Console Output

01:11:32 Started by upstream project "Trigger" build number 221
01:11:32 originally caused by:
01:11:32  Started by timer
01:11:32 Running as SYSTEM
01:11:32 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:11:32 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9142584378445700679.sh
01:11:33 + source /home/settings.env
01:11:33 ++ OMERO_DB_HOST=pg
01:11:33 ++ OMERO_DB_USER=postgres
01:11:33 ++ OMERO_DB_PASS=
01:11:33 ++ OMERO_ROOT_PASS=omero
01:11:33 ++ OMERO_DATA_DIR=/OMERO
01:11:33 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:11:33 + OMERO_DB_NAME=OMERO-server
01:11:33 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:11:33 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:11:33 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:11:33 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:11:33 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:11:33 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:11:33 ++ deactivate nondestructive
01:11:33 ++ '[' -n '' ']'
01:11:33 ++ '[' -n '' ']'
01:11:33 ++ '[' -n /bin/bash -o -n '' ']'
01:11:33 ++ hash -r
01:11:33 ++ '[' -n '' ']'
01:11:33 ++ unset VIRTUAL_ENV
01:11:33 ++ '[' '!' nondestructive = nondestructive ']'
01:11:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:11:33 ++ export VIRTUAL_ENV
01:11:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:11:33 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:11:33 ++ export PATH
01:11:33 ++ '[' -n '' ']'
01:11:33 ++ '[' -z '' ']'
01:11:33 ++ _OLD_VIRTUAL_PS1=
01:11:33 ++ PS1='(.venv3) '
01:11:33 ++ export PS1
01:11:33 ++ '[' -n /bin/bash -o -n '' ']'
01:11:33 ++ hash -r
01:11:33 + omero admin stop
01:11:46 Waiting on shutdown. Use CTRL-C to exit
01:11:46 .+ sleep 5
01:12:01 + deactivate
01:12:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:12:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:01 + export PATH
01:12:01 + unset _OLD_VIRTUAL_PATH
01:12:01 + '[' -n '' ']'
01:12:01 + '[' -n /bin/bash -o -n '' ']'
01:12:01 + hash -r
01:12:01 + '[' -n '' ']'
01:12:01 + unset VIRTUAL_ENV
01:12:01 + '[' '!' '' = nondestructive ']'
01:12:01 + unset -f deactivate
01:12:01 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:12:02 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
01:12:05 + '[' false = true ']'
01:12:05 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:12:05 Skipping PURGE_DATA:CleanDbAndRepo
01:12:05 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:12:09 Copied 1 artifact from "OMERO-build" build number 184
01:12:09 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 181
01:12:10 Copied 2 artifacts from "OMERO-build-build" build number 189
01:12:10 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13321265526275469076.sh
01:12:10 + source /home/settings.env
01:12:10 ++ OMERO_DB_HOST=pg
01:12:10 ++ OMERO_DB_USER=postgres
01:12:10 ++ OMERO_DB_PASS=
01:12:10 ++ OMERO_ROOT_PASS=omero
01:12:10 ++ OMERO_DATA_DIR=/OMERO
01:12:10 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:12:10 + OMERO_DB_NAME=OMERO-server
01:12:10 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:12:10 + mkdir -p /home/omero/omero-server-data
01:12:10 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:12:10 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:10 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:10 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:12:10 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:12:10 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:12:10 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:12:10 ++ ls OMERO.server-5.6.3-510-171f76ee69-ice36.zip
01:12:10 + ZIP=OMERO.server-5.6.3-510-171f76ee69-ice36.zip
01:12:10 + '[' '!' -z '' ']'
01:12:10 + DIST=OMERO.server-5.6.3-510-171f76ee69-ice36
01:12:10 + unzip OMERO.server-5.6.3-510-171f76ee69-ice36.zip
01:12:10 Archive:  OMERO.server-5.6.3-510-171f76ee69-ice36.zip
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/blitz/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/grid/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/profiles/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/error/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/grid/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/luts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/luts/janelia/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/luts/ncsa_paledit/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/luts/wcif/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/omero/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/omero/analysis_scripts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/omero/annotation_scripts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/omero/export_scripts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/omero/figure_scripts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/omero/import_scripts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/scripts/omero/util_scripts/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/server/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/share/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/share/licenses/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/misc/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__1/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__10/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__11/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__2/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__3/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__4/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__5/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__6/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__7/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__8/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3A__9/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3__4/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3__5/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3__6/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO3__7/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO4.1__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO4.2__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO4.2__0/t/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO4.3__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO4.4__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO4__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.0__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.1__1/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.2__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.3__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.4DEV__1/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.4DEV__2/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.4DEV__3/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/sql/psql/OMERO5.4__0/
01:12:10    creating: OMERO.server-5.6.3-510-171f76ee69-ice36/var/
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/LICENSE.txt  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/backup.cfg  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/blitz/mail-senders.example  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/blitz/mail-server.example  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/build.properties  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/env.bat  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/env.sh  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/hibernate.properties  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/ice.config  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/logback-cli.xml  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/logback-indexing-cli.xml  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/logback-indexing.xml  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/logback.xml  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/mime.types  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/node1.cfg  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/node2.cfg  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/omero.properties  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/profiles/psql  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/rollover.cfg  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/Windows.cfg  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/error/maintainance.html  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/grid/README  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/grid/default.xml  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/grid/templates.xml  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/grid/windefault.xml  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/ice.config  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/internal.cfg  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/master.cfg  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/templates/robot.template  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/etc/testdropbox.config  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/history.rst  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/OMEZarrReader.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/activation.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/aggdesigner-algorithm.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/aircompressor.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/annotations.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/antlr.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/aopalliance.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/avatica-core.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/avatica-metrics.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/aws-java-sdk-core.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/aws-java-sdk-kms.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/aws-java-sdk-s3.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/base.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-all.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-anim.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-awt-util.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-bridge.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-codec.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-constants.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-css.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-dom.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-ext.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-extension.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-gui-util.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-gvt.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-i18n.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-parser.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-rasterizer-ext.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-rasterizer.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-script.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-slideshow.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-squiggle-ext.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-squiggle.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-svg-dom.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-svgbrowser.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-svggen.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-svgpp.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-svgrasterizer.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-swing.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-transcoder.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-ttf2svg.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-util.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/batik-xml.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/btm.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/bufr.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/c3p0.jar  
01:12:10   inflating: OMERO.server-5.6.3-510-171f76ee69-ice36/lib/client/calcite-core.jar  
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01:12:12 + rm -f OMERO.server-5.6.3-510-171f76ee69-ice36.zip
01:12:12 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-510-171f76ee69-ice36 /home/omero/workspace/OMERO-server/OMERO.server
01:12:12 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:12:12 ++ deactivate nondestructive
01:12:12 ++ '[' -n '' ']'
01:12:12 ++ '[' -n '' ']'
01:12:12 ++ '[' -n /bin/bash -o -n '' ']'
01:12:12 ++ hash -r
01:12:12 ++ '[' -n '' ']'
01:12:12 ++ unset VIRTUAL_ENV
01:12:12 ++ '[' '!' nondestructive = nondestructive ']'
01:12:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:12:12 ++ export VIRTUAL_ENV
01:12:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:12 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:12 ++ export PATH
01:12:12 ++ '[' -n '' ']'
01:12:12 ++ '[' -z '' ']'
01:12:12 ++ _OLD_VIRTUAL_PS1=
01:12:12 ++ PS1='(.venv3) '
01:12:12 ++ export PS1
01:12:12 ++ '[' -n /bin/bash -o -n '' ']'
01:12:12 ++ hash -r
01:12:12 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:12:13 Collecting zeroc-ice==3.6.5
01:12:13   Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:12:15 Installing collected packages: zeroc-ice
01:12:16 Successfully installed zeroc-ice-3.6.5
01:12:16 + pip install -U pip future
01:12:17 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:12:17 Collecting pip
01:12:17   Using cached pip-24.2-py3-none-any.whl (1.8 MB)
01:12:17 Collecting future
01:12:17   Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:12:17 Installing collected packages: pip, future
01:12:17   Attempting uninstall: pip
01:12:17     Found existing installation: pip 21.2.3
01:12:17     Uninstalling pip-21.2.3:
01:12:17       Successfully uninstalled pip-21.2.3
01:12:19 Successfully installed future-1.0.0 pip-24.2
01:12:19 + pip install markdown
01:12:20 Collecting markdown
01:12:20   Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:12:20 Collecting importlib-metadata>=4.4 (from markdown)
01:12:20   Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
01:12:20 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:12:20   Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
01:12:20 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:12:20 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
01:12:20 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
01:12:20 Installing collected packages: zipp, importlib-metadata, markdown
01:12:20 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
01:12:20 + pip install reportlab
01:12:21 Collecting reportlab
01:12:22   Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
01:12:22 Collecting pillow>=9.0.0 (from reportlab)
01:12:22   Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
01:12:22 Collecting chardet (from reportlab)
01:12:22   Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
01:12:22 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
01:12:22 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:12:22 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
01:12:22 Installing collected packages: pillow, chardet, reportlab
01:12:24 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
01:12:24 + pip install omego
01:12:24 Collecting omego
01:12:24   Using cached omego-0.7.0-py3-none-any.whl
01:12:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
01:12:25 Collecting yaclifw>=0.1.1 (from omego)
01:12:25   Using cached yaclifw-0.2.0-py3-none-any.whl
01:12:25 Collecting six (from yaclifw>=0.1.1->omego)
01:12:25   Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
01:12:25 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
01:12:25 Installing collected packages: six, yaclifw, omego
01:12:25 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
01:12:25 + pip install tables
01:12:26 Collecting tables
01:12:26   Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:12:26 Collecting numpy>=1.19.0 (from tables)
01:12:26   Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:12:27 Collecting numexpr>=2.6.2 (from tables)
01:12:27   Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
01:12:27 Collecting packaging (from tables)
01:12:27   Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
01:12:27 Collecting py-cpuinfo (from tables)
01:12:27   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:12:27 Collecting blosc2>=2.3.0 (from tables)
01:12:27   Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:12:27 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:12:27   Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
01:12:27 Collecting msgpack (from blosc2>=2.3.0->tables)
01:12:27   Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:12:27 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:12:27 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:12:27 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
01:12:27 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:12:28 Using cached packaging-24.1-py3-none-any.whl (53 kB)
01:12:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:12:28 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
01:12:28 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:12:28 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:12:33 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
01:12:33 + pip install jinja2
01:12:33 Collecting jinja2
01:12:33   Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
01:12:33 Collecting MarkupSafe>=2.0 (from jinja2)
01:12:33   Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
01:12:33 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
01:12:33 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
01:12:34 Installing collected packages: MarkupSafe, jinja2
01:12:34 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
01:12:34 + pip install omero-py
01:12:34 Collecting omero-py
01:12:34   Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
01:12:35 Collecting urllib3<2 (from omero-py)
01:12:35   Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:12:35 Collecting appdirs (from omero-py)
01:12:35   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:12:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:12:35 Collecting numpy<2 (from omero-py)
01:12:35   Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:12:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
01:12:35 Collecting PyYAML (from omero-py)
01:12:35   Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:12:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:12:35 Collecting requests (from omero-py)
01:12:35   Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:12:35 Collecting portalocker (from omero-py)
01:12:35   Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
01:12:35 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:12:35   Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
01:12:36 Collecting idna<4,>=2.5 (from requests->omero-py)
01:12:36   Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:12:36 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:12:36   Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
01:12:36 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
01:12:36 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:12:36 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:12:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:12:36 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
01:12:36 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:12:36 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:12:36 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
01:12:36 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
01:12:36 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:12:36 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
01:12:37   Attempting uninstall: numpy
01:12:37     Found existing installation: numpy 2.0.2
01:12:37     Uninstalling numpy-2.0.2:
01:12:37       Successfully uninstalled numpy-2.0.2
01:12:41 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
01:12:41 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:12:42 Collecting omero-metadata
01:12:42   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-h4z1mi22/omero-metadata_63d80d29c1354234a9b082b2e664bea5
01:12:42   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-h4z1mi22/omero-metadata_63d80d29c1354234a9b082b2e664bea5
01:12:43   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 99e819f46ea168b33f034fa41da1231cbaa4c043
01:12:43   Installing build dependencies: started
01:12:45   Installing build dependencies: finished with status 'done'
01:12:45   Getting requirements to build wheel: started
01:12:45   Getting requirements to build wheel: finished with status 'done'
01:12:45   Preparing metadata (pyproject.toml): started
01:12:45   Preparing metadata (pyproject.toml): finished with status 'done'
01:12:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
01:12:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
01:12:45 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
01:12:45 Collecting pandas (from omero-metadata)
01:12:45   Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
01:12:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
01:12:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:12:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:12:45 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
01:12:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
01:12:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:12:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
01:12:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
01:12:45 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
01:12:45 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:12:45   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:12:45 Collecting pytz>=2020.1 (from pandas->omero-metadata)
01:12:46   Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:12:46 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
01:12:46   Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
01:12:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
01:12:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
01:12:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
01:12:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
01:12:46 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
01:12:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:12:46 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:12:46 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
01:12:46 Building wheels for collected packages: omero-metadata
01:12:46   Building wheel for omero-metadata (pyproject.toml): started
01:12:46   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:12:46   Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=26fe45afa130b5ba6eb4ac9c48457a327ca1f75ceaccec89f09960815dfc05cb
01:12:46   Stored in directory: /tmp/pip-ephem-wheel-cache-vasnoknb/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
01:12:46 Successfully built omero-metadata
01:12:46 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:12:51 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.1
01:12:52 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:12:52 Collecting omero-cli-render
01:12:52   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-fgaghemg/omero-cli-render_1c78e78c37574a2ca93fbd9f75f9c9c2
01:12:52   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-fgaghemg/omero-cli-render_1c78e78c37574a2ca93fbd9f75f9c9c2
01:12:53   Running command git checkout -b merge_ci --track origin/merge_ci
01:12:53   Switched to a new branch 'merge_ci'
01:12:53   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:12:53   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c0fe7091dd70d25bb4af0d4e87f44ad6917340be
01:12:53   Installing build dependencies: started
01:12:55   Installing build dependencies: finished with status 'done'
01:12:55   Getting requirements to build wheel: started
01:12:55   Getting requirements to build wheel: finished with status 'done'
01:12:55   Preparing metadata (pyproject.toml): started
01:12:55   Preparing metadata (pyproject.toml): finished with status 'done'
01:12:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
01:12:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
01:12:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
01:12:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:12:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:12:55 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
01:12:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
01:12:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:12:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
01:12:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
01:12:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
01:12:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
01:12:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
01:12:55 Building wheels for collected packages: omero-cli-render
01:12:55   Building wheel for omero-cli-render (pyproject.toml): started
01:12:56   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:12:56   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=29368b531b7d956d175939382f474fef4137b83b6c49df6119fd78ee1f708137
01:12:56   Stored in directory: /tmp/pip-ephem-wheel-cache-mhccnp2g/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
01:12:56 Successfully built omero-cli-render
01:12:56 Installing collected packages: omero-cli-render
01:12:56 Successfully installed omero-cli-render-0.8.2.dev0
01:12:56 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:12:56 Collecting omero-cli-duplicate
01:12:56   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-av_9l3k4/omero-cli-duplicate_b088c95df62a442f86ffc54952935213
01:12:56   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-av_9l3k4/omero-cli-duplicate_b088c95df62a442f86ffc54952935213
01:12:57   Running command git checkout -b merge_ci --track origin/merge_ci
01:12:57   Switched to a new branch 'merge_ci'
01:12:57   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:12:57   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 5671d41b688b2bc58739a95fe1dcf4b07baf6c52
01:12:57   Installing build dependencies: started
01:12:59   Installing build dependencies: finished with status 'done'
01:12:59   Getting requirements to build wheel: started
01:12:59   Getting requirements to build wheel: finished with status 'done'
01:12:59   Preparing metadata (pyproject.toml): started
01:12:59   Preparing metadata (pyproject.toml): finished with status 'done'
01:12:59 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
01:12:59 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:12:59 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:12:59 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:12:59 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:12:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
01:12:59 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:12:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:12:59 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:12:59 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
01:12:59 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
01:12:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:12:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
01:12:59 Building wheels for collected packages: omero-cli-duplicate
01:12:59   Building wheel for omero-cli-duplicate (pyproject.toml): started
01:13:00   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:13:00   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=0a1d29829c4f4d722eb3c2b63fdc6479e175a5f50a09e6517a53a47bd0f26351
01:13:00   Stored in directory: /tmp/pip-ephem-wheel-cache-lkohicrj/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:13:00 Successfully built omero-cli-duplicate
01:13:00 Installing collected packages: omero-cli-duplicate
01:13:00 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:13:00 + pip install omero-certificates
01:13:00 Collecting omero-certificates
01:13:00   Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:13:01 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
01:13:01 Collecting distro==1.8.0 (from omero-certificates)
01:13:01   Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:13:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:13:01 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:13:01 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:13:01 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:13:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
01:13:01 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:13:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:13:01 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:13:01 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
01:13:01 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
01:13:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:13:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
01:13:01 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:13:01 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:13:01 Installing collected packages: distro, omero-certificates
01:13:01 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:13:01 + for x in *.tar.gz
01:13:01 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:13:01 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:13:01   Installing build dependencies: started
01:13:03   Installing build dependencies: finished with status 'done'
01:13:03   Getting requirements to build wheel: started
01:13:03   Getting requirements to build wheel: finished with status 'done'
01:13:03   Preparing metadata (pyproject.toml): started
01:13:03   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:03 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
01:13:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:13:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:13:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:13:03 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:13:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
01:13:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:13:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:13:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:13:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
01:13:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
01:13:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:13:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
01:13:04 Building wheels for collected packages: omero-dropbox
01:13:04   Building wheel for omero-dropbox (pyproject.toml): started
01:13:04   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:13:04   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=5e11cdf4216964bbb426f4c9d49dd312fac9c3ff1aaf66289d9557d6307131a2
01:13:04   Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
01:13:04 Successfully built omero-dropbox
01:13:04 Installing collected packages: omero-dropbox
01:13:04 Successfully installed omero-dropbox-5.7.1.dev0
01:13:04 + for x in *.tar.gz
01:13:04 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:13:04 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:13:04   Installing build dependencies: started
01:13:06   Installing build dependencies: finished with status 'done'
01:13:06   Getting requirements to build wheel: started
01:13:07   Getting requirements to build wheel: finished with status 'done'
01:13:07   Preparing metadata (pyproject.toml): started
01:13:07   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:07 Building wheels for collected packages: omero_marshal
01:13:07   Building wheel for omero_marshal (pyproject.toml): started
01:13:07   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:13:07   Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=0fb9c6cde162d8be93575cf282ea2241e1a45de687072cdd8ba0968b09e79ce6
01:13:07   Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
01:13:07 Successfully built omero_marshal
01:13:07 Installing collected packages: omero_marshal
01:13:08 Successfully installed omero_marshal-0.9.1.dev0
01:13:08 + for x in *.tar.gz
01:13:08 + pip install -U omero_py-5.19.6.dev0.tar.gz
01:13:08 Processing ./omero_py-5.19.6.dev0.tar.gz
01:13:08   Installing build dependencies: started
01:13:11   Installing build dependencies: finished with status 'done'
01:13:11   Getting requirements to build wheel: started
01:13:12   Getting requirements to build wheel: finished with status 'done'
01:13:12   Preparing metadata (pyproject.toml): started
01:13:12   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
01:13:12 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
01:13:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
01:13:12 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
01:13:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0)
01:13:12 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
01:13:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
01:13:12 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
01:13:12 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
01:13:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2)
01:13:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
01:13:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
01:13:12 Building wheels for collected packages: omero-py
01:13:12   Building wheel for omero-py (pyproject.toml): started
01:13:13   Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:13:13   Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783136 sha256=02de559f9779dcff49f5e1cba579d57a94a0e8db44c5974c746af197795b1266
01:13:13   Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
01:13:13 Successfully built omero-py
01:13:14 Installing collected packages: omero-py
01:13:14   Attempting uninstall: omero-py
01:13:14     Found existing installation: omero-py 5.19.5
01:13:14     Uninstalling omero-py-5.19.5:
01:13:14       Successfully uninstalled omero-py-5.19.5
01:13:17 Successfully installed omero-py-5.19.6.dev0
01:13:17 + for x in *.tar.gz
01:13:17 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
01:13:17 Processing ./omero_scripts-5.8.4.dev0.tar.gz
01:13:17   Installing build dependencies: started
01:13:20   Installing build dependencies: finished with status 'done'
01:13:20   Getting requirements to build wheel: started
01:13:20   Getting requirements to build wheel: finished with status 'done'
01:13:20   Preparing metadata (pyproject.toml): started
01:13:20   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:20 Building wheels for collected packages: omero-scripts
01:13:20   Building wheel for omero-scripts (pyproject.toml): started
01:13:21   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:13:21   Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=3fa7738fe9e81a3bb510fe2638652ecc72fca5b77d23e31ed816d0d766859b12
01:13:21   Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
01:13:21 Successfully built omero-scripts
01:13:21 Installing collected packages: omero-scripts
01:13:21 Successfully installed omero-scripts-5.8.4.dev0
01:13:21 + for x in *.tar.gz
01:13:21 + pip install -U omero_web-5.27.3.dev0.tar.gz
01:13:21 Processing ./omero_web-5.27.3.dev0.tar.gz
01:13:22   Installing build dependencies: started
01:13:25   Installing build dependencies: finished with status 'done'
01:13:25   Getting requirements to build wheel: started
01:13:25   Getting requirements to build wheel: finished with status 'done'
01:13:25   Preparing metadata (pyproject.toml): started
01:13:25   Preparing metadata (pyproject.toml): finished with status 'done'
01:13:25 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
01:13:25 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0)
01:13:25   Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:13:26 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0)
01:13:26   Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
01:13:26 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0)
01:13:26   Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:13:26 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0)
01:13:26   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:13:26 Collecting django-csp (from omero-web==5.27.3.dev0)
01:13:26   Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:13:26 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0)
01:13:26   Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
01:13:26 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0)
01:13:26   Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:13:26 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
01:13:26 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0)
01:13:26 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
01:13:26 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
01:13:26 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
01:13:26 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
01:13:26   Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:13:26 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
01:13:26   Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
01:13:26 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
01:13:26 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
01:13:26 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
01:13:26 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
01:13:26 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
01:13:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
01:13:26 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
01:13:26 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
01:13:26   Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:13:26 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2)
01:13:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
01:13:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
01:13:26 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:13:26 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:13:26 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:13:26 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
01:13:27 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:13:27 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
01:13:27 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:13:27 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:13:27 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
01:13:27 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:13:27 Building wheels for collected packages: omero-web
01:13:27   Building wheel for omero-web (pyproject.toml): started
01:13:28   Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:13:28   Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766665 sha256=7023aba8dba6de7dc554b08b975d0fd94070fec3c261f82b3121d27fe350d0e3
01:13:28   Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b
01:13:28 Successfully built omero-web
01:13:29 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
01:13:33 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
01:13:33 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:13:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:13:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:13:33 --2024-09-23 01:13:33--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:13:34 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ...
01:13:34 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
01:13:34 HTTP request sent, awaiting response... 200 OK
01:13:34 Length: 98962 (97K) [text/plain]
01:13:34 Saving to: ‘Figure_To_Pdf.py’
01:13:34 
01:13:34      0K .......... .......... .......... .......... .......... 51% 1.22M 0s
01:13:34     50K .......... .......... .......... .......... ......    100% 7.80M=0.05s
01:13:34 
01:13:34 2024-09-23 01:13:34 (2.05 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962]
01:13:34 
01:13:34 + chmod 755 Figure_To_Pdf.py
01:13:34 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:13:34 + omero config set omero.db.name OMERO-server
01:13:36 + omero config set omero.db.host pg
01:13:37 + omero config set omero.db.user postgres
01:13:39 + omero config set omero.data.dir /home/omero/omero-server-data
01:13:40 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:13:42 + omero config set omero.db.poolsize 25
01:13:44 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:13:45 + omero config set omero.security.trustStorePassword changeit
01:13:47 + omero config set omero.mail.config true
01:13:49 + omero config set omero.mail.from qa@openmicroscopy.org.uk
01:13:50 + omero config set omero.mail.host smtp.dundee.ac.uk
01:13:52 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:13:53 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:13:55 + omero certificates
01:13:57 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:13:57 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:13:57 + '[' false = true ']'
01:13:57 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:13:57 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:13:57 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:13:57 2024-09-23 01:13:57,707 [    omego.db] DEBUG            dbcommand => upgrade
01:13:57 2024-09-23 01:13:57,707 [    omego.db] DEBUG               dbhost => localhost
01:13:57 2024-09-23 01:13:57,708 [    omego.db] DEBUG               dbname => OMERO-server
01:13:57 2024-09-23 01:13:57,708 [    omego.db] DEBUG               dbpass => omero
01:13:57 2024-09-23 01:13:57,708 [    omego.db] DEBUG               dbuser => omero
01:13:57 2024-09-23 01:13:57,708 [    omego.db] DEBUG             rootpass => omero
01:13:57 2024-09-23 01:13:57,708 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:13:57 2024-09-23 01:13:57,708 [omego.extern] INFO  Executing : omero version
01:13:59 OMERO.py version:
01:13:59 OMERO.server version:
01:13:59 5.6.3-510-171f76ee69-ice36
01:13:59 5.19.6.dev0
01:13:59 2024-09-23 01:13:59,474 [omego.extern] INFO  Completed [1.766 s]
01:13:59 2024-09-23 01:13:59,475 [omego.extern] DEBUG Using omero CLI from omero
01:13:59 2024-09-23 01:13:59,475 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:13:59 2024-09-23 01:13:59,475 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:13:59 2024-09-23 01:13:59,475 [omego.extern] INFO  Executing : omero config get --show-password
01:14:01 2024-09-23 01:14:01,133 [omego.extern] INFO  Completed [1.658 s]
01:14:01 2024-09-23 01:14:01,133 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:14:01 2024-09-23 01:14:01,133 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:14:01 2024-09-23 01:14:01,315 [omego.extern] INFO  Completed [0.181 s]
01:14:01 2024-09-23 01:14:01,315 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
01:14:01 2024-09-23 01:14:01,315 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.4
01:14:01 
01:14:01 2024-09-23 01:14:01,315 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:14:01 2024-09-23 01:14:01,315 [omego.extern] INFO  Executing : omero config get --show-password
01:14:03 2024-09-23 01:14:03,205 [omego.extern] INFO  Completed [1.890 s]
01:14:03 2024-09-23 01:14:03,206 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:14:03 2024-09-23 01:14:03,206 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:14:03 2024-09-23 01:14:03,302 [omego.extern] INFO  Completed [0.096 s]
01:14:03 2024-09-23 01:14:03,303 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n'
01:14:03 2024-09-23 01:14:03,303 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:14:03 2024-09-23 01:14:03,303 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:14:03 2024-09-23 01:14:03,303 [omego.extern] INFO  Executing : omero config get --show-password
01:14:04 2024-09-23 01:14:04,781 [omego.extern] INFO  Completed [1.478 s]
01:14:04 2024-09-23 01:14:04,782 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:14:04 2024-09-23 01:14:04,782 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:14:04 2024-09-23 01:14:04,888 [omego.extern] INFO  Completed [0.106 s]
01:14:04 2024-09-23 01:14:04,888 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:14:04 2024-09-23 01:14:04,888 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
01:14:04 2024-09-23 01:14:04,890 [    omego.db] INFO  Database is already at OMERO5.4__0
01:14:04 + export LANG=en_US.UTF-8
01:14:04 + LANG=en_US.UTF-8
01:14:04 + export LANGUAGE=en_US:en
01:14:04 + LANGUAGE=en_US:en
01:14:04 + export LC_ALL=en_US.UTF-8
01:14:04 + LC_ALL=en_US.UTF-8
01:14:04 + BUILD_ID=DONT_KILL_ME
01:14:04 + omero admin start
01:14:16 No descriptor given. Using etc/grid/default.xml
01:14:30 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:14:30 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:14:30 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:14:30 Waiting on startup. Use CTRL-C to exit
01:14:30 + omero admin waitup
01:14:31 Waiting on startup. Use CTRL-C to exit
01:14:32 + omero admin diagnostics
01:14:33 
01:14:33 ================================================================================
01:14:33 OMERO Diagnostics (admin)
01:14:33 ================================================================================
01:14:33         
01:14:33 Commands:   java -version                  11.0.24   (/usr/bin/java)
01:14:33 Commands:   python -V                      3.9.18    (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:14:33 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
01:14:33 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
01:14:33 Commands:   psql --version                 16.4      (/usr/bin/psql)
01:14:33 Commands:   openssl version                3.0.71    (/usr/bin/openssl)
01:14:33 
01:14:33 Component:  OMERO.py                       5.19.6.dev0
01:14:33 Component:  OMERO.server                   5.6.3-510-171f76ee69-ice36
01:14:33 
01:14:33 Server:     icegridnode                    running
01:14:33 Server:     Blitz-0                        active (pid = 32307, enabled)
01:14:33 Server:     Indexer-0                      activating (enabled)
01:14:33 Server:     OMERO.Glacier2                 active (pid = 32335, enabled)
01:14:33 Server:     OMERO.IceStorm                 active (pid = 32361, enabled)
01:14:33 Server:     Processor-0                    activating (enabled)
01:14:33 Server:     Tables-0                       activating (enabled)
01:14:33 
01:14:33 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:14:33 Log files:  Blitz-0.log                    21.7 KB       errors=0    warnings=1   
01:14:33 Log files:  DropBox.log                    n/a
01:14:33 Log files:  FileServer.log                 n/a
01:14:33 Log files:  Indexer-0.log                  2.4 KB       
01:14:33 Log files:  MonitorServer.log              n/a
01:14:33 Log files:  Processor-0.log                592 B        
01:14:33 Log files:  Tables-0.log                   841 B        
01:14:33 Log files:  TestDropBox.log                n/a
01:14:33 Log files:  master.err                     180 B        
01:14:33 Log files:  master.out                     30.1 KB      
01:14:33 Log files:  Total size                     0.06 MB
01:14:33 
01:14:33 
01:14:33 Environment:OMERO_HOME=(unset)             
01:14:33 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
01:14:33 Environment:OMERO_NODE=(unset)             
01:14:33 Environment:OMERO_MASTER=(unset)           
01:14:33 Environment:OMERO_USERDIR=(unset)          
01:14:33 Environment:OMERO_TMPDIR=(unset)           
01:14:33 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
01:14:33 Environment:PYTHONPATH=(unset)             
01:14:33 Environment:ICE_HOME=/opt/ice-3.6.5        
01:14:33 Environment:LD_LIBRARY_PATH=(unset)        
01:14:33 Environment:DYLD_LIBRARY_PATH=(unset)      
01:14:33 
01:14:33 OMERO SSL port:4064                           
01:14:33 OMERO TCP port:4063                           
01:14:33 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
01:14:33 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
01:14:33 
01:14:33 JVM settings: Blitz-${index}                -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:33 JVM settings: Indexer-${index}              -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:33 JVM settings: PixelData-${index}            -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:33 JVM settings: Repository-${index}           -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:33 
01:14:33 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.0.0-SNAPSHOT	23 September 2024	18c9ffa40b6dda89e6ebb953e35e71aa3a640d35
01:14:33 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.0.0-SNAPSHOT	23 September 2024	18c9ffa40b6dda89e6ebb953e35e71aa3a640d35
01:14:33 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.0.0-SNAPSHOT	23 September 2024	18c9ffa40b6dda89e6ebb953e35e71aa3a640d35
01:14:33 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.0.4-SNAPSHOT	23 September 2024	00296f546ca1d776ebce1f9af27da103ad545029
01:14:33 Jar:        lib/server/ome-common.jar      OME Common Java	6.0.24-SNAPSHOT	23 September 2024	00296f546ca1d776ebce1f9af27da103ad545029
01:14:33 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5-SNAPSHOT	23 September 2024	00296f546ca1d776ebce1f9af27da103ad545029
01:14:33 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4-SNAPSHOT	23 September 2024	00296f546ca1d776ebce1f9af27da103ad545029
01:14:33 Jar:        lib/server/ome-poi.jar         OME POI	5.3.10-SNAPSHOT	23 September 2024	00296f546ca1d776ebce1f9af27da103ad545029
01:14:33 Jar:        lib/server/ome-xml.jar         OME XML library	6.3.7-SNAPSHOT	23 September 2024	00296f546ca1d776ebce1f9af27da103ad545029
01:14:33 Jar:        lib/server/omero-blitz.jar     jar	5.7.5-SNAPSHOT		
01:14:33 Jar:        lib/server/omero-common.jar    jar	5.6.8-SNAPSHOT		
01:14:33 Jar:        lib/server/omero-gateway.jar   jar	5.9.4-SNAPSHOT		
01:14:33 Jar:        lib/server/omero-model.jar     jar	5.6.16-SNAPSHOT		
01:14:33 Jar:        lib/server/omero-renderer.jar  jar	5.5.18-SNAPSHOT		
01:14:33 Jar:        lib/server/omero-romio.jar     jar	5.7.8-SNAPSHOT		
01:14:33 Jar:        lib/server/omero-server.jar    jar	5.6.13-SNAPSHOT		
01:14:34 + deactivate
01:14:34 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:14:34 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:14:34 + export PATH
01:14:34 + unset _OLD_VIRTUAL_PATH
01:14:34 + '[' -n '' ']'
01:14:34 + '[' -n /bin/bash -o -n '' ']'
01:14:34 + hash -r
01:14:34 + '[' -n '' ']'
01:14:34 + unset VIRTUAL_ENV
01:14:34 + '[' '!' '' = nondestructive ']'
01:14:34 + unset -f deactivate
01:14:34 Finished: SUCCESS