00:26:34 Started by upstream project "Trigger" build number 146
00:26:34 originally caused by:
00:26:34 Started by timer
00:26:34 Running as SYSTEM
00:26:34 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:26:34 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11845316879382335457.sh
00:26:34 + source /home/settings.env
00:26:34 ++ OMERO_DB_HOST=pg
00:26:34 ++ OMERO_DB_USER=postgres
00:26:34 ++ OMERO_DB_PASS=
00:26:34 ++ OMERO_ROOT_PASS=omero
00:26:34 ++ OMERO_DATA_DIR=/OMERO
00:26:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:26:34 + OMERO_DB_NAME=OMERO-server
00:26:34 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:26:34 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:26:34 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:26:34 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:26:34 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:26:34 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:26:34 ++ deactivate nondestructive
00:26:34 ++ '[' -n '' ']'
00:26:34 ++ '[' -n '' ']'
00:26:34 ++ hash -r
00:26:34 ++ '[' -n '' ']'
00:26:34 ++ unset VIRTUAL_ENV
00:26:34 ++ unset VIRTUAL_ENV_PROMPT
00:26:34 ++ '[' '!' nondestructive = nondestructive ']'
00:26:34 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:26:34 ++ export VIRTUAL_ENV
00:26:34 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:26:34 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:26:34 ++ export PATH
00:26:34 ++ '[' -n '' ']'
00:26:34 ++ '[' -z '' ']'
00:26:34 ++ _OLD_VIRTUAL_PS1=
00:26:34 ++ PS1='(.venv3) '
00:26:34 ++ export PS1
00:26:34 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:26:34 ++ export VIRTUAL_ENV_PROMPT
00:26:34 ++ hash -r
00:26:34 + omero admin stop
00:26:53 Waiting on shutdown. Use CTRL-C to exit
00:26:53 .+ sleep 5
00:27:08 + deactivate
00:27:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:27:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:27:08 + export PATH
00:27:08 + unset _OLD_VIRTUAL_PATH
00:27:08 + '[' -n '' ']'
00:27:08 + hash -r
00:27:08 + '[' -n '' ']'
00:27:08 + unset VIRTUAL_ENV
00:27:08 + unset VIRTUAL_ENV_PROMPT
00:27:08 + '[' '!' '' = nondestructive ']'
00:27:08 + unset -f deactivate
00:27:08 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:29:26 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:29:46 + '[' false = true ']'
00:29:46 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:29:46 Skipping PURGE_DATA:CleanDbAndRepo
00:29:46 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.4.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:29:53 Copied 1 artifact from "OMERO-build" build number 125
00:29:53 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 113
00:29:54 Copied 2 artifacts from "OMERO-build-build" build number 125
00:29:54 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7862884027870108390.sh
00:29:54 + source /home/settings.env
00:29:54 ++ OMERO_DB_HOST=pg
00:29:54 ++ OMERO_DB_USER=postgres
00:29:54 ++ OMERO_DB_PASS=
00:29:54 ++ OMERO_ROOT_PASS=omero
00:29:54 ++ OMERO_DATA_DIR=/OMERO
00:29:54 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:29:54 + OMERO_DB_NAME=OMERO-server
00:29:54 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:29:54 + mkdir -p /home/omero/omero-server-data
00:29:54 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:29:54 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:29:54 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:29:54 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:29:54 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:29:54 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:29:54 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:29:54 ++ ls OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125.zip
00:29:54 + ZIP=OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125.zip
00:29:54 + '[' '!' -z '' ']'
00:29:54 + DIST=OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125
00:29:54 + unzip OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125.zip
00:29:54 Archive: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125.zip
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/blitz/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/grid/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/profiles/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/error/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/grid/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/luts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/luts/janelia/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/luts/matplotlib/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/luts/ncsa_paledit/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/luts/seaborn/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/luts/wcif/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/omero/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/omero/analysis_scripts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/omero/annotation_scripts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/omero/export_scripts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/omero/figure_scripts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/omero/import_scripts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/scripts/omero/util_scripts/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/misc/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__1/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__10/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__11/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__2/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__3/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__4/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__5/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__6/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__7/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__8/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__9/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__4/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__5/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__6/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__7/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.1__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.2__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.2__0/t/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.3__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.4__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.0__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.1__1/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.2__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.3__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4DEV__1/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4DEV__2/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4DEV__3/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/var/
00:29:54 creating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/var/tmp/
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/LICENSE.txt
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/backup.cfg
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/blitz/mail-senders.example
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/blitz/mail-server.example
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/build.properties
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/env.bat
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/env.sh
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/hibernate.properties
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/ice.config
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/logback-cli.xml
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/logback-indexing-cli.xml
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/logback-indexing.xml
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/logback.xml
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/mime.types
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/node1.cfg
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/node2.cfg
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/omero.properties
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/profiles/psql
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/rollover.cfg
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/Windows.cfg
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/error/maintainance.html
00:29:54 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/grid/README
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/grid/default.xml
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/grid/templates.xml
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/grid/windefault.xml
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/ice.config
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/internal.cfg
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/master.cfg
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/templates/robot.template
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/etc/testdropbox.config
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/history.rst
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/accessors-smart.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/activation.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/aggdesigner-algorithm.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/aircompressor.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/annotations.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/antlr.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/aopalliance.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/apache-client.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/apiguardian-api.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/arns.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/asm.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/auth.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/avatica-core.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/avatica-metrics.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/aws-core.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/aws-query-protocol.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/aws-xml-protocol.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/base.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-anim.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-awt-util.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-bridge.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-codec.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-constants.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-css.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-dom.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-ext.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-gvt.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-i18n.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-parser.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-script.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-shared-resources.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-svg-dom.jar
00:29:55 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/client/batik-svggen.jar
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00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-jdbc.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-jms.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-ldap-core.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-messaging.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-orm.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-security-core.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-security-ldap.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/spring-tx.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/sqlite-jdbc.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/subethasmtp.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/third-party-jackson-core.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/turbojpeg.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/udunits.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/url-connection-client.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/utils-lite.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/utils.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/uzaygezen-core.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/xalan.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/xercesImpl.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/xml-apis-ext.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/xml-apis.jar
00:30:08 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/xmlgraphics-commons.jar
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/xmpcore.jar
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/xpp3.jar
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/zarr-java.jar
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/lib/server/zstd-jni.jar
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/README
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/agpl.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/antlr.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/apache-v1.1.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/apache-v2.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/asm.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/bouncy_castle_license.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/bsd.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/cddl-v1.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/cpl-v10.html
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/crystalclear.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/django.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/dom4j.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/epl-v1.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/fbsd.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/freemarker.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/gpl-v2.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/gpl.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/gtest.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/iconsweets_license.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/jamon.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/jmock.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/jquery.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/jtidy.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/lgpl-3.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/lgpl-v2.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/lgpl-v2.1.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/lgpl-v3.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/lgpl.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/matplotlib.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/mit.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/mpl-v1_0.htm
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/npl-1_1.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/path.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/pil.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/postgresql.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/psf-v2.0.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/psf-v2.5.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/scons.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/slf4j.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/tablelayout.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/which.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/zlib-libpng.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/share/licenses/zpl-v2.1.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/README.txt
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/misc/Makefile
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/misc/current.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/misc/enums.py
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__1/OMERO3__7.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__3/OMERO3__5.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__4/OMERO3__5.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__4/OMERO3__1.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__5/OMERO3__4.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__6/OMERO3__5.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO3__7/OMERO3__6.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO4__0/OMERO3A__11.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:30:09 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/psql-footer.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/psql-header.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/schema.sql
00:30:10 inflating: OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125/sql/psql/OMERO5.4__0/views.sql
00:30:10 + rm -f OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125.zip
00:30:10 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-cefba2d1c3-ice36-b125 /home/omero/workspace/OMERO-server/OMERO.server
00:30:10 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:30:10 ++ deactivate nondestructive
00:30:10 ++ '[' -n '' ']'
00:30:10 ++ '[' -n '' ']'
00:30:10 ++ hash -r
00:30:10 ++ '[' -n '' ']'
00:30:10 ++ unset VIRTUAL_ENV
00:30:10 ++ unset VIRTUAL_ENV_PROMPT
00:30:10 ++ '[' '!' nondestructive = nondestructive ']'
00:30:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:30:10 ++ export VIRTUAL_ENV
00:30:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:30:10 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:30:10 ++ export PATH
00:30:10 ++ '[' -n '' ']'
00:30:10 ++ '[' -z '' ']'
00:30:10 ++ _OLD_VIRTUAL_PS1=
00:30:10 ++ PS1='(.venv3) '
00:30:10 ++ export PS1
00:30:10 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:30:10 ++ export VIRTUAL_ENV_PROMPT
00:30:10 ++ hash -r
00:30:10 + python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
00:30:11 Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70
00:30:11 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
00:30:11 Installing collected packages: pip
00:30:11 Attempting uninstall: pip
00:30:11 Found existing installation: pip 24.0
00:30:12 Uninstalling pip-24.0:
00:30:12 Successfully uninstalled pip-24.0
00:30:23 Successfully installed pip-26.2.2
00:30:23
00:30:23 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:30:23 [notice] To update, run: pip install --upgrade pip
00:30:23 + python -m pip install --upgrade certifi
00:30:24 Collecting certifi
00:30:24 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
00:30:24 Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
00:30:24 Installing collected packages: certifi
00:30:24 Successfully installed certifi-2026.10.23
00:30:24
00:30:24 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:30:24 [notice] To update, run: pip install --upgrade pip
00:30:24 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:30:25 Collecting zeroc-ice==3.6.5
00:30:25 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:30:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 22.0 MB/s 0:00:01
00:30:27 Installing collected packages: zeroc-ice
00:30:30 Successfully installed zeroc-ice-3.6.5
00:30:30
00:30:30 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:30:30 [notice] To update, run: pip install --upgrade pip
00:30:30 + pip install markdown
00:30:31 Collecting markdown
00:30:31 Using cached markdown-3.11.3-py3-none-any.whl.metadata (5.1 kB)
00:30:31 Using cached markdown-3.11.3-py3-none-any.whl (116 kB)
00:30:31 Installing collected packages: markdown
00:30:32 Successfully installed markdown-3.11.3
00:30:32
00:30:32 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:30:32 [notice] To update, run: pip install --upgrade pip
00:30:32 + pip install reportlab
00:30:33 Collecting reportlab
00:30:33 Using cached reportlab-5.1.0-py3-none-any.whl.metadata (1.6 kB)
00:30:33 Collecting pillow>=9.0.0 (from reportlab)
00:30:33 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
00:30:33 Collecting charset-normalizer (from reportlab)
00:30:33 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
00:30:34 Using cached reportlab-5.1.0-py3-none-any.whl (2.0 MB)
00:30:34 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
00:30:34 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
00:30:34 Installing collected packages: pillow, charset-normalizer, reportlab
00:30:41
00:30:41 Successfully installed charset-normalizer-3.5.2 pillow-13.0.0 reportlab-5.1.0
00:30:41
00:30:41 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:30:41 [notice] To update, run: pip install --upgrade pip
00:30:41 + pip install pyarrow
00:30:42 Collecting pyarrow
00:30:42 Using cached pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:30:42 Using cached pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (55.0 MB)
00:30:42 Installing collected packages: pyarrow
00:30:53 Successfully installed pyarrow-26.0.1
00:30:53
00:30:53 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:30:53 [notice] To update, run: pip install --upgrade pip
00:30:53 + pip install omego
00:30:54 Collecting omego
00:30:54 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:30:54 Collecting future (from omego)
00:30:54 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:30:54 Collecting yaclifw>=0.1.1 (from omego)
00:30:54 Using cached yaclifw-0.2.0-py3-none-any.whl
00:30:55 Collecting six (from yaclifw>=0.1.1->omego)
00:30:55 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:30:55 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:30:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:30:55 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:30:55 Installing collected packages: six, future, yaclifw, omego
00:31:00
00:31:00 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:31:00
00:31:00 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:31:00 [notice] To update, run: pip install --upgrade pip
00:31:00 + pip install tables
00:31:01 Collecting tables
00:31:01 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:31:01 Collecting numpy>=1.20.0 (from tables)
00:31:02 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:31:02 Collecting numexpr>=2.6.2 (from tables)
00:31:02 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:31:02 Collecting packaging (from tables)
00:31:02 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
00:31:02 Collecting py-cpuinfo (from tables)
00:31:02 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:31:02 Collecting blosc2>=2.3.0 (from tables)
00:31:02 Downloading blosc2-4.15.0-cp311-abi3-manylinux_2_28_x86_64.whl.metadata (8.4 kB)
00:31:03 Collecting ndindex (from blosc2>=2.3.0->tables)
00:31:03 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:31:03 Collecting msgpack (from blosc2>=2.3.0->tables)
00:31:03 Using cached msgpack-1.2.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
00:31:03 Collecting pydantic (from blosc2>=2.3.0->tables)
00:31:03 Using cached pydantic-2.14.3-py3-none-any.whl.metadata (141 kB)
00:31:03 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
00:31:03 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
00:31:03 Collecting rich (from blosc2>=2.3.0->tables)
00:31:04 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
00:31:04 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
00:31:04 Using cached threadpoolctl-3.8.0-py3-none-any.whl.metadata (29 kB)
00:31:04 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
00:31:04 Using cached anyio-4.16.0-py3-none-any.whl.metadata (4.7 kB)
00:31:04 Requirement already satisfied: certifi in ./.venv3/lib/python3.11/site-packages (from httpx[http2]->blosc2>=2.3.0->tables) (2026.10.23)
00:31:04 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
00:31:04 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
00:31:04 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
00:31:04 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
00:31:04 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
00:31:04 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
00:31:04 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
00:31:04 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
00:31:04 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
00:31:04 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
00:31:04 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
00:31:04 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
00:31:05 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
00:31:05 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
00:31:05 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
00:31:05 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
00:31:06 Collecting pydantic-core==2.50.4 (from pydantic->blosc2>=2.3.0->tables)
00:31:06 Using cached pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.6 kB)
00:31:06 Collecting typing-inspection>=0.4.4 (from pydantic->blosc2>=2.3.0->tables)
00:31:06 Using cached typing_inspection-0.4.5-py3-none-any.whl.metadata (2.6 kB)
00:31:06 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
00:31:06 Using cached markdown_it_py-4.3.0-py3-none-any.whl.metadata (7.9 kB)
00:31:06 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
00:31:06 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB)
00:31:06 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
00:31:06 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
00:31:06 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:31:06 Downloading blosc2-4.15.0-cp311-abi3-manylinux_2_28_x86_64.whl (7.9 MB)
00:31:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.9/7.9 MB 19.7 MB/s 0:00:00
00:31:07 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
00:31:07 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:31:07 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
00:31:07 Using cached h2-4.4.1-py3-none-any.whl (62 kB)
00:31:07 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
00:31:07 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
00:31:07 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
00:31:07 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
00:31:07 Using cached anyio-4.16.0-py3-none-any.whl (134 kB)
00:31:07 Using cached idna-3.20-py3-none-any.whl (69 kB)
00:31:07 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
00:31:08 Using cached msgpack-1.2.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (480 kB)
00:31:08 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:31:08 Using cached packaging-26.3-py3-none-any.whl (129 kB)
00:31:08 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:31:08 Using cached pydantic-2.14.3-py3-none-any.whl (494 kB)
00:31:08 Using cached pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (2.3 MB)
00:31:08 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
00:31:08 Using cached typing_inspection-0.4.5-py3-none-any.whl (14 kB)
00:31:08 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
00:31:08 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB)
00:31:08 Using cached markdown_it_py-4.3.0-py3-none-any.whl (96 kB)
00:31:08 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
00:31:08 Using cached threadpoolctl-3.8.0-py3-none-any.whl (32 kB)
00:31:08 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
00:31:47
00:31:47 Successfully installed annotated-types-0.8.0 anyio-4.16.0 blosc2-4.15.0 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.3.0 mdurl-0.1.2 msgpack-1.2.4 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.14.3 pydantic-core-2.50.4 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.8.0 typing-inspection-0.4.5 typing_extensions-4.16.0
00:31:47
00:31:47 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:31:47 [notice] To update, run: pip install --upgrade pip
00:31:48 + pip install jinja2
00:31:49 Collecting jinja2
00:31:49 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:31:49 Collecting MarkupSafe>=2.0 (from jinja2)
00:31:49 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:31:49 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:31:49 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:31:49 Installing collected packages: MarkupSafe, jinja2
00:31:50
00:31:50 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6
00:31:50
00:31:50 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:31:50 [notice] To update, run: pip install --upgrade pip
00:31:50 + pip install omero-py
00:31:51 Collecting omero-py
00:31:51 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
00:31:51 Collecting appdirs (from omero-py)
00:31:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:31:51 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py) (1.0.0)
00:31:51 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py) (2.4.6)
00:31:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py) (13.0.0)
00:31:51 Collecting PyYAML (from omero-py)
00:31:51 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:31:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py) (3.6.5)
00:31:51 Collecting requests (from omero-py)
00:31:51 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
00:31:51 Collecting portalocker (from omero-py)
00:31:51 Using cached portalocker-4.4.2-py3-none-any.whl.metadata (10 kB)
00:31:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.5.2)
00:31:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.20)
00:31:51 Collecting urllib3<3,>=1.26 (from requests->omero-py)
00:31:52 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB)
00:31:52 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (2026.10.23)
00:31:52 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
00:31:52 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:31:52 Using cached portalocker-4.4.2-py3-none-any.whl (129 kB)
00:31:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:31:52 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
00:31:52 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
00:31:52 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
00:32:06
00:32:06 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.2 requests-2.34.2 urllib3-2.8.0
00:32:06
00:32:06 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:32:06 [notice] To update, run: pip install --upgrade pip
00:32:06 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:32:07 Collecting omero-metadata
00:32:07 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-a7vqj83y/omero-metadata_5f9bbe986df94453b7ae1d17fcac249b
00:32:07 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-a7vqj83y/omero-metadata_5f9bbe986df94453b7ae1d17fcac249b
00:32:08 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e30576439fdced33d098e48faed899bd034758a5
00:32:08 Installing build dependencies: started
00:32:09 Installing build dependencies: finished with status 'done'
00:32:09 Getting requirements to build wheel: started
00:32:10 Getting requirements to build wheel: finished with status 'done'
00:32:10 Preparing metadata (pyproject.toml): started
00:32:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:32:10 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-metadata) (5.23.0)
00:32:10 Collecting pandas<3,>=2 (from omero-metadata)
00:32:10 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
00:32:10 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
00:32:10 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
00:32:10 Using cached python_dateutil-4.0.0-py3-none-any.whl.metadata (7.3 kB)
00:32:10 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
00:32:10 Using cached pytz-2026.6-py2.py3-none-any.whl.metadata (22 kB)
00:32:11 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
00:32:11 Using cached tzdata-2026.6-py2.py3-none-any.whl.metadata (1.4 kB)
00:32:11 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:32:11 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:32:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (13.0.0)
00:32:11 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
00:32:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:32:11 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
00:32:11 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.2)
00:32:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2)
00:32:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20)
00:32:11 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0)
00:32:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.10.23)
00:32:11 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
00:32:11 Using cached python_dateutil-4.0.0-py3-none-any.whl (92 kB)
00:32:11 Using cached pytz-2026.6-py2.py3-none-any.whl (506 kB)
00:32:11 Using cached tzdata-2026.6-py2.py3-none-any.whl (348 kB)
00:32:11 Building wheels for collected packages: omero-metadata
00:32:11 Building wheel for omero-metadata (pyproject.toml): started
00:32:11 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:32:11 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=612ddc973319e35b82baa48d27d2c7c1e80cc0df71a7b8a57ead751b87517fe2
00:32:11 Stored in directory: /tmp/pip-ephem-wheel-cache-qe3vij8s/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:32:11 Successfully built omero-metadata
00:32:11 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:32:48
00:32:48 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-4.0.0 pytz-2026.6 tzdata-2026.6
00:32:48
00:32:48 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:32:48 [notice] To update, run: pip install --upgrade pip
00:32:48 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:32:49 Collecting omero-cli-render
00:32:49 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-b3t7ajop/omero-cli-render_8ba23f53c3204ee98e6e86c34dcd0653
00:32:49 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-b3t7ajop/omero-cli-render_8ba23f53c3204ee98e6e86c34dcd0653
00:32:50 Running command git checkout -b merge_ci --track origin/merge_ci
00:32:50 Switched to a new branch 'merge_ci'
00:32:50 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:32:50 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 12c0fcda9eefdf57e00b4d8d59f6a042748ce7ad
00:32:50 Installing build dependencies: started
00:32:51 Installing build dependencies: finished with status 'done'
00:32:51 Getting requirements to build wheel: started
00:32:52 Getting requirements to build wheel: finished with status 'done'
00:32:52 Preparing metadata (pyproject.toml): started
00:32:52 Preparing metadata (pyproject.toml): finished with status 'done'
00:32:52 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:32:52 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (5.23.0)
00:32:52 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:32:52 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:32:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
00:32:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (13.0.0)
00:32:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:32:52 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
00:32:52 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.2)
00:32:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2)
00:32:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20)
00:32:52 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0)
00:32:52 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.10.23)
00:32:52 Building wheels for collected packages: omero-cli-render
00:32:52 Building wheel for omero-cli-render (pyproject.toml): started
00:32:52 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:32:52 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=a60b4377d6db0f678aa30164d72b37890252090af1f0395a01576d5226f52642
00:32:52 Stored in directory: /tmp/pip-ephem-wheel-cache-wtr9g7xs/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:32:52 Successfully built omero-cli-render
00:32:52 Installing collected packages: omero-cli-render
00:32:52 Successfully installed omero-cli-render-0.8.2.dev0
00:32:52
00:32:52 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:32:52 [notice] To update, run: pip install --upgrade pip
00:32:52 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:32:53 Collecting omero-cli-duplicate
00:32:53 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-h3zaf90q/omero-cli-duplicate_abad871155fa4ee08f2a1f09a1971b7a
00:32:53 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-h3zaf90q/omero-cli-duplicate_abad871155fa4ee08f2a1f09a1971b7a
00:32:54 Running command git checkout -b merge_ci --track origin/merge_ci
00:32:54 Switched to a new branch 'merge_ci'
00:32:54 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:32:54 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 0efa09cb2ff54dd64bf2aed3dedf0ef2b1390960
00:32:54 Installing build dependencies: started
00:32:55 Installing build dependencies: finished with status 'done'
00:32:55 Getting requirements to build wheel: started
00:32:56 Getting requirements to build wheel: finished with status 'done'
00:32:56 Preparing metadata (pyproject.toml): started
00:32:56 Preparing metadata (pyproject.toml): finished with status 'done'
00:32:56 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
00:32:56 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:32:56 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:32:56 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
00:32:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (13.0.0)
00:32:56 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:32:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:32:56 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
00:32:56 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.2)
00:32:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2)
00:32:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20)
00:32:56 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0)
00:32:56 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.10.23)
00:32:56 Building wheels for collected packages: omero-cli-duplicate
00:32:56 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:32:56 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:32:56 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=df0643c9d0415f526fb74a0c3694864b786b8c4377897c1ae526e48ea7b91f9c
00:32:56 Stored in directory: /tmp/pip-ephem-wheel-cache-gj99rex_/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:32:56 Successfully built omero-cli-duplicate
00:32:56 Installing collected packages: omero-cli-duplicate
00:32:56 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:32:56
00:32:56 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:32:56 [notice] To update, run: pip install --upgrade pip
00:32:57 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:32:57 Collecting omero-cli-zarr
00:32:57 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-1klabckz/omero-cli-zarr_77dfd0e177844a59a8df6cfc3c081d40
00:32:57 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-1klabckz/omero-cli-zarr_77dfd0e177844a59a8df6cfc3c081d40
00:32:58 Running command git checkout -b merge_ci --track origin/merge_ci
00:32:59 Switched to a new branch 'merge_ci'
00:32:59 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:32:59 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 311123fe9bcc73d825f7339de8269fd423e5fa1f
00:32:59 Installing build dependencies: started
00:33:00 Installing build dependencies: finished with status 'done'
00:33:00 Getting requirements to build wheel: started
00:33:00 Getting requirements to build wheel: finished with status 'done'
00:33:00 Installing backend dependencies: started
00:33:02 Installing backend dependencies: finished with status 'done'
00:33:02 Preparing metadata (pyproject.toml): started
00:33:02 Preparing metadata (pyproject.toml): finished with status 'done'
00:33:02 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
00:33:02 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:33:02 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
00:33:02 Requirement already satisfied: numpy in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
00:33:02 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:02 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB)
00:33:02 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:02 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
00:33:03 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:03 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB)
00:33:03 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:03 Using cached aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
00:33:03 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
00:33:03 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:03 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:33:04 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:04 Using cached toolz-1.2.0-py3-none-any.whl.metadata (5.2 kB)
00:33:04 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:04 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:33:04 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:04 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
00:33:04 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
00:33:04 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:33:04 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:04 Using cached click-8.5.1-py3-none-any.whl.metadata (2.6 kB)
00:33:04 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:04 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:33:04 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
00:33:04 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:05 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:33:05 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:33:05 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:05 Using cached importlib_metadata-10.2.0-py3-none-any.whl.metadata (4.6 kB)
00:33:05 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:05 Using cached s3fs-2026.9.0-py3-none-any.whl.metadata (1.2 kB)
00:33:05 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:05 Using cached zipp-4.1.2-py3-none-any.whl.metadata (3.6 kB)
00:33:05 Collecting lazy-importer>=0.1 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:05 Using cached lazy_importer-0.1.0-py3-none-any.whl.metadata (7.3 kB)
00:33:05 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:05 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
00:33:05 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:05 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB)
00:33:05 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0)
00:33:06 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:06 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
00:33:06 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0)
00:33:06 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.5)
00:33:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:33:06 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:33:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (13.0.0)
00:33:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:33:06 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.4.2)
00:33:06 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:06 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:33:06 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:06 Using cached aiobotocore-3.10.0-py3-none-any.whl.metadata (32 kB)
00:33:07 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:07 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:33:07 Collecting botocore<1.43.118,>=1.43.115 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:07 Using cached botocore-1.43.117-py3-none-any.whl.metadata (5.6 kB)
00:33:07 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:07 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:33:07 Collecting multidict<8.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:08 Using cached multidict-7.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (6.1 kB)
00:33:08 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:33:08 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:08 Using cached wrapt-2.5.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.6 kB)
00:33:08 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:08 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
00:33:08 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:08 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:33:08 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:08 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
00:33:09 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:09 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:33:09 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:09 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (25 kB)
00:33:09 Collecting yarl<2.0,>=1.25.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:09 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (111 kB)
00:33:09 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib/python3.11/site-packages (from botocore<1.43.118,>=1.43.115->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.8.0)
00:33:09 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:33:09 Requirement already satisfied: idna>=2.0 in ./.venv3/lib/python3.11/site-packages (from yarl<2.0,>=1.25.1->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.20)
00:33:09 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:09 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:33:10 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:10 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:33:10 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:10 Using cached imageio-2.38.1-py3-none-any.whl.metadata (9.7 kB)
00:33:10 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:10 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
00:33:10 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:10 Using cached lazy_loader-0.6-py3-none-any.whl.metadata (6.0 kB)
00:33:10 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:10 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:33:10 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:10 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.2 kB)
00:33:10 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:33:10 Using cached numcodecs-0.16.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:33:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.5.2)
00:33:10 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.10.23)
00:33:11 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
00:33:11 Using cached dask-2026.8.0-py3-none-any.whl (1.5 MB)
00:33:11 Using cached click-8.5.1-py3-none-any.whl (126 kB)
00:33:11 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:33:11 Using cached fsspec-2026.9.0-py3-none-any.whl (221 kB)
00:33:11 Using cached importlib_metadata-10.2.0-py3-none-any.whl (34 kB)
00:33:11 Using cached lazy_importer-0.1.0-py3-none-any.whl (12 kB)
00:33:11 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
00:33:11 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
00:33:11 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
00:33:11 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:33:11 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
00:33:11 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB)
00:33:11 Using cached aiobotocore-3.10.0-py3-none-any.whl (102 kB)
00:33:11 Using cached aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.9 MB)
00:33:11 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:33:11 Using cached botocore-1.43.117-py3-none-any.whl (16.1 MB)
00:33:11 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:33:12 Using cached multidict-7.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (510 kB)
00:33:12 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:33:12 Using cached wrapt-2.5.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (240 kB)
00:33:12 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB)
00:33:12 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
00:33:12 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:33:12 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
00:33:12 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:33:12 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB)
00:33:12 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:33:12 Using cached imageio-2.38.1-py3-none-any.whl (328 kB)
00:33:12 Using cached lazy_loader-0.6-py3-none-any.whl (8.8 kB)
00:33:12 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:33:12 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:33:12 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:33:12 Using cached toolz-1.2.0-py3-none-any.whl (60 kB)
00:33:12 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
00:33:13 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:33:13 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB)
00:33:13 Using cached numcodecs-0.16.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.3 MB)
00:33:13 Using cached zipp-4.1.2-py3-none-any.whl (10 kB)
00:33:13 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:33:13 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:33:13 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:33:13 Building wheels for collected packages: omero-cli-zarr
00:33:13 Building wheel for omero-cli-zarr (pyproject.toml): started
00:33:14 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:33:14 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g311123f-py3-none-any.whl size=39538 sha256=87e118c8c651a1df326dee6fddb512fe68b3876d6e7f1d11e6f6ed0b48062eff
00:33:14 Stored in directory: /tmp/pip-ephem-wheel-cache-b_nqnvhs/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:33:14 Successfully built omero-cli-zarr
00:33:14 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, python-dateutil, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, lazy-importer, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:33:41 Attempting uninstall: python-dateutil
00:33:41 Found existing installation: python-dateutil 4.0.0
00:33:41 Uninstalling python-dateutil-4.0.0:
00:33:41 Successfully uninstalled python-dateutil-4.0.0
00:33:42 Attempting uninstall: pydantic-core
00:33:42 Found existing installation: pydantic_core 2.50.4
00:33:42 Uninstalling pydantic_core-2.50.4:
00:33:42 Successfully uninstalled pydantic_core-2.50.4
00:34:06 Attempting uninstall: pydantic
00:34:06 Found existing installation: pydantic 2.14.3
00:34:07 Uninstalling pydantic-2.14.3:
00:34:07 Successfully uninstalled pydantic-2.14.3
00:34:37
00:34:37 Successfully installed Deprecated-1.3.1 aiobotocore-3.10.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.117 click-8.5.1 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.1 importlib_metadata-10.2.0 jmespath-1.1.0 lazy-importer-0.1.0 lazy-loader-0.6 locket-1.0.0 multidict-7.2.1 networkx-3.6.1 numcodecs-0.16.6 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g311123f partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 python-dateutil-2.9.0.post0 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.2.0 wrapt-2.5.2 yarl-1.25.1 zarr-3.1.6 zipp-4.1.2
00:34:37
00:34:37 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:37 [notice] To update, run: pip install --upgrade pip
00:34:37 + pip install omero-certificates
00:34:38 Collecting omero-certificates
00:34:38 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:34:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-certificates) (5.23.0)
00:34:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:34:38 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:34:38 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
00:34:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (13.0.0)
00:34:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:34:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:34:38 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
00:34:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.2)
00:34:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2)
00:34:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20)
00:34:38 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0)
00:34:38 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.10.23)
00:34:38 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:34:38 Installing collected packages: omero-certificates
00:34:39 Successfully installed omero-certificates-0.4.0
00:34:39
00:34:39 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:39 [notice] To update, run: pip install --upgrade pip
00:34:39 + for x in *.tar.gz
00:34:39 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:34:39 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:34:39 Installing build dependencies: started
00:34:41 Installing build dependencies: finished with status 'done'
00:34:41 Getting requirements to build wheel: started
00:34:41 Getting requirements to build wheel: finished with status 'done'
00:34:41 Preparing metadata (pyproject.toml): started
00:34:41 Preparing metadata (pyproject.toml): finished with status 'done'
00:34:41 Requirement already satisfied: omero-py in ./.venv3/lib/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
00:34:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:34:41 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:34:41 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
00:34:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (13.0.0)
00:34:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:34:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:34:41 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
00:34:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.2)
00:34:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2)
00:34:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20)
00:34:41 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0)
00:34:41 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.10.23)
00:34:41 Building wheels for collected packages: omero-dropbox
00:34:41 Building wheel for omero-dropbox (pyproject.toml): started
00:34:41 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:34:41 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=8cdaa19e6fa718e97a27a2c4fee08575b2e334511c33e7dac253b9fb0c9767bc
00:34:41 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:34:41 Successfully built omero-dropbox
00:34:42 Installing collected packages: omero-dropbox
00:34:42 Successfully installed omero-dropbox-5.7.1.dev0
00:34:42
00:34:42 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:42 [notice] To update, run: pip install --upgrade pip
00:34:42 + for x in *.tar.gz
00:34:42 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:34:43 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:34:43 Installing build dependencies: started
00:34:44 Installing build dependencies: finished with status 'done'
00:34:44 Getting requirements to build wheel: started
00:34:44 Getting requirements to build wheel: finished with status 'done'
00:34:44 Preparing metadata (pyproject.toml): started
00:34:44 Preparing metadata (pyproject.toml): finished with status 'done'
00:34:44 Building wheels for collected packages: omero_marshal
00:34:44 Building wheel for omero_marshal (pyproject.toml): started
00:34:45 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:34:45 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=964dd092afc1883d49cdd12ac76f2ad7dbe2d42a925069ba45b5ac417cbae9a7
00:34:45 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:34:45 Successfully built omero_marshal
00:34:45 Installing collected packages: omero_marshal
00:34:47 Successfully installed omero_marshal-0.9.2.dev0
00:34:47
00:34:47 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:47 [notice] To update, run: pip install --upgrade pip
00:34:47 + for x in *.tar.gz
00:34:47 + pip install -U omero_py-5.23.1.dev0.tar.gz
00:34:47 Processing ./omero_py-5.23.1.dev0.tar.gz
00:34:48 Installing build dependencies: started
00:34:49 Installing build dependencies: finished with status 'done'
00:34:49 Getting requirements to build wheel: started
00:34:49 Getting requirements to build wheel: finished with status 'done'
00:34:49 Preparing metadata (pyproject.toml): started
00:34:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:34:49 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
00:34:49 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
00:34:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
00:34:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (13.0.0)
00:34:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
00:34:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
00:34:49 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
00:34:49 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.2)
00:34:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2)
00:34:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20)
00:34:49 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0)
00:34:49 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.10.23)
00:34:49 Building wheels for collected packages: omero-py
00:34:49 Building wheel for omero-py (pyproject.toml): started
00:34:50 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:34:50 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787196 sha256=36f1a2b506a278b2a0a489498dafa876e3d4b8381ea858e5bca4d7abf6fbb225
00:34:50 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
00:34:50 Successfully built omero-py
00:34:51 Installing collected packages: omero-py
00:34:51 Attempting uninstall: omero-py
00:34:51 Found existing installation: omero-py 5.23.0
00:34:51 Uninstalling omero-py-5.23.0:
00:35:00 Successfully uninstalled omero-py-5.23.0
00:35:12 Successfully installed omero-py-5.23.1.dev0
00:35:12
00:35:12 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:35:12 [notice] To update, run: pip install --upgrade pip
00:35:12 + for x in *.tar.gz
00:35:12 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:35:13 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:35:13 Installing build dependencies: started
00:35:14 Installing build dependencies: finished with status 'done'
00:35:14 Getting requirements to build wheel: started
00:35:15 Getting requirements to build wheel: finished with status 'done'
00:35:15 Preparing metadata (pyproject.toml): started
00:35:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:15 Building wheels for collected packages: omero-scripts
00:35:15 Building wheel for omero-scripts (pyproject.toml): started
00:35:15 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:35:15 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137639 sha256=8af032199a8e0f07fe39efcf2bc1273103afa2ea308fc0ed66889e3355567aec
00:35:15 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:35:15 Successfully built omero-scripts
00:35:15 Installing collected packages: omero-scripts
00:35:16 Successfully installed omero-scripts-5.10.1.dev0
00:35:16
00:35:16 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:35:16 [notice] To update, run: pip install --upgrade pip
00:35:16 + for x in *.tar.gz
00:35:16 + pip install -U omero_web-5.33.4.dev0.tar.gz
00:35:17 Processing ./omero_web-5.33.4.dev0.tar.gz
00:35:17 Installing build dependencies: started
00:35:18 Installing build dependencies: finished with status 'done'
00:35:18 Getting requirements to build wheel: started
00:35:18 Getting requirements to build wheel: finished with status 'done'
00:35:18 Preparing metadata (pyproject.toml): started
00:35:19 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:19 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (5.23.1.dev0)
00:35:19 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.4.dev0)
00:35:19 Using cached concurrent_log_handler-0.9.31-py3-none-any.whl.metadata (30 kB)
00:35:19 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.4.dev0)
00:35:19 Using cached django-5.2.19-py3-none-any.whl.metadata (4.1 kB)
00:35:19 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.4.dev0)
00:35:19 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:35:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.4.dev0)
00:35:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:35:20 Collecting whitenoise>=5.3.0 (from omero-web==5.33.4.dev0)
00:35:20 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:35:20 Collecting gunicorn>=19.3 (from omero-web==5.33.4.dev0)
00:35:20 Using cached gunicorn-27.0.0-py3-none-any.whl.metadata (5.6 kB)
00:35:20 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (0.9.2.dev0)
00:35:20 Requirement already satisfied: Pillow in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (13.0.0)
00:35:20 Requirement already satisfied: pytz in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (2026.6)
00:35:20 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (4.4.2)
00:35:20 Requirement already satisfied: packaging in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (26.3)
00:35:20 Collecting importlib-resources (from omero-web==5.33.4.dev0)
00:35:20 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
00:35:20 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.4.dev0)
00:35:20 Using cached asgiref-3.13.0-py3-none-any.whl.metadata (12 kB)
00:35:20 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.4.dev0)
00:35:20 Using cached sqlparse-0.6.1-py3-none-any.whl.metadata (6.9 kB)
00:35:20 Requirement already satisfied: setuptools in ./.venv3/lib/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.4.dev0) (79.0.1)
00:35:20 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.4.dev0)
00:35:20 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
00:35:20 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (1.4.4)
00:35:20 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (1.0.0)
00:35:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.4.6)
00:35:20 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (6.0.3)
00:35:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.6.5)
00:35:20 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.34.2)
00:35:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.5.2)
00:35:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.20)
00:35:20 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.8.0)
00:35:20 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (2026.10.23)
00:35:20 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:35:20 Using cached django-5.2.19-py3-none-any.whl (8.3 MB)
00:35:20 Using cached asgiref-3.13.0-py3-none-any.whl (27 kB)
00:35:20 Using cached concurrent_log_handler-0.9.31-py3-none-any.whl (36 kB)
00:35:21 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:35:21 Using cached gunicorn-27.0.0-py3-none-any.whl (261 kB)
00:35:21 Using cached sqlparse-0.6.1-py3-none-any.whl (51 kB)
00:35:21 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:35:21 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
00:35:21 Using cached wheel-0.48.0-py3-none-any.whl (33 kB)
00:35:21 Building wheels for collected packages: omero-web
00:35:21 Building wheel for omero-web (pyproject.toml): started
00:35:22 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:35:22 Created wheel for omero-web: filename=omero_web-5.33.4.dev0-py3-none-any.whl size=2820609 sha256=dabe9178a99271bcbc07df7951e255ad33e1a75e933ca2384528f37a21369ddd
00:35:22 Stored in directory: /home/omero/.cache/pip/wheels/77/9e/f5/52a9e67ca1a8b7bccc74bb6768e254cc090a07d1bf56bba985
00:35:22 Successfully built omero-web
00:35:22 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:36:09
00:36:09 Successfully installed Django-5.2.19 asgiref-3.13.0 concurrent-log-handler-0.9.31 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-27.0.0 importlib-resources-7.1.0 omero-web-5.33.4.dev0 sqlparse-0.6.1 wheel-0.48.0 whitenoise-6.12.0
00:36:09
00:36:09 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:36:09 [notice] To update, run: pip install --upgrade pip
00:36:09 + wget https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
00:36:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:36:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:36:09 --2026-11-12 00:36:09-- https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
00:36:09 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ...
00:36:09 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:36:09 HTTP request sent, awaiting response... 200 OK
00:36:10 Length: 133725 (131K) [text/plain]
00:36:10 Saving to: ‘Figure_To_Pdf.py’
00:36:10
00:36:10 0K .......... .......... .......... .......... .......... 38% 4.47M 0s
00:36:10 50K .......... .......... .......... .......... .......... 76% 5.72M 0s
00:36:10 100K .......... .......... .......... 100% 20.0M=0.02s
00:36:10
00:36:10 2026-11-12 00:36:10 (6.09 MB/s) - ‘Figure_To_Pdf.py’ saved [133725/133725]
00:36:10
00:36:10 + chmod 755 Figure_To_Pdf.py
00:36:10 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:36:10 + omero config set omero.db.name OMERO-server
00:36:16 + omero config set omero.db.host pg
00:36:20 + omero config set omero.db.user postgres
00:36:24 + omero config set omero.data.dir /home/omero/omero-server-data
00:36:28 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:36:32 + omero config set omero.db.poolsize 25
00:36:36 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:36:40 + omero config set omero.security.trustStorePassword changeit
00:36:44 + omero config set omero.mail.config true
00:36:48 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:36:52 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:36:56 + omero certificates
00:36:59 OpenSSL 3.5.8 25 Aug 2026 (Library: OpenSSL 3.5.8 25 Aug 2026)
00:36:59 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:37:00 + '[' false = true ']'
00:37:00 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:37:00 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:37:00 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:37:00 2026-11-12 00:37:00,460 [ omego.db] DEBUG dbcommand => upgrade
00:37:00 2026-11-12 00:37:00,460 [ omego.db] DEBUG dbhost => localhost
00:37:00 2026-11-12 00:37:00,460 [ omego.db] DEBUG dbname => OMERO-server
00:37:00 2026-11-12 00:37:00,460 [ omego.db] DEBUG dbpass => omero
00:37:00 2026-11-12 00:37:00,460 [ omego.db] DEBUG dbuser => omero
00:37:00 2026-11-12 00:37:00,460 [ omego.db] DEBUG rootpass => omero
00:37:00 2026-11-12 00:37:00,460 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:37:00 2026-11-12 00:37:00,460 [omego.extern] INFO Executing : omero version
00:37:04 OMERO.py version:
00:37:04 OMERO.server version:
00:37:04 5.6.3-689-cefba2d1c3-ice36-b125
00:37:04 5.23.1.dev0
00:37:04 2026-11-12 00:37:04,547 [omego.extern] INFO Completed [4.087 s]
00:37:04 2026-11-12 00:37:04,547 [omego.extern] DEBUG Using omero CLI from omero
00:37:04 2026-11-12 00:37:04,547 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:37:04 2026-11-12 00:37:04,547 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:37:04 2026-11-12 00:37:04,547 [omego.extern] INFO Executing : omero config get --show-password
00:37:08 2026-11-12 00:37:08,573 [omego.extern] INFO Completed [4.025 s]
00:37:08 2026-11-12 00:37:08,573 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:37:08 2026-11-12 00:37:08,573 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:37:08 2026-11-12 00:37:08,683 [omego.extern] INFO Completed [0.110 s]
00:37:08 2026-11-12 00:37:08,683 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.15\n'
00:37:08 2026-11-12 00:37:08,683 [ omego.db] INFO psql version: psql (PostgreSQL) 16.15
00:37:08
00:37:08 2026-11-12 00:37:08,683 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:37:08 2026-11-12 00:37:08,683 [omego.extern] INFO Executing : omero config get --show-password
00:37:12 2026-11-12 00:37:12,864 [omego.extern] INFO Completed [4.181 s]
00:37:12 2026-11-12 00:37:12,864 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:37:12 2026-11-12 00:37:12,864 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:37:12 2026-11-12 00:37:12,882 [omego.extern] INFO Completed [0.018 s]
00:37:12 2026-11-12 00:37:12,882 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.13") at port "5432".\n'
00:37:12 2026-11-12 00:37:12,882 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:37:12 2026-11-12 00:37:12,882 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:37:12 2026-11-12 00:37:12,882 [omego.extern] INFO Executing : omero config get --show-password
00:37:17 2026-11-12 00:37:17,019 [omego.extern] INFO Completed [4.136 s]
00:37:17 2026-11-12 00:37:17,019 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:37:17 2026-11-12 00:37:17,019 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:37:17 2026-11-12 00:37:17,090 [omego.extern] INFO Completed [0.071 s]
00:37:17 2026-11-12 00:37:17,090 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:37:17 2026-11-12 00:37:17,090 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:37:17 2026-11-12 00:37:17,137 [ omego.db] INFO Database is already at OMERO5.4__0
00:37:17 + export LANG=en_US.UTF-8
00:37:17 + LANG=en_US.UTF-8
00:37:17 + export LANGUAGE=en_US:en
00:37:17 + LANGUAGE=en_US:en
00:37:17 + export LC_ALL=en_US.UTF-8
00:37:17 + LC_ALL=en_US.UTF-8
00:37:17 + BUILD_ID=DONT_KILL_ME
00:37:17 + omero admin start
00:37:28 No descriptor given. Using etc/grid/default.xml
00:37:38 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:37:38 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:37:38 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:37:38 Waiting on startup. Use CTRL-C to exit
00:37:39 + omero admin waitup
00:37:44 Waiting on startup. Use CTRL-C to exit
00:37:45 + omero admin diagnostics
00:37:48
00:37:48 ================================================================================
00:37:48 OMERO Diagnostics (admin)
00:37:48 ================================================================================
00:37:48
00:37:48 Commands: java -version 21.0.13 (/usr/bin/java)
00:37:48 Commands: python -V 3.11.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:37:48 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:37:48 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:37:48 Commands: psql --version 16.15 (/usr/bin/psql)
00:37:48 Commands: openssl version 3.5.825 (/usr/bin/openssl)
00:37:48
00:37:48 Component: OMERO.py 5.23.1.dev0
00:37:48 Component: OMERO.server 5.6.3-689-cefba2d1c3-ice36-b125
00:37:48
00:37:48 Server: icegridnode running
00:37:48 Server: Blitz-0 active (pid = 10274, enabled)
00:37:48 Server: Indexer-0 active (pid = 10299, enabled)
00:37:48 Server: OMERO.Glacier2 active (pid = 10295, enabled)
00:37:48 Server: OMERO.IceStorm active (pid = 10320, enabled)
00:37:48 Server: Processor-0 active (pid = 10330, enabled)
00:37:48 Server: Tables-0 active (pid = 10306, enabled)
00:37:48
00:37:48 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:37:48 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1
00:37:48 Log files: DropBox.log n/a
00:37:48 Log files: FileServer.log n/a
00:37:48 Log files: Indexer-0.log 2.6 KB
00:37:48 Log files: MonitorServer.log n/a
00:37:48 Log files: Processor-0.log 735 B
00:37:48 Log files: Tables-0.log 961 B
00:37:48 Log files: TestDropBox.log n/a
00:37:48 Log files: master.err empty
00:37:48 Log files: master.out 30.7 KB
00:37:48 Log files: Total size 0.07 MB
00:37:48
00:37:48
00:37:48 Environment:OMERO_HOME=(unset)
00:37:48 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:37:48 Environment:OMERO_NODE=(unset)
00:37:48 Environment:OMERO_MASTER=(unset)
00:37:48 Environment:OMERO_USERDIR=(unset)
00:37:48 Environment:OMERO_TMPDIR=(unset)
00:37:48 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:37:48 Environment:PYTHONPATH=(unset)
00:37:48 Environment:ICE_HOME=/opt/ice-3.6.5
00:37:48 Environment:LD_LIBRARY_PATH=(unset)
00:37:48 Environment:DYLD_LIBRARY_PATH=(unset)
00:37:48
00:37:48 OMERO SSL port:4064
00:37:48 OMERO TCP port:4063
00:37:48 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:37:49 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:37:49
00:37:49 JVM settings: Blitz-${index} -Xmx5007m
00:37:49 JVM settings: Indexer-${index} -Xmx3338m
00:37:49 JVM settings: PixelData-${index} -Xmx5007m
00:37:49 JVM settings: Repository-${index} -Xmx3338m
00:37:49
00:37:49 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:37:49 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:37:49 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:37:49 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
00:37:49 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
00:37:49 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
00:37:49 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
00:37:49 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
00:37:49 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
00:37:49 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
00:37:49 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:37:49 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
00:37:49 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:37:49 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
00:37:49 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:37:49 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
00:37:49 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.8.0-SNAPSHOT 5fb647cc3db33bd28d03def9a2d5985bcde9dfa1
00:37:49 + deactivate
00:37:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:37:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:37:49 + export PATH
00:37:49 + unset _OLD_VIRTUAL_PATH
00:37:49 + '[' -n '' ']'
00:37:49 + hash -r
00:37:49 + '[' -n '' ']'
00:37:49 + unset VIRTUAL_ENV
00:37:49 + unset VIRTUAL_ENV_PROMPT
00:37:49 + '[' '!' '' = nondestructive ']'
00:37:49 + unset -f deactivate
00:37:49 Finished: SUCCESS
