01:11:30 Started by upstream project "Trigger" build number 222
01:11:30 originally caused by:
01:11:30 Started by timer
01:11:30 Running as SYSTEM
01:11:31 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:11:31 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4483620290836405195.sh
01:11:31 + source /home/settings.env
01:11:31 ++ OMERO_DB_HOST=pg
01:11:31 ++ OMERO_DB_USER=postgres
01:11:31 ++ OMERO_DB_PASS=
01:11:31 ++ OMERO_ROOT_PASS=omero
01:11:31 ++ OMERO_DATA_DIR=/OMERO
01:11:31 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:11:31 + OMERO_DB_NAME=OMERO-server
01:11:31 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:11:31 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:11:31 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:11:31 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:11:31 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:11:31 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:11:31 ++ deactivate nondestructive
01:11:31 ++ '[' -n '' ']'
01:11:31 ++ '[' -n '' ']'
01:11:31 ++ '[' -n /bin/bash -o -n '' ']'
01:11:31 ++ hash -r
01:11:31 ++ '[' -n '' ']'
01:11:31 ++ unset VIRTUAL_ENV
01:11:31 ++ '[' '!' nondestructive = nondestructive ']'
01:11:31 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:11:31 ++ export VIRTUAL_ENV
01:11:31 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:11:31 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:11:31 ++ export PATH
01:11:31 ++ '[' -n '' ']'
01:11:31 ++ '[' -z '' ']'
01:11:31 ++ _OLD_VIRTUAL_PS1=
01:11:31 ++ PS1='(.venv3) '
01:11:31 ++ export PS1
01:11:31 ++ '[' -n /bin/bash -o -n '' ']'
01:11:31 ++ hash -r
01:11:31 + omero admin stop
01:11:40 Waiting on shutdown. Use CTRL-C to exit
01:11:40 .+ sleep 5
01:11:56 + deactivate
01:11:56 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:11:56 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:11:56 + export PATH
01:11:56 + unset _OLD_VIRTUAL_PATH
01:11:56 + '[' -n '' ']'
01:11:56 + '[' -n /bin/bash -o -n '' ']'
01:11:56 + hash -r
01:11:56 + '[' -n '' ']'
01:11:56 + unset VIRTUAL_ENV
01:11:56 + '[' '!' '' = nondestructive ']'
01:11:56 + unset -f deactivate
01:11:56 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:11:58 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
01:12:03 + '[' false = true ']'
01:12:03 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:12:03 Skipping PURGE_DATA:CleanDbAndRepo
01:12:03 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:12:06 Copied 1 artifact from "OMERO-build" build number 185
01:12:06 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 182
01:12:06 Copied 2 artifacts from "OMERO-build-build" build number 190
01:12:06 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3452559248749977772.sh
01:12:06 + source /home/settings.env
01:12:06 ++ OMERO_DB_HOST=pg
01:12:06 ++ OMERO_DB_USER=postgres
01:12:06 ++ OMERO_DB_PASS=
01:12:06 ++ OMERO_ROOT_PASS=omero
01:12:06 ++ OMERO_DATA_DIR=/OMERO
01:12:06 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:12:06 + OMERO_DB_NAME=OMERO-server
01:12:06 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:12:06 + mkdir -p /home/omero/omero-server-data
01:12:06 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:12:06 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:06 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:12:06 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:12:06 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:12:06 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:12:06 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:12:06 ++ ls OMERO.server-5.6.3-510-5e284cc951-ice36.zip
01:12:06 + ZIP=OMERO.server-5.6.3-510-5e284cc951-ice36.zip
01:12:06 + '[' '!' -z '' ']'
01:12:06 + DIST=OMERO.server-5.6.3-510-5e284cc951-ice36
01:12:06 + unzip OMERO.server-5.6.3-510-5e284cc951-ice36.zip
01:12:07 Archive: OMERO.server-5.6.3-510-5e284cc951-ice36.zip
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/blitz/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/grid/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/profiles/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/error/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/grid/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/luts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/luts/janelia/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/luts/ncsa_paledit/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/luts/wcif/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/omero/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/omero/analysis_scripts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/omero/annotation_scripts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/omero/export_scripts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/omero/figure_scripts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/omero/import_scripts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/scripts/omero/util_scripts/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/misc/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__1/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__10/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__11/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__2/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__3/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__4/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__5/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__6/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__7/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__8/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__9/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__4/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__5/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__6/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__7/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.1__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.2__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.2__0/t/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.3__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.4__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.0__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.1__1/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.2__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.3__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4DEV__1/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4DEV__2/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4DEV__3/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/
01:12:07 creating: OMERO.server-5.6.3-510-5e284cc951-ice36/var/
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/LICENSE.txt
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/backup.cfg
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/blitz/mail-senders.example
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/blitz/mail-server.example
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/build.properties
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/env.bat
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/env.sh
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/hibernate.properties
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/ice.config
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/logback-cli.xml
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/logback-indexing-cli.xml
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/logback-indexing.xml
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/logback.xml
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/mime.types
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/node1.cfg
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/node2.cfg
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/omero.properties
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/profiles/psql
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/rollover.cfg
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/Windows.cfg
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/error/maintainance.html
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/grid/README
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/grid/default.xml
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/grid/templates.xml
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/grid/windefault.xml
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/ice.config
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/internal.cfg
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/master.cfg
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/templates/robot.template
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/etc/testdropbox.config
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/history.rst
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/OMEZarrReader.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/activation.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/aggdesigner-algorithm.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/aircompressor.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/annotations.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/antlr.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/aopalliance.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/avatica-core.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/avatica-metrics.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/aws-java-sdk-core.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/aws-java-sdk-kms.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/aws-java-sdk-s3.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/base.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-all.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-anim.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-awt-util.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-bridge.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-codec.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-constants.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-css.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-dom.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-ext.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-extension.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-gui-util.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-gvt.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-i18n.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-parser.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-rasterizer-ext.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-rasterizer.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-script.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-slideshow.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-squiggle-ext.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-squiggle.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-svg-dom.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-svgbrowser.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-svggen.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-svgpp.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-svgrasterizer.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-swing.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-transcoder.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-ttf2svg.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-util.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/batik-xml.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/btm.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/bufr.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/c3p0.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/calcite-core.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/calcite-linq4j.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/cdm-core.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/checker-qual.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/commons-beanutils.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/commons-codec.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/commons-collections.jar
01:12:07 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/client/commons-collections4.jar
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01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/protobuf-java.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/quartz.jar
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01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/reflectasm.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/rhino.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/serializer.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/sketches-core.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/slf4j-api.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/snakeyaml.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/solr-analysis-extras.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/solr-commons-csv.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/solr-core.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/solr-solrj.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/specification.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-aop.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-beans.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-context-support.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-context.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-core.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-expression.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-jdbc.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-jms.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-ldap-core.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-messaging.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-orm.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-security-core.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-security-ldap.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/spring-tx.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/sqlite-jdbc.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/subethasmtp.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/turbojpeg.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/udunits.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/xalan.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/xercesImpl.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/xml-apis-ext.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/xml-apis.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/xmlgraphics-commons.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/xmpcore.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/lib/server/xpp3.jar
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/README
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/agpl.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/antlr.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/apache-v1.1.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/apache-v2.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/asm.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/bouncy_castle_license.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/bsd.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/cddl-v1.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/cpl-v10.html
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/crystalclear.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/django.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/dom4j.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/epl-v1.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/fbsd.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/freemarker.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/gpl-v2.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/gpl.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/gtest.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/iconsweets_license.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/jamon.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/jmock.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/jquery.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/jtidy.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/lgpl-3.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/lgpl-v2.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/lgpl-v2.1.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/lgpl-v3.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/lgpl.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/matplotlib.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/mit.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/mpl-v1_0.htm
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/npl-1_1.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/path.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/pil.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/postgresql.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/psf-v2.0.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/psf-v2.5.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/scons.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/slf4j.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/tablelayout.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/which.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/zlib-libpng.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/share/licenses/zpl-v2.1.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/README.txt
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/misc/Makefile
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/misc/current.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/misc/enums.py
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/schema.sql
01:12:09 inflating: OMERO.server-5.6.3-510-5e284cc951-ice36/sql/psql/OMERO5.4__0/views.sql
01:12:09 + rm -f OMERO.server-5.6.3-510-5e284cc951-ice36.zip
01:12:09 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-510-5e284cc951-ice36 /home/omero/workspace/OMERO-server/OMERO.server
01:12:09 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:12:09 ++ deactivate nondestructive
01:12:09 ++ '[' -n '' ']'
01:12:09 ++ '[' -n '' ']'
01:12:09 ++ '[' -n /bin/bash -o -n '' ']'
01:12:09 ++ hash -r
01:12:09 ++ '[' -n '' ']'
01:12:09 ++ unset VIRTUAL_ENV
01:12:09 ++ '[' '!' nondestructive = nondestructive ']'
01:12:09 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:12:09 ++ export VIRTUAL_ENV
01:12:09 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:09 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:12:09 ++ export PATH
01:12:09 ++ '[' -n '' ']'
01:12:09 ++ '[' -z '' ']'
01:12:09 ++ _OLD_VIRTUAL_PS1=
01:12:09 ++ PS1='(.venv3) '
01:12:09 ++ export PS1
01:12:09 ++ '[' -n /bin/bash -o -n '' ']'
01:12:09 ++ hash -r
01:12:09 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:12:10 Collecting zeroc-ice==3.6.5
01:12:10 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:12:12 Installing collected packages: zeroc-ice
01:12:14 Successfully installed zeroc-ice-3.6.5
01:12:14 + pip install -U pip future
01:12:14 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:12:14 Collecting pip
01:12:14 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
01:12:14 Collecting future
01:12:15 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:12:15 Installing collected packages: pip, future
01:12:15 Attempting uninstall: pip
01:12:15 Found existing installation: pip 21.2.3
01:12:15 Uninstalling pip-21.2.3:
01:12:15 Successfully uninstalled pip-21.2.3
01:12:16 Successfully installed future-1.0.0 pip-24.2
01:12:16 + pip install markdown
01:12:17 Collecting markdown
01:12:17 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:12:17 Collecting importlib-metadata>=4.4 (from markdown)
01:12:17 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
01:12:17 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:12:17 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
01:12:17 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:12:17 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
01:12:17 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
01:12:17 Installing collected packages: zipp, importlib-metadata, markdown
01:12:17 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
01:12:18 + pip install reportlab
01:12:18 Collecting reportlab
01:12:18 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
01:12:19 Collecting pillow>=9.0.0 (from reportlab)
01:12:19 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
01:12:19 Collecting chardet (from reportlab)
01:12:19 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
01:12:19 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
01:12:19 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:12:19 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
01:12:19 Installing collected packages: pillow, chardet, reportlab
01:12:22 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
01:12:22 + pip install omego
01:12:23 Collecting omego
01:12:23 Using cached omego-0.7.0-py3-none-any.whl
01:12:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
01:12:23 Collecting yaclifw>=0.1.1 (from omego)
01:12:23 Using cached yaclifw-0.2.0-py3-none-any.whl
01:12:23 Collecting six (from yaclifw>=0.1.1->omego)
01:12:23 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
01:12:23 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
01:12:23 Installing collected packages: six, yaclifw, omego
01:12:23 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
01:12:23 + pip install tables
01:12:24 Collecting tables
01:12:24 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:12:24 Collecting numpy>=1.19.0 (from tables)
01:12:24 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:12:24 Collecting numexpr>=2.6.2 (from tables)
01:12:24 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
01:12:25 Collecting packaging (from tables)
01:12:25 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
01:12:25 Collecting py-cpuinfo (from tables)
01:12:25 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:12:25 Collecting blosc2>=2.3.0 (from tables)
01:12:25 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:12:25 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:12:25 Downloading ndindex-1.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:12:25 Collecting msgpack (from blosc2>=2.3.0->tables)
01:12:25 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:12:25 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:12:26 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:12:26 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
01:12:26 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:12:26 Using cached packaging-24.1-py3-none-any.whl (53 kB)
01:12:26 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:12:26 Downloading ndindex-1.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (466 kB)
01:12:26 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:12:26 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:12:31 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.1 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
01:12:31 + pip install jinja2
01:12:32 Collecting jinja2
01:12:32 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
01:12:32 Collecting MarkupSafe>=2.0 (from jinja2)
01:12:32 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
01:12:32 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
01:12:32 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
01:12:32 Installing collected packages: MarkupSafe, jinja2
01:12:32 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
01:12:32 + pip install omero-py
01:12:33 Collecting omero-py
01:12:33 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
01:12:33 Collecting urllib3<2 (from omero-py)
01:12:33 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:12:33 Collecting appdirs (from omero-py)
01:12:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:12:33 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:12:34 Collecting numpy<2 (from omero-py)
01:12:34 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:12:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
01:12:34 Collecting PyYAML (from omero-py)
01:12:34 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:12:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:12:35 Collecting requests (from omero-py)
01:12:35 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:12:35 Collecting portalocker (from omero-py)
01:12:35 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
01:12:35 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:12:35 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
01:12:35 Collecting idna<4,>=2.5 (from requests->omero-py)
01:12:35 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:12:36 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:12:36 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
01:12:36 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
01:12:36 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:12:36 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:12:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:12:36 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
01:12:36 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:12:36 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:12:36 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
01:12:36 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
01:12:36 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:12:37 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
01:12:37 Attempting uninstall: numpy
01:12:37 Found existing installation: numpy 2.0.2
01:12:37 Uninstalling numpy-2.0.2:
01:12:37 Successfully uninstalled numpy-2.0.2
01:12:44 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
01:12:44 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:12:44 Collecting omero-metadata
01:12:44 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-9znb1gf9/omero-metadata_b46510e2237a4da89667e654e08188ad
01:12:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-9znb1gf9/omero-metadata_b46510e2237a4da89667e654e08188ad
01:12:46 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit c393debd3be27daa09473a19cb30d6e656641523
01:12:46 Installing build dependencies: started
01:12:48 Installing build dependencies: finished with status 'done'
01:12:48 Getting requirements to build wheel: started
01:12:49 Getting requirements to build wheel: finished with status 'done'
01:12:49 Preparing metadata (pyproject.toml): started
01:12:49 Preparing metadata (pyproject.toml): finished with status 'done'
01:12:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
01:12:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
01:12:49 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
01:12:50 Collecting pandas (from omero-metadata)
01:12:50 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
01:12:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
01:12:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:12:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:12:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
01:12:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
01:12:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:12:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
01:12:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
01:12:50 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
01:12:50 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:12:50 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:12:50 Collecting pytz>=2020.1 (from pandas->omero-metadata)
01:12:50 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:12:50 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
01:12:50 Downloading tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)
01:12:50 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
01:12:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
01:12:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
01:12:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
01:12:50 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
01:12:50 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:12:50 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:12:50 Downloading tzdata-2024.2-py2.py3-none-any.whl (346 kB)
01:12:50 Building wheels for collected packages: omero-metadata
01:12:50 Building wheel for omero-metadata (pyproject.toml): started
01:12:51 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:12:51 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=adee9895e5a083e50af3154eb43f87bdff05f7f8f55239ba3f56313f34cbfefe
01:12:51 Stored in directory: /tmp/pip-ephem-wheel-cache-kkacgmdy/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
01:12:51 Successfully built omero-metadata
01:12:51 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:12:56 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2
01:12:56 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:12:57 Collecting omero-cli-render
01:12:57 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-8v3yo8cu/omero-cli-render_50b148967be7462ebe3fc5ff20ab2752
01:12:57 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-8v3yo8cu/omero-cli-render_50b148967be7462ebe3fc5ff20ab2752
01:12:57 Running command git checkout -b merge_ci --track origin/merge_ci
01:12:58 Switched to a new branch 'merge_ci'
01:12:58 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:12:58 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 2fd79c35f7a5d4f7ed088397072e9fd9b49a34cc
01:12:58 Installing build dependencies: started
01:13:00 Installing build dependencies: finished with status 'done'
01:13:00 Getting requirements to build wheel: started
01:13:00 Getting requirements to build wheel: finished with status 'done'
01:13:00 Preparing metadata (pyproject.toml): started
01:13:00 Preparing metadata (pyproject.toml): finished with status 'done'
01:13:00 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
01:13:00 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
01:13:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
01:13:00 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:13:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:13:00 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
01:13:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
01:13:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:13:00 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
01:13:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
01:13:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
01:13:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
01:13:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
01:13:00 Building wheels for collected packages: omero-cli-render
01:13:00 Building wheel for omero-cli-render (pyproject.toml): started
01:13:00 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:13:00 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=b31a6be7497fa061c48a46b378293e4d103dca5b4f6bc308e0fca8f7ef605b2b
01:13:00 Stored in directory: /tmp/pip-ephem-wheel-cache-igsagrhi/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
01:13:00 Successfully built omero-cli-render
01:13:01 Installing collected packages: omero-cli-render
01:13:01 Successfully installed omero-cli-render-0.8.2.dev0
01:13:01 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:13:01 Collecting omero-cli-duplicate
01:13:01 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-dqwacrks/omero-cli-duplicate_e86973836ff146939e84caa66397fcf6
01:13:01 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-dqwacrks/omero-cli-duplicate_e86973836ff146939e84caa66397fcf6
01:13:02 Running command git checkout -b merge_ci --track origin/merge_ci
01:13:02 Switched to a new branch 'merge_ci'
01:13:02 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:13:02 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit b00dda16dd2fbb24c2eed495f1db1f82e9581117
01:13:02 Installing build dependencies: started
01:13:04 Installing build dependencies: finished with status 'done'
01:13:04 Getting requirements to build wheel: started
01:13:04 Getting requirements to build wheel: finished with status 'done'
01:13:04 Preparing metadata (pyproject.toml): started
01:13:05 Preparing metadata (pyproject.toml): finished with status 'done'
01:13:05 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
01:13:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:13:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:13:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:13:05 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:13:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
01:13:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:13:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:13:05 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:13:05 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
01:13:05 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
01:13:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:13:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
01:13:05 Building wheels for collected packages: omero-cli-duplicate
01:13:05 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:13:05 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:13:05 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=2b4d74ae2a291cafdba04434508fbde295f932b79f9115ce64571089768a66aa
01:13:05 Stored in directory: /tmp/pip-ephem-wheel-cache-4wuc9v60/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:13:05 Successfully built omero-cli-duplicate
01:13:05 Installing collected packages: omero-cli-duplicate
01:13:05 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:13:05 + pip install omero-certificates
01:13:06 Collecting omero-certificates
01:13:06 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:13:06 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
01:13:06 Collecting distro==1.8.0 (from omero-certificates)
01:13:06 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:13:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:13:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:13:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:13:06 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:13:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
01:13:06 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:13:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:13:06 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:13:06 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
01:13:06 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
01:13:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:13:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
01:13:06 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:13:06 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:13:06 Installing collected packages: distro, omero-certificates
01:13:06 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:13:06 + for x in *.tar.gz
01:13:06 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:13:07 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:13:07 Installing build dependencies: started
01:13:09 Installing build dependencies: finished with status 'done'
01:13:09 Getting requirements to build wheel: started
01:13:09 Getting requirements to build wheel: finished with status 'done'
01:13:09 Preparing metadata (pyproject.toml): started
01:13:09 Preparing metadata (pyproject.toml): finished with status 'done'
01:13:09 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
01:13:09 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:13:09 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:13:09 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:13:09 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:13:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
01:13:09 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:13:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:13:09 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:13:09 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
01:13:09 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
01:13:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:13:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
01:13:09 Building wheels for collected packages: omero-dropbox
01:13:09 Building wheel for omero-dropbox (pyproject.toml): started
01:13:10 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:13:10 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=fb61d0bd9a737565d36b8a33b3dbfb80e6cfd026dd2d2e21d1ab00e4f8648d62
01:13:10 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
01:13:10 Successfully built omero-dropbox
01:13:10 Installing collected packages: omero-dropbox
01:13:10 Successfully installed omero-dropbox-5.7.1.dev0
01:13:10 + for x in *.tar.gz
01:13:10 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:13:10 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:13:11 Installing build dependencies: started
01:13:13 Installing build dependencies: finished with status 'done'
01:13:13 Getting requirements to build wheel: started
01:13:13 Getting requirements to build wheel: finished with status 'done'
01:13:13 Preparing metadata (pyproject.toml): started
01:13:14 Preparing metadata (pyproject.toml): finished with status 'done'
01:13:14 Building wheels for collected packages: omero_marshal
01:13:14 Building wheel for omero_marshal (pyproject.toml): started
01:13:15 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:13:15 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=4a90fdec9abc17bc9a6ca5b46693aa0075d18f01ba9664bfefdb25a4bf89446f
01:13:15 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
01:13:15 Successfully built omero_marshal
01:13:15 Installing collected packages: omero_marshal
01:13:15 Successfully installed omero_marshal-0.9.1.dev0
01:13:15 + for x in *.tar.gz
01:13:15 + pip install -U omero_py-5.19.6.dev0.tar.gz
01:13:16 Processing ./omero_py-5.19.6.dev0.tar.gz
01:13:16 Installing build dependencies: started
01:13:18 Installing build dependencies: finished with status 'done'
01:13:18 Getting requirements to build wheel: started
01:13:18 Getting requirements to build wheel: finished with status 'done'
01:13:18 Preparing metadata (pyproject.toml): started
01:13:19 Preparing metadata (pyproject.toml): finished with status 'done'
01:13:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
01:13:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
01:13:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
01:13:19 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
01:13:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0)
01:13:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
01:13:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
01:13:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
01:13:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
01:13:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2)
01:13:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
01:13:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
01:13:19 Building wheels for collected packages: omero-py
01:13:19 Building wheel for omero-py (pyproject.toml): started
01:13:20 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:13:20 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783136 sha256=c31344db80ec158665e863b3f9ed02408741f57554f7b4a9e618711f72706152
01:13:20 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
01:13:20 Successfully built omero-py
01:13:20 Installing collected packages: omero-py
01:13:20 Attempting uninstall: omero-py
01:13:20 Found existing installation: omero-py 5.19.5
01:13:20 Uninstalling omero-py-5.19.5:
01:13:21 Successfully uninstalled omero-py-5.19.5
01:13:23 Successfully installed omero-py-5.19.6.dev0
01:13:23 + for x in *.tar.gz
01:13:23 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
01:13:24 Processing ./omero_scripts-5.8.4.dev0.tar.gz
01:13:24 Installing build dependencies: started
01:13:25 Installing build dependencies: finished with status 'done'
01:13:25 Getting requirements to build wheel: started
01:13:26 Getting requirements to build wheel: finished with status 'done'
01:13:26 Preparing metadata (pyproject.toml): started
01:13:26 Preparing metadata (pyproject.toml): finished with status 'done'
01:13:26 Building wheels for collected packages: omero-scripts
01:13:26 Building wheel for omero-scripts (pyproject.toml): started
01:13:26 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:13:26 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=e1581fd38e56c17e80e7b9a62be06fa1eb8f10ae3d49e7b06f7020b61213f049
01:13:26 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
01:13:26 Successfully built omero-scripts
01:13:26 Installing collected packages: omero-scripts
01:13:26 Successfully installed omero-scripts-5.8.4.dev0
01:13:27 + for x in *.tar.gz
01:13:27 + pip install -U omero_web-5.27.3.dev0.tar.gz
01:13:27 Processing ./omero_web-5.27.3.dev0.tar.gz
01:13:28 Installing build dependencies: started
01:13:30 Installing build dependencies: finished with status 'done'
01:13:30 Getting requirements to build wheel: started
01:13:30 Getting requirements to build wheel: finished with status 'done'
01:13:30 Preparing metadata (pyproject.toml): started
01:13:30 Preparing metadata (pyproject.toml): finished with status 'done'
01:13:30 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
01:13:30 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0)
01:13:30 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:13:30 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0)
01:13:30 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
01:13:31 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0)
01:13:31 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:13:31 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0)
01:13:31 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:13:31 Collecting django-csp (from omero-web==5.27.3.dev0)
01:13:31 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:13:31 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0)
01:13:31 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
01:13:31 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0)
01:13:31 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:13:31 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
01:13:31 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0)
01:13:31 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
01:13:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
01:13:31 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
01:13:31 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
01:13:31 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:13:31 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
01:13:31 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
01:13:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
01:13:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
01:13:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
01:13:31 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
01:13:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
01:13:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
01:13:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
01:13:31 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
01:13:31 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:13:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2)
01:13:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
01:13:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
01:13:31 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:13:31 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:13:31 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:13:31 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
01:13:31 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:13:31 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
01:13:31 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:13:31 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:13:31 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
01:13:32 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:13:32 Building wheels for collected packages: omero-web
01:13:32 Building wheel for omero-web (pyproject.toml): started
01:13:33 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:13:33 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766665 sha256=012bee8ac77bfc7ec7c75b744bdcaf637cde2b6b9cb43a66b969905b699a5fd1
01:13:33 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b
01:13:33 Successfully built omero-web
01:13:33 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
01:13:37 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
01:13:37 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:13:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:13:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:13:37 --2024-09-24 01:13:37-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:13:38 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.108.133, ...
01:13:38 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
01:13:38 HTTP request sent, awaiting response... 200 OK
01:13:38 Length: 98962 (97K) [text/plain]
01:13:38 Saving to: ‘Figure_To_Pdf.py’
01:13:38
01:13:38 0K .......... .......... .......... .......... .......... 51% 2.36M 0s
01:13:38 50K .......... .......... .......... .......... ...... 100% 14.0M=0.02s
01:13:38
01:13:38 2024-09-24 01:13:38 (3.94 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962]
01:13:38
01:13:38 + chmod 755 Figure_To_Pdf.py
01:13:38 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:13:38 + omero config set omero.db.name OMERO-server
01:13:40 + omero config set omero.db.host pg
01:13:41 + omero config set omero.db.user postgres
01:13:43 + omero config set omero.data.dir /home/omero/omero-server-data
01:13:45 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:13:46 + omero config set omero.db.poolsize 25
01:13:48 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:13:49 + omero config set omero.security.trustStorePassword changeit
01:13:51 + omero config set omero.mail.config true
01:13:53 + omero config set omero.mail.from qa@openmicroscopy.org.uk
01:13:54 + omero config set omero.mail.host smtp.dundee.ac.uk
01:13:56 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:13:58 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:14:00 + omero certificates
01:14:01 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:14:01 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:14:02 + '[' false = true ']'
01:14:02 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:14:02 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:14:02 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:14:02 2024-09-24 01:14:02,231 [ omego.db] DEBUG dbcommand => upgrade
01:14:02 2024-09-24 01:14:02,231 [ omego.db] DEBUG dbhost => localhost
01:14:02 2024-09-24 01:14:02,231 [ omego.db] DEBUG dbname => OMERO-server
01:14:02 2024-09-24 01:14:02,231 [ omego.db] DEBUG dbpass => omero
01:14:02 2024-09-24 01:14:02,231 [ omego.db] DEBUG dbuser => omero
01:14:02 2024-09-24 01:14:02,231 [ omego.db] DEBUG rootpass => omero
01:14:02 2024-09-24 01:14:02,231 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:14:02 2024-09-24 01:14:02,231 [omego.extern] INFO Executing : omero version
01:14:03 OMERO.py version:
01:14:03 OMERO.server version:
01:14:03 5.6.3-510-5e284cc951-ice36
01:14:03 5.19.6.dev0
01:14:03 2024-09-24 01:14:03,867 [omego.extern] INFO Completed [1.636 s]
01:14:03 2024-09-24 01:14:03,868 [omego.extern] DEBUG Using omero CLI from omero
01:14:03 2024-09-24 01:14:03,868 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:14:03 2024-09-24 01:14:03,868 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:14:03 2024-09-24 01:14:03,868 [omego.extern] INFO Executing : omero config get --show-password
01:14:05 2024-09-24 01:14:05,423 [omego.extern] INFO Completed [1.555 s]
01:14:05 2024-09-24 01:14:05,424 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:14:05 2024-09-24 01:14:05,424 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:14:05 2024-09-24 01:14:05,600 [omego.extern] INFO Completed [0.176 s]
01:14:05 2024-09-24 01:14:05,600 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
01:14:05 2024-09-24 01:14:05,601 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
01:14:05
01:14:05 2024-09-24 01:14:05,601 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:14:05 2024-09-24 01:14:05,601 [omego.extern] INFO Executing : omero config get --show-password
01:14:07 2024-09-24 01:14:07,092 [omego.extern] INFO Completed [1.491 s]
01:14:07 2024-09-24 01:14:07,092 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:14:07 2024-09-24 01:14:07,092 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:14:07 2024-09-24 01:14:07,152 [omego.extern] INFO Completed [0.060 s]
01:14:07 2024-09-24 01:14:07,153 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.7") at port "5432".\n'
01:14:07 2024-09-24 01:14:07,153 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:14:07 2024-09-24 01:14:07,153 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:14:07 2024-09-24 01:14:07,153 [omego.extern] INFO Executing : omero config get --show-password
01:14:08 2024-09-24 01:14:08,708 [omego.extern] INFO Completed [1.555 s]
01:14:08 2024-09-24 01:14:08,709 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:14:08 2024-09-24 01:14:08,709 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:14:08 2024-09-24 01:14:08,787 [omego.extern] INFO Completed [0.078 s]
01:14:08 2024-09-24 01:14:08,787 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:14:08 2024-09-24 01:14:08,787 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
01:14:08 2024-09-24 01:14:08,789 [ omego.db] INFO Database is already at OMERO5.4__0
01:14:08 + export LANG=en_US.UTF-8
01:14:08 + LANG=en_US.UTF-8
01:14:08 + export LANGUAGE=en_US:en
01:14:08 + LANGUAGE=en_US:en
01:14:08 + export LC_ALL=en_US.UTF-8
01:14:08 + LC_ALL=en_US.UTF-8
01:14:08 + BUILD_ID=DONT_KILL_ME
01:14:08 + omero admin start
01:14:20 No descriptor given. Using etc/grid/default.xml
01:14:31 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:14:31 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:14:31 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:14:31 Waiting on startup. Use CTRL-C to exit
01:14:32 + omero admin waitup
01:14:33 Waiting on startup. Use CTRL-C to exit
01:14:33 + omero admin diagnostics
01:14:35
01:14:35 ================================================================================
01:14:35 OMERO Diagnostics (admin)
01:14:35 ================================================================================
01:14:35
01:14:35 Commands: java -version 11.0.24 (/usr/bin/java)
01:14:35 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:14:35 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:14:35 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:14:35 Commands: psql --version 16.4 (/usr/bin/psql)
01:14:35 Commands: openssl version 3.0.71 (/usr/bin/openssl)
01:14:35
01:14:35 Component: OMERO.py 5.19.6.dev0
01:14:35 Component: OMERO.server 5.6.3-510-5e284cc951-ice36
01:14:35
01:14:35 Server: icegridnode running
01:14:35 Server: Blitz-0 active (pid = 46021, enabled)
01:14:35 Server: Indexer-0 activating (enabled)
01:14:35 Server: OMERO.Glacier2 active (pid = 46045, enabled)
01:14:35 Server: OMERO.IceStorm active (pid = 46072, enabled)
01:14:35 Server: Processor-0 activating (enabled)
01:14:35 Server: Tables-0 activating (enabled)
01:14:35
01:14:35 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:14:35 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
01:14:35 Log files: DropBox.log n/a
01:14:35 Log files: FileServer.log n/a
01:14:35 Log files: Indexer-0.log 598 B
01:14:35 Log files: MonitorServer.log n/a
01:14:35 Log files: Processor-0.log 592 B
01:14:35 Log files: Tables-0.log 841 B
01:14:35 Log files: TestDropBox.log n/a
01:14:35 Log files: master.err 180 B
01:14:35 Log files: master.out 30.1 KB
01:14:35 Log files: Total size 0.05 MB
01:14:35
01:14:35
01:14:35 Environment:OMERO_HOME=(unset)
01:14:35 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:14:35 Environment:OMERO_NODE=(unset)
01:14:35 Environment:OMERO_MASTER=(unset)
01:14:35 Environment:OMERO_USERDIR=(unset)
01:14:35 Environment:OMERO_TMPDIR=(unset)
01:14:35 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:14:35 Environment:PYTHONPATH=(unset)
01:14:35 Environment:ICE_HOME=/opt/ice-3.6.5
01:14:35 Environment:LD_LIBRARY_PATH=(unset)
01:14:35 Environment:DYLD_LIBRARY_PATH=(unset)
01:14:35
01:14:35 OMERO SSL port:4064
01:14:35 OMERO TCP port:4063
01:14:35 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
01:14:35 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
01:14:35
01:14:35 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:35 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:35 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:35 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:14:35
01:14:35 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 24 September 2024 ba61c6ea5df39376cf012ed5aba34c9cdddfc01a
01:14:35 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 24 September 2024 ba61c6ea5df39376cf012ed5aba34c9cdddfc01a
01:14:35 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 24 September 2024 ba61c6ea5df39376cf012ed5aba34c9cdddfc01a
01:14:35 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 24 September 2024 2394d18e681bac33004b3367e94b85e70b63b35f
01:14:35 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 24 September 2024 2394d18e681bac33004b3367e94b85e70b63b35f
01:14:35 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 24 September 2024 2394d18e681bac33004b3367e94b85e70b63b35f
01:14:35 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 24 September 2024 2394d18e681bac33004b3367e94b85e70b63b35f
01:14:35 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 24 September 2024 2394d18e681bac33004b3367e94b85e70b63b35f
01:14:35 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 24 September 2024 2394d18e681bac33004b3367e94b85e70b63b35f
01:14:35 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
01:14:35 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
01:14:35 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
01:14:35 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
01:14:35 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
01:14:35 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
01:14:35 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
01:14:36 + deactivate
01:14:36 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:14:36 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:14:36 + export PATH
01:14:36 + unset _OLD_VIRTUAL_PATH
01:14:36 + '[' -n '' ']'
01:14:36 + '[' -n /bin/bash -o -n '' ']'
01:14:36 + hash -r
01:14:36 + '[' -n '' ']'
01:14:36 + unset VIRTUAL_ENV
01:14:36 + '[' '!' '' = nondestructive ']'
01:14:36 + unset -f deactivate
01:14:36 Finished: SUCCESS
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