09:44:57 Started by user devspace
09:44:57 Running as SYSTEM
09:44:57 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:44:58 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14697105322132298291.sh
09:44:58 + source /home/settings.env
09:44:58 ++ OMERO_DB_HOST=pg
09:44:58 ++ OMERO_DB_USER=postgres
09:44:58 ++ OMERO_DB_PASS=
09:44:58 ++ OMERO_ROOT_PASS=omero
09:44:58 ++ OMERO_DATA_DIR=/OMERO
09:44:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:44:58 + OMERO_DB_NAME=OMERO-server
09:44:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:44:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:44:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:44:58 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:44:58 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:44:58 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:44:58 ++ deactivate nondestructive
09:44:58 ++ '[' -n '' ']'
09:44:58 ++ '[' -n '' ']'
09:44:58 ++ '[' -n /bin/bash -o -n '' ']'
09:44:58 ++ hash -r
09:44:58 ++ '[' -n '' ']'
09:44:58 ++ unset VIRTUAL_ENV
09:44:58 ++ '[' '!' nondestructive = nondestructive ']'
09:44:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:44:58 ++ export VIRTUAL_ENV
09:44:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:44:58 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:44:58 ++ export PATH
09:44:58 ++ '[' -n '' ']'
09:44:58 ++ '[' -z '' ']'
09:44:58 ++ _OLD_VIRTUAL_PS1=
09:44:58 ++ PS1='(.venv3) '
09:44:58 ++ export PS1
09:44:58 ++ '[' -n /bin/bash -o -n '' ']'
09:44:58 ++ hash -r
09:44:58 + omero admin stop
09:45:21 Server not running
09:45:21 + echo not running
09:45:21 not running
09:45:21 + sleep 5
09:45:26 + deactivate
09:45:26 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:45:26 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:45:26 + export PATH
09:45:26 + unset _OLD_VIRTUAL_PATH
09:45:26 + '[' -n '' ']'
09:45:26 + '[' -n /bin/bash -o -n '' ']'
09:45:26 + hash -r
09:45:26 + '[' -n '' ']'
09:45:26 + unset VIRTUAL_ENV
09:45:26 + '[' '!' '' = nondestructive ']'
09:45:26 + unset -f deactivate
09:45:26 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:45:27 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
09:45:30 + '[' false = true ']'
09:45:30 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:45:30 Skipping PURGE_DATA:CleanDbAndRepo
09:45:30 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.4.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:45:33 Copied 1 artifact from "OMERO-build" build number 118
09:45:33 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 117
09:45:33 Copied 2 artifacts from "OMERO-build-build" build number 120
09:45:33 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2868787586371746982.sh
09:45:33 + source /home/settings.env
09:45:33 ++ OMERO_DB_HOST=pg
09:45:33 ++ OMERO_DB_USER=postgres
09:45:33 ++ OMERO_DB_PASS=
09:45:33 ++ OMERO_ROOT_PASS=omero
09:45:33 ++ OMERO_DATA_DIR=/OMERO
09:45:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:45:33 + OMERO_DB_NAME=OMERO-server
09:45:33 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:45:33 + mkdir -p /home/omero/omero-server-data
09:45:33 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:45:33 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:45:33 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:45:33 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:45:33 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:45:33 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:45:33 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:45:33 ++ ls OMERO.server-5.6.3-481-b86becb6dd-ice36.zip
09:45:33 + ZIP=OMERO.server-5.6.3-481-b86becb6dd-ice36.zip
09:45:33 + '[' '!' -z '' ']'
09:45:33 + DIST=OMERO.server-5.6.3-481-b86becb6dd-ice36
09:45:33 + unzip OMERO.server-5.6.3-481-b86becb6dd-ice36.zip
09:45:33 Archive: OMERO.server-5.6.3-481-b86becb6dd-ice36.zip
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/blitz/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/grid/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/profiles/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/error/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/janelia/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/ncsa_paledit/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/luts/wcif/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/analysis_scripts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/annotation_scripts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/export_scripts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/figure_scripts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/import_scripts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/scripts/omero/util_scripts/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/server/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/misc/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__1/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__10/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__11/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__2/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__3/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__4/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__5/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__6/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__7/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__8/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__9/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__4/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__5/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__6/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3__7/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.1__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/t/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.3__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.4__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__1/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__2/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__3/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/
09:45:33 creating: OMERO.server-5.6.3-481-b86becb6dd-ice36/var/
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/LICENSE.txt
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/backup.cfg
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/blitz/mail-senders.example
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/blitz/mail-server.example
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/build.properties
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/env.bat
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/env.sh
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/hibernate.properties
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/ice.config
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback-cli.xml
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback-indexing-cli.xml
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback-indexing.xml
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/logback.xml
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/mime.types
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/node1.cfg
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/node2.cfg
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/omero.properties
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/profiles/psql
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/rollover.cfg
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/Windows.cfg
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/error/maintainance.html
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/README
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/default.xml
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/templates.xml
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/grid/windefault.xml
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/ice.config
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/internal.cfg
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/master.cfg
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/templates/robot.template
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/etc/testdropbox.config
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/history.rst
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/OMEZarrReader.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/activation.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aggdesigner-algorithm.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aircompressor.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/annotations.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/antlr.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aopalliance.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/avatica-core.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/avatica-metrics.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aws-java-sdk-core.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aws-java-sdk-kms.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/aws-java-sdk-s3.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/base.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-all.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-anim.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-awt-util.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-bridge.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-codec.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-constants.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-css.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-dom.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-ext.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-extension.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-gui-util.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-gvt.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-i18n.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-parser.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-rasterizer-ext.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-rasterizer.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-script.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-slideshow.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-squiggle-ext.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-squiggle.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-svg-dom.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-svgbrowser.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-svggen.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-svgpp.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-svgrasterizer.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-swing.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-transcoder.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-ttf2svg.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-util.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/batik-xml.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/btm.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/bufr.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/byte-buddy-agent.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/byte-buddy.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/c3p0.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/calcite-core.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/calcite-linq4j.jar
09:45:33 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/client/cdm-core.jar
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/server/subethasmtp.jar
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/server/xmpcore.jar
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/lib/server/xpp3.jar
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/README
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/jmock.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/jquery.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/jtidy.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/lgpl-3.0.txt
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/lgpl-v3.0.txt
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/matplotlib.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/mit.txt
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/npl-1_1.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/path.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/pil.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/postgresql.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/psf-v2.0.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/psf-v2.5.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/scons.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/slf4j.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/tablelayout.txt
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/share/licenses/zlib-libpng.txt
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/README.txt
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/misc/Makefile
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/misc/current.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/misc/enums.py
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
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09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/psql-header.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/schema.sql
09:45:36 inflating: OMERO.server-5.6.3-481-b86becb6dd-ice36/sql/psql/OMERO5.4__0/views.sql
09:45:36 + rm -f OMERO.server-5.6.3-481-b86becb6dd-ice36.zip
09:45:36 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-481-b86becb6dd-ice36 /home/omero/workspace/OMERO-server/OMERO.server
09:45:36 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:45:36 ++ deactivate nondestructive
09:45:36 ++ '[' -n '' ']'
09:45:36 ++ '[' -n '' ']'
09:45:36 ++ '[' -n /bin/bash -o -n '' ']'
09:45:36 ++ hash -r
09:45:36 ++ '[' -n '' ']'
09:45:36 ++ unset VIRTUAL_ENV
09:45:36 ++ '[' '!' nondestructive = nondestructive ']'
09:45:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:45:36 ++ export VIRTUAL_ENV
09:45:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:45:36 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:45:36 ++ export PATH
09:45:36 ++ '[' -n '' ']'
09:45:36 ++ '[' -z '' ']'
09:45:36 ++ _OLD_VIRTUAL_PS1=
09:45:36 ++ PS1='(.venv3) '
09:45:36 ++ export PS1
09:45:36 ++ '[' -n /bin/bash -o -n '' ']'
09:45:36 ++ hash -r
09:45:36 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
09:45:36 Collecting zeroc-ice==3.6.5
09:45:37 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
09:45:41 Installing collected packages: zeroc-ice
09:45:41 Successfully installed zeroc-ice-3.6.5
09:45:41 + pip install -U pip future
09:45:42 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
09:45:42 Collecting pip
09:45:42 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB)
09:45:42 Collecting future
09:45:42 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:45:42 Installing collected packages: pip, future
09:45:42 Attempting uninstall: pip
09:45:42 Found existing installation: pip 21.2.3
09:45:42 Uninstalling pip-21.2.3:
09:45:42 Successfully uninstalled pip-21.2.3
09:45:44 Successfully installed future-1.0.0 pip-24.1.2
09:45:44 + pip install markdown
09:45:44 Collecting markdown
09:45:44 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
09:45:45 Collecting importlib-metadata>=4.4 (from markdown)
09:45:45 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB)
09:45:45 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
09:45:45 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
09:45:45 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
09:45:45 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB)
09:45:45 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB)
09:45:45 Installing collected packages: zipp, importlib-metadata, markdown
09:45:45 Successfully installed importlib-metadata-8.0.0 markdown-3.6 zipp-3.19.2
09:45:45 + pip install reportlab
09:45:46 Collecting reportlab
09:45:46 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
09:45:46 Collecting pillow>=9.0.0 (from reportlab)
09:45:46 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
09:45:47 Collecting chardet (from reportlab)
09:45:47 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
09:45:47 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
09:45:47 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
09:45:47 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
09:45:47 Installing collected packages: pillow, chardet, reportlab
09:45:48 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
09:45:48 + pip install omego
09:45:49 Collecting omego
09:45:49 Using cached omego-0.7.0-py3-none-any.whl
09:45:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
09:45:49 Collecting yaclifw>=0.1.1 (from omego)
09:45:49 Using cached yaclifw-0.2.0-py3-none-any.whl
09:45:49 Collecting six (from yaclifw>=0.1.1->omego)
09:45:49 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
09:45:49 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
09:45:49 Installing collected packages: six, yaclifw, omego
09:45:49 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
09:45:49 + pip install tables
09:45:50 Collecting tables
09:45:50 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
09:45:50 Collecting numpy>=1.19.0 (from tables)
09:45:50 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
09:45:50 Collecting numexpr>=2.6.2 (from tables)
09:45:51 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
09:45:51 Collecting packaging (from tables)
09:45:51 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
09:45:51 Collecting py-cpuinfo (from tables)
09:45:51 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:45:51 Collecting blosc2>=2.3.0 (from tables)
09:45:51 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
09:45:51 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
09:45:51 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
09:45:51 Collecting msgpack (from blosc2>=2.3.0->tables)
09:45:51 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
09:45:51 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
09:45:51 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
09:45:51 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
09:45:52 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB)
09:45:52 Using cached packaging-24.1-py3-none-any.whl (53 kB)
09:45:52 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:45:52 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
09:45:52 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
09:45:52 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
09:45:55 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.0 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
09:45:55 + pip install jinja2
09:45:56 Collecting jinja2
09:45:56 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
09:45:56 Collecting MarkupSafe>=2.0 (from jinja2)
09:45:56 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
09:45:56 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
09:45:56 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
09:45:56 Installing collected packages: MarkupSafe, jinja2
09:45:56 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
09:45:56 + pip install omero-py
09:45:57 Collecting omero-py
09:45:57 Using cached omero_py-5.19.3-py3-none-any.whl.metadata (6.3 kB)
09:45:57 Collecting urllib3<2 (from omero-py)
09:45:57 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
09:45:57 Collecting appdirs (from omero-py)
09:45:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:45:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
09:45:57 Collecting numpy<2 (from omero-py)
09:45:57 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
09:45:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
09:45:57 Collecting PyYAML (from omero-py)
09:45:57 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
09:45:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
09:45:58 Collecting requests (from omero-py)
09:45:58 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
09:45:58 Collecting portalocker (from omero-py)
09:45:58 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
09:45:58 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
09:45:58 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
09:45:58 Collecting idna<4,>=2.5 (from requests->omero-py)
09:45:58 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
09:45:58 Collecting certifi>=2017.4.17 (from requests->omero-py)
09:45:58 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
09:45:58 Using cached omero_py-5.19.3-py3-none-any.whl (2.8 MB)
09:45:58 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
09:45:58 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
09:45:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:45:58 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
09:45:58 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
09:45:59 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
09:45:59 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
09:45:59 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
09:45:59 Using cached idna-3.7-py3-none-any.whl (66 kB)
09:45:59 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
09:45:59 Attempting uninstall: numpy
09:45:59 Found existing installation: numpy 2.0.0
09:45:59 Uninstalling numpy-2.0.0:
09:45:59 Successfully uninstalled numpy-2.0.0
09:46:03 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.7.4 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.3 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.19
09:46:03 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:46:04 Collecting omero-metadata
09:46:04 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-k11z78l5/omero-metadata_c18c11a1840d462fb78dec60c413208b
09:46:04 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-k11z78l5/omero-metadata_c18c11a1840d462fb78dec60c413208b
09:46:05 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 175523c6f28cdec8824b8b2954f4ce87ab5ac3b3
09:46:05 Installing build dependencies: started
09:46:07 Installing build dependencies: finished with status 'done'
09:46:07 Getting requirements to build wheel: started
09:46:07 Getting requirements to build wheel: finished with status 'done'
09:46:07 Preparing metadata (pyproject.toml): started
09:46:07 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:07 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.3)
09:46:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
09:46:07 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
09:46:08 Collecting pandas (from omero-metadata)
09:46:08 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
09:46:08 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19)
09:46:08 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:46:08 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:46:08 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
09:46:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
09:46:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:46:08 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
09:46:08 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
09:46:08 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
09:46:08 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
09:46:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:46:08 Collecting pytz>=2020.1 (from pandas->omero-metadata)
09:46:08 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
09:46:08 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
09:46:08 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
09:46:08 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
09:46:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
09:46:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
09:46:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.7.4)
09:46:08 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
09:46:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:46:08 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
09:46:09 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
09:46:09 Building wheels for collected packages: omero-metadata
09:46:09 Building wheel for omero-metadata (pyproject.toml): started
09:46:09 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:46:09 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39110 sha256=1f53ec556c60173a868f183c28aecb7faa517890955ee43be84ccfc80ef24f2a
09:46:09 Stored in directory: /tmp/pip-ephem-wheel-cache-wwg49hy6/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
09:46:09 Successfully built omero-metadata
09:46:09 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
09:46:14 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
09:46:14 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:46:14 Collecting omero-cli-render
09:46:14 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-01luh51o/omero-cli-render_a57a3e5dda444e24afed78f6fcbc3445
09:46:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-01luh51o/omero-cli-render_a57a3e5dda444e24afed78f6fcbc3445
09:46:15 Running command git checkout -b merge_ci --track origin/merge_ci
09:46:16 Switched to a new branch 'merge_ci'
09:46:16 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:46:16 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 00067afe84efaa39a6f0718d8bf3de9e43f1d5af
09:46:16 Installing build dependencies: started
09:46:17 Installing build dependencies: finished with status 'done'
09:46:17 Getting requirements to build wheel: started
09:46:17 Getting requirements to build wheel: finished with status 'done'
09:46:17 Preparing metadata (pyproject.toml): started
09:46:17 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:17 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
09:46:17 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.3)
09:46:17 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19)
09:46:17 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:46:17 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
09:46:17 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
09:46:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
09:46:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:46:17 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
09:46:17 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
09:46:17 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
09:46:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
09:46:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.7.4)
09:46:17 Building wheels for collected packages: omero-cli-render
09:46:17 Building wheel for omero-cli-render (pyproject.toml): started
09:46:18 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:46:18 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18031 sha256=993302877d05cb23c3ae972bf9eaf694b83134b22e9b53b70fb8dae803c21a3c
09:46:18 Stored in directory: /tmp/pip-ephem-wheel-cache-2zo7mds4/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
09:46:18 Successfully built omero-cli-render
09:46:18 Installing collected packages: omero-cli-render
09:46:18 Successfully installed omero-cli-render-0.8.1.dev0
09:46:18 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:46:18 Collecting omero-cli-duplicate
09:46:18 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-2zicwruv/omero-cli-duplicate_b58499fa00ac4176aa15dde620ee3eb0
09:46:18 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-2zicwruv/omero-cli-duplicate_b58499fa00ac4176aa15dde620ee3eb0
09:46:19 Running command git checkout -b merge_ci --track origin/merge_ci
09:46:19 Switched to a new branch 'merge_ci'
09:46:19 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:46:19 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c89b10f9975b57deed2cb778ae000e39a4768326
09:46:19 Installing build dependencies: started
09:46:21 Installing build dependencies: finished with status 'done'
09:46:21 Getting requirements to build wheel: started
09:46:21 Getting requirements to build wheel: finished with status 'done'
09:46:21 Preparing metadata (pyproject.toml): started
09:46:21 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:21 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.3)
09:46:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19)
09:46:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:46:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:46:21 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
09:46:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
09:46:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
09:46:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:46:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
09:46:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
09:46:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
09:46:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
09:46:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.7.4)
09:46:21 Building wheels for collected packages: omero-cli-duplicate
09:46:21 Building wheel for omero-cli-duplicate (pyproject.toml): started
09:46:21 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:46:21 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=411f67e46d194d4f263cfea420a88b087fd13aa28b0205cdbb9e6e4bab4dbec3
09:46:21 Stored in directory: /tmp/pip-ephem-wheel-cache-czbwy_6w/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
09:46:21 Successfully built omero-cli-duplicate
09:46:22 Installing collected packages: omero-cli-duplicate
09:46:22 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:46:22 + pip install omero-certificates
09:46:22 Collecting omero-certificates
09:46:22 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
09:46:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.3)
09:46:22 Collecting distro==1.8.0 (from omero-certificates)
09:46:22 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
09:46:22 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19)
09:46:22 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
09:46:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
09:46:22 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
09:46:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
09:46:22 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
09:46:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
09:46:22 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
09:46:22 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
09:46:22 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
09:46:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
09:46:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.7.4)
09:46:22 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
09:46:22 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
09:46:22 Installing collected packages: distro, omero-certificates
09:46:22 Successfully installed distro-1.8.0 omero-certificates-0.3.2
09:46:23 + for x in *.tar.gz
09:46:23 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
09:46:23 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
09:46:23 Installing build dependencies: started
09:46:24 Installing build dependencies: finished with status 'done'
09:46:24 Getting requirements to build wheel: started
09:46:24 Getting requirements to build wheel: finished with status 'done'
09:46:24 Preparing metadata (pyproject.toml): started
09:46:25 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:25 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.3)
09:46:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19)
09:46:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
09:46:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
09:46:25 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
09:46:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
09:46:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1)
09:46:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
09:46:25 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
09:46:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
09:46:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
09:46:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7)
09:46:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.7.4)
09:46:25 Building wheels for collected packages: omero-dropbox
09:46:25 Building wheel for omero-dropbox (pyproject.toml): started
09:46:25 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
09:46:25 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49055 sha256=af045e8d16b9d29e4a12fc70b2e59d51898f1c8f8f405a0f60a03e91bc4ee2bb
09:46:25 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
09:46:25 Successfully built omero-dropbox
09:46:25 Installing collected packages: omero-dropbox
09:46:25 Successfully installed omero-dropbox-5.7.1.dev0
09:46:25 + for x in *.tar.gz
09:46:25 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
09:46:26 Processing ./omero_marshal-0.9.1.dev0.tar.gz
09:46:26 Installing build dependencies: started
09:46:27 Installing build dependencies: finished with status 'done'
09:46:27 Getting requirements to build wheel: started
09:46:27 Getting requirements to build wheel: finished with status 'done'
09:46:27 Preparing metadata (pyproject.toml): started
09:46:27 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:27 Building wheels for collected packages: omero_marshal
09:46:27 Building wheel for omero_marshal (pyproject.toml): started
09:46:28 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
09:46:28 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=df13bb4bdf26bedb07a028e0cb6853fa439e1ae4b484632e280ea5f88c4b27e1
09:46:28 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
09:46:28 Successfully built omero_marshal
09:46:28 Installing collected packages: omero_marshal
09:46:28 Successfully installed omero_marshal-0.9.1.dev0
09:46:28 + for x in *.tar.gz
09:46:28 + pip install -U omero_py-5.19.4.dev0.tar.gz
09:46:28 Processing ./omero_py-5.19.4.dev0.tar.gz
09:46:29 Installing build dependencies: started
09:46:30 Installing build dependencies: finished with status 'done'
09:46:30 Getting requirements to build wheel: started
09:46:30 Getting requirements to build wheel: finished with status 'done'
09:46:30 Preparing metadata (pyproject.toml): started
09:46:31 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.19)
09:46:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.4.4)
09:46:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.0.0)
09:46:31 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.4)
09:46:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (10.4.0)
09:46:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (6.0.1)
09:46:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (3.6.5)
09:46:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.32.3)
09:46:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.10.1)
09:46:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.3.2)
09:46:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.7)
09:46:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (2024.7.4)
09:46:31 Building wheels for collected packages: omero-py
09:46:31 Building wheel for omero-py (pyproject.toml): started
09:46:32 Building wheel for omero-py (pyproject.toml): finished with status 'done'
09:46:32 Created wheel for omero-py: filename=omero_py-5.19.4.dev0-py3-none-any.whl size=2782904 sha256=0526e51c3ec47b02fdf1e54eafbe2e980b80d9f88a155f65d51bc8cc9761ebc7
09:46:32 Stored in directory: /home/omero/.cache/pip/wheels/f4/9e/a5/caf57b3ab5be95b791b32331e833a135756ff787a5d5189ab9
09:46:32 Successfully built omero-py
09:46:32 Installing collected packages: omero-py
09:46:32 Attempting uninstall: omero-py
09:46:32 Found existing installation: omero-py 5.19.3
09:46:32 Uninstalling omero-py-5.19.3:
09:46:32 Successfully uninstalled omero-py-5.19.3
09:46:34 Successfully installed omero-py-5.19.4.dev0
09:46:34 + for x in *.tar.gz
09:46:34 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
09:46:35 Processing ./omero_scripts-5.8.3.dev0.tar.gz
09:46:35 Installing build dependencies: started
09:46:36 Installing build dependencies: finished with status 'done'
09:46:36 Getting requirements to build wheel: started
09:46:36 Getting requirements to build wheel: finished with status 'done'
09:46:36 Preparing metadata (pyproject.toml): started
09:46:36 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:36 Building wheels for collected packages: omero-scripts
09:46:36 Building wheel for omero-scripts (pyproject.toml): started
09:46:37 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
09:46:37 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116554 sha256=6a00dcd8a5676e1b071386e8438fea23cf0aa5038aa3d3ad07a52014327206b5
09:46:37 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
09:46:37 Successfully built omero-scripts
09:46:37 Installing collected packages: omero-scripts
09:46:37 Successfully installed omero-scripts-5.8.3.dev0
09:46:37 + for x in *.tar.gz
09:46:37 + pip install -U omero_web-5.26.1.dev0.tar.gz
09:46:37 Processing ./omero_web-5.26.1.dev0.tar.gz
09:46:38 Installing build dependencies: started
09:46:39 Installing build dependencies: finished with status 'done'
09:46:39 Getting requirements to build wheel: started
09:46:39 Getting requirements to build wheel: finished with status 'done'
09:46:39 Preparing metadata (pyproject.toml): started
09:46:40 Preparing metadata (pyproject.toml): finished with status 'done'
09:46:40 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.4.dev0)
09:46:40 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0)
09:46:40 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
09:46:40 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0)
09:46:40 Using cached Django-4.2.14-py3-none-any.whl.metadata (4.1 kB)
09:46:40 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0)
09:46:40 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
09:46:40 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0)
09:46:41 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
09:46:41 Collecting django-csp (from omero-web==5.26.1.dev0)
09:46:41 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
09:46:41 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0)
09:46:41 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
09:46:41 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0)
09:46:41 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
09:46:41 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0)
09:46:41 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.4.0)
09:46:41 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1)
09:46:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.1)
09:46:41 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1)
09:46:41 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
09:46:41 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
09:46:41 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
09:46:41 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
09:46:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19)
09:46:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4)
09:46:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0)
09:46:41 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4)
09:46:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1)
09:46:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5)
09:46:41 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3)
09:46:41 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
09:46:41 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
09:46:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2)
09:46:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7)
09:46:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.7.4)
09:46:41 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
09:46:42 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
09:46:42 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
09:46:42 Using cached Django-4.2.14-py3-none-any.whl (8.0 MB)
09:46:42 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
09:46:42 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
09:46:42 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
09:46:42 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
09:46:42 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
09:46:42 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
09:46:42 Building wheels for collected packages: omero-web
09:46:42 Building wheel for omero-web (pyproject.toml): started
09:46:43 Building wheel for omero-web (pyproject.toml): finished with status 'done'
09:46:43 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2765252 sha256=0d067c1d5b009da1a0bd7e7feccd7b5c2e44b6313483d47a31b323a779a48662
09:46:43 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453
09:46:43 Successfully built omero-web
09:46:43 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
09:46:46 Successfully installed Django-4.2.14 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
09:46:46 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:46:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:46:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:46:47 --2024-07-16 09:46:47-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:46:47 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.111.133, 185.199.110.133, ...
09:46:47 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
09:46:48 HTTP request sent, awaiting response... 200 OK
09:46:48 Length: 95703 (93K) [text/plain]
09:46:48 Saving to: ‘Figure_To_Pdf.py’
09:46:48
09:46:48 0K .......... .......... .......... .......... .......... 53% 3.13M 0s
09:46:48 50K .......... .......... .......... .......... ... 100% 5.32M=0.02s
09:46:48
09:46:48 2024-07-16 09:46:48 (3.87 MB/s) - ‘Figure_To_Pdf.py’ saved [95703/95703]
09:46:48
09:46:48 + chmod 755 Figure_To_Pdf.py
09:46:48 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
09:46:48 + omero config set omero.db.name OMERO-server
09:46:49 + omero config set omero.db.host pg
09:46:50 + omero config set omero.db.user postgres
09:46:52 + omero config set omero.data.dir /home/omero/omero-server-data
09:46:53 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
09:46:54 + omero config set omero.db.poolsize 25
09:46:56 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
09:46:57 + omero config set omero.security.trustStorePassword changeit
09:46:58 + omero config set omero.mail.config true
09:47:00 + omero config set omero.mail.from qa@openmicroscopy.org.uk
09:47:01 + omero config set omero.mail.host smtp.dundee.ac.uk
09:47:02 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
09:47:03 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
09:47:05 + omero certificates
09:47:06 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
09:47:06 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
09:47:07 + '[' false = true ']'
09:47:07 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
09:47:07 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
09:47:07 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
09:47:07 2024-07-16 09:47:07,276 [ omego.db] DEBUG dbcommand => upgrade
09:47:07 2024-07-16 09:47:07,276 [ omego.db] DEBUG dbhost => localhost
09:47:07 2024-07-16 09:47:07,276 [ omego.db] DEBUG dbname => OMERO-server
09:47:07 2024-07-16 09:47:07,276 [ omego.db] DEBUG dbpass => omero
09:47:07 2024-07-16 09:47:07,276 [ omego.db] DEBUG dbuser => omero
09:47:07 2024-07-16 09:47:07,276 [ omego.db] DEBUG rootpass => omero
09:47:07 2024-07-16 09:47:07,276 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
09:47:07 2024-07-16 09:47:07,276 [omego.extern] INFO Executing : omero version
09:47:08 OMERO.py version:
09:47:08 OMERO.server version:
09:47:08 5.6.3-481-b86becb6dd-ice36
09:47:08 5.19.4.dev0
09:47:08 2024-07-16 09:47:08,648 [omego.extern] INFO Completed [1.371 s]
09:47:08 2024-07-16 09:47:08,648 [omego.extern] DEBUG Using omero CLI from omero
09:47:08 2024-07-16 09:47:08,648 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
09:47:08 2024-07-16 09:47:08,648 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:47:08 2024-07-16 09:47:08,648 [omego.extern] INFO Executing : omero config get --show-password
09:47:09 2024-07-16 09:47:09,940 [omego.extern] INFO Completed [1.292 s]
09:47:09 2024-07-16 09:47:09,941 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:47:09 2024-07-16 09:47:09,941 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
09:47:10 2024-07-16 09:47:10,271 [omego.extern] INFO Completed [0.330 s]
09:47:10 2024-07-16 09:47:10,271 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
09:47:10 2024-07-16 09:47:10,271 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
09:47:10
09:47:10 2024-07-16 09:47:10,271 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:47:10 2024-07-16 09:47:10,271 [omego.extern] INFO Executing : omero config get --show-password
09:47:11 2024-07-16 09:47:11,556 [omego.extern] INFO Completed [1.284 s]
09:47:11 2024-07-16 09:47:11,556 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:47:11 2024-07-16 09:47:11,556 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
09:47:11 2024-07-16 09:47:11,961 [omego.extern] INFO Completed [0.405 s]
09:47:11 2024-07-16 09:47:11,961 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.4") at port "5432".\n'
09:47:11 2024-07-16 09:47:11,961 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:47:11 2024-07-16 09:47:11,961 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:47:11 2024-07-16 09:47:11,961 [omego.extern] INFO Executing : omero config get --show-password
09:47:13 2024-07-16 09:47:13,241 [omego.extern] INFO Completed [1.279 s]
09:47:13 2024-07-16 09:47:13,241 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:47:13 2024-07-16 09:47:13,241 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:47:13 2024-07-16 09:47:13,928 [omego.extern] INFO Completed [0.687 s]
09:47:13 2024-07-16 09:47:13,928 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
09:47:13 2024-07-16 09:47:13,928 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
09:47:13 2024-07-16 09:47:13,930 [ omego.db] INFO Database is already at OMERO5.4__0
09:47:13 + export LANG=en_US.UTF-8
09:47:13 + LANG=en_US.UTF-8
09:47:13 + export LANGUAGE=en_US:en
09:47:13 + LANGUAGE=en_US:en
09:47:13 + export LC_ALL=en_US.UTF-8
09:47:13 + LC_ALL=en_US.UTF-8
09:47:13 + BUILD_ID=DONT_KILL_ME
09:47:13 + omero admin start
09:47:23 No descriptor given. Using etc/grid/default.xml
09:47:33 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
09:47:33 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
09:47:33 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
09:47:33 Waiting on startup. Use CTRL-C to exit
09:47:33 + omero admin waitup
09:47:34 Waiting on startup. Use CTRL-C to exit
09:47:34 + omero admin diagnostics
09:47:36
09:47:36 ================================================================================
09:47:36 OMERO Diagnostics (admin)
09:47:36 ================================================================================
09:47:36
09:47:36 Commands: java -version 11.0.22 (/usr/bin/java)
09:47:36 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
09:47:36 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
09:47:36 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
09:47:36 Commands: psql --version 16.2 (/usr/bin/psql)
09:47:36 Commands: openssl version 3.0.71 (/usr/bin/openssl)
09:47:36
09:47:36 Component: OMERO.py 5.19.4.dev0
09:47:36 Component: OMERO.server 5.6.3-481-b86becb6dd-ice36
09:47:36
09:47:36 Server: icegridnode running
09:47:36 Server: Blitz-0 active (pid = 2609, enabled)
09:47:36 Server: Indexer-0 activating (enabled)
09:47:36 Server: OMERO.Glacier2 active (pid = 2640, enabled)
09:47:36 Server: OMERO.IceStorm active (pid = 2661, enabled)
09:47:36 Server: Processor-0 activating (enabled)
09:47:36 Server: Tables-0 activating (enabled)
09:47:36
09:47:36 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
09:47:36 Log files: Blitz-0.log 12.8 KB errors=0 warnings=1
09:47:36 Log files: DropBox.log n/a
09:47:36 Log files: FileServer.log n/a
09:47:36 Log files: Indexer-0.log 358 B
09:47:36 Log files: MonitorServer.log n/a
09:47:36 Log files: Processor-0.log 281 B
09:47:36 Log files: Tables-0.log 281 B
09:47:36 Log files: TestDropBox.log n/a
09:47:36 Log files: master.err 180 B
09:47:36 Log files: master.out 30.1 KB
09:47:36 Log files: Total size 0.04 MB
09:47:36
09:47:36
09:47:36 Environment:OMERO_HOME=(unset)
09:47:36 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:47:36 Environment:OMERO_NODE=(unset)
09:47:36 Environment:OMERO_MASTER=(unset)
09:47:36 Environment:OMERO_USERDIR=(unset)
09:47:36 Environment:OMERO_TMPDIR=(unset)
09:47:36 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:47:36 Environment:PYTHONPATH=(unset)
09:47:36 Environment:ICE_HOME=/opt/ice-3.6.5
09:47:36 Environment:LD_LIBRARY_PATH=(unset)
09:47:36 Environment:DYLD_LIBRARY_PATH=(unset)
09:47:36
09:47:36 OMERO SSL port:4064
09:47:36 OMERO TCP port:4063
09:47:36 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
09:47:36 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
09:47:36
09:47:36 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:47:36 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:47:36 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:47:36 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:47:36
09:47:36 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 16 July 2024 46743f5225254651b3de00e141564374defef487
09:47:36 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 16 July 2024 46743f5225254651b3de00e141564374defef487
09:47:36 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 16 July 2024 46743f5225254651b3de00e141564374defef487
09:47:36 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f
09:47:36 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f
09:47:36 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f
09:47:36 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f
09:47:36 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f
09:47:36 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 16 July 2024 637f62b122fb0d2f51b0f44f6b3d27372425428f
09:47:36 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT
09:47:36 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT
09:47:36 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT
09:47:36 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT
09:47:36 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT
09:47:36 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT
09:47:36 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT
09:47:36 + deactivate
09:47:36 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:47:36 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:47:36 + export PATH
09:47:36 + unset _OLD_VIRTUAL_PATH
09:47:36 + '[' -n '' ']'
09:47:36 + '[' -n /bin/bash -o -n '' ']'
09:47:36 + hash -r
09:47:36 + '[' -n '' ']'
09:47:36 + unset VIRTUAL_ENV
09:47:36 + '[' '!' '' = nondestructive ']'
09:47:36 + unset -f deactivate
09:47:36 Finished: SUCCESS
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