2)
15:18:28 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
15:18:28 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
15:18:28 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
15:18:28 Installing collected packages: MarkupSafe, jinja2
15:18:28
15:18:28 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
15:18:28 + pip install omero-py
15:18:29 Collecting omero-py
15:18:29 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
15:18:29 Collecting appdirs (from omero-py)
15:18:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
15:18:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
15:18:29 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.0)
15:18:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
15:18:29 Collecting PyYAML (from omero-py)
15:18:29 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
15:18:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
15:18:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
15:18:29 Collecting portalocker (from omero-py)
15:18:29 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
15:18:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
15:18:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
15:18:29 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.2)
15:18:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
15:18:29 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
15:18:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:18:29 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
15:18:29 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
15:18:29 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
15:18:31
15:18:31 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
15:18:31 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
15:18:31 Collecting omero-metadata
15:18:31 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-y6msxe7f/omero-metadata_44ddcc83bda04905bba50c5f2368ea16
15:18:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-y6msxe7f/omero-metadata_44ddcc83bda04905bba50c5f2368ea16
15:18:32 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 452849eb5619a91c74298b1047aa4bc2bf30e99d
15:18:32 Installing build dependencies: started
15:18:32 Installing build dependencies: finished with status 'done'
15:18:32 Getting requirements to build wheel: started
15:18:33 Getting requirements to build wheel: finished with status 'done'
15:18:33 Preparing metadata (pyproject.toml): started
15:18:33 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:33 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
15:18:33 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
15:18:33 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
15:18:33 Collecting pandas (from omero-metadata)
15:18:33 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
15:18:33 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
15:18:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
15:18:33 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.0)
15:18:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
15:18:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
15:18:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
15:18:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
15:18:33 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
15:18:33 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
15:18:33 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
15:18:33 Collecting pytz>=2020.1 (from pandas->omero-metadata)
15:18:33 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
15:18:33 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
15:18:33 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
15:18:33 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
15:18:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
15:18:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
15:18:33 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.2)
15:18:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
15:18:33 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
15:18:33 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
15:18:33 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
15:18:33 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB)
15:18:33 Building wheels for collected packages: omero-metadata
15:18:33 Building wheel for omero-metadata (pyproject.toml): started
15:18:34 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
15:18:34 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=133dd84e843f6ba8fa5159ce92494a0dd7ed2a4fb82c6d99bad6473a797c042f
15:18:34 Stored in directory: /tmp/pip-ephem-wheel-cache-j4qe6c35/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
15:18:34 Successfully built omero-metadata
15:18:34 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
15:18:38
15:18:38 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
15:18:38 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
15:18:39 Collecting omero-cli-render
15:18:39 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-yu4f5jxv/omero-cli-render_b0970816d1754e7098898d1db7d4351b
15:18:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-yu4f5jxv/omero-cli-render_b0970816d1754e7098898d1db7d4351b
15:18:39 Running command git checkout -b merge_ci --track origin/merge_ci
15:18:40 Switched to a new branch 'merge_ci'
15:18:40 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:18:40 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 82e3f13b20690df14f7d914b763499f1f2de98d9
15:18:40 Installing build dependencies: started
15:18:40 Installing build dependencies: finished with status 'done'
15:18:40 Getting requirements to build wheel: started
15:18:41 Getting requirements to build wheel: finished with status 'done'
15:18:41 Preparing metadata (pyproject.toml): started
15:18:41 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
15:18:41 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
15:18:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
15:18:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
15:18:41 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.0)
15:18:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
15:18:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
15:18:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
15:18:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
15:18:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
15:18:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
15:18:41 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.2)
15:18:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
15:18:41 Building wheels for collected packages: omero-cli-render
15:18:41 Building wheel for omero-cli-render (pyproject.toml): started
15:18:41 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
15:18:41 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=f0b012eb6022718393fcc500a814d8bd2e01526769cc381af02247d41298b52f
15:18:41 Stored in directory: /tmp/pip-ephem-wheel-cache-kz__z6s8/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
15:18:41 Successfully built omero-cli-render
15:18:41 Installing collected packages: omero-cli-render
15:18:41 Successfully installed omero-cli-render-0.8.2.dev0
15:18:41 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
15:18:42 Collecting omero-cli-duplicate
15:18:42 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-vc5jfg1l/omero-cli-duplicate_cd146c0d4c6a447e917c5a706f84f708
15:18:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-vc5jfg1l/omero-cli-duplicate_cd146c0d4c6a447e917c5a706f84f708
15:18:42 Running command git checkout -b merge_ci --track origin/merge_ci
15:18:43 Switched to a new branch 'merge_ci'
15:18:43 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:18:43 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 77819f22290cf329c7fa113f06e1f9650bfacd03
15:18:43 Installing build dependencies: started
15:18:44 Installing build dependencies: finished with status 'done'
15:18:44 Getting requirements to build wheel: started
15:18:44 Getting requirements to build wheel: finished with status 'done'
15:18:44 Preparing metadata (pyproject.toml): started
15:18:44 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:44 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
15:18:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
15:18:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
15:18:44 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.0)
15:18:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
15:18:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
15:18:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
15:18:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
15:18:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
15:18:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
15:18:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
15:18:44 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.2)
15:18:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
15:18:44 Building wheels for collected packages: omero-cli-duplicate
15:18:44 Building wheel for omero-cli-duplicate (pyproject.toml): started
15:18:45 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
15:18:45 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=bb676736a0452aa6fcc1a50f6a4058d7826cdd024baf3f1aeebc02cfee054dbf
15:18:45 Stored in directory: /tmp/pip-ephem-wheel-cache-kn_hidov/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
15:18:45 Successfully built omero-cli-duplicate
15:18:45 Installing collected packages: omero-cli-duplicate
15:18:45 Successfully installed omero-cli-duplicate-0.4.1.dev0
15:18:45 + pip install omero-certificates
15:18:45 Collecting omero-certificates
15:18:45 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
15:18:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
15:18:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
15:18:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
15:18:45 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.0)
15:18:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
15:18:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
15:18:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
15:18:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
15:18:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
15:18:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
15:18:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
15:18:45 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.2)
15:18:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
15:18:45 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
15:18:45 Installing collected packages: omero-certificates
15:18:45 Successfully installed omero-certificates-0.4.0
15:18:45 + for x in *.tar.gz
15:18:45 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
15:18:46 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
15:18:46 Installing build dependencies: started
15:18:46 Installing build dependencies: finished with status 'done'
15:18:46 Getting requirements to build wheel: started
15:18:47 Getting requirements to build wheel: finished with status 'done'
15:18:47 Preparing metadata (pyproject.toml): started
15:18:47 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:47 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
15:18:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
15:18:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
15:18:47 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0)
15:18:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
15:18:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
15:18:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
15:18:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
15:18:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
15:18:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
15:18:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
15:18:47 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
15:18:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
15:18:47 Building wheels for collected packages: omero-dropbox
15:18:47 Building wheel for omero-dropbox (pyproject.toml): started
15:18:47 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
15:18:47 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=e5b2ebda6845d24e3a86979013ff11bb7a39271f6f57a3b509f5e5dde58d1bd5
15:18:47 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
15:18:47 Successfully built omero-dropbox
15:18:47 Installing collected packages: omero-dropbox
15:18:47 Successfully installed omero-dropbox-5.7.1.dev0
15:18:47 + for x in *.tar.gz
15:18:47 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
15:18:48 Processing ./omero_marshal-0.9.2.dev0.tar.gz
15:18:48 Installing build dependencies: started
15:18:48 Installing build dependencies: finished with status 'done'
15:18:48 Getting requirements to build wheel: started
15:18:49 Getting requirements to build wheel: finished with status 'done'
15:18:49 Preparing metadata (pyproject.toml): started
15:18:49 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:49 Building wheels for collected packages: omero_marshal
15:18:49 Building wheel for omero_marshal (pyproject.toml): started
15:18:49 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
15:18:49 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=370a7f713128de003ee893c1e3a2d9479c712a9e306941317a32c599f850d84c
15:18:49 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
15:18:49 Successfully built omero_marshal
15:18:49 Installing collected packages: omero_marshal
15:18:49 Successfully installed omero_marshal-0.9.2.dev0
15:18:50 + for x in *.tar.gz
15:18:50 + pip install -U omero_py-5.22.0.dev0.tar.gz
15:18:50 Processing ./omero_py-5.22.0.dev0.tar.gz
15:18:50 Installing build dependencies: started
15:18:51 Installing build dependencies: finished with status 'done'
15:18:51 Getting requirements to build wheel: started
15:18:51 Getting requirements to build wheel: finished with status 'done'
15:18:51 Preparing metadata (pyproject.toml): started
15:18:52 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
15:18:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
15:18:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0)
15:18:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
15:18:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
15:18:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
15:18:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
15:18:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
15:18:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
15:18:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
15:18:52 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
15:18:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
15:18:52 Building wheels for collected packages: omero-py
15:18:52 Building wheel for omero-py (pyproject.toml): started
15:18:53 Building wheel for omero-py (pyproject.toml): finished with status 'done'
15:18:53 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=bc1467253c24db543cf30f8fc1ca1dd6b39e00e9b95e951a786a3a99f3d209d6
15:18:53 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
15:18:53 Successfully built omero-py
15:18:53 Installing collected packages: omero-py
15:18:53 Attempting uninstall: omero-py
15:18:53 Found existing installation: omero-py 5.21.3
15:18:53 Uninstalling omero-py-5.21.3:
15:18:53 Successfully uninstalled omero-py-5.21.3
15:18:55 Successfully installed omero-py-5.22.0.dev0
15:18:55 + for x in *.tar.gz
15:18:55 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
15:18:55 Processing ./omero_scripts-5.9.2.dev0.tar.gz
15:18:55 Installing build dependencies: started
15:18:56 Installing build dependencies: finished with status 'done'
15:18:56 Getting requirements to build wheel: started
15:18:56 Getting requirements to build wheel: finished with status 'done'
15:18:56 Preparing metadata (pyproject.toml): started
15:18:57 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:57 Building wheels for collected packages: omero-scripts
15:18:57 Building wheel for omero-scripts (pyproject.toml): started
15:18:57 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
15:18:57 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=d3f4c3449c3487c3e2d6184abba6494c0b5ff5a598814473a5fd6fc4be3f06b1
15:18:57 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
15:18:57 Successfully built omero-scripts
15:18:57 Installing collected packages: omero-scripts
15:18:57 Successfully installed omero-scripts-5.9.2.dev0
15:18:57 + for x in *.tar.gz
15:18:57 + pip install -U omero_web-5.30.2.dev0.tar.gz
15:18:57 Processing ./omero_web-5.30.2.dev0.tar.gz
15:18:58 Installing build dependencies: started
15:18:58 Installing build dependencies: finished with status 'done'
15:18:58 Getting requirements to build wheel: started
15:18:59 Getting requirements to build wheel: finished with status 'done'
15:18:59 Preparing metadata (pyproject.toml): started
15:18:59 Preparing metadata (pyproject.toml): finished with status 'done'
15:18:59 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
15:18:59 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
15:18:59 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
15:18:59 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
15:18:59 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
15:18:59 Collecting django-pipeline (from omero-web==5.30.2.dev0)
15:18:59 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
15:18:59 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
15:18:59 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
15:18:59 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
15:18:59 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
15:18:59 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
15:18:59 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
15:18:59 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
15:18:59 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
15:18:59 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (2025.2)
15:18:59 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
15:18:59 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (25.0)
15:18:59 Collecting importlib-resources (from omero-web==5.30.2.dev0)
15:18:59 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
15:19:00 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
15:19:00 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
15:19:00 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
15:19:00 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
15:19:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
15:19:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
15:19:00 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.0)
15:19:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
15:19:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
15:19:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
15:19:00 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
15:19:00 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
15:19:00 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
15:19:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
15:19:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
15:19:00 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.2)
15:19:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
15:19:00 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
15:19:00 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
15:19:00 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
15:19:00 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
15:19:00 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
15:19:00 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
15:19:00 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
15:19:00 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
15:19:00 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
15:19:00 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
15:19:00 Building wheels for collected packages: omero-web
15:19:00 Building wheel for omero-web (pyproject.toml): started
15:19:01 Building wheel for omero-web (pyproject.toml): finished with status 'done'
15:19:01 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819190 sha256=1d25a90e68c6d6494b072f275d30b2d434b4db9839a6e6bd165fbfd432e514c7
15:19:01 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
15:19:01 Successfully built omero-web
15:19:01 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
15:19:03
15:19:03 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.2.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
15:19:04 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
15:19:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
15:19:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
15:19:04 --2026-01-07 15:19:04-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
15:19:04 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ...
15:19:04 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
15:19:04 HTTP request sent, awaiting response... 200 OK
15:19:04 Length: 126476 (124K) [text/plain]
15:19:04 Saving to: ‘Figure_To_Pdf.py’
15:19:04
15:19:04 0K .......... .......... .......... .......... .......... 40% 4.05M 0s
15:19:04 50K .......... .......... .......... .......... .......... 80% 11.6M 0s
15:19:04 100K .......... .......... ... 100% 4.76M=0.02s
15:19:04
15:19:04 2026-01-07 15:19:04 (5.72 MB/s) - ‘Figure_To_Pdf.py’ saved [126476/126476]
15:19:04
15:19:04 + chmod 755 Figure_To_Pdf.py
15:19:04 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
15:19:04 + omero config set omero.db.name OMERO-server
15:19:05 + omero config set omero.db.host pg
15:19:06 + omero config set omero.db.user postgres
15:19:07 + omero config set omero.data.dir /home/omero/omero-server-data
15:19:09 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
15:19:10 + omero config set omero.db.poolsize 25
15:19:11 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
15:19:12 + omero config set omero.security.trustStorePassword changeit
15:19:13 + omero config set omero.mail.config true
15:19:14 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
15:19:15 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
15:19:16 + omero certificates
15:19:17 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
15:19:17 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
15:19:18 + '[' false = true ']'
15:19:18 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
15:19:18 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
15:19:18 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
15:19:18 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbcommand => upgrade
15:19:18 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbhost => localhost
15:19:18 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbname => OMERO-server
15:19:18 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbpass => omero
15:19:18 2026-01-07 15:19:18,248 [ omego.db] DEBUG dbuser => omero
15:19:18 2026-01-07 15:19:18,248 [ omego.db] DEBUG rootpass => omero
15:19:18 2026-01-07 15:19:18,248 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
15:19:18 2026-01-07 15:19:18,248 [omego.extern] INFO Executing : omero version
15:19:19 OMERO.py version:
15:19:19 OMERO.server version:
15:19:19 5.6.3-578-b8f107afdf-ice36-b11
15:19:19 5.22.0.dev0
15:19:19 2026-01-07 15:19:19,428 [omego.extern] INFO Completed [1.181 s]
15:19:19 2026-01-07 15:19:19,429 [omego.extern] DEBUG Using omero CLI from omero
15:19:19 2026-01-07 15:19:19,429 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
15:19:19 2026-01-07 15:19:19,429 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:19:19 2026-01-07 15:19:19,429 [omego.extern] INFO Executing : omero config get --show-password
15:19:20 2026-01-07 15:19:20,556 [omego.extern] INFO Completed [1.127 s]
15:19:20 2026-01-07 15:19:20,556 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:19:20 2026-01-07 15:19:20,556 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
15:19:20 2026-01-07 15:19:20,561 [omego.extern] INFO Completed [0.005 s]
15:19:20 2026-01-07 15:19:20,561 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
15:19:20 2026-01-07 15:19:20,561 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
15:19:20
15:19:20 2026-01-07 15:19:20,561 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:19:20 2026-01-07 15:19:20,562 [omego.extern] INFO Executing : omero config get --show-password
15:19:21 2026-01-07 15:19:21,685 [omego.extern] INFO Completed [1.123 s]
15:19:21 2026-01-07 15:19:21,685 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:19:21 2026-01-07 15:19:21,685 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
15:19:21 2026-01-07 15:19:21,695 [omego.extern] INFO Completed [0.009 s]
15:19:21 2026-01-07 15:19:21,695 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
15:19:21 2026-01-07 15:19:21,695 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
15:19:21 2026-01-07 15:19:21,695 [omego.extern] INFO Running [current environment]: omero config get --show-password
15:19:21 2026-01-07 15:19:21,695 [omego.extern] INFO Executing : omero config get --show-password
15:19:22 2026-01-07 15:19:22,865 [omego.extern] INFO Completed [1.170 s]
15:19:22 2026-01-07 15:19:22,865 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
15:19:22 2026-01-07 15:19:22,865 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
15:19:22 2026-01-07 15:19:22,875 [omego.extern] INFO Completed [0.010 s]
15:19:22 2026-01-07 15:19:22,875 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
15:19:22 2026-01-07 15:19:22,875 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
15:19:22 2026-01-07 15:19:22,877 [ omego.db] INFO Database is already at OMERO5.4__0
15:19:22 + export LANG=en_US.UTF-8
15:19:22 + LANG=en_US.UTF-8
15:19:22 + export LANGUAGE=en_US:en
15:19:22 + LANGUAGE=en_US:en
15:19:22 + export LC_ALL=en_US.UTF-8
15:19:22 + LC_ALL=en_US.UTF-8
15:19:22 + BUILD_ID=DONT_KILL_ME
15:19:22 + omero admin start
15:19:27 WARNING: lock files in /home/omero/omero-server-data
15:19:27 ----------------------------------------
15:19:27 /home/omero/omero-server-data/.omero/repository/a37b7afc-9946-4a12-8a83-a98dc63b1e3c/.lock
15:19:27 ----------------------------------------
15:19:27
15:19:27 You may want to stop all server processes and remove
15:19:27 these files manually. Lock files can remain after an
15:19:27 abrupt server outage and are especially frequent on
15:19:27 remotely mounted filesystems like NFS.
15:19:27
15:19:27 No descriptor given. Using etc/grid/default.xml
15:19:35 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
15:19:35 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
15:19:35 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
15:19:35 Waiting on startup. Use CTRL-C to exit
15:19:35 + omero admin waitup
15:19:36 Waiting on startup. Use CTRL-C to exit
15:19:36 + omero admin diagnostics
15:19:37
15:19:37 ================================================================================
15:19:37 OMERO Diagnostics (admin)
15:19:37 ================================================================================
15:19:37
15:19:37 Commands: java -version 17.0.17 (/usr/bin/java)
15:19:38 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
15:19:38 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
15:19:38 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
15:19:38 Commands: psql --version 16.11 (/usr/bin/psql)
15:19:38 Commands: openssl version 3.5.11 (/usr/bin/openssl)
15:19:38
15:19:38 Component: OMERO.py 5.22.0.dev0
15:19:38 Component: OMERO.server 5.6.3-578-b8f107afdf-ice36-b11
15:19:38
15:19:38 Server: icegridnode running
15:19:38 Server: Blitz-0 active (pid = 2159, enabled)
15:19:38 Server: Indexer-0 activating (enabled)
15:19:38 Server: OMERO.Glacier2 active (pid = 2191, enabled)
15:19:38 Server: OMERO.IceStorm active (pid = 2226, enabled)
15:19:38 Server: Processor-0 activating (enabled)
15:19:38 Server: Tables-0 activating (enabled)
15:19:38
15:19:38 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
15:19:38 Log files: Blitz-0.log 23.7 KB errors=0 warnings=1
15:19:38 Log files: DropBox.log n/a
15:19:38 Log files: FileServer.log n/a
15:19:38 Log files: Indexer-0.log 114 B
15:19:38 Log files: MonitorServer.log n/a
15:19:38 Log files: Processor-0.log 281 B
15:19:38 Log files: Tables-0.log 281 B
15:19:38 Log files: TestDropBox.log n/a
15:19:38 Log files: master.err empty
15:19:38 Log files: master.out 30.5 KB
15:19:38 Log files: Total size 0.05 MB
15:19:38
15:19:38
15:19:38 Environment:OMERO_HOME=(unset)
15:19:38 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
15:19:38 Environment:OMERO_NODE=(unset)
15:19:38 Environment:OMERO_MASTER=(unset)
15:19:38 Environment:OMERO_USERDIR=(unset)
15:19:38 Environment:OMERO_TMPDIR=(unset)
15:19:38 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:19:38 Environment:PYTHONPATH=(unset)
15:19:38 Environment:ICE_HOME=/opt/ice-3.6.5
15:19:38 Environment:LD_LIBRARY_PATH=(unset)
15:19:38 Environment:DYLD_LIBRARY_PATH=(unset)
15:19:38
15:19:38 OMERO SSL port:4064
15:19:38 OMERO TCP port:4063
15:19:38 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
15:19:38 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
15:19:38
15:19:38 JVM settings: Blitz-${index} -Xmx7200m
15:19:38 JVM settings: Indexer-${index} -Xmx4800m
15:19:38 JVM settings: PixelData-${index} -Xmx7200m
15:19:38 JVM settings: Repository-${index} -Xmx4800m
15:19:38
15:19:38 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 7 January 2026 4666636f36140f1c1350857d10c73653acd247c0
15:19:38 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 7 January 2026 4666636f36140f1c1350857d10c73653acd247c0
15:19:38 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 7 January 2026 4666636f36140f1c1350857d10c73653acd247c0
15:19:38 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130
15:19:38 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130
15:19:38 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130
15:19:38 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130
15:19:38 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130
15:19:38 Jar: lib/server/ome-xml.jar OME XML library 6.5.3-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130
15:19:38 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
15:19:38 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
15:19:38 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
15:19:38 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
15:19:38 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
15:19:38 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
15:19:38 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
15:19:38 + deactivate
15:19:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:19:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:19:38 + export PATH
15:19:38 + unset _OLD_VIRTUAL_PATH
15:19:38 + '[' -n '' ']'
15:19:38 + hash -r
15:19:38 + '[' -n '' ']'
15:19:38 + unset VIRTUAL_ENV
15:19:38 + unset VIRTUAL_ENV_PROMPT
15:19:38 + '[' '!' '' = nondestructive ']'
15:19:38 + unset -f deactivate
15:19:38 Finished: SUCCESS
