16:26:07 Started by upstream project "Trigger" build number 217
16:26:07 originally caused by:
16:26:07 Started by user devspace
16:26:07 Running as SYSTEM
16:26:07 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
16:26:08 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7104131415631084709.sh
16:26:08 + source /home/settings.env
16:26:08 ++ OMERO_DB_HOST=pg
16:26:08 ++ OMERO_DB_USER=postgres
16:26:08 ++ OMERO_DB_PASS=
16:26:08 ++ OMERO_ROOT_PASS=omero
16:26:08 ++ OMERO_DATA_DIR=/OMERO
16:26:08 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:26:08 + OMERO_DB_NAME=OMERO-server
16:26:08 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
16:26:08 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:26:08 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:26:08 + OMERO_DATA_DIR=/home/omero/omero-server-data
16:26:08 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
16:26:08 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
16:26:08 ++ deactivate nondestructive
16:26:08 ++ '[' -n '' ']'
16:26:08 ++ '[' -n '' ']'
16:26:08 ++ '[' -n /bin/bash -o -n '' ']'
16:26:08 ++ hash -r
16:26:08 ++ '[' -n '' ']'
16:26:08 ++ unset VIRTUAL_ENV
16:26:08 ++ '[' '!' nondestructive = nondestructive ']'
16:26:08 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
16:26:08 ++ export VIRTUAL_ENV
16:26:08 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:26:08 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:26:08 ++ export PATH
16:26:08 ++ '[' -n '' ']'
16:26:08 ++ '[' -z '' ']'
16:26:08 ++ _OLD_VIRTUAL_PS1=
16:26:08 ++ PS1='(.venv3) '
16:26:08 ++ export PS1
16:26:08 ++ '[' -n /bin/bash -o -n '' ']'
16:26:08 ++ hash -r
16:26:08 + omero admin stop
16:26:23 Server not running
16:26:23 + echo not running
16:26:23 not running
16:26:23 + sleep 5
16:26:28 + deactivate
16:26:28 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
16:26:28 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:26:28 + export PATH
16:26:28 + unset _OLD_VIRTUAL_PATH
16:26:28 + '[' -n '' ']'
16:26:28 + '[' -n /bin/bash -o -n '' ']'
16:26:28 + hash -r
16:26:28 + '[' -n '' ']'
16:26:28 + unset VIRTUAL_ENV
16:26:28 + '[' '!' '' = nondestructive ']'
16:26:28 + unset -f deactivate
16:26:28 + rm -rf /home/omero/workspace/OMERO-server/.venv3
16:26:29 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
16:26:34 + '[' false = true ']'
16:26:34 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
16:26:34 Skipping PURGE_DATA:CleanDbAndRepo
16:26:34 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
16:26:38 Copied 1 artifact from "OMERO-build" build number 182
16:26:38 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 179
16:26:38 Copied 2 artifacts from "OMERO-build-build" build number 187
16:26:38 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16733049762664647673.sh
16:26:38 + source /home/settings.env
16:26:38 ++ OMERO_DB_HOST=pg
16:26:38 ++ OMERO_DB_USER=postgres
16:26:38 ++ OMERO_DB_PASS=
16:26:38 ++ OMERO_ROOT_PASS=omero
16:26:38 ++ OMERO_DATA_DIR=/OMERO
16:26:38 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:26:38 + OMERO_DB_NAME=OMERO-server
16:26:38 + OMERO_DATA_DIR=/home/omero/omero-server-data
16:26:38 + mkdir -p /home/omero/omero-server-data
16:26:38 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
16:26:38 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:26:38 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:26:38 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
16:26:38 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
16:26:38 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
16:26:38 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
16:26:38 ++ ls OMERO.server-5.6.3-510-9780907658-ice36.zip
16:26:38 + ZIP=OMERO.server-5.6.3-510-9780907658-ice36.zip
16:26:38 + '[' '!' -z '' ']'
16:26:38 + DIST=OMERO.server-5.6.3-510-9780907658-ice36
16:26:38 + unzip OMERO.server-5.6.3-510-9780907658-ice36.zip
16:26:38 Archive: OMERO.server-5.6.3-510-9780907658-ice36.zip
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/blitz/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/grid/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/profiles/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/error/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/janelia/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/ncsa_paledit/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/luts/wcif/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/analysis_scripts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/annotation_scripts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/export_scripts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/figure_scripts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/import_scripts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/scripts/omero/util_scripts/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/share/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__1/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__10/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__11/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__2/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__3/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__4/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__5/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__6/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__7/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__8/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__9/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__4/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__5/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__6/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__7/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.1__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/t/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.3__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.4__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__1/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__2/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__3/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/
16:26:38 creating: OMERO.server-5.6.3-510-9780907658-ice36/var/
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/LICENSE.txt
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/backup.cfg
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/blitz/mail-senders.example
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/blitz/mail-server.example
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/build.properties
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/env.bat
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/env.sh
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/hibernate.properties
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/ice.config
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback-cli.xml
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback-indexing-cli.xml
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback-indexing.xml
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/logback.xml
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/mime.types
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/node1.cfg
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/node2.cfg
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/omero.properties
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/profiles/psql
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/rollover.cfg
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/Windows.cfg
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/error/maintainance.html
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/README
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/default.xml
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/templates.xml
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/grid/windefault.xml
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/ice.config
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/internal.cfg
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/master.cfg
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/templates/robot.template
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/etc/testdropbox.config
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/history.rst
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/OMEZarrReader.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/activation.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aggdesigner-algorithm.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aircompressor.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/annotations.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/antlr.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aopalliance.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/avatica-core.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/avatica-metrics.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aws-java-sdk-core.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aws-java-sdk-kms.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/aws-java-sdk-s3.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/base.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-all.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-anim.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-awt-util.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-bridge.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-codec.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-constants.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-css.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-dom.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-ext.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-extension.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-gui-util.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-gvt.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-i18n.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-parser.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-rasterizer-ext.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-rasterizer.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-script.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-slideshow.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-squiggle-ext.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-squiggle.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svg-dom.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svgbrowser.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svggen.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svgpp.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-svgrasterizer.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-swing.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-transcoder.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-ttf2svg.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-util.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/batik-xml.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/btm.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/bufr.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/c3p0.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/calcite-core.jar
16:26:38 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/calcite-linq4j.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/cdm-core.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/checker-qual.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-beanutils.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-codec.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-collections.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-collections4.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-compiler.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-dbcp2.jar
16:26:39 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/client/commons-io.jar
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16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/specification.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-aop.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-beans.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-context-support.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-context.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-core.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-expression.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-jdbc.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-jms.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-ldap-core.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-messaging.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-orm.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-security-core.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-security-ldap.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/spring-tx.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/sqlite-jdbc.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/subethasmtp.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/turbojpeg.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/udunits.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xalan.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xercesImpl.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xml-apis-ext.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xml-apis.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xmlgraphics-commons.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xmpcore.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/lib/server/xpp3.jar
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/README
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/agpl.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/antlr.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/apache-v1.1.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/apache-v2.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/asm.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/bouncy_castle_license.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/bsd.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/cddl-v1.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/cpl-v10.html
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/crystalclear.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/django.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/dom4j.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/epl-v1.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/fbsd.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/freemarker.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/gpl-v2.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/gpl.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/gtest.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/iconsweets_license.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jamon.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jmock.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jquery.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/jtidy.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-3.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-v2.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-v2.1.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl-v3.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/lgpl.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/matplotlib.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/mit.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/mpl-v1_0.htm
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/npl-1_1.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/path.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/pil.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/postgresql.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/psf-v2.0.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/psf-v2.5.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/scons.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/slf4j.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/tablelayout.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/which.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/zlib-libpng.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/share/licenses/zpl-v2.1.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/README.txt
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/Makefile
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/current.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/misc/enums.py
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/psql-header.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/schema.sql
16:26:41 inflating: OMERO.server-5.6.3-510-9780907658-ice36/sql/psql/OMERO5.4__0/views.sql
16:26:41 + rm -f OMERO.server-5.6.3-510-9780907658-ice36.zip
16:26:41 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-510-9780907658-ice36 /home/omero/workspace/OMERO-server/OMERO.server
16:26:41 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
16:26:41 ++ deactivate nondestructive
16:26:41 ++ '[' -n '' ']'
16:26:41 ++ '[' -n '' ']'
16:26:41 ++ '[' -n /bin/bash -o -n '' ']'
16:26:41 ++ hash -r
16:26:41 ++ '[' -n '' ']'
16:26:41 ++ unset VIRTUAL_ENV
16:26:41 ++ '[' '!' nondestructive = nondestructive ']'
16:26:41 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
16:26:41 ++ export VIRTUAL_ENV
16:26:41 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:26:41 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:26:41 ++ export PATH
16:26:41 ++ '[' -n '' ']'
16:26:41 ++ '[' -z '' ']'
16:26:41 ++ _OLD_VIRTUAL_PS1=
16:26:41 ++ PS1='(.venv3) '
16:26:41 ++ export PS1
16:26:41 ++ '[' -n /bin/bash -o -n '' ']'
16:26:41 ++ hash -r
16:26:41 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
16:26:42 Collecting zeroc-ice==3.6.5
16:26:42 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
16:26:44 Installing collected packages: zeroc-ice
16:26:45 Successfully installed zeroc-ice-3.6.5
16:26:45 + pip install -U pip future
16:26:45 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
16:26:46 Collecting pip
16:26:46 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
16:26:46 Collecting future
16:26:46 Using cached future-1.0.0-py3-none-any.whl (491 kB)
16:26:46 Installing collected packages: pip, future
16:26:46 Attempting uninstall: pip
16:26:46 Found existing installation: pip 21.2.3
16:26:47 Uninstalling pip-21.2.3:
16:26:47 Successfully uninstalled pip-21.2.3
16:26:48 Successfully installed future-1.0.0 pip-24.2
16:26:48 + pip install markdown
16:26:49 Collecting markdown
16:26:49 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
16:26:49 Collecting importlib-metadata>=4.4 (from markdown)
16:26:49 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
16:26:49 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
16:26:49 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
16:26:49 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
16:26:49 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
16:26:49 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
16:26:49 Installing collected packages: zipp, importlib-metadata, markdown
16:26:49 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
16:26:50 + pip install reportlab
16:26:50 Collecting reportlab
16:26:50 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
16:26:51 Collecting pillow>=9.0.0 (from reportlab)
16:26:51 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
16:26:51 Collecting chardet (from reportlab)
16:26:51 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
16:26:51 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
16:26:51 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
16:26:51 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
16:26:51 Installing collected packages: pillow, chardet, reportlab
16:26:52 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
16:26:53 + pip install omego
16:26:53 Collecting omego
16:26:53 Using cached omego-0.7.0-py3-none-any.whl
16:26:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
16:26:53 Collecting yaclifw>=0.1.1 (from omego)
16:26:53 Using cached yaclifw-0.2.0-py3-none-any.whl
16:26:53 Collecting six (from yaclifw>=0.1.1->omego)
16:26:53 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
16:26:53 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
16:26:53 Installing collected packages: six, yaclifw, omego
16:26:53 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
16:26:54 + pip install tables
16:26:54 Collecting tables
16:26:54 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
16:26:54 Collecting numpy>=1.19.0 (from tables)
16:26:55 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
16:26:55 Collecting numexpr>=2.6.2 (from tables)
16:26:55 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
16:26:55 Collecting packaging (from tables)
16:26:55 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
16:26:55 Collecting py-cpuinfo (from tables)
16:26:55 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
16:26:55 Collecting blosc2>=2.3.0 (from tables)
16:26:55 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
16:26:55 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
16:26:55 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
16:26:55 Collecting msgpack (from blosc2>=2.3.0->tables)
16:26:55 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
16:26:55 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
16:26:55 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
16:26:55 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
16:26:55 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
16:26:56 Using cached packaging-24.1-py3-none-any.whl (53 kB)
16:26:56 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
16:26:56 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
16:26:56 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
16:26:56 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
16:27:00 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
16:27:00 + pip install jinja2
16:27:00 Collecting jinja2
16:27:00 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
16:27:00 Collecting MarkupSafe>=2.0 (from jinja2)
16:27:00 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
16:27:00 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
16:27:00 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
16:27:01 Installing collected packages: MarkupSafe, jinja2
16:27:01 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
16:27:01 + pip install omero-py
16:27:01 Collecting omero-py
16:27:01 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
16:27:01 Collecting urllib3<2 (from omero-py)
16:27:01 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
16:27:02 Collecting appdirs (from omero-py)
16:27:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
16:27:02 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
16:27:02 Collecting numpy<2 (from omero-py)
16:27:02 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
16:27:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
16:27:03 Collecting PyYAML (from omero-py)
16:27:03 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
16:27:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
16:27:03 Collecting requests (from omero-py)
16:27:03 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
16:27:03 Collecting portalocker (from omero-py)
16:27:03 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
16:27:03 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
16:27:03 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
16:27:04 Collecting idna<4,>=2.5 (from requests->omero-py)
16:27:04 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
16:27:05 Collecting certifi>=2017.4.17 (from requests->omero-py)
16:27:05 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
16:27:05 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
16:27:05 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
16:27:05 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
16:27:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
16:27:05 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
16:27:05 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
16:27:05 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
16:27:05 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
16:27:05 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
16:27:05 Using cached idna-3.10-py3-none-any.whl (70 kB)
16:27:06 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
16:27:06 Attempting uninstall: numpy
16:27:06 Found existing installation: numpy 2.0.2
16:27:06 Uninstalling numpy-2.0.2:
16:27:06 Successfully uninstalled numpy-2.0.2
16:27:12 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
16:27:12 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
16:27:13 Collecting omero-metadata
16:27:13 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-39q9dcjd/omero-metadata_05f583d8487444879920a62c27819864
16:27:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-39q9dcjd/omero-metadata_05f583d8487444879920a62c27819864
16:27:15 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit a0b418463838318f84d872eea8fdf09e25137b99
16:27:15 Installing build dependencies: started
16:27:18 Installing build dependencies: finished with status 'done'
16:27:18 Getting requirements to build wheel: started
16:27:18 Getting requirements to build wheel: finished with status 'done'
16:27:18 Preparing metadata (pyproject.toml): started
16:27:19 Preparing metadata (pyproject.toml): finished with status 'done'
16:27:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
16:27:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
16:27:19 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
16:27:19 Collecting pandas (from omero-metadata)
16:27:19 Downloading pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
16:27:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
16:27:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
16:27:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
16:27:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
16:27:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
16:27:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
16:27:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
16:27:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
16:27:19 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
16:27:19 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
16:27:19 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
16:27:19 Collecting pytz>=2020.1 (from pandas->omero-metadata)
16:27:19 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
16:27:20 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
16:27:20 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
16:27:20 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
16:27:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
16:27:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
16:27:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
16:27:20 Downloading pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
16:27:21 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 7.7 MB/s eta 0:00:00
16:27:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
16:27:22 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
16:27:22 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
16:27:22 Building wheels for collected packages: omero-metadata
16:27:22 Building wheel for omero-metadata (pyproject.toml): started
16:27:22 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
16:27:22 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=41c9215b3af63eaa47bcdb9bba06c6f26b26d4c2a39e1df6edb863985f5e3f94
16:27:22 Stored in directory: /tmp/pip-ephem-wheel-cache-44fg81p9/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
16:27:22 Successfully built omero-metadata
16:27:23 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
16:27:29 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.1
16:27:29 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
16:27:30 Collecting omero-cli-render
16:27:30 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-deo2yuj5/omero-cli-render_82993c46424a4e8d84438e560c49c8b4
16:27:30 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-deo2yuj5/omero-cli-render_82993c46424a4e8d84438e560c49c8b4
16:27:31 Running command git checkout -b merge_ci --track origin/merge_ci
16:27:31 Switched to a new branch 'merge_ci'
16:27:31 branch 'merge_ci' set up to track 'origin/merge_ci'.
16:27:31 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 755d00daa6ebb52e35d8803fcc62ada23772b373
16:27:31 Installing build dependencies: started
16:27:34 Installing build dependencies: finished with status 'done'
16:27:34 Getting requirements to build wheel: started
16:27:34 Getting requirements to build wheel: finished with status 'done'
16:27:34 Preparing metadata (pyproject.toml): started
16:27:35 Preparing metadata (pyproject.toml): finished with status 'done'
16:27:35 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
16:27:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
16:27:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
16:27:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
16:27:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
16:27:35 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
16:27:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
16:27:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
16:27:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
16:27:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
16:27:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
16:27:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
16:27:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
16:27:35 Building wheels for collected packages: omero-cli-render
16:27:35 Building wheel for omero-cli-render (pyproject.toml): started
16:27:35 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
16:27:35 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=16ffbf5c81f2fd719dc9ab3489a8bdb5fbe80e540c27ed9ce195eaa6f2ddb317
16:27:35 Stored in directory: /tmp/pip-ephem-wheel-cache-j0t81rw5/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
16:27:35 Successfully built omero-cli-render
16:27:35 Installing collected packages: omero-cli-render
16:27:35 Successfully installed omero-cli-render-0.8.2.dev0
16:27:36 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
16:27:36 Collecting omero-cli-duplicate
16:27:36 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-3zq4cl7z/omero-cli-duplicate_bdbe5ad98b6b42a18583e6bad9f19daf
16:27:36 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-3zq4cl7z/omero-cli-duplicate_bdbe5ad98b6b42a18583e6bad9f19daf
16:27:37 Running command git checkout -b merge_ci --track origin/merge_ci
16:27:37 Switched to a new branch 'merge_ci'
16:27:37 branch 'merge_ci' set up to track 'origin/merge_ci'.
16:27:37 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit ee98608ad9e08114957e3162de0d2b21e426b148
16:27:37 Installing build dependencies: started
16:27:40 Installing build dependencies: finished with status 'done'
16:27:40 Getting requirements to build wheel: started
16:27:40 Getting requirements to build wheel: finished with status 'done'
16:27:40 Preparing metadata (pyproject.toml): started
16:27:40 Preparing metadata (pyproject.toml): finished with status 'done'
16:27:40 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
16:27:40 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
16:27:40 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
16:27:40 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
16:27:40 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
16:27:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
16:27:40 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
16:27:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
16:27:40 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
16:27:40 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
16:27:40 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
16:27:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
16:27:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
16:27:40 Building wheels for collected packages: omero-cli-duplicate
16:27:40 Building wheel for omero-cli-duplicate (pyproject.toml): started
16:27:41 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
16:27:41 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=5a8b7b89050d1975c770b515888dda76528f8b86a9613e444428249010eae494
16:27:41 Stored in directory: /tmp/pip-ephem-wheel-cache-66rq4j9y/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
16:27:41 Successfully built omero-cli-duplicate
16:27:41 Installing collected packages: omero-cli-duplicate
16:27:41 Successfully installed omero-cli-duplicate-0.4.1.dev0
16:27:41 + pip install omero-certificates
16:27:41 Collecting omero-certificates
16:27:41 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
16:27:41 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
16:27:42 Collecting distro==1.8.0 (from omero-certificates)
16:27:42 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
16:27:42 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
16:27:42 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
16:27:42 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
16:27:42 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
16:27:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
16:27:42 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
16:27:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
16:27:42 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
16:27:42 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
16:27:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
16:27:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
16:27:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
16:27:42 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
16:27:42 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
16:27:42 Installing collected packages: distro, omero-certificates
16:27:42 Successfully installed distro-1.8.0 omero-certificates-0.3.2
16:27:42 + for x in *.tar.gz
16:27:42 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
16:27:42 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
16:27:43 Installing build dependencies: started
16:27:45 Installing build dependencies: finished with status 'done'
16:27:45 Getting requirements to build wheel: started
16:27:46 Getting requirements to build wheel: finished with status 'done'
16:27:46 Preparing metadata (pyproject.toml): started
16:27:46 Preparing metadata (pyproject.toml): finished with status 'done'
16:27:46 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
16:27:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
16:27:46 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
16:27:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
16:27:46 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
16:27:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
16:27:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
16:27:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
16:27:46 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
16:27:46 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
16:27:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
16:27:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
16:27:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
16:27:46 Building wheels for collected packages: omero-dropbox
16:27:46 Building wheel for omero-dropbox (pyproject.toml): started
16:27:47 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
16:27:47 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=015f50075fd5644cba83e07cb674295b046e32337010048e4837692527b77c5e
16:27:47 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
16:27:47 Successfully built omero-dropbox
16:27:47 Installing collected packages: omero-dropbox
16:27:47 Successfully installed omero-dropbox-5.7.1.dev0
16:27:47 + for x in *.tar.gz
16:27:47 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
16:27:48 Processing ./omero_marshal-0.9.1.dev0.tar.gz
16:27:48 Installing build dependencies: started
16:27:51 Installing build dependencies: finished with status 'done'
16:27:51 Getting requirements to build wheel: started
16:27:51 Getting requirements to build wheel: finished with status 'done'
16:27:51 Preparing metadata (pyproject.toml): started
16:27:52 Preparing metadata (pyproject.toml): finished with status 'done'
16:27:52 Building wheels for collected packages: omero_marshal
16:27:52 Building wheel for omero_marshal (pyproject.toml): started
16:27:52 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
16:27:52 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=574aa364fdb242a289eb6a3ee3d0683af0a5e4124b3dbd81b373bc0cd50748ec
16:27:52 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
16:27:52 Successfully built omero_marshal
16:27:52 Installing collected packages: omero_marshal
16:27:52 Successfully installed omero_marshal-0.9.1.dev0
16:27:53 + for x in *.tar.gz
16:27:53 + pip install -U omero_py-5.19.6.dev0.tar.gz
16:27:53 Processing ./omero_py-5.19.6.dev0.tar.gz
16:27:54 Installing build dependencies: started
16:27:57 Installing build dependencies: finished with status 'done'
16:27:57 Getting requirements to build wheel: started
16:27:57 Getting requirements to build wheel: finished with status 'done'
16:27:57 Preparing metadata (pyproject.toml): started
16:27:57 Preparing metadata (pyproject.toml): finished with status 'done'
16:27:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
16:27:57 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
16:27:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
16:27:57 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
16:27:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0)
16:27:57 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
16:27:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
16:27:57 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
16:27:57 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
16:27:57 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2)
16:27:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
16:27:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
16:27:57 Building wheels for collected packages: omero-py
16:27:57 Building wheel for omero-py (pyproject.toml): started
16:27:59 Building wheel for omero-py (pyproject.toml): finished with status 'done'
16:27:59 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783136 sha256=2b45b428c50959006cc921b175c85c2e6fbdb70a7e698eb5f00e78e4522f3e7c
16:27:59 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
16:27:59 Successfully built omero-py
16:27:59 Installing collected packages: omero-py
16:27:59 Attempting uninstall: omero-py
16:27:59 Found existing installation: omero-py 5.19.5
16:27:59 Uninstalling omero-py-5.19.5:
16:28:00 Successfully uninstalled omero-py-5.19.5
16:28:03 Successfully installed omero-py-5.19.6.dev0
16:28:03 + for x in *.tar.gz
16:28:03 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
16:28:04 Processing ./omero_scripts-5.8.4.dev0.tar.gz
16:28:04 Installing build dependencies: started
16:28:06 Installing build dependencies: finished with status 'done'
16:28:06 Getting requirements to build wheel: started
16:28:06 Getting requirements to build wheel: finished with status 'done'
16:28:06 Preparing metadata (pyproject.toml): started
16:28:06 Preparing metadata (pyproject.toml): finished with status 'done'
16:28:06 Building wheels for collected packages: omero-scripts
16:28:06 Building wheel for omero-scripts (pyproject.toml): started
16:28:07 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
16:28:07 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=9c38b08e46e25f9555a440290767c3c5bfb88669e4be001211b38932e3d1bc4a
16:28:07 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
16:28:07 Successfully built omero-scripts
16:28:07 Installing collected packages: omero-scripts
16:28:07 Successfully installed omero-scripts-5.8.4.dev0
16:28:07 + for x in *.tar.gz
16:28:07 + pip install -U omero_web-5.27.3.dev0.tar.gz
16:28:08 Processing ./omero_web-5.27.3.dev0.tar.gz
16:28:09 Installing build dependencies: started
16:28:11 Installing build dependencies: finished with status 'done'
16:28:11 Getting requirements to build wheel: started
16:28:11 Getting requirements to build wheel: finished with status 'done'
16:28:11 Preparing metadata (pyproject.toml): started
16:28:11 Preparing metadata (pyproject.toml): finished with status 'done'
16:28:11 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
16:28:12 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0)
16:28:12 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
16:28:12 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0)
16:28:12 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
16:28:12 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0)
16:28:12 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
16:28:12 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0)
16:28:12 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
16:28:12 Collecting django-csp (from omero-web==5.27.3.dev0)
16:28:12 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
16:28:12 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0)
16:28:12 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
16:28:12 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0)
16:28:12 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
16:28:13 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
16:28:13 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0)
16:28:13 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
16:28:13 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
16:28:13 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
16:28:13 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
16:28:13 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
16:28:13 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
16:28:13 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
16:28:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
16:28:13 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
16:28:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
16:28:13 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
16:28:13 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
16:28:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
16:28:13 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
16:28:13 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
16:28:13 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
16:28:13 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2)
16:28:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
16:28:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
16:28:13 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
16:28:13 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
16:28:13 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
16:28:13 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
16:28:13 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
16:28:13 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
16:28:13 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
16:28:13 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
16:28:13 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
16:28:13 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
16:28:13 Building wheels for collected packages: omero-web
16:28:13 Building wheel for omero-web (pyproject.toml): started
16:28:15 Building wheel for omero-web (pyproject.toml): finished with status 'done'
16:28:15 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766665 sha256=163ab4985585040969d7713d08163bb75033e80f76d8a784f488380e21f0142a
16:28:15 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b
16:28:15 Successfully built omero-web
16:28:15 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
16:28:19 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
16:28:20 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
16:28:20 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
16:28:20 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
16:28:20 --2024-09-20 16:28:20-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
16:28:20 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.108.133, ...
16:28:20 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
16:28:20 HTTP request sent, awaiting response... 200 OK
16:28:21 Length: 98962 (97K) [text/plain]
16:28:21 Saving to: ‘Figure_To_Pdf.py’
16:28:21
16:28:21 0K .......... .......... .......... .......... .......... 51% 2.14M 0s
16:28:21 50K .......... .......... .......... .......... ...... 100% 7.22M=0.03s
16:28:21
16:28:21 2024-09-20 16:28:21 (3.24 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962]
16:28:21
16:28:21 + chmod 755 Figure_To_Pdf.py
16:28:21 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
16:28:21 + omero config set omero.db.name OMERO-server
16:28:23 + omero config set omero.db.host pg
16:28:25 + omero config set omero.db.user postgres
16:28:28 + omero config set omero.data.dir /home/omero/omero-server-data
16:28:30 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
16:28:33 + omero config set omero.db.poolsize 25
16:28:35 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
16:28:37 + omero config set omero.security.trustStorePassword changeit
16:28:40 + omero config set omero.mail.config true
16:28:42 + omero config set omero.mail.from qa@openmicroscopy.org.uk
16:28:45 + omero config set omero.mail.host smtp.dundee.ac.uk
16:28:48 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
16:28:50 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
16:28:53 + omero certificates
16:28:55 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
16:28:55 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
16:28:56 + '[' false = true ']'
16:28:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
16:28:56 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
16:28:56 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
16:28:56 2024-09-20 16:28:56,362 [ omego.db] DEBUG dbcommand => upgrade
16:28:56 2024-09-20 16:28:56,362 [ omego.db] DEBUG dbhost => localhost
16:28:56 2024-09-20 16:28:56,362 [ omego.db] DEBUG dbname => OMERO-server
16:28:56 2024-09-20 16:28:56,362 [ omego.db] DEBUG dbpass => omero
16:28:56 2024-09-20 16:28:56,362 [ omego.db] DEBUG dbuser => omero
16:28:56 2024-09-20 16:28:56,362 [ omego.db] DEBUG rootpass => omero
16:28:56 2024-09-20 16:28:56,363 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
16:28:56 2024-09-20 16:28:56,363 [omego.extern] INFO Executing : omero version
16:28:58 OMERO.py version:
16:28:58 OMERO.server version:
16:28:58 5.6.3-510-9780907658-ice36
16:28:58 5.19.6.dev0
16:28:58 2024-09-20 16:28:58,797 [omego.extern] INFO Completed [2.434 s]
16:28:58 2024-09-20 16:28:58,797 [omego.extern] DEBUG Using omero CLI from omero
16:28:58 2024-09-20 16:28:58,797 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
16:28:58 2024-09-20 16:28:58,797 [omego.extern] INFO Running [current environment]: omero config get --show-password
16:28:58 2024-09-20 16:28:58,797 [omego.extern] INFO Executing : omero config get --show-password
16:29:00 2024-09-20 16:29:00,858 [omego.extern] INFO Completed [2.061 s]
16:29:00 2024-09-20 16:29:00,862 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
16:29:00 2024-09-20 16:29:00,865 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
16:29:01 2024-09-20 16:29:01,020 [omego.extern] INFO Completed [0.155 s]
16:29:01 2024-09-20 16:29:01,020 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
16:29:01 2024-09-20 16:29:01,021 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
16:29:01
16:29:01 2024-09-20 16:29:01,021 [omego.extern] INFO Running [current environment]: omero config get --show-password
16:29:01 2024-09-20 16:29:01,021 [omego.extern] INFO Executing : omero config get --show-password
16:29:02 2024-09-20 16:29:02,843 [omego.extern] INFO Completed [1.822 s]
16:29:02 2024-09-20 16:29:02,843 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
16:29:02 2024-09-20 16:29:02,844 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
16:29:03 2024-09-20 16:29:03,065 [omego.extern] INFO Completed [0.221 s]
16:29:03 2024-09-20 16:29:03,065 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n'
16:29:03 2024-09-20 16:29:03,066 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
16:29:03 2024-09-20 16:29:03,066 [omego.extern] INFO Running [current environment]: omero config get --show-password
16:29:03 2024-09-20 16:29:03,066 [omego.extern] INFO Executing : omero config get --show-password
16:29:05 2024-09-20 16:29:05,456 [omego.extern] INFO Completed [2.390 s]
16:29:05 2024-09-20 16:29:05,456 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
16:29:05 2024-09-20 16:29:05,457 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
16:29:06 2024-09-20 16:29:06,129 [omego.extern] INFO Completed [0.672 s]
16:29:06 2024-09-20 16:29:06,129 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
16:29:06 2024-09-20 16:29:06,130 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
16:29:06 2024-09-20 16:29:06,133 [ omego.db] INFO Database is already at OMERO5.4__0
16:29:06 + export LANG=en_US.UTF-8
16:29:06 + LANG=en_US.UTF-8
16:29:06 + export LANGUAGE=en_US:en
16:29:06 + LANGUAGE=en_US:en
16:29:06 + export LC_ALL=en_US.UTF-8
16:29:06 + LC_ALL=en_US.UTF-8
16:29:06 + BUILD_ID=DONT_KILL_ME
16:29:06 + omero admin start
16:29:22 WARNING: lock files in /home/omero/omero-server-data
16:29:22 ----------------------------------------
16:29:22 /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock
16:29:22 ----------------------------------------
16:29:22
16:29:22 You may want to stop all server processes and remove
16:29:22 these files manually. Lock files can remain after an
16:29:22 abrupt server outage and are especially frequent on
16:29:22 remotely mounted filesystems like NFS.
16:29:22
16:29:22 No descriptor given. Using etc/grid/default.xml
16:29:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
16:29:40 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
16:29:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
16:29:40 Waiting on startup. Use CTRL-C to exit
16:29:41 + omero admin waitup
16:29:43 Waiting on startup. Use CTRL-C to exit
16:29:44 + omero admin diagnostics
16:29:46
16:29:46 ================================================================================
16:29:46 OMERO Diagnostics (admin)
16:29:46 ================================================================================
16:29:46
16:29:46 Commands: java -version 11.0.24 (/usr/bin/java)
16:29:46 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
16:29:46 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
16:29:46 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
16:29:46 Commands: psql --version 16.4 (/usr/bin/psql)
16:29:46 Commands: openssl version 3.0.71 (/usr/bin/openssl)
16:29:46
16:29:46 Component: OMERO.py 5.19.6.dev0
16:29:46 Component: OMERO.server 5.6.3-510-9780907658-ice36
16:29:46
16:29:46 Server: icegridnode running
16:29:46 Server: Blitz-0 active (pid = 2601, enabled)
16:29:46 Server: Indexer-0 active (pid = 2622, enabled)
16:29:46 Server: OMERO.Glacier2 active (pid = 2627, enabled)
16:29:46 Server: OMERO.IceStorm active (pid = 2649, enabled)
16:29:46 Server: Processor-0 activating (enabled)
16:29:46 Server: Tables-0 activating (enabled)
16:29:46
16:29:46 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
16:29:46 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
16:29:46 Log files: DropBox.log n/a
16:29:46 Log files: FileServer.log n/a
16:29:46 Log files: Indexer-0.log 2.6 KB
16:29:46 Log files: MonitorServer.log n/a
16:29:46 Log files: Processor-0.log 592 B
16:29:46 Log files: Tables-0.log 841 B
16:29:46 Log files: TestDropBox.log n/a
16:29:46 Log files: master.err 180 B
16:29:46 Log files: master.out 30.1 KB
16:29:46 Log files: Total size 0.06 MB
16:29:46
16:29:46
16:29:46 Environment:OMERO_HOME=(unset)
16:29:46 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:29:46 Environment:OMERO_NODE=(unset)
16:29:46 Environment:OMERO_MASTER=(unset)
16:29:46 Environment:OMERO_USERDIR=(unset)
16:29:46 Environment:OMERO_TMPDIR=(unset)
16:29:46 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:29:46 Environment:PYTHONPATH=(unset)
16:29:46 Environment:ICE_HOME=/opt/ice-3.6.5
16:29:46 Environment:LD_LIBRARY_PATH=(unset)
16:29:46 Environment:DYLD_LIBRARY_PATH=(unset)
16:29:46
16:29:46 OMERO SSL port:4064
16:29:46 OMERO TCP port:4063
16:29:46 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
16:29:46 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
16:29:46
16:29:46 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
16:29:46 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
16:29:46 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
16:29:46 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
16:29:46
16:29:46 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 20 September 2024 cee4b74e6be77178c6a58e7a919a580a55929f54
16:29:46 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 20 September 2024 cee4b74e6be77178c6a58e7a919a580a55929f54
16:29:46 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 20 September 2024 cee4b74e6be77178c6a58e7a919a580a55929f54
16:29:46 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
16:29:46 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
16:29:46 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
16:29:46 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
16:29:46 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
16:29:46 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 20 September 2024 7997b0b5dff32308ade69ced71eab18be1420874
16:29:46 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
16:29:46 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
16:29:46 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
16:29:46 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
16:29:46 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
16:29:46 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
16:29:46 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
16:29:47 + deactivate
16:29:47 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
16:29:47 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:29:47 + export PATH
16:29:47 + unset _OLD_VIRTUAL_PATH
16:29:47 + '[' -n '' ']'
16:29:47 + '[' -n /bin/bash -o -n '' ']'
16:29:47 + hash -r
16:29:47 + '[' -n '' ']'
16:29:47 + unset VIRTUAL_ENV
16:29:47 + '[' '!' '' = nondestructive ']'
16:29:47 + unset -f deactivate
16:29:47 Finished: SUCCESS
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