00:45:27 Started by upstream project "Trigger" build number 31
00:45:27 originally caused by:
00:45:27 Started by timer
00:45:27 Running as SYSTEM
00:45:27 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:27 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8945507365255967364.sh
00:45:27 + source /home/settings.env
00:45:27 ++ OMERO_DB_HOST=pg
00:45:27 ++ OMERO_DB_USER=postgres
00:45:27 ++ OMERO_DB_PASS=
00:45:27 ++ OMERO_ROOT_PASS=omero
00:45:27 ++ OMERO_DATA_DIR=/OMERO
00:45:27 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:27 + OMERO_DB_NAME=OMERO-server
00:45:27 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:27 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:27 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:27 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:27 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:27 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:27 ++ deactivate nondestructive
00:45:27 ++ '[' -n '' ']'
00:45:27 ++ '[' -n '' ']'
00:45:27 ++ hash -r
00:45:27 ++ '[' -n '' ']'
00:45:27 ++ unset VIRTUAL_ENV
00:45:27 ++ unset VIRTUAL_ENV_PROMPT
00:45:27 ++ '[' '!' nondestructive = nondestructive ']'
00:45:27 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:27 ++ export VIRTUAL_ENV
00:45:27 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:27 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:27 ++ export PATH
00:45:27 ++ '[' -n '' ']'
00:45:27 ++ '[' -z '' ']'
00:45:27 ++ _OLD_VIRTUAL_PS1=
00:45:27 ++ PS1='(.venv3) '
00:45:27 ++ export PS1
00:45:27 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:27 ++ export VIRTUAL_ENV_PROMPT
00:45:27 ++ hash -r
00:45:27 + omero admin stop
00:45:28 Server not running
00:45:28 + echo not running
00:45:28 not running
00:45:28 + sleep 5
00:45:33 + deactivate
00:45:33 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:33 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:33 + export PATH
00:45:33 + unset _OLD_VIRTUAL_PATH
00:45:33 + '[' -n '' ']'
00:45:33 + hash -r
00:45:33 + '[' -n '' ']'
00:45:33 + unset VIRTUAL_ENV
00:45:33 + unset VIRTUAL_ENV_PROMPT
00:45:33 + '[' '!' '' = nondestructive ']'
00:45:33 + unset -f deactivate
00:45:33 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:34 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:37 + '[' false = true ']'
00:45:37 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:37 Skipping PURGE_DATA:CleanDbAndRepo
00:45:37 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:40 Copied 1 artifact from "OMERO-build" build number 12
00:45:40 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 12
00:45:40 Copied 2 artifacts from "OMERO-build-build" build number 15
00:45:40 [OMERO-server] $ /bin/bash -xe /tmp/jenkins619957627092603863.sh
00:45:40 + source /home/settings.env
00:45:40 ++ OMERO_DB_HOST=pg
00:45:40 ++ OMERO_DB_USER=postgres
00:45:40 ++ OMERO_DB_PASS=
00:45:40 ++ OMERO_ROOT_PASS=omero
00:45:40 ++ OMERO_DATA_DIR=/OMERO
00:45:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:40 + OMERO_DB_NAME=OMERO-server
00:45:40 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:40 + mkdir -p /home/omero/omero-server-data
00:45:40 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:40 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:40 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:40 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:40 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:40 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:40 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:40 ++ ls OMERO.server-5.6.3-578-99f4f59171-ice36-b12.zip
00:45:40 + ZIP=OMERO.server-5.6.3-578-99f4f59171-ice36-b12.zip
00:45:40 + '[' '!' -z '' ']'
00:45:40 + DIST=OMERO.server-5.6.3-578-99f4f59171-ice36-b12
00:45:40 + unzip OMERO.server-5.6.3-578-99f4f59171-ice36-b12.zip
00:45:40 Archive: OMERO.server-5.6.3-578-99f4f59171-ice36-b12.zip
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/blitz/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/grid/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/profiles/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/error/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/grid/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/luts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/luts/janelia/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/luts/matplotlib/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/luts/ncsa_paledit/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/luts/seaborn/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/luts/wcif/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/omero/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/omero/analysis_scripts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/omero/annotation_scripts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/omero/export_scripts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/omero/figure_scripts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/omero/import_scripts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/scripts/omero/util_scripts/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/server/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/share/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/share/licenses/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/misc/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__1/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__10/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__11/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__2/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__3/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__4/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__5/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__6/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__7/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__8/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3A__9/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3__4/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3__5/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3__6/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO3__7/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO4.1__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO4.2__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO4.2__0/t/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO4.3__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO4.4__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO4__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.0__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.1__1/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.2__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.3__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4DEV__1/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4DEV__2/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4DEV__3/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/var/
00:45:40 creating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/var/tmp/
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/LICENSE.txt
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/backup.cfg
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/blitz/mail-senders.example
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/blitz/mail-server.example
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/build.properties
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/env.bat
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/env.sh
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/hibernate.properties
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/ice.config
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/logback-cli.xml
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/logback-indexing-cli.xml
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/logback-indexing.xml
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/logback.xml
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/mime.types
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/node1.cfg
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/node2.cfg
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/omero.properties
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/profiles/psql
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/rollover.cfg
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/Windows.cfg
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/error/maintainance.html
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/grid/README
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/grid/default.xml
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/grid/templates.xml
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/grid/windefault.xml
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/ice.config
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/internal.cfg
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/master.cfg
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/templates/robot.template
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/etc/testdropbox.config
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/history.rst
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/OMEZarrReader.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/accessors-smart.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/activation.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/aggdesigner-algorithm.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/aircompressor.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/antlr.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/aopalliance.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/apiguardian-api.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/asm.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/avatica-core.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/avatica-metrics.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/aws-java-sdk-core.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/aws-java-sdk-kms.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/aws-java-sdk-s3.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/base.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-anim.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-awt-util.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-bridge.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-codec.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-constants.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-css.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-dom.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-ext.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-gvt.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-i18n.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-parser.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-script.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-shared-resources.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-svg-dom.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-svggen.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-transcoder.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-util.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/batik-xml.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/btm.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/calcite-core.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/calcite-linq4j.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/cdm-core.jar
00:45:40 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/lib/client/checker-qual.jar
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00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/psql-header.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/schema.sql
00:45:42 inflating: OMERO.server-5.6.3-578-99f4f59171-ice36-b12/sql/psql/OMERO5.4__0/views.sql
00:45:42 + rm -f OMERO.server-5.6.3-578-99f4f59171-ice36-b12.zip
00:45:42 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-578-99f4f59171-ice36-b12 /home/omero/workspace/OMERO-server/OMERO.server
00:45:42 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:42 ++ deactivate nondestructive
00:45:42 ++ '[' -n '' ']'
00:45:42 ++ '[' -n '' ']'
00:45:42 ++ hash -r
00:45:42 ++ '[' -n '' ']'
00:45:42 ++ unset VIRTUAL_ENV
00:45:42 ++ unset VIRTUAL_ENV_PROMPT
00:45:42 ++ '[' '!' nondestructive = nondestructive ']'
00:45:42 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:42 ++ export VIRTUAL_ENV
00:45:42 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:42 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:42 ++ export PATH
00:45:42 ++ '[' -n '' ']'
00:45:42 ++ '[' -z '' ']'
00:45:42 ++ _OLD_VIRTUAL_PS1=
00:45:42 ++ PS1='(.venv3) '
00:45:42 ++ export PS1
00:45:42 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:42 ++ export VIRTUAL_ENV_PROMPT
00:45:42 ++ hash -r
00:45:42 + pip install -U pip
00:45:43 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:43 Collecting pip
00:45:43 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
00:45:43 Installing collected packages: pip
00:45:43 Attempting uninstall: pip
00:45:43 Found existing installation: pip 22.3.1
00:45:43 Uninstalling pip-22.3.1:
00:45:43 Successfully uninstalled pip-22.3.1
00:45:44 Successfully installed pip-25.3
00:45:44 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:44 Collecting zeroc-ice==3.6.5
00:45:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:46 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 22.9 MB/s 0:00:01
00:45:46 Installing collected packages: zeroc-ice
00:45:47 Successfully installed zeroc-ice-3.6.5
00:45:47 + pip install markdown
00:45:48 Collecting markdown
00:45:48 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
00:45:48 Using cached markdown-3.10-py3-none-any.whl (107 kB)
00:45:48 Installing collected packages: markdown
00:45:48 Successfully installed markdown-3.10
00:45:48 + pip install reportlab
00:45:48 Collecting reportlab
00:45:48 Using cached reportlab-4.4.7-py3-none-any.whl.metadata (1.7 kB)
00:45:48 Collecting pillow>=9.0.0 (from reportlab)
00:45:48 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:48 Collecting charset-normalizer (from reportlab)
00:45:48 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:49 Using cached reportlab-4.4.7-py3-none-any.whl (2.0 MB)
00:45:49 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:49 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:49 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:49
00:45:49 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.7
00:45:50 + pip install omego
00:45:50 Collecting omego
00:45:50 Using cached omego-0.7.0-py3-none-any.whl
00:45:50 Collecting future (from omego)
00:45:50 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:50 Collecting yaclifw>=0.1.1 (from omego)
00:45:50 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:50 Collecting six (from yaclifw>=0.1.1->omego)
00:45:50 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:50 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:50 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:50 Installing collected packages: six, future, yaclifw, omego
00:45:50
00:45:50 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:45:50 + pip install tables
00:45:51 Collecting tables
00:45:51 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:45:51 Collecting numpy>=1.20.0 (from tables)
00:45:51 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:45:51 Collecting numexpr>=2.6.2 (from tables)
00:45:51 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:51 Collecting packaging (from tables)
00:45:51 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
00:45:51 Collecting py-cpuinfo (from tables)
00:45:51 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:51 Collecting blosc2>=2.3.0 (from tables)
00:45:51 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
00:45:51 Collecting typing-extensions>=4.4.0 (from tables)
00:45:51 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:45:51 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:51 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:52 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:52 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:52 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:45:52 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
00:45:52 Collecting requests (from blosc2>=2.3.0->tables)
00:45:52 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:52 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:52 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:52 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:52 Downloading urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:45:52 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:52 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:45:52 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:45:52 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
00:45:52 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:52 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB)
00:45:52 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:45:52 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:52 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:52 Using cached packaging-25.0-py3-none-any.whl (66 kB)
00:45:52 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
00:45:52 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:52 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:52 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:52 Downloading urllib3-2.6.3-py3-none-any.whl (131 kB)
00:45:52 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:45:52 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:45:55
00:45:55 Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.0 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:45:56 + pip install jinja2
00:45:56 Collecting jinja2
00:45:56 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:45:56 Collecting MarkupSafe>=2.0 (from jinja2)
00:45:56 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:45:56 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:45:56 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:45:56 Installing collected packages: MarkupSafe, jinja2
00:45:56
00:45:56 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:45:56 + pip install omero-py
00:45:57 Collecting omero-py
00:45:57 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:45:57 Collecting appdirs (from omero-py)
00:45:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:45:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:45:57 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.0)
00:45:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:45:57 Collecting PyYAML (from omero-py)
00:45:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:45:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:45:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:45:57 Collecting portalocker (from omero-py)
00:45:57 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:45:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:45:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:45:57 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:45:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:45:57 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:45:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:45:57 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:45:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:45:57 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:45:59
00:45:59 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:45:59 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:45:59 Collecting omero-metadata
00:45:59 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-6dsqrx8v/omero-metadata_991e24763536494f9d34a694df147e4a
00:45:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-6dsqrx8v/omero-metadata_991e24763536494f9d34a694df147e4a
00:46:00 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a2db1a8ae64b1c2a294f7491ff5e3a5b03fd1f17
00:46:00 Installing build dependencies: started
00:46:01 Installing build dependencies: finished with status 'done'
00:46:01 Getting requirements to build wheel: started
00:46:01 Getting requirements to build wheel: finished with status 'done'
00:46:01 Preparing metadata (pyproject.toml): started
00:46:01 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:01 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:46:01 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:46:01 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:46:01 Collecting pandas (from omero-metadata)
00:46:01 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
00:46:01 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:01 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:01 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.0)
00:46:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:46:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:01 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:46:01 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:46:01 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:46:01 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:01 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:01 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:46:01 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:01 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:46:01 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
00:46:01 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:46:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:46:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:46:01 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:46:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:46:01 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
00:46:01 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:01 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:01 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB)
00:46:02 Building wheels for collected packages: omero-metadata
00:46:02 Building wheel for omero-metadata (pyproject.toml): started
00:46:02 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:02 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=2e109f8ac2d2f0c92827344993eb39e17a20ad555516fe5f0bd1c4e1fdf57eb5
00:46:02 Stored in directory: /tmp/pip-ephem-wheel-cache-2l0l0wco/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:46:02 Successfully built omero-metadata
00:46:02 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:46:07
00:46:07 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
00:46:07 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:07 Collecting omero-cli-render
00:46:07 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-3zzu1gy4/omero-cli-render_c23c27a7d42149c7b67f41f969431882
00:46:07 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-3zzu1gy4/omero-cli-render_c23c27a7d42149c7b67f41f969431882
00:46:08 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:08 Switched to a new branch 'merge_ci'
00:46:08 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:08 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit e1203c11630183081aaa54d9b07931c97d381de6
00:46:08 Installing build dependencies: started
00:46:09 Installing build dependencies: finished with status 'done'
00:46:09 Getting requirements to build wheel: started
00:46:09 Getting requirements to build wheel: finished with status 'done'
00:46:09 Preparing metadata (pyproject.toml): started
00:46:09 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:46:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:09 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.0)
00:46:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:46:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:46:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:46:09 Building wheels for collected packages: omero-cli-render
00:46:09 Building wheel for omero-cli-render (pyproject.toml): started
00:46:10 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:10 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=fab9a36b3c4803f68228f369c7e1c321559cbd9a24fc69129db67a42eab6c9c7
00:46:10 Stored in directory: /tmp/pip-ephem-wheel-cache-v91v8469/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:10 Successfully built omero-cli-render
00:46:10 Installing collected packages: omero-cli-render
00:46:10 Successfully installed omero-cli-render-0.8.2.dev0
00:46:10 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:10 Collecting omero-cli-duplicate
00:46:10 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-_8x53mkw/omero-cli-duplicate_806b9aa4989a406db08a20fbf18f9ff5
00:46:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-_8x53mkw/omero-cli-duplicate_806b9aa4989a406db08a20fbf18f9ff5
00:46:11 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:11 Switched to a new branch 'merge_ci'
00:46:11 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:11 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 0b74f72c50d522d223246a048ddccb060653b572
00:46:11 Installing build dependencies: started
00:46:12 Installing build dependencies: finished with status 'done'
00:46:12 Getting requirements to build wheel: started
00:46:12 Getting requirements to build wheel: finished with status 'done'
00:46:12 Preparing metadata (pyproject.toml): started
00:46:12 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:12 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:46:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:12 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.0)
00:46:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:46:12 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:12 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:46:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:46:12 Building wheels for collected packages: omero-cli-duplicate
00:46:12 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:13 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:13 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=f86625222d2d85d962bc8e952b279acdbdbb836a766b0aad9efc25734c23385a
00:46:13 Stored in directory: /tmp/pip-ephem-wheel-cache-le8m_r7x/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:13 Successfully built omero-cli-duplicate
00:46:13 Installing collected packages: omero-cli-duplicate
00:46:13 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:13 + pip install omero-certificates
00:46:13 Collecting omero-certificates
00:46:13 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:46:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:13 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.0)
00:46:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:46:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:13 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:46:13 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:13 Installing collected packages: omero-certificates
00:46:13 Successfully installed omero-certificates-0.4.0
00:46:13 + for x in *.tar.gz
00:46:13 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:14 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:14 Installing build dependencies: started
00:46:14 Installing build dependencies: finished with status 'done'
00:46:14 Getting requirements to build wheel: started
00:46:15 Getting requirements to build wheel: finished with status 'done'
00:46:15 Preparing metadata (pyproject.toml): started
00:46:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:15 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:46:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:15 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0)
00:46:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:46:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:15 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:46:15 Building wheels for collected packages: omero-dropbox
00:46:15 Building wheel for omero-dropbox (pyproject.toml): started
00:46:15 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:15 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=c741bb276fcdaa4d17676eeed1f8a14f879fd47bf5bfe6ea9559fe8253f61a60
00:46:15 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:15 Successfully built omero-dropbox
00:46:15 Installing collected packages: omero-dropbox
00:46:15 Successfully installed omero-dropbox-5.7.1.dev0
00:46:15 + for x in *.tar.gz
00:46:15 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:16 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:16 Installing build dependencies: started
00:46:17 Installing build dependencies: finished with status 'done'
00:46:17 Getting requirements to build wheel: started
00:46:17 Getting requirements to build wheel: finished with status 'done'
00:46:17 Preparing metadata (pyproject.toml): started
00:46:18 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:18 Building wheels for collected packages: omero_marshal
00:46:18 Building wheel for omero_marshal (pyproject.toml): started
00:46:18 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:18 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=e74be5a5723d2cd3f340c96980e91cf4959e673b5258e4e6881216947e703f6c
00:46:18 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:18 Successfully built omero_marshal
00:46:18 Installing collected packages: omero_marshal
00:46:18 Successfully installed omero_marshal-0.9.2.dev0
00:46:18 + for x in *.tar.gz
00:46:18 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:46:18 Processing ./omero_py-5.22.0.dev0.tar.gz
00:46:19 Installing build dependencies: started
00:46:19 Installing build dependencies: finished with status 'done'
00:46:19 Getting requirements to build wheel: started
00:46:20 Getting requirements to build wheel: finished with status 'done'
00:46:20 Preparing metadata (pyproject.toml): started
00:46:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:46:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:46:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0)
00:46:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:46:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:46:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:46:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:46:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:46:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:46:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:46:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
00:46:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:46:20 Building wheels for collected packages: omero-py
00:46:20 Building wheel for omero-py (pyproject.toml): started
00:46:21 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:21 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=ac7134298e672fd67cf34e9d7e2e1e44c6796735a6d0e21f5fbce627e86a8507
00:46:21 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:46:21 Successfully built omero-py
00:46:21 Installing collected packages: omero-py
00:46:21 Attempting uninstall: omero-py
00:46:21 Found existing installation: omero-py 5.21.3
00:46:21 Uninstalling omero-py-5.21.3:
00:46:22 Successfully uninstalled omero-py-5.21.3
00:46:23 Successfully installed omero-py-5.22.0.dev0
00:46:23 + for x in *.tar.gz
00:46:23 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
00:46:24 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:46:24 Installing build dependencies: started
00:46:25 Installing build dependencies: finished with status 'done'
00:46:25 Getting requirements to build wheel: started
00:46:25 Getting requirements to build wheel: finished with status 'done'
00:46:25 Preparing metadata (pyproject.toml): started
00:46:25 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:25 Building wheels for collected packages: omero-scripts
00:46:25 Building wheel for omero-scripts (pyproject.toml): started
00:46:25 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:25 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=f5b3858d1756f5a18fed177d4685e331b09946ace47ee463019713a21a00ed40
00:46:25 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
00:46:25 Successfully built omero-scripts
00:46:25 Installing collected packages: omero-scripts
00:46:26 Successfully installed omero-scripts-5.9.2.dev0
00:46:26 + for x in *.tar.gz
00:46:26 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:46:26 Processing ./omero_web-5.30.2.dev0.tar.gz
00:46:26 Installing build dependencies: started
00:46:27 Installing build dependencies: finished with status 'done'
00:46:27 Getting requirements to build wheel: started
00:46:27 Getting requirements to build wheel: finished with status 'done'
00:46:27 Preparing metadata (pyproject.toml): started
00:46:28 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:28 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
00:46:28 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:46:28 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:46:28 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:46:28 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
00:46:28 Collecting django-pipeline (from omero-web==5.30.2.dev0)
00:46:28 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:28 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:46:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:28 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:46:28 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:46:28 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:46:28 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:46:28 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:46:28 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:46:28 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (2025.2)
00:46:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:46:28 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (25.0)
00:46:28 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:46:28 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:28 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:46:28 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:46:28 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:46:28 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:46:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:46:28 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.0)
00:46:28 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:46:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:46:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:46:28 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
00:46:28 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
00:46:28 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:46:28 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:46:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:46:28 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:46:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:46:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:28 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
00:46:28 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:46:28 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:46:28 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:46:28 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:28 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:46:28 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:28 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:28 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:46:28 Building wheels for collected packages: omero-web
00:46:28 Building wheel for omero-web (pyproject.toml): started
00:46:29 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:29 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819190 sha256=8894ee2ddcabe692b306dbcd226b309bfe9d964f2a1307a603b5a3137f94ba44
00:46:29 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:46:29 Successfully built omero-web
00:46:30 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:32
00:46:32 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.2.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
00:46:33 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:33 --2026-01-08 00:46:33-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:33 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ...
00:46:33 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:46:33 HTTP request sent, awaiting response... 200 OK
00:46:33 Length: 126476 (124K) [text/plain]
00:46:33 Saving to: ‘Figure_To_Pdf.py’
00:46:33
00:46:33 0K .......... .......... .......... .......... .......... 40% 3.86M 0s
00:46:33 50K .......... .......... .......... .......... .......... 80% 14.2M 0s
00:46:33 100K .......... .......... ... 100% 4.56M=0.02s
00:46:33
00:46:33 2026-01-08 00:46:33 (5.71 MB/s) - ‘Figure_To_Pdf.py’ saved [126476/126476]
00:46:33
00:46:33 + chmod 755 Figure_To_Pdf.py
00:46:33 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:33 + omero config set omero.db.name OMERO-server
00:46:34 + omero config set omero.db.host pg
00:46:35 + omero config set omero.db.user postgres
00:46:36 + omero config set omero.data.dir /home/omero/omero-server-data
00:46:38 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:46:39 + omero config set omero.db.poolsize 25
00:46:40 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:46:41 + omero config set omero.security.trustStorePassword changeit
00:46:42 + omero config set omero.mail.config true
00:46:43 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:46:45 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:46:46 + omero certificates
00:46:47 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:46:47 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:46:47 + '[' false = true ']'
00:46:47 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:46:47 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:46:47 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:46:47 2026-01-08 00:46:47,627 [ omego.db] DEBUG dbcommand => upgrade
00:46:47 2026-01-08 00:46:47,627 [ omego.db] DEBUG dbhost => localhost
00:46:47 2026-01-08 00:46:47,627 [ omego.db] DEBUG dbname => OMERO-server
00:46:47 2026-01-08 00:46:47,627 [ omego.db] DEBUG dbpass => omero
00:46:47 2026-01-08 00:46:47,628 [ omego.db] DEBUG dbuser => omero
00:46:47 2026-01-08 00:46:47,628 [ omego.db] DEBUG rootpass => omero
00:46:47 2026-01-08 00:46:47,628 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:46:47 2026-01-08 00:46:47,628 [omego.extern] INFO Executing : omero version
00:46:48 OMERO.py version:
00:46:48 OMERO.server version:
00:46:48 5.6.3-578-99f4f59171-ice36-b12
00:46:48 5.22.0.dev0
00:46:48 2026-01-08 00:46:48,851 [omego.extern] INFO Completed [1.223 s]
00:46:48 2026-01-08 00:46:48,851 [omego.extern] DEBUG Using omero CLI from omero
00:46:48 2026-01-08 00:46:48,851 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:46:48 2026-01-08 00:46:48,851 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:48 2026-01-08 00:46:48,851 [omego.extern] INFO Executing : omero config get --show-password
00:46:50 2026-01-08 00:46:50,019 [omego.extern] INFO Completed [1.168 s]
00:46:50 2026-01-08 00:46:50,019 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:50 2026-01-08 00:46:50,019 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:46:50 2026-01-08 00:46:50,025 [omego.extern] INFO Completed [0.006 s]
00:46:50 2026-01-08 00:46:50,025 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:46:50 2026-01-08 00:46:50,025 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:46:50
00:46:50 2026-01-08 00:46:50,025 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:50 2026-01-08 00:46:50,025 [omego.extern] INFO Executing : omero config get --show-password
00:46:51 2026-01-08 00:46:51,165 [omego.extern] INFO Completed [1.139 s]
00:46:51 2026-01-08 00:46:51,165 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:51 2026-01-08 00:46:51,165 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:46:51 2026-01-08 00:46:51,174 [omego.extern] INFO Completed [0.009 s]
00:46:51 2026-01-08 00:46:51,175 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.11") at port "5432".\n'
00:46:51 2026-01-08 00:46:51,175 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:46:51 2026-01-08 00:46:51,175 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:51 2026-01-08 00:46:51,175 [omego.extern] INFO Executing : omero config get --show-password
00:46:52 2026-01-08 00:46:52,362 [omego.extern] INFO Completed [1.187 s]
00:46:52 2026-01-08 00:46:52,362 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:52 2026-01-08 00:46:52,362 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:46:52 2026-01-08 00:46:52,373 [omego.extern] INFO Completed [0.011 s]
00:46:52 2026-01-08 00:46:52,373 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:46:52 2026-01-08 00:46:52,373 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:46:52 2026-01-08 00:46:52,375 [ omego.db] INFO Database is already at OMERO5.4__0
00:46:52 + export LANG=en_US.UTF-8
00:46:52 + LANG=en_US.UTF-8
00:46:52 + export LANGUAGE=en_US:en
00:46:52 + LANGUAGE=en_US:en
00:46:52 + export LC_ALL=en_US.UTF-8
00:46:52 + LC_ALL=en_US.UTF-8
00:46:52 + BUILD_ID=DONT_KILL_ME
00:46:52 + omero admin start
00:46:56 WARNING: lock files in /home/omero/omero-server-data
00:46:56 ----------------------------------------
00:46:56 /home/omero/omero-server-data/.omero/repository/a37b7afc-9946-4a12-8a83-a98dc63b1e3c/.lock
00:46:56 ----------------------------------------
00:46:56
00:46:56 You may want to stop all server processes and remove
00:46:56 these files manually. Lock files can remain after an
00:46:56 abrupt server outage and are especially frequent on
00:46:56 remotely mounted filesystems like NFS.
00:46:56
00:46:56 No descriptor given. Using etc/grid/default.xml
00:47:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:04 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:04 Waiting on startup. Use CTRL-C to exit
00:47:04 + omero admin waitup
00:47:05 Waiting on startup. Use CTRL-C to exit
00:47:05 + omero admin diagnostics
00:47:07
00:47:07 ================================================================================
00:47:07 OMERO Diagnostics (admin)
00:47:07 ================================================================================
00:47:07
00:47:07 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:07 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:07 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:07 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:07 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:07 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:07
00:47:07 Component: OMERO.py 5.22.0.dev0
00:47:07 Component: OMERO.server 5.6.3-578-99f4f59171-ice36-b12
00:47:07
00:47:07 Server: icegridnode running
00:47:07 Server: Blitz-0 active (pid = 2237, enabled)
00:47:07 Server: Indexer-0 activating (enabled)
00:47:07 Server: OMERO.Glacier2 active (pid = 2270, enabled)
00:47:07 Server: OMERO.IceStorm active (pid = 2299, enabled)
00:47:07 Server: Processor-0 activating (enabled)
00:47:07 Server: Tables-0 activating (enabled)
00:47:07
00:47:07 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:07 Log files: Blitz-0.log 24.2 KB errors=0 warnings=1
00:47:07 Log files: DropBox.log n/a
00:47:07 Log files: FileServer.log n/a
00:47:07 Log files: Indexer-0.log 114 B
00:47:07 Log files: MonitorServer.log n/a
00:47:07 Log files: Processor-0.log 471 B
00:47:07 Log files: Tables-0.log 281 B
00:47:07 Log files: TestDropBox.log n/a
00:47:07 Log files: master.err empty
00:47:07 Log files: master.out 30.5 KB
00:47:07 Log files: Total size 0.06 MB
00:47:07
00:47:07
00:47:07 Environment:OMERO_HOME=(unset)
00:47:07 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:07 Environment:OMERO_NODE=(unset)
00:47:07 Environment:OMERO_MASTER=(unset)
00:47:07 Environment:OMERO_USERDIR=(unset)
00:47:07 Environment:OMERO_TMPDIR=(unset)
00:47:07 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:07 Environment:PYTHONPATH=(unset)
00:47:07 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:07 Environment:LD_LIBRARY_PATH=(unset)
00:47:07 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:07
00:47:07 OMERO SSL port:4064
00:47:07 OMERO TCP port:4063
00:47:07 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:07 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:07
00:47:07 JVM settings: Blitz-${index} -Xmx7200m
00:47:07 JVM settings: Indexer-${index} -Xmx4800m
00:47:07 JVM settings: PixelData-${index} -Xmx7200m
00:47:07 JVM settings: Repository-${index} -Xmx4800m
00:47:07
00:47:07 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 8 January 2026 1e21afa35fc068b428e25de06bd0ba67b70efa05
00:47:07 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 8 January 2026 1e21afa35fc068b428e25de06bd0ba67b70efa05
00:47:07 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 8 January 2026 1e21afa35fc068b428e25de06bd0ba67b70efa05
00:47:07 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 8 January 2026 760207a2fb8aa626eff6dd5c3e7e808c81fdf27b
00:47:07 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 8 January 2026 760207a2fb8aa626eff6dd5c3e7e808c81fdf27b
00:47:07 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 8 January 2026 760207a2fb8aa626eff6dd5c3e7e808c81fdf27b
00:47:07 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 8 January 2026 760207a2fb8aa626eff6dd5c3e7e808c81fdf27b
00:47:08 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 8 January 2026 760207a2fb8aa626eff6dd5c3e7e808c81fdf27b
00:47:08 Jar: lib/server/ome-xml.jar OME XML library 6.5.3-SNAPSHOT 8 January 2026 760207a2fb8aa626eff6dd5c3e7e808c81fdf27b
00:47:08 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:47:08 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:47:08 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
00:47:08 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:47:08 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:47:08 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:47:08 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:47:08 + deactivate
00:47:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:08 + export PATH
00:47:08 + unset _OLD_VIRTUAL_PATH
00:47:08 + '[' -n '' ']'
00:47:08 + hash -r
00:47:08 + '[' -n '' ']'
00:47:08 + unset VIRTUAL_ENV
00:47:08 + unset VIRTUAL_ENV_PROMPT
00:47:08 + '[' '!' '' = nondestructive ']'
00:47:08 + unset -f deactivate
00:47:08 Finished: SUCCESS
