Console Output

07:39:47 Started by user devspace
07:39:47 Running as SYSTEM
07:39:47 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
07:39:47 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4019724234591258359.sh
07:39:47 + source /home/settings.env
07:39:47 ++ OMERO_DB_HOST=pg
07:39:47 ++ OMERO_DB_USER=postgres
07:39:47 ++ OMERO_DB_PASS=
07:39:47 ++ OMERO_ROOT_PASS=omero
07:39:47 ++ OMERO_DATA_DIR=/OMERO
07:39:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:39:47 + OMERO_DB_NAME=OMERO-server
07:39:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
07:39:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:39:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:39:47 + OMERO_DATA_DIR=/home/omero/omero-server-data
07:39:47 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
07:39:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
07:39:47 ++ deactivate nondestructive
07:39:47 ++ '[' -n '' ']'
07:39:47 ++ '[' -n '' ']'
07:39:47 ++ '[' -n /bin/bash -o -n '' ']'
07:39:47 ++ hash -r
07:39:47 ++ '[' -n '' ']'
07:39:47 ++ unset VIRTUAL_ENV
07:39:47 ++ '[' '!' nondestructive = nondestructive ']'
07:39:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
07:39:47 ++ export VIRTUAL_ENV
07:39:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:39:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:39:47 ++ export PATH
07:39:47 ++ '[' -n '' ']'
07:39:47 ++ '[' -z '' ']'
07:39:47 ++ _OLD_VIRTUAL_PS1=
07:39:47 ++ PS1='(.venv3) '
07:39:47 ++ export PS1
07:39:47 ++ '[' -n /bin/bash -o -n '' ']'
07:39:47 ++ hash -r
07:39:47 + omero admin stop
07:39:48 Missing internal configuration. Pass --force-rewrite to the command.
07:39:48 + echo not running
07:39:48 not running
07:39:48 + sleep 5
07:39:53 + deactivate
07:39:53 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
07:39:53 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:39:53 + export PATH
07:39:53 + unset _OLD_VIRTUAL_PATH
07:39:53 + '[' -n '' ']'
07:39:53 + '[' -n /bin/bash -o -n '' ']'
07:39:53 + hash -r
07:39:53 + '[' -n '' ']'
07:39:53 + unset VIRTUAL_ENV
07:39:53 + '[' '!' '' = nondestructive ']'
07:39:53 + unset -f deactivate
07:39:53 + rm -rf /home/omero/workspace/OMERO-server/.venv3
07:39:54 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
07:39:57 + '[' true = true ']'
07:39:57 + dropdb -h pg -U postgres OMERO-server
07:39:57 dropdb: error: database removal failed: ERROR:  database "OMERO-server" does not exist
07:39:57 + echo 'First run or already exists'
07:39:57 First run or already exists
07:39:57 + rm -rf /home/omero/omero-server-data
07:39:57 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
07:39:59 Copied 1 artifact from "OMERO-build" build number 2
07:39:59 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 2
07:39:59 Copied 2 artifacts from "OMERO-build-build" build number 2
07:39:59 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16631752015202993374.sh
07:39:59 + source /home/settings.env
07:39:59 ++ OMERO_DB_HOST=pg
07:39:59 ++ OMERO_DB_USER=postgres
07:39:59 ++ OMERO_DB_PASS=
07:39:59 ++ OMERO_ROOT_PASS=omero
07:39:59 ++ OMERO_DATA_DIR=/OMERO
07:39:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:39:59 + OMERO_DB_NAME=OMERO-server
07:39:59 + OMERO_DATA_DIR=/home/omero/omero-server-data
07:39:59 + mkdir -p /home/omero/omero-server-data
07:39:59 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
07:39:59 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:39:59 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:39:59 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
07:39:59 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
07:39:59 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
07:39:59 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
07:39:59 ++ ls OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:39:59 + ZIP=OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:39:59 + '[' '!' -z '' ']'
07:39:59 + DIST=OMERO.server-5.6.3-435-12cd9157e9-ice36
07:39:59 + unzip OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:39:59 Archive:  OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/grid/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/profiles/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/error/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/janelia/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/ncsa_paledit/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/wcif/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/analysis_scripts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/annotation_scripts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/export_scripts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/figure_scripts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/import_scripts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/util_scripts/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/misc/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__1/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__10/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__11/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__2/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__3/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__4/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__5/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__6/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__7/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__8/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__9/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__4/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__5/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__6/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__7/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.1__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/t/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.3__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.4__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.0__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.1__1/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.2__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__1/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__2/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__3/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/
07:39:59    creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/var/
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/LICENSE.txt  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/backup.cfg  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/mail-senders.example  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/mail-server.example  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/build.properties  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/env.bat  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/env.sh  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/hibernate.properties  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/ice.config  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-cli.xml  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-indexing-cli.xml  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-indexing.xml  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback.xml  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/mime.types  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/node1.cfg  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/node2.cfg  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/omero.properties  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/profiles/psql  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/rollover.cfg  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/Windows.cfg  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/error/maintainance.html  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/README  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/default.xml  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/templates.xml  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/windefault.xml  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/ice.config  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/internal.cfg  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/master.cfg  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/robot.template  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/testdropbox.config  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/history.rst  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/OMEZarrReader.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/activation.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aggdesigner-algorithm.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aircompressor.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/annotations.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/antlr.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aopalliance.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/avatica-core.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/avatica-metrics.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/base.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-all.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-anim.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-awt-util.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-bridge.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-codec.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-constants.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-css.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-dom.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-ext.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-extension.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-gui-util.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-gvt.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-i18n.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-parser.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-rasterizer-ext.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-rasterizer.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-script.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-slideshow.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-squiggle-ext.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-squiggle.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svg-dom.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svgbrowser.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svggen.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svgpp.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svgrasterizer.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-swing.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-transcoder.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-ttf2svg.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-util.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-xml.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/btm.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/bufr.jar  
07:39:59   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/c3p0.jar  
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07:40:02   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/psql-header.sql  
07:40:02   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/schema.sql  
07:40:02   inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/views.sql  
07:40:02 + rm -f OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:40:02 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-435-12cd9157e9-ice36 /home/omero/workspace/OMERO-server/OMERO.server
07:40:02 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
07:40:02 ++ deactivate nondestructive
07:40:02 ++ '[' -n '' ']'
07:40:02 ++ '[' -n '' ']'
07:40:02 ++ '[' -n /bin/bash -o -n '' ']'
07:40:02 ++ hash -r
07:40:02 ++ '[' -n '' ']'
07:40:02 ++ unset VIRTUAL_ENV
07:40:02 ++ '[' '!' nondestructive = nondestructive ']'
07:40:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
07:40:02 ++ export VIRTUAL_ENV
07:40:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:40:02 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:40:02 ++ export PATH
07:40:02 ++ '[' -n '' ']'
07:40:02 ++ '[' -z '' ']'
07:40:02 ++ _OLD_VIRTUAL_PS1=
07:40:02 ++ PS1='(.venv3) '
07:40:02 ++ export PS1
07:40:02 ++ '[' -n /bin/bash -o -n '' ']'
07:40:02 ++ hash -r
07:40:02 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
07:40:02 Collecting zeroc-ice==3.6.5
07:40:03   Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
07:40:04 Installing collected packages: zeroc-ice
07:40:05 Successfully installed zeroc-ice-3.6.5
07:40:05 WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
07:40:05 You should consider upgrading via the '/home/omero/workspace/OMERO-server/.venv3/bin/python3 -m pip install --upgrade pip' command.
07:40:05 + pip install -U pip future
07:40:05 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
07:40:05 Collecting pip
07:40:05   Using cached pip-24.0-py3-none-any.whl (2.1 MB)
07:40:05 Collecting future
07:40:05   Using cached future-1.0.0-py3-none-any.whl (491 kB)
07:40:06 Installing collected packages: pip, future
07:40:06   Attempting uninstall: pip
07:40:06     Found existing installation: pip 21.2.3
07:40:06     Uninstalling pip-21.2.3:
07:40:06       Successfully uninstalled pip-21.2.3
07:40:07 Successfully installed future-1.0.0 pip-24.0
07:40:07 + pip install markdown
07:40:08 Collecting markdown
07:40:08   Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
07:40:08 Collecting importlib-metadata>=4.4 (from markdown)
07:40:08   Using cached importlib_metadata-7.0.2-py3-none-any.whl.metadata (4.6 kB)
07:40:08 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
07:40:08   Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
07:40:08 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
07:40:08 Using cached importlib_metadata-7.0.2-py3-none-any.whl (24 kB)
07:40:08 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
07:40:08 Installing collected packages: zipp, importlib-metadata, markdown
07:40:08 Successfully installed importlib-metadata-7.0.2 markdown-3.6 zipp-3.18.1
07:40:08 + pip install reportlab
07:40:09 Collecting reportlab
07:40:09   Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB)
07:40:09 Collecting pillow>=9.0.0 (from reportlab)
07:40:09   Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
07:40:09 Collecting chardet (from reportlab)
07:40:09   Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
07:40:09 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB)
07:40:09 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
07:40:09 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
07:40:09 Installing collected packages: pillow, chardet, reportlab
07:40:10 Successfully installed chardet-5.2.0 pillow-10.2.0 reportlab-4.1.0
07:40:10 + pip install omego
07:40:11 Collecting omego
07:40:11   Using cached omego-0.7.0-py3-none-any.whl
07:40:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
07:40:11 Collecting yaclifw>=0.1.1 (from omego)
07:40:11   Using cached yaclifw-0.2.0-py3-none-any.whl
07:40:11 Collecting six (from yaclifw>=0.1.1->omego)
07:40:11   Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
07:40:11 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
07:40:11 Installing collected packages: six, yaclifw, omego
07:40:11 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
07:40:11 + pip install tables
07:40:12 Collecting tables
07:40:12   Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
07:40:12 Collecting numpy>=1.19.0 (from tables)
07:40:12   Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
07:40:12 Collecting numexpr>=2.6.2 (from tables)
07:40:12   Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
07:40:12 Collecting packaging (from tables)
07:40:12   Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
07:40:12 Collecting py-cpuinfo (from tables)
07:40:12   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
07:40:12 Collecting blosc2>=2.3.0 (from tables)
07:40:12   Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
07:40:12 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
07:40:12   Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
07:40:12 Collecting msgpack (from blosc2>=2.3.0->tables)
07:40:12   Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
07:40:12 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
07:40:12 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
07:40:12 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
07:40:12 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
07:40:12 Using cached packaging-24.0-py3-none-any.whl (53 kB)
07:40:12 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
07:40:12 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
07:40:12 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
07:40:13 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
07:40:15 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
07:40:16 + pip install jinja2
07:40:16 Collecting jinja2
07:40:16   Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
07:40:16 Collecting MarkupSafe>=2.0 (from jinja2)
07:40:16   Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
07:40:16 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
07:40:16 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
07:40:16 Installing collected packages: MarkupSafe, jinja2
07:40:16 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
07:40:16 + pip install omero-py
07:40:17 Collecting omero-py
07:40:17   Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
07:40:17 Collecting urllib3<2 (from omero-py)
07:40:17   Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
07:40:17 Collecting appdirs (from omero-py)
07:40:17   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
07:40:17 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
07:40:17 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
07:40:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.2.0)
07:40:17 Collecting PyYAML (from omero-py)
07:40:17   Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
07:40:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
07:40:17 Collecting requests (from omero-py)
07:40:17   Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
07:40:17 Collecting portalocker (from omero-py)
07:40:17   Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
07:40:17 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
07:40:17   Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
07:40:17 Collecting idna<4,>=2.5 (from requests->omero-py)
07:40:17   Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
07:40:17 Collecting certifi>=2017.4.17 (from requests->omero-py)
07:40:17   Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
07:40:17 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
07:40:17 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
07:40:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
07:40:17 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
07:40:17 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
07:40:17 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
07:40:17 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
07:40:17 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
07:40:17 Using cached idna-3.6-py3-none-any.whl (61 kB)
07:40:18 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
07:40:20 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
07:40:20 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
07:40:20 Collecting omero-metadata
07:40:20   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-0kvrcvsu/omero-metadata_cf6b22eff7ca412681c692f61af62656
07:40:20   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-0kvrcvsu/omero-metadata_cf6b22eff7ca412681c692f61af62656
07:40:21   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b7565ded6846dd0245a39241b440e1a5be134210
07:40:21   Installing build dependencies: started
07:40:23   Installing build dependencies: finished with status 'done'
07:40:23   Getting requirements to build wheel: started
07:40:23   Getting requirements to build wheel: finished with status 'done'
07:40:23   Installing backend dependencies: started
07:40:24   Installing backend dependencies: finished with status 'done'
07:40:24   Preparing metadata (pyproject.toml): started
07:40:24   Preparing metadata (pyproject.toml): finished with status 'done'
07:40:24 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.0)
07:40:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
07:40:24 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
07:40:24 Collecting pandas (from omero-metadata)
07:40:24   Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
07:40:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
07:40:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
07:40:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
07:40:24 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
07:40:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.2.0)
07:40:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
07:40:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
07:40:24 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
07:40:24 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
07:40:24 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
07:40:24   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
07:40:24 Collecting pytz>=2020.1 (from pandas->omero-metadata)
07:40:24   Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
07:40:24 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
07:40:24   Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
07:40:24 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
07:40:25 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
07:40:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6)
07:40:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
07:40:25 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB)
07:40:25 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
07:40:25 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
07:40:25 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
07:40:25 Building wheels for collected packages: omero-metadata
07:40:25   Building wheel for omero-metadata (pyproject.toml): started
07:40:25   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
07:40:25   Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=fe0003616e4e6cba601a26fb6df1fa36d26fef03ac1d8e66a4ddbf574f568c71
07:40:25   Stored in directory: /tmp/pip-ephem-wheel-cache-fh0y58ng/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
07:40:25 Successfully built omero-metadata
07:40:25 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
07:40:30 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
07:40:30 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
07:40:30 Collecting omero-cli-render
07:40:30   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-rouoon65/omero-cli-render_d891625c060c41f3ba47ccfd05cbf70c
07:40:30   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-rouoon65/omero-cli-render_d891625c060c41f3ba47ccfd05cbf70c
07:40:31   Running command git checkout -b merge_ci --track origin/merge_ci
07:40:32   Switched to a new branch 'merge_ci'
07:40:32   branch 'merge_ci' set up to track 'origin/merge_ci'.
07:40:32   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 893d3c4d6403b666ac141e324f855c2b4175f247
07:40:32   Installing build dependencies: started
07:40:34   Installing build dependencies: finished with status 'done'
07:40:34   Getting requirements to build wheel: started
07:40:34   Getting requirements to build wheel: finished with status 'done'
07:40:34   Installing backend dependencies: started
07:40:35   Installing backend dependencies: finished with status 'done'
07:40:35   Preparing metadata (pyproject.toml): started
07:40:35   Preparing metadata (pyproject.toml): finished with status 'done'
07:40:35 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
07:40:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.0)
07:40:35 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
07:40:35 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
07:40:35 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
07:40:35 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
07:40:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.2.0)
07:40:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
07:40:35 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
07:40:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
07:40:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
07:40:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6)
07:40:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
07:40:35 Building wheels for collected packages: omero-cli-render
07:40:35   Building wheel for omero-cli-render (pyproject.toml): started
07:40:35   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
07:40:35   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=1ac4d05683febfb61cb48e8ee09756f153ae592d19e3634665422200cc788967
07:40:35   Stored in directory: /tmp/pip-ephem-wheel-cache-ssoysmhs/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
07:40:35 Successfully built omero-cli-render
07:40:35 Installing collected packages: omero-cli-render
07:40:35 Successfully installed omero-cli-render-0.8.1.dev0
07:40:35 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
07:40:36 Collecting omero-cli-duplicate
07:40:36   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-9vke0jbi/omero-cli-duplicate_ec20ef6c3d444d0b85520b216d599e0b
07:40:36   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-9vke0jbi/omero-cli-duplicate_ec20ef6c3d444d0b85520b216d599e0b
07:40:37   Running command git checkout -b merge_ci --track origin/merge_ci
07:40:37   Switched to a new branch 'merge_ci'
07:40:37   branch 'merge_ci' set up to track 'origin/merge_ci'.
07:40:37   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1bf3e75187fb609b30478610750cc394889da0b5
07:40:37   Installing build dependencies: started
07:40:39   Installing build dependencies: finished with status 'done'
07:40:39   Getting requirements to build wheel: started
07:40:39   Getting requirements to build wheel: finished with status 'done'
07:40:39   Installing backend dependencies: started
07:40:40   Installing backend dependencies: finished with status 'done'
07:40:40   Preparing metadata (pyproject.toml): started
07:40:40   Preparing metadata (pyproject.toml): finished with status 'done'
07:40:40 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.0)
07:40:40 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
07:40:40 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
07:40:40 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
07:40:40 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
07:40:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.2.0)
07:40:40 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
07:40:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
07:40:40 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
07:40:40 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
07:40:40 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
07:40:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6)
07:40:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
07:40:40 Building wheels for collected packages: omero-cli-duplicate
07:40:40   Building wheel for omero-cli-duplicate (pyproject.toml): started
07:40:40   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
07:40:40   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=13f0a3a722c8cd267e5e6334fe8e7efe789f286698beaf5793ba2ea317cf978b
07:40:40   Stored in directory: /tmp/pip-ephem-wheel-cache-4k1d1i6o/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
07:40:40 Successfully built omero-cli-duplicate
07:40:40 Installing collected packages: omero-cli-duplicate
07:40:40 Successfully installed omero-cli-duplicate-0.4.1.dev0
07:40:41 + pip install omero-certificates
07:40:41 Collecting omero-certificates
07:40:41   Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
07:40:41 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.0)
07:40:41 Collecting distro==1.8.0 (from omero-certificates)
07:40:41   Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
07:40:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
07:40:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
07:40:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
07:40:41 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
07:40:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.2.0)
07:40:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
07:40:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
07:40:41 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
07:40:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
07:40:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
07:40:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6)
07:40:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
07:40:41 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
07:40:41 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
07:40:41 Installing collected packages: distro, omero-certificates
07:40:41 Successfully installed distro-1.8.0 omero-certificates-0.3.2
07:40:41 + for x in *.tar.gz
07:40:41 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz
07:40:42 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
07:40:42   Installing build dependencies: started
07:40:43   Installing build dependencies: finished with status 'done'
07:40:43   Getting requirements to build wheel: started
07:40:44   Getting requirements to build wheel: finished with status 'done'
07:40:44   Installing backend dependencies: started
07:40:44   Installing backend dependencies: finished with status 'done'
07:40:44   Preparing metadata (pyproject.toml): started
07:40:45   Preparing metadata (pyproject.toml): finished with status 'done'
07:40:45 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.0)
07:40:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
07:40:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
07:40:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
07:40:45 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
07:40:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.2.0)
07:40:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
07:40:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
07:40:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
07:40:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
07:40:45 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
07:40:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6)
07:40:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
07:40:45 Building wheels for collected packages: omero-dropbox
07:40:45   Building wheel for omero-dropbox (pyproject.toml): started
07:40:45   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
07:40:45   Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=4525aee3b5ae34dac427ca06b4a9c7f4bb6f16c7ea22093d0d24068be99e9821
07:40:45   Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1
07:40:45 Successfully built omero-dropbox
07:40:45 Installing collected packages: omero-dropbox
07:40:45 Successfully installed omero-dropbox-5.6.3.dev0
07:40:45 + for x in *.tar.gz
07:40:45 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
07:40:46 Processing ./omero_marshal-0.9.1.dev0.tar.gz
07:40:46   Installing build dependencies: started
07:40:47   Installing build dependencies: finished with status 'done'
07:40:47   Getting requirements to build wheel: started
07:40:47   Getting requirements to build wheel: finished with status 'done'
07:40:47   Installing backend dependencies: started
07:40:48   Installing backend dependencies: finished with status 'done'
07:40:48   Preparing metadata (pyproject.toml): started
07:40:48   Preparing metadata (pyproject.toml): finished with status 'done'
07:40:48 Building wheels for collected packages: omero_marshal
07:40:48   Building wheel for omero_marshal (pyproject.toml): started
07:40:49   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
07:40:49   Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=c313fa16d325b2849470a375dc90561d1352df3721f08465701bd6922e58ac85
07:40:49   Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
07:40:49 Successfully built omero_marshal
07:40:49 Installing collected packages: omero_marshal
07:40:49 Successfully installed omero_marshal-0.9.1.dev0
07:40:49 + for x in *.tar.gz
07:40:49 + pip install -U omero-py-5.19.1.dev0.tar.gz
07:40:50 Processing ./omero-py-5.19.1.dev0.tar.gz
07:40:50   Installing build dependencies: started
07:40:51   Installing build dependencies: finished with status 'done'
07:40:51   Getting requirements to build wheel: started
07:40:52   Getting requirements to build wheel: finished with status 'done'
07:40:52   Installing backend dependencies: started
07:40:53   Installing backend dependencies: finished with status 'done'
07:40:53   Preparing metadata (pyproject.toml): started
07:40:53   Preparing metadata (pyproject.toml): finished with status 'done'
07:40:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
07:40:53 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
07:40:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
07:40:53 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
07:40:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
07:40:53 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
07:40:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
07:40:53 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
07:40:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
07:40:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
07:40:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
07:40:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
07:40:53 Building wheels for collected packages: omero-py
07:40:53   Building wheel for omero-py (pyproject.toml): started
07:40:54   Building wheel for omero-py (pyproject.toml): finished with status 'done'
07:40:54   Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781647 sha256=04916ea2fa4bec68c4a4901ce0ecdb983d2dd5f8dc6643cd788e9c06af51e22d
07:40:54   Stored in directory: /home/omero/.cache/pip/wheels/52/ce/ea/f5d1427ab67c2783e3f124f0ebf8311109c5ac331893a591ad
07:40:54 Successfully built omero-py
07:40:54 Installing collected packages: omero-py
07:40:54   Attempting uninstall: omero-py
07:40:54     Found existing installation: omero-py 5.19.0
07:40:54     Uninstalling omero-py-5.19.0:
07:40:55       Successfully uninstalled omero-py-5.19.0
07:40:56 Successfully installed omero-py-5.19.1.dev0
07:40:56 + for x in *.tar.gz
07:40:56 + pip install -U omero-scripts-5.8.1.dev0.tar.gz
07:40:57 Processing ./omero-scripts-5.8.1.dev0.tar.gz
07:40:57   Installing build dependencies: started
07:40:59   Installing build dependencies: finished with status 'done'
07:40:59   Getting requirements to build wheel: started
07:40:59   Getting requirements to build wheel: finished with status 'done'
07:40:59   Installing backend dependencies: started
07:41:00   Installing backend dependencies: finished with status 'done'
07:41:00   Preparing metadata (pyproject.toml): started
07:41:00   Preparing metadata (pyproject.toml): finished with status 'done'
07:41:00 Building wheels for collected packages: omero-scripts
07:41:00   Building wheel for omero-scripts (pyproject.toml): started
07:41:00   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
07:41:00   Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=1b5a2f27e122c3a1c2cdb05dfed3c707537e9b0f1f2b48a667deaf1f9b16a25d
07:41:00   Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf
07:41:00 Successfully built omero-scripts
07:41:00 Installing collected packages: omero-scripts
07:41:00 Successfully installed omero-scripts-5.8.1.dev0
07:41:00 + for x in *.tar.gz
07:41:00 + pip install -U omero-web-5.25.1.dev0.tar.gz
07:41:01 Processing ./omero-web-5.25.1.dev0.tar.gz
07:41:01   Installing build dependencies: started
07:41:03   Installing build dependencies: finished with status 'done'
07:41:03   Getting requirements to build wheel: started
07:41:03   Getting requirements to build wheel: finished with status 'done'
07:41:03   Installing backend dependencies: started
07:41:04   Installing backend dependencies: finished with status 'done'
07:41:04   Preparing metadata (pyproject.toml): started
07:41:04   Preparing metadata (pyproject.toml): finished with status 'done'
07:41:04 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
07:41:04 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
07:41:04   Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
07:41:04 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
07:41:04   Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
07:41:04 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
07:41:04   Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
07:41:04 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
07:41:04   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
07:41:04 Collecting django-csp (from omero-web==5.25.1.dev0)
07:41:04   Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
07:41:04 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
07:41:04   Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
07:41:04 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
07:41:04   Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
07:41:04 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
07:41:04 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
07:41:04 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
07:41:04 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
07:41:04 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
07:41:04 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
07:41:04   Using cached asgiref-3.7.2-py3-none-any.whl.metadata (9.2 kB)
07:41:05 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
07:41:05   Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
07:41:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
07:41:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
07:41:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
07:41:05 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
07:41:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
07:41:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
07:41:05 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
07:41:05 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
07:41:05   Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
07:41:05 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
07:41:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
07:41:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
07:41:05 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
07:41:05 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
07:41:05 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
07:41:05 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
07:41:05 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
07:41:05 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
07:41:05 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
07:41:05 Using cached asgiref-3.7.2-py3-none-any.whl (24 kB)
07:41:05 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
07:41:05 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
07:41:05 Building wheels for collected packages: omero-web
07:41:05   Building wheel for omero-web (pyproject.toml): started
07:41:06   Building wheel for omero-web (pyproject.toml): finished with status 'done'
07:41:06   Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769827 sha256=5644e8a702c145284377619e023e9d9ee0b597c771e1ea1bd4efb288e5732bbc
07:41:06   Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a
07:41:06 Successfully built omero-web
07:41:06 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
07:41:09 Successfully installed Django-4.2.11 asgiref-3.7.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
07:41:09 + omero config set omero.db.name OMERO-server
07:41:10 + omero config set omero.db.host pg
07:41:11 + omero config set omero.db.user postgres
07:41:13 + omero config set omero.data.dir /home/omero/omero-server-data
07:41:14 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
07:41:15 + omero config set omero.db.poolsize 25
07:41:17 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
07:41:18 + omero config set omero.security.trustStorePassword changeit
07:41:19 + omero config set omero.mail.config true
07:41:20 + omero certificates
07:41:22 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
07:41:22 certificates created: /home/omero/omero-server-data/certs/server.key /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
07:41:22 + '[' true = true ']'
07:41:22 + createdb -h pg -U postgres OMERO-server
07:41:23 + omego db init --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
07:41:23 2024-03-15 07:41:23,884 [omego.extern] INFO  Executing : omero version
07:41:24 OMERO.py version:
07:41:25 OMERO.server version:
07:41:25 5.6.3-435-12cd9157e9-ice36
07:41:25 5.19.1.dev0
07:41:25 2024-03-15 07:41:25,226 [omego.extern] INFO  Completed [1.342 s]
07:41:25 2024-03-15 07:41:25,227 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
07:41:25 2024-03-15 07:41:25,227 [omego.extern] INFO  Running [current environment]: omero config get --show-password
07:41:25 2024-03-15 07:41:25,227 [omego.extern] INFO  Executing : omero config get --show-password
07:41:26 2024-03-15 07:41:26,487 [omego.extern] INFO  Completed [1.261 s]
07:41:26 2024-03-15 07:41:26,488 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
07:41:26 2024-03-15 07:41:26,488 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
07:41:26 2024-03-15 07:41:26,540 [omego.extern] INFO  Completed [0.052 s]
07:41:26 2024-03-15 07:41:26,540 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.2
07:41:26 
07:41:26 2024-03-15 07:41:26,540 [omego.extern] INFO  Running [current environment]: omero config get --show-password
07:41:26 2024-03-15 07:41:26,540 [omego.extern] INFO  Executing : omero config get --show-password
07:41:27 2024-03-15 07:41:27,844 [omego.extern] INFO  Completed [1.304 s]
07:41:27 2024-03-15 07:41:27,844 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
07:41:27 2024-03-15 07:41:27,845 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
07:41:27 2024-03-15 07:41:27,857 [omego.extern] INFO  Completed [0.012 s]
07:41:27 2024-03-15 07:41:27,857 [    omego.db] INFO  Creating SQL: omero-20240315-074127-857318.sql
07:41:27 2024-03-15 07:41:27,857 [omego.extern] INFO  Running [current environment]: omero db script -f omero-20240315-074127-857318.sql   omero
07:41:27 2024-03-15 07:41:27,857 [omego.extern] INFO  Executing : omero db script -f omero-20240315-074127-857318.sql   omero
07:41:30 2024-03-15 07:41:30,731 [omego.extern] INFO  Completed [2.874 s]
07:41:30 2024-03-15 07:41:30,732 [    omego.db] INFO  Creating database using omero-20240315-074127-857318.sql
07:41:30 2024-03-15 07:41:30,732 [omego.extern] INFO  Running [current environment]: omero config get --show-password
07:41:30 2024-03-15 07:41:30,732 [omego.extern] INFO  Executing : omero config get --show-password
07:41:31 2024-03-15 07:41:31,987 [omego.extern] INFO  Completed [1.255 s]
07:41:31 2024-03-15 07:41:31,988 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
07:41:31 2024-03-15 07:41:31,988 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -f omero-20240315-074127-857318.sql
07:41:34 2024-03-15 07:41:34,370 [omego.extern] INFO  Completed [2.382 s]
07:41:34 2024-03-15 07:41:34,370 [    omego.db] WARNI stderr: b'psql:omero-20240315-074127-857318.sql:2842: NOTICE:  identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"\npsql:omero-20240315-074127-857318.sql:4712: NOTICE:  identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"\npsql:omero-20240315-074127-857318.sql:5697: NOTICE:  identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"\n'
07:41:34 + export LANG=en_US.UTF-8
07:41:34 + LANG=en_US.UTF-8
07:41:34 + export LANGUAGE=en_US:en
07:41:34 + LANGUAGE=en_US:en
07:41:34 + export LC_ALL=en_US.UTF-8
07:41:34 + LC_ALL=en_US.UTF-8
07:41:34 + BUILD_ID=DONT_KILL_ME
07:41:34 + omero admin start
07:41:43 No descriptor given. Using etc/grid/default.xml
07:41:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
07:41:53 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
07:41:53 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
07:41:53 Waiting on startup. Use CTRL-C to exit
07:41:53 + omero admin waitup
07:41:54 Waiting on startup. Use CTRL-C to exit
07:41:54 + omero admin diagnostics
07:41:56 
07:41:56 ================================================================================
07:41:56 OMERO Diagnostics (admin)
07:41:56 ================================================================================
07:41:56         
07:41:56 Commands:   java -version                  11.0.22   (/usr/bin/java)
07:41:56 Commands:   python -V                      3.9.18    (/home/omero/workspace/OMERO-server/.venv3/bin/python)
07:41:56 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
07:41:56 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
07:41:56 Commands:   psql --version                 16.2      (/usr/bin/psql)
07:41:56 Commands:   openssl version                3.0.71    (/usr/bin/openssl)
07:41:56 
07:41:56 Component:  OMERO.py                       5.19.1.dev0
07:41:56 Component:  OMERO.server                   5.6.3-435-12cd9157e9-ice36
07:41:56 
07:41:56 Server:     icegridnode                    running
07:41:56 Server:     Blitz-0                        active (pid = 4572, enabled)
07:41:56 Server:     DropBox                        activating (enabled)
07:41:56 Server:     FileServer                     active (pid = 4669, enabled)
07:41:56 Server:     Indexer-0                      activating (enabled)
07:41:56 Server:     MonitorServer                  active (pid = 4604, enabled)
07:41:56 Server:     OMERO.Glacier2                 active (pid = 4616, enabled)
07:41:56 Server:     OMERO.IceStorm                 active (pid = 4627, enabled)
07:41:56 Server:     PixelData-0                    activating (enabled)
07:41:56 Server:     Processor-0                    activating (enabled)
07:41:56 Server:     Tables-0                       activating (enabled)
07:41:56 Server:     TestDropBox                    inactive (enabled)
07:41:56 
07:41:56 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
07:41:56 Log files:  Blitz-0.log                    132.9 KB      errors=0    warnings=1   
07:41:56 Log files:  DropBox.log                    1.4 KB       
07:41:56 Log files:  FileServer.log                 114 B        
07:41:56 Log files:  Indexer-0.log                  598 B        
07:41:56 Log files:  MonitorServer.log              1.1 KB       
07:41:56 Log files:  PixelData-0.log                599 B        
07:41:56 Log files:  Processor-0.log                281 B        
07:41:56 Log files:  Tables-0.log                   281 B        
07:41:56 Log files:  TestDropBox.log                n/a
07:41:56 Log files:  master.err                     2.1 KB       
07:41:56 Log files:  master.out                     41.5 KB      
07:41:56 Log files:  Total size                     0.18 MB
07:41:56 
07:41:56 
07:41:56 Environment:OMERO_HOME=(unset)             
07:41:56 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
07:41:56 Environment:OMERO_NODE=(unset)             
07:41:56 Environment:OMERO_MASTER=(unset)           
07:41:56 Environment:OMERO_USERDIR=(unset)          
07:41:56 Environment:OMERO_TMPDIR=(unset)           
07:41:56 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
07:41:56 Environment:PYTHONPATH=(unset)             
07:41:56 Environment:ICE_HOME=/opt/ice-3.6.5        
07:41:56 Environment:LD_LIBRARY_PATH=(unset)        
07:41:56 Environment:DYLD_LIBRARY_PATH=(unset)      
07:41:56 
07:41:56 OMERO SSL port:4064                           
07:41:56 OMERO TCP port:4063                           
07:41:56 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
07:41:56 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
07:41:56 
07:41:56 JVM settings: Blitz-${index}                -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
07:41:56 JVM settings: Indexer-${index}              -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
07:41:56 JVM settings: PixelData-${index}            -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
07:41:56 JVM settings: Repository-${index}           -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
07:41:56 
07:41:56 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.0.0-SNAPSHOT	15 March 2024	947564c0e37abd393eecb3f1c1630261e59f4804
07:41:56 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.0.0-SNAPSHOT	15 March 2024	947564c0e37abd393eecb3f1c1630261e59f4804
07:41:56 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.0.0-SNAPSHOT	15 March 2024	947564c0e37abd393eecb3f1c1630261e59f4804
07:41:56 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.0.2-SNAPSHOT	15 March 2024	1bfae037496ac3907ba6f6fee82c5d14161060d2
07:41:56 Jar:        lib/server/ome-common.jar      OME Common Java	6.0.22-SNAPSHOT	15 March 2024	1bfae037496ac3907ba6f6fee82c5d14161060d2
07:41:56 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.3-SNAPSHOT	15 March 2024	1bfae037496ac3907ba6f6fee82c5d14161060d2
07:41:56 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.3-SNAPSHOT	15 March 2024	1bfae037496ac3907ba6f6fee82c5d14161060d2
07:41:56 Jar:        lib/server/ome-poi.jar         OME POI	5.3.9-SNAPSHOT	15 March 2024	1bfae037496ac3907ba6f6fee82c5d14161060d2
07:41:56 Jar:        lib/server/ome-xml.jar         OME XML library	6.3.5-SNAPSHOT	15 March 2024	1bfae037496ac3907ba6f6fee82c5d14161060d2
07:41:56 Jar:        lib/server/omero-blitz.jar     jar	5.7.3-SNAPSHOT		
07:41:56 Jar:        lib/server/omero-common.jar    jar	5.6.5-SNAPSHOT		
07:41:56 Jar:        lib/server/omero-gateway.jar   jar	5.9.1-SNAPSHOT		
07:41:56 Jar:        lib/server/omero-model.jar     jar	5.6.14-SNAPSHOT		
07:41:56 Jar:        lib/server/omero-renderer.jar  jar	5.5.16-SNAPSHOT		
07:41:56 Jar:        lib/server/omero-romio.jar     jar	5.7.6-SNAPSHOT		
07:41:56 Jar:        lib/server/omero-server.jar    jar	5.6.11-SNAPSHOT		
07:41:57 + deactivate
07:41:57 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
07:41:57 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:41:57 + export PATH
07:41:57 + unset _OLD_VIRTUAL_PATH
07:41:57 + '[' -n '' ']'
07:41:57 + '[' -n /bin/bash -o -n '' ']'
07:41:57 + hash -r
07:41:57 + '[' -n '' ']'
07:41:57 + unset VIRTUAL_ENV
07:41:57 + '[' '!' '' = nondestructive ']'
07:41:57 + unset -f deactivate
07:41:57 Finished: SUCCESS