12:05:48 Started by upstream project "Trigger" build number 7
12:05:48 originally caused by:
12:05:48 Started by user devspace
12:05:48 Running as SYSTEM
12:05:48 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
12:05:48 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8502776774707077361.sh
12:05:48 + source /home/settings.env
12:05:48 ++ OMERO_DB_HOST=pg
12:05:48 ++ OMERO_DB_USER=postgres
12:05:48 ++ OMERO_DB_PASS=
12:05:48 ++ OMERO_ROOT_PASS=omero
12:05:48 ++ OMERO_DATA_DIR=/OMERO
12:05:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:05:48 + OMERO_DB_NAME=OMERO-server
12:05:48 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:05:48 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:05:48 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:05:48 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:05:48 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
12:05:48 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
12:05:48 ++ deactivate nondestructive
12:05:48 ++ '[' -n '' ']'
12:05:48 ++ '[' -n '' ']'
12:05:48 ++ hash -r
12:05:48 ++ '[' -n '' ']'
12:05:48 ++ unset VIRTUAL_ENV
12:05:48 ++ unset VIRTUAL_ENV_PROMPT
12:05:48 ++ '[' '!' nondestructive = nondestructive ']'
12:05:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
12:05:48 ++ export VIRTUAL_ENV
12:05:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:05:48 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:05:48 ++ export PATH
12:05:48 ++ '[' -n '' ']'
12:05:48 ++ '[' -z '' ']'
12:05:48 ++ _OLD_VIRTUAL_PS1=
12:05:48 ++ PS1='(.venv3) '
12:05:48 ++ export PS1
12:05:48 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:05:48 ++ export VIRTUAL_ENV_PROMPT
12:05:48 ++ hash -r
12:05:48 + omero admin stop
12:05:49 Waiting on shutdown. Use CTRL-C to exit
12:05:49 .+ sleep 5
12:06:04 + deactivate
12:06:04 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:06:04 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:06:04 + export PATH
12:06:04 + unset _OLD_VIRTUAL_PATH
12:06:04 + '[' -n '' ']'
12:06:04 + hash -r
12:06:04 + '[' -n '' ']'
12:06:04 + unset VIRTUAL_ENV
12:06:04 + unset VIRTUAL_ENV_PROMPT
12:06:04 + '[' '!' '' = nondestructive ']'
12:06:04 + unset -f deactivate
12:06:04 + rm -rf /home/omero/workspace/OMERO-server/.venv3
12:06:05 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
12:06:08 + '[' false = true ']'
12:06:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
12:06:08 Skipping PURGE_DATA:CleanDbAndRepo
12:06:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
12:06:10 Copied 1 artifact from "OMERO-build" build number 3
12:06:10 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 3
12:06:10 Copied 2 artifacts from "OMERO-build-build" build number 6
12:06:10 [OMERO-server] $ /bin/bash -xe /tmp/jenkins18384530014989661827.sh
12:06:10 + source /home/settings.env
12:06:10 ++ OMERO_DB_HOST=pg
12:06:10 ++ OMERO_DB_USER=postgres
12:06:10 ++ OMERO_DB_PASS=
12:06:10 ++ OMERO_ROOT_PASS=omero
12:06:10 ++ OMERO_DATA_DIR=/OMERO
12:06:10 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:06:10 + OMERO_DB_NAME=OMERO-server
12:06:10 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:06:10 + mkdir -p /home/omero/omero-server-data
12:06:10 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:06:10 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:06:10 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:06:10 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:06:10 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:06:10 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:06:10 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:06:10 ++ ls OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:06:10 + ZIP=OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:06:10 + '[' '!' -z '' ']'
12:06:10 + DIST=OMERO.server-5.6.3-576-35efecc35f-ice36-b3
12:06:10 + unzip OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:06:10 Archive: OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/blitz/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/grid/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/profiles/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/error/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/grid/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/janelia/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/matplotlib/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/ncsa_paledit/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/seaborn/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/luts/wcif/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/analysis_scripts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/annotation_scripts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/export_scripts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/figure_scripts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/import_scripts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/scripts/omero/util_scripts/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/server/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/share/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/share/licenses/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/misc/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__1/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__10/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__11/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__2/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__3/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__4/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__5/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__6/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__7/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__8/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3A__9/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__4/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__5/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__6/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO3__7/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.1__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.2__0/t/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.3__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4.4__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO4__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.0__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.1__1/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.2__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__1/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__2/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__3/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/var/
12:06:10 creating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/var/tmp/
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/LICENSE.txt
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/backup.cfg
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/blitz/mail-senders.example
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/blitz/mail-server.example
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/build.properties
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/env.bat
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/env.sh
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/hibernate.properties
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/ice.config
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback-cli.xml
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback-indexing-cli.xml
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback-indexing.xml
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/logback.xml
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/mime.types
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/node1.cfg
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/node2.cfg
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/omero.properties
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/profiles/psql
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/rollover.cfg
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/Windows.cfg
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/error/maintainance.html
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/grid/README
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/grid/default.xml
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/grid/templates.xml
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/grid/windefault.xml
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/ice.config
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/internal.cfg
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/master.cfg
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/templates/robot.template
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/etc/testdropbox.config
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/history.rst
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/OMEZarrReader.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/accessors-smart.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/activation.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/aggdesigner-algorithm.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/aircompressor.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/antlr.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/aopalliance.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/apiguardian-api.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/asm.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/avatica-core.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/avatica-metrics.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/aws-java-sdk-core.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/aws-java-sdk-kms.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/aws-java-sdk-s3.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/base.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-anim.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-awt-util.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-bridge.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-codec.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-constants.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-css.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-dom.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-ext.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-gvt.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-i18n.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-parser.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-script.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-shared-resources.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-svg-dom.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-svggen.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-transcoder.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-util.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/batik-xml.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/btm.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/calcite-core.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/calcite-linq4j.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/cdm-core.jar
12:06:10 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/lib/client/checker-qual.jar
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12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/psql-footer.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/psql-header.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/schema.sql
12:06:12 inflating: OMERO.server-5.6.3-576-35efecc35f-ice36-b3/sql/psql/OMERO5.4__0/views.sql
12:06:12 + rm -f OMERO.server-5.6.3-576-35efecc35f-ice36-b3.zip
12:06:12 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-35efecc35f-ice36-b3 /home/omero/workspace/OMERO-server/OMERO.server
12:06:12 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
12:06:12 ++ deactivate nondestructive
12:06:12 ++ '[' -n '' ']'
12:06:12 ++ '[' -n '' ']'
12:06:12 ++ hash -r
12:06:12 ++ '[' -n '' ']'
12:06:12 ++ unset VIRTUAL_ENV
12:06:12 ++ unset VIRTUAL_ENV_PROMPT
12:06:12 ++ '[' '!' nondestructive = nondestructive ']'
12:06:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
12:06:12 ++ export VIRTUAL_ENV
12:06:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:06:12 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:06:12 ++ export PATH
12:06:12 ++ '[' -n '' ']'
12:06:12 ++ '[' -z '' ']'
12:06:12 ++ _OLD_VIRTUAL_PS1=
12:06:12 ++ PS1='(.venv3) '
12:06:12 ++ export PS1
12:06:12 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:06:12 ++ export VIRTUAL_ENV_PROMPT
12:06:12 ++ hash -r
12:06:12 + pip install -U pip
12:06:13 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
12:06:13 Collecting pip
12:06:13 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
12:06:13 Installing collected packages: pip
12:06:13 Attempting uninstall: pip
12:06:13 Found existing installation: pip 22.3.1
12:06:13 Uninstalling pip-22.3.1:
12:06:13 Successfully uninstalled pip-22.3.1
12:06:14 Successfully installed pip-25.3
12:06:14 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:06:14 Collecting zeroc-ice==3.6.5
12:06:15 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:06:17 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.1 MB/s 0:00:01
12:06:17 Installing collected packages: zeroc-ice
12:06:18 Successfully installed zeroc-ice-3.6.5
12:06:18 + pip install markdown
12:06:18 Collecting markdown
12:06:18 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
12:06:18 Using cached markdown-3.10-py3-none-any.whl (107 kB)
12:06:18 Installing collected packages: markdown
12:06:18 Successfully installed markdown-3.10
12:06:18 + pip install reportlab
12:06:19 Collecting reportlab
12:06:19 Using cached reportlab-4.4.6-py3-none-any.whl.metadata (1.7 kB)
12:06:19 Collecting pillow>=9.0.0 (from reportlab)
12:06:19 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
12:06:19 Collecting charset-normalizer (from reportlab)
12:06:19 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
12:06:19 Using cached reportlab-4.4.6-py3-none-any.whl (2.0 MB)
12:06:19 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
12:06:19 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
12:06:19 Installing collected packages: pillow, charset-normalizer, reportlab
12:06:20
12:06:20 Successfully installed charset-normalizer-3.4.4 pillow-12.0.0 reportlab-4.4.6
12:06:20 + pip install omego
12:06:21 Collecting omego
12:06:21 Using cached omego-0.7.0-py3-none-any.whl
12:06:21 Collecting future (from omego)
12:06:21 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:06:21 Collecting yaclifw>=0.1.1 (from omego)
12:06:21 Using cached yaclifw-0.2.0-py3-none-any.whl
12:06:21 Collecting six (from yaclifw>=0.1.1->omego)
12:06:21 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
12:06:21 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:06:21 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
12:06:21 Installing collected packages: six, future, yaclifw, omego
12:06:21
12:06:21 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
12:06:21 + pip install tables
12:06:22 Collecting tables
12:06:22 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
12:06:22 Collecting numpy>=1.20.0 (from tables)
12:06:22 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
12:06:22 Collecting numexpr>=2.6.2 (from tables)
12:06:22 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
12:06:22 Collecting packaging (from tables)
12:06:22 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
12:06:22 Collecting py-cpuinfo (from tables)
12:06:22 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
12:06:22 Collecting blosc2>=2.3.0 (from tables)
12:06:22 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
12:06:22 Collecting typing-extensions>=4.4.0 (from tables)
12:06:22 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
12:06:22 Collecting ndindex (from blosc2>=2.3.0->tables)
12:06:22 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
12:06:22 Collecting msgpack (from blosc2>=2.3.0->tables)
12:06:22 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
12:06:22 Collecting platformdirs (from blosc2>=2.3.0->tables)
12:06:22 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
12:06:22 Collecting requests (from blosc2>=2.3.0->tables)
12:06:22 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
12:06:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
12:06:22 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
12:06:22 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
12:06:23 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
12:06:23 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
12:06:23 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
12:06:23 Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB)
12:06:23 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
12:06:23 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
12:06:23 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
12:06:23 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:06:23 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
12:06:23 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
12:06:23 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
12:06:23 Using cached packaging-25.0-py3-none-any.whl (66 kB)
12:06:23 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
12:06:23 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
12:06:23 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
12:06:23 Using cached idna-3.11-py3-none-any.whl (71 kB)
12:06:23 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
12:06:23 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB)
12:06:23 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
12:06:26
12:06:26 Successfully installed blosc2-3.12.2 certifi-2025.11.12 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.3.5 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2
12:06:26 + pip install jinja2
12:06:26 Collecting jinja2
12:06:26 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
12:06:27 Collecting MarkupSafe>=2.0 (from jinja2)
12:06:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
12:06:27 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
12:06:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
12:06:27 Installing collected packages: MarkupSafe, jinja2
12:06:27
12:06:27 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
12:06:27 + pip install omero-py
12:06:27 Collecting omero-py
12:06:27 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
12:06:27 Collecting appdirs (from omero-py)
12:06:27 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
12:06:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
12:06:27 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.5)
12:06:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.0.0)
12:06:27 Collecting PyYAML (from omero-py)
12:06:27 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:06:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:06:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
12:06:27 Collecting portalocker (from omero-py)
12:06:27 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
12:06:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
12:06:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
12:06:27 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.2)
12:06:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.11.12)
12:06:27 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
12:06:27 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:06:27 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:06:27 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:06:27 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
12:06:29
12:06:29 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
12:06:29 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
12:06:30 Collecting omero-metadata
12:06:30 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-2vaevulm/omero-metadata_b4bac6e475a743efac6e94573c22e4a7
12:06:30 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-2vaevulm/omero-metadata_b4bac6e475a743efac6e94573c22e4a7
12:06:30 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 736c52b76a8a45b3c69bbc90c1c835a74910fcc7
12:06:30 Installing build dependencies: started
12:06:31 Installing build dependencies: finished with status 'done'
12:06:31 Getting requirements to build wheel: started
12:06:31 Getting requirements to build wheel: finished with status 'done'
12:06:31 Preparing metadata (pyproject.toml): started
12:06:32 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
12:06:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
12:06:32 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
12:06:32 Collecting pandas (from omero-metadata)
12:06:32 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
12:06:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
12:06:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
12:06:32 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.5)
12:06:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.0.0)
12:06:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
12:06:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
12:06:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
12:06:32 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
12:06:32 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
12:06:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
12:06:32 Collecting pytz>=2020.1 (from pandas->omero-metadata)
12:06:32 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
12:06:32 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
12:06:32 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
12:06:32 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
12:06:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
12:06:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
12:06:32 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.2)
12:06:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.11.12)
12:06:32 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
12:06:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
12:06:32 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
12:06:32 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB)
12:06:32 Building wheels for collected packages: omero-metadata
12:06:32 Building wheel for omero-metadata (pyproject.toml): started
12:06:32 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
12:06:32 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=78a8af500cc5ff5bc5a0ad197a6a8e7fdc0a9ee78636979a60c5268140c13aaa
12:06:32 Stored in directory: /tmp/pip-ephem-wheel-cache-b3zf4efy/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
12:06:32 Successfully built omero-metadata
12:06:32 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
12:06:37
12:06:37 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
12:06:37 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
12:06:37 Collecting omero-cli-render
12:06:37 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-7pha6f98/omero-cli-render_aa351c93593f48bbabab2b2fabc26df4
12:06:37 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-7pha6f98/omero-cli-render_aa351c93593f48bbabab2b2fabc26df4
12:06:38 Running command git checkout -b merge_ci --track origin/merge_ci
12:06:38 Switched to a new branch 'merge_ci'
12:06:38 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:06:38 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit abaf1c8856c638ec407166566a87e7ca7a3c303b
12:06:38 Installing build dependencies: started
12:06:39 Installing build dependencies: finished with status 'done'
12:06:39 Getting requirements to build wheel: started
12:06:39 Getting requirements to build wheel: finished with status 'done'
12:06:39 Preparing metadata (pyproject.toml): started
12:06:40 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
12:06:40 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
12:06:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
12:06:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
12:06:40 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.5)
12:06:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.0.0)
12:06:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
12:06:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
12:06:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
12:06:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
12:06:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
12:06:40 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.2)
12:06:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.11.12)
12:06:40 Building wheels for collected packages: omero-cli-render
12:06:40 Building wheel for omero-cli-render (pyproject.toml): started
12:06:40 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
12:06:40 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=11af7306feb95bdab99b718fc22eab369ea3b2f800d222d6b3e9d99542071485
12:06:40 Stored in directory: /tmp/pip-ephem-wheel-cache-40bd1dae/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
12:06:40 Successfully built omero-cli-render
12:06:40 Installing collected packages: omero-cli-render
12:06:40 Successfully installed omero-cli-render-0.8.2.dev0
12:06:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
12:06:40 Collecting omero-cli-duplicate
12:06:40 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-tkjbz6bn/omero-cli-duplicate_d2cc148c152c42a0aea9924215c7fb92
12:06:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-tkjbz6bn/omero-cli-duplicate_d2cc148c152c42a0aea9924215c7fb92
12:06:41 Running command git checkout -b merge_ci --track origin/merge_ci
12:06:42 Switched to a new branch 'merge_ci'
12:06:42 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:06:42 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 412759b9b431a0b918fc9e759b9fcf4dff196296
12:06:42 Installing build dependencies: started
12:06:43 Installing build dependencies: finished with status 'done'
12:06:43 Getting requirements to build wheel: started
12:06:43 Getting requirements to build wheel: finished with status 'done'
12:06:43 Preparing metadata (pyproject.toml): started
12:06:43 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:43 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
12:06:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
12:06:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
12:06:43 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.5)
12:06:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.0.0)
12:06:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
12:06:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
12:06:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
12:06:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
12:06:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
12:06:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
12:06:43 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.2)
12:06:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.11.12)
12:06:43 Building wheels for collected packages: omero-cli-duplicate
12:06:43 Building wheel for omero-cli-duplicate (pyproject.toml): started
12:06:44 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
12:06:44 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=47caea724f35b48a3aef47221761914cd9fc0662651213b39b33c6f093574b37
12:06:44 Stored in directory: /tmp/pip-ephem-wheel-cache-qtu0lki3/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
12:06:44 Successfully built omero-cli-duplicate
12:06:44 Installing collected packages: omero-cli-duplicate
12:06:44 Successfully installed omero-cli-duplicate-0.4.1.dev0
12:06:44 + pip install omero-certificates
12:06:44 Collecting omero-certificates
12:06:44 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
12:06:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
12:06:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
12:06:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
12:06:44 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.5)
12:06:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.0.0)
12:06:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
12:06:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
12:06:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
12:06:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
12:06:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
12:06:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
12:06:44 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.2)
12:06:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.11.12)
12:06:44 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
12:06:44 Installing collected packages: omero-certificates
12:06:44 Successfully installed omero-certificates-0.4.0
12:06:44 + for x in *.tar.gz
12:06:44 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
12:06:45 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
12:06:45 Installing build dependencies: started
12:06:45 Installing build dependencies: finished with status 'done'
12:06:45 Getting requirements to build wheel: started
12:06:46 Getting requirements to build wheel: finished with status 'done'
12:06:46 Preparing metadata (pyproject.toml): started
12:06:46 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:46 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
12:06:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
12:06:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
12:06:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.5)
12:06:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.0.0)
12:06:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
12:06:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
12:06:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
12:06:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
12:06:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
12:06:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
12:06:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
12:06:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
12:06:46 Building wheels for collected packages: omero-dropbox
12:06:46 Building wheel for omero-dropbox (pyproject.toml): started
12:06:46 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
12:06:46 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=43c7b33f2df1ef0f5350dec79466e43b48bd0e1757ca3947af16567900478d11
12:06:46 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
12:06:46 Successfully built omero-dropbox
12:06:46 Installing collected packages: omero-dropbox
12:06:46 Successfully installed omero-dropbox-5.7.1.dev0
12:06:46 + for x in *.tar.gz
12:06:46 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
12:06:47 Processing ./omero_marshal-0.9.2.dev0.tar.gz
12:06:47 Installing build dependencies: started
12:06:47 Installing build dependencies: finished with status 'done'
12:06:47 Getting requirements to build wheel: started
12:06:48 Getting requirements to build wheel: finished with status 'done'
12:06:48 Preparing metadata (pyproject.toml): started
12:06:48 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:48 Building wheels for collected packages: omero_marshal
12:06:48 Building wheel for omero_marshal (pyproject.toml): started
12:06:48 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
12:06:48 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=9af24784b53b77df4afecf7c0b75d2b98fd562322ceee49279ea14d1ee5b528a
12:06:48 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
12:06:48 Successfully built omero_marshal
12:06:48 Installing collected packages: omero_marshal
12:06:48 Successfully installed omero_marshal-0.9.2.dev0
12:06:48 + for x in *.tar.gz
12:06:48 + pip install -U omero_py-5.22.0.dev0.tar.gz
12:06:49 Processing ./omero_py-5.22.0.dev0.tar.gz
12:06:49 Installing build dependencies: started
12:06:50 Installing build dependencies: finished with status 'done'
12:06:50 Getting requirements to build wheel: started
12:06:50 Getting requirements to build wheel: finished with status 'done'
12:06:50 Preparing metadata (pyproject.toml): started
12:06:50 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
12:06:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
12:06:50 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.3.5)
12:06:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0)
12:06:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
12:06:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
12:06:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
12:06:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
12:06:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
12:06:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
12:06:50 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
12:06:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
12:06:50 Building wheels for collected packages: omero-py
12:06:50 Building wheel for omero-py (pyproject.toml): started
12:06:51 Building wheel for omero-py (pyproject.toml): finished with status 'done'
12:06:51 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=df93e3af2f99a9297482252dd8499c9cd3fd9f274a496dff41fdd1bd3417fba1
12:06:51 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
12:06:51 Successfully built omero-py
12:06:52 Installing collected packages: omero-py
12:06:52 Attempting uninstall: omero-py
12:06:52 Found existing installation: omero-py 5.21.3
12:06:52 Uninstalling omero-py-5.21.3:
12:06:52 Successfully uninstalled omero-py-5.21.3
12:06:54 Successfully installed omero-py-5.22.0.dev0
12:06:54 + for x in *.tar.gz
12:06:54 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
12:06:54 Processing ./omero_scripts-5.9.2.dev0.tar.gz
12:06:54 Installing build dependencies: started
12:06:55 Installing build dependencies: finished with status 'done'
12:06:55 Getting requirements to build wheel: started
12:06:55 Getting requirements to build wheel: finished with status 'done'
12:06:55 Preparing metadata (pyproject.toml): started
12:06:55 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:55 Building wheels for collected packages: omero-scripts
12:06:55 Building wheel for omero-scripts (pyproject.toml): started
12:06:56 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
12:06:56 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=85c7bca275572fa3766aeb4198ebbdc33e61b2305d0f59db2dbf623f8142c78f
12:06:56 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
12:06:56 Successfully built omero-scripts
12:06:56 Installing collected packages: omero-scripts
12:06:56 Successfully installed omero-scripts-5.9.2.dev0
12:06:56 + for x in *.tar.gz
12:06:56 + pip install -U omero_web-5.30.1.dev0.tar.gz
12:06:56 Processing ./omero_web-5.30.1.dev0.tar.gz
12:06:57 Installing build dependencies: started
12:06:57 Installing build dependencies: finished with status 'done'
12:06:57 Getting requirements to build wheel: started
12:06:58 Getting requirements to build wheel: finished with status 'done'
12:06:58 Preparing metadata (pyproject.toml): started
12:06:58 Preparing metadata (pyproject.toml): finished with status 'done'
12:06:58 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
12:06:58 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
12:06:58 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
12:06:58 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
12:06:58 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
12:06:58 Collecting django-pipeline (from omero-web==5.30.1.dev0)
12:06:58 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
12:06:58 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
12:06:58 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
12:06:58 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
12:06:58 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
12:06:58 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
12:06:58 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
12:06:58 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
12:06:58 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0)
12:06:58 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (2025.2)
12:06:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
12:06:58 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
12:06:58 Collecting importlib-resources (from omero-web==5.30.1.dev0)
12:06:58 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
12:06:58 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
12:06:58 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
12:06:58 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
12:06:59 Downloading sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
12:06:59 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
12:06:59 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
12:06:59 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.3.5)
12:06:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
12:06:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
12:06:59 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
12:06:59 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (65.5.1)
12:06:59 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
12:06:59 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
12:06:59 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
12:06:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
12:06:59 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
12:06:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
12:06:59 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
12:06:59 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
12:06:59 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
12:06:59 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
12:06:59 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
12:06:59 Downloading sqlparse-0.5.5-py3-none-any.whl (46 kB)
12:06:59 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
12:06:59 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
12:06:59 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
12:06:59 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
12:06:59 Building wheels for collected packages: omero-web
12:06:59 Building wheel for omero-web (pyproject.toml): started
12:07:00 Building wheel for omero-web (pyproject.toml): finished with status 'done'
12:07:00 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=1464fa9ce436ac9c4ab6f7eb1dd579bb48eafd7298bd9c51262540babc95faf1
12:07:00 Stored in directory: /home/omero/.cache/pip/wheels/55/56/8c/76994afd7450bff12c009b26528517ee8944f8f2e1a40edc6c
12:07:00 Successfully built omero-web
12:07:00 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
12:07:02
12:07:02 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
12:07:03 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:07:03 --2025-12-19 12:07:03-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:07:03 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.111.133, ...
12:07:03 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
12:07:03 HTTP request sent, awaiting response... 200 OK
12:07:03 Length: 126476 (124K) [text/plain]
12:07:03 Saving to: ‘Figure_To_Pdf.py’
12:07:03
12:07:03 0K .......... .......... .......... .......... .......... 40% 2.89M 0s
12:07:03 50K .......... .......... .......... .......... .......... 80% 8.49M 0s
12:07:03 100K .......... .......... ... 100% 3.32M=0.03s
12:07:03
12:07:03 2025-12-19 12:07:03 (4.08 MB/s) - ‘Figure_To_Pdf.py’ saved [126476/126476]
12:07:03
12:07:03 + chmod 755 Figure_To_Pdf.py
12:07:03 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
12:07:03 + omero config set omero.db.name OMERO-server
12:07:04 + omero config set omero.db.host pg
12:07:05 + omero config set omero.db.user postgres
12:07:06 + omero config set omero.data.dir /home/omero/omero-server-data
12:07:08 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
12:07:09 + omero config set omero.db.poolsize 25
12:07:10 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
12:07:11 + omero config set omero.security.trustStorePassword changeit
12:07:12 + omero config set omero.mail.config true
12:07:13 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
12:07:15 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
12:07:16 + omero certificates
12:07:17 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
12:07:17 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
12:07:17 + '[' false = true ']'
12:07:17 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
12:07:17 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
12:07:17 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
12:07:17 2025-12-19 12:07:17,523 [ omego.db] DEBUG dbcommand => upgrade
12:07:17 2025-12-19 12:07:17,523 [ omego.db] DEBUG dbhost => localhost
12:07:17 2025-12-19 12:07:17,523 [ omego.db] DEBUG dbname => OMERO-server
12:07:17 2025-12-19 12:07:17,523 [ omego.db] DEBUG dbpass => omero
12:07:17 2025-12-19 12:07:17,523 [ omego.db] DEBUG dbuser => omero
12:07:17 2025-12-19 12:07:17,523 [ omego.db] DEBUG rootpass => omero
12:07:17 2025-12-19 12:07:17,523 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
12:07:17 2025-12-19 12:07:17,523 [omego.extern] INFO Executing : omero version
12:07:18 OMERO.py version:
12:07:18 OMERO.server version:
12:07:18 5.6.3-576-35efecc35f-ice36-b3
12:07:18 5.22.0.dev0
12:07:18 2025-12-19 12:07:18,734 [omego.extern] INFO Completed [1.210 s]
12:07:18 2025-12-19 12:07:18,734 [omego.extern] DEBUG Using omero CLI from omero
12:07:18 2025-12-19 12:07:18,734 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
12:07:18 2025-12-19 12:07:18,734 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:07:18 2025-12-19 12:07:18,734 [omego.extern] INFO Executing : omero config get --show-password
12:07:19 2025-12-19 12:07:19,856 [omego.extern] INFO Completed [1.122 s]
12:07:19 2025-12-19 12:07:19,856 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:07:19 2025-12-19 12:07:19,856 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
12:07:19 2025-12-19 12:07:19,862 [omego.extern] INFO Completed [0.006 s]
12:07:19 2025-12-19 12:07:19,862 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
12:07:19 2025-12-19 12:07:19,862 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
12:07:19
12:07:19 2025-12-19 12:07:19,862 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:07:19 2025-12-19 12:07:19,862 [omego.extern] INFO Executing : omero config get --show-password
12:07:21 2025-12-19 12:07:21,003 [omego.extern] INFO Completed [1.141 s]
12:07:21 2025-12-19 12:07:21,003 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:07:21 2025-12-19 12:07:21,003 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
12:07:21 2025-12-19 12:07:21,013 [omego.extern] INFO Completed [0.009 s]
12:07:21 2025-12-19 12:07:21,013 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.12") at port "5432".\n'
12:07:21 2025-12-19 12:07:21,013 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
12:07:21 2025-12-19 12:07:21,013 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:07:21 2025-12-19 12:07:21,013 [omego.extern] INFO Executing : omero config get --show-password
12:07:22 2025-12-19 12:07:22,180 [omego.extern] INFO Completed [1.167 s]
12:07:22 2025-12-19 12:07:22,180 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:07:22 2025-12-19 12:07:22,180 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
12:07:22 2025-12-19 12:07:22,309 [omego.extern] INFO Completed [0.129 s]
12:07:22 2025-12-19 12:07:22,309 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
12:07:22 2025-12-19 12:07:22,309 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
12:07:22 2025-12-19 12:07:22,310 [ omego.db] INFO Database is already at OMERO5.4__0
12:07:22 + export LANG=en_US.UTF-8
12:07:22 + LANG=en_US.UTF-8
12:07:22 + export LANGUAGE=en_US:en
12:07:22 + LANGUAGE=en_US:en
12:07:22 + export LC_ALL=en_US.UTF-8
12:07:22 + LC_ALL=en_US.UTF-8
12:07:22 + BUILD_ID=DONT_KILL_ME
12:07:22 + omero admin start
12:07:27 No descriptor given. Using etc/grid/default.xml
12:07:34 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
12:07:34 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
12:07:34 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
12:07:34 Waiting on startup. Use CTRL-C to exit
12:07:35 + omero admin waitup
12:07:36 Waiting on startup. Use CTRL-C to exit
12:07:36 + omero admin diagnostics
12:07:38
12:07:38 ================================================================================
12:07:38 OMERO Diagnostics (admin)
12:07:38 ================================================================================
12:07:38
12:07:38 Commands: java -version 11.0.25 (/usr/bin/java)
12:07:38 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
12:07:38 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
12:07:38 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
12:07:38 Commands: psql --version 16.11 (/usr/bin/psql)
12:07:38 Commands: openssl version 3.5.11 (/usr/bin/openssl)
12:07:38
12:07:38 Component: OMERO.py 5.22.0.dev0
12:07:38 Component: OMERO.server 5.6.3-576-35efecc35f-ice36-b3
12:07:38
12:07:38 Server: icegridnode running
12:07:38 Server: Blitz-0 active (pid = 63538, enabled)
12:07:38 Server: Indexer-0 activating (enabled)
12:07:38 Server: OMERO.Glacier2 active (pid = 63569, enabled)
12:07:38 Server: OMERO.IceStorm active (pid = 63597, enabled)
12:07:38 Server: Processor-0 active (pid = 63576, enabled)
12:07:38 Server: Tables-0 active (pid = 63593, enabled)
12:07:38
12:07:38 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
12:07:38 Log files: Blitz-0.log 33.6 KB errors=0 warnings=1
12:07:38 Log files: DropBox.log n/a
12:07:38 Log files: FileServer.log n/a
12:07:38 Log files: Indexer-0.log 238 B
12:07:38 Log files: MonitorServer.log n/a
12:07:38 Log files: Processor-0.log 735 B
12:07:38 Log files: Tables-0.log 961 B
12:07:38 Log files: TestDropBox.log n/a
12:07:38 Log files: master.err empty
12:07:38 Log files: master.out 30.5 KB
12:07:38 Log files: Total size 0.07 MB
12:07:38
12:07:38
12:07:38 Environment:OMERO_HOME=(unset)
12:07:38 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:07:38 Environment:OMERO_NODE=(unset)
12:07:38 Environment:OMERO_MASTER=(unset)
12:07:38 Environment:OMERO_USERDIR=(unset)
12:07:38 Environment:OMERO_TMPDIR=(unset)
12:07:38 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:07:38 Environment:PYTHONPATH=(unset)
12:07:38 Environment:ICE_HOME=/opt/ice-3.6.5
12:07:38 Environment:LD_LIBRARY_PATH=(unset)
12:07:38 Environment:DYLD_LIBRARY_PATH=(unset)
12:07:38
12:07:38 OMERO SSL port:4064
12:07:38 OMERO TCP port:4063
12:07:38 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
12:07:38 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
12:07:38
12:07:38 JVM settings: Blitz-${index} -Xmx7200m
12:07:38 JVM settings: Indexer-${index} -Xmx4800m
12:07:38 JVM settings: PixelData-${index} -Xmx7200m
12:07:38 JVM settings: Repository-${index} -Xmx4800m
12:07:38
12:07:38 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 19 December 2025 c198fef2fdbc3237b80ab3ce091ca8b34a555d4c
12:07:38 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 19 December 2025 c198fef2fdbc3237b80ab3ce091ca8b34a555d4c
12:07:38 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 19 December 2025 c198fef2fdbc3237b80ab3ce091ca8b34a555d4c
12:07:38 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 19 December 2025 399e02b7f7606f61d462040351bb02ed0eee9897
12:07:38 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 19 December 2025 399e02b7f7606f61d462040351bb02ed0eee9897
12:07:38 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 19 December 2025 399e02b7f7606f61d462040351bb02ed0eee9897
12:07:38 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 19 December 2025 399e02b7f7606f61d462040351bb02ed0eee9897
12:07:38 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 19 December 2025 399e02b7f7606f61d462040351bb02ed0eee9897
12:07:38 Jar: lib/server/ome-xml.jar OME XML library 6.5.2-SNAPSHOT 19 December 2025 399e02b7f7606f61d462040351bb02ed0eee9897
12:07:38 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
12:07:38 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
12:07:38 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
12:07:38 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
12:07:38 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
12:07:38 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
12:07:38 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
12:07:38 + deactivate
12:07:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:07:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:07:38 + export PATH
12:07:38 + unset _OLD_VIRTUAL_PATH
12:07:38 + '[' -n '' ']'
12:07:38 + hash -r
12:07:38 + '[' -n '' ']'
12:07:38 + unset VIRTUAL_ENV
12:07:38 + unset VIRTUAL_ENV_PROMPT
12:07:38 + '[' '!' '' = nondestructive ']'
12:07:38 + unset -f deactivate
12:07:39 Finished: SUCCESS
