00:45:24 Started by upstream project "Trigger" build number 8
00:45:24 originally caused by:
00:45:24 Started by timer
00:45:24 Running as SYSTEM
00:45:24 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9263487373199303281.sh
00:45:24 + source /home/settings.env
00:45:24 ++ OMERO_DB_HOST=pg
00:45:24 ++ OMERO_DB_USER=postgres
00:45:24 ++ OMERO_DB_PASS=
00:45:24 ++ OMERO_ROOT_PASS=omero
00:45:24 ++ OMERO_DATA_DIR=/OMERO
00:45:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:24 + OMERO_DB_NAME=OMERO-server
00:45:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:24 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:24 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:24 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:24 ++ deactivate nondestructive
00:45:24 ++ '[' -n '' ']'
00:45:24 ++ '[' -n '' ']'
00:45:24 ++ hash -r
00:45:24 ++ '[' -n '' ']'
00:45:24 ++ unset VIRTUAL_ENV
00:45:24 ++ unset VIRTUAL_ENV_PROMPT
00:45:24 ++ '[' '!' nondestructive = nondestructive ']'
00:45:24 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:24 ++ export VIRTUAL_ENV
00:45:24 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:24 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:24 ++ export PATH
00:45:24 ++ '[' -n '' ']'
00:45:24 ++ '[' -z '' ']'
00:45:24 ++ _OLD_VIRTUAL_PS1=
00:45:24 ++ PS1='(.venv3) '
00:45:24 ++ export PS1
00:45:24 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:24 ++ export VIRTUAL_ENV_PROMPT
00:45:24 ++ hash -r
00:45:24 + omero admin stop
00:45:25 Waiting on shutdown. Use CTRL-C to exit
00:45:25 .+ sleep 5
00:45:40 + deactivate
00:45:40 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:40 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:40 + export PATH
00:45:40 + unset _OLD_VIRTUAL_PATH
00:45:40 + '[' -n '' ']'
00:45:40 + hash -r
00:45:40 + '[' -n '' ']'
00:45:40 + unset VIRTUAL_ENV
00:45:40 + unset VIRTUAL_ENV_PROMPT
00:45:40 + '[' '!' '' = nondestructive ']'
00:45:40 + unset -f deactivate
00:45:40 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:41 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:44 + '[' false = true ']'
00:45:44 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:44 Skipping PURGE_DATA:CleanDbAndRepo
00:45:44 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:46 Copied 1 artifact from "OMERO-build" build number 4
00:45:46 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 4
00:45:46 Copied 2 artifacts from "OMERO-build-build" build number 7
00:45:46 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2976971951861213336.sh
00:45:46 + source /home/settings.env
00:45:46 ++ OMERO_DB_HOST=pg
00:45:46 ++ OMERO_DB_USER=postgres
00:45:46 ++ OMERO_DB_PASS=
00:45:46 ++ OMERO_ROOT_PASS=omero
00:45:46 ++ OMERO_DATA_DIR=/OMERO
00:45:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:46 + OMERO_DB_NAME=OMERO-server
00:45:46 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:46 + mkdir -p /home/omero/omero-server-data
00:45:46 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:46 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:46 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:46 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:46 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:46 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:46 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:46 ++ ls OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4.zip
00:45:46 + ZIP=OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4.zip
00:45:46 + '[' '!' -z '' ']'
00:45:46 + DIST=OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4
00:45:46 + unzip OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4.zip
00:45:46 Archive: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4.zip
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/blitz/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/grid/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/profiles/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/error/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/grid/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/luts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/luts/janelia/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/luts/matplotlib/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/luts/ncsa_paledit/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/luts/seaborn/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/luts/wcif/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/omero/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/omero/analysis_scripts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/omero/annotation_scripts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/omero/export_scripts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/omero/figure_scripts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/omero/import_scripts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/scripts/omero/util_scripts/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/server/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/share/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/share/licenses/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/misc/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__1/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__10/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__11/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__2/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__3/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__4/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__5/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__6/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__7/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__8/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3A__9/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3__4/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3__5/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3__6/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO3__7/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO4.1__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO4.2__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO4.2__0/t/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO4.3__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO4.4__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO4__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.0__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.1__1/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.2__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.3__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4DEV__1/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4DEV__2/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4DEV__3/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/var/
00:45:46 creating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/var/tmp/
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/LICENSE.txt
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/backup.cfg
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/blitz/mail-senders.example
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/blitz/mail-server.example
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/build.properties
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/env.bat
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/env.sh
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/hibernate.properties
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/ice.config
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/logback-cli.xml
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/logback-indexing-cli.xml
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/logback-indexing.xml
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/logback.xml
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/mime.types
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/node1.cfg
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/node2.cfg
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/omero.properties
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/profiles/psql
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/rollover.cfg
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/Windows.cfg
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/error/maintainance.html
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/grid/README
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/grid/default.xml
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/grid/templates.xml
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/grid/windefault.xml
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/ice.config
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/internal.cfg
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/master.cfg
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/templates/robot.template
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/etc/testdropbox.config
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/history.rst
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/OMEZarrReader.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/accessors-smart.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/activation.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/aggdesigner-algorithm.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/aircompressor.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/antlr.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/aopalliance.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/apiguardian-api.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/asm.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/avatica-core.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/avatica-metrics.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/aws-java-sdk-core.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/aws-java-sdk-kms.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/aws-java-sdk-s3.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/base.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-anim.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-awt-util.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-bridge.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-codec.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-constants.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-css.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-dom.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-ext.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-gvt.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-i18n.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-parser.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-script.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-shared-resources.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-svg-dom.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-svggen.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-transcoder.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-util.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/batik-xml.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/btm.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/calcite-core.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/calcite-linq4j.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/cdm-core.jar
00:45:46 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/lib/client/checker-qual.jar
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00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/psql-header.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/schema.sql
00:45:48 inflating: OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4/sql/psql/OMERO5.4__0/views.sql
00:45:48 + rm -f OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4.zip
00:45:48 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-5cdf5cd473-ice36-b4 /home/omero/workspace/OMERO-server/OMERO.server
00:45:48 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:48 ++ deactivate nondestructive
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ hash -r
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ unset VIRTUAL_ENV
00:45:48 ++ unset VIRTUAL_ENV_PROMPT
00:45:48 ++ '[' '!' nondestructive = nondestructive ']'
00:45:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:48 ++ export VIRTUAL_ENV
00:45:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:48 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:48 ++ export PATH
00:45:48 ++ '[' -n '' ']'
00:45:48 ++ '[' -z '' ']'
00:45:48 ++ _OLD_VIRTUAL_PS1=
00:45:48 ++ PS1='(.venv3) '
00:45:48 ++ export PS1
00:45:48 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:48 ++ export VIRTUAL_ENV_PROMPT
00:45:48 ++ hash -r
00:45:48 + pip install -U pip
00:45:48 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:49 Collecting pip
00:45:49 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
00:45:49 Installing collected packages: pip
00:45:49 Attempting uninstall: pip
00:45:49 Found existing installation: pip 22.3.1
00:45:49 Uninstalling pip-22.3.1:
00:45:49 Successfully uninstalled pip-22.3.1
00:45:50 Successfully installed pip-25.3
00:45:50 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:50 Collecting zeroc-ice==3.6.5
00:45:50 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.7 MB/s 0:00:02
00:45:53 Installing collected packages: zeroc-ice
00:45:54 Successfully installed zeroc-ice-3.6.5
00:45:54 + pip install markdown
00:45:54 Collecting markdown
00:45:54 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
00:45:54 Using cached markdown-3.10-py3-none-any.whl (107 kB)
00:45:54 Installing collected packages: markdown
00:45:54 Successfully installed markdown-3.10
00:45:54 + pip install reportlab
00:45:55 Collecting reportlab
00:45:55 Using cached reportlab-4.4.6-py3-none-any.whl.metadata (1.7 kB)
00:45:55 Collecting pillow>=9.0.0 (from reportlab)
00:45:55 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:55 Collecting charset-normalizer (from reportlab)
00:45:55 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:55 Using cached reportlab-4.4.6-py3-none-any.whl (2.0 MB)
00:45:55 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:55 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:55 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:56
00:45:56 Successfully installed charset-normalizer-3.4.4 pillow-12.0.0 reportlab-4.4.6
00:45:56 + pip install omego
00:45:56 Collecting omego
00:45:56 Using cached omego-0.7.0-py3-none-any.whl
00:45:56 Collecting future (from omego)
00:45:56 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:56 Collecting yaclifw>=0.1.1 (from omego)
00:45:56 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:56 Collecting six (from yaclifw>=0.1.1->omego)
00:45:56 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:56 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:56 Installing collected packages: six, future, yaclifw, omego
00:45:57
00:45:57 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:45:57 + pip install tables
00:45:57 Collecting tables
00:45:57 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:45:57 Collecting numpy>=1.20.0 (from tables)
00:45:57 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:45:58 Collecting numexpr>=2.6.2 (from tables)
00:45:58 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:58 Collecting packaging (from tables)
00:45:58 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
00:45:58 Collecting py-cpuinfo (from tables)
00:45:58 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:58 Collecting blosc2>=2.3.0 (from tables)
00:45:58 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
00:45:58 Collecting typing-extensions>=4.4.0 (from tables)
00:45:58 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:45:58 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:58 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:58 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:58 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:58 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:45:58 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
00:45:58 Collecting requests (from blosc2>=2.3.0->tables)
00:45:58 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:58 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:58 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:58 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:58 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
00:45:58 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:58 Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB)
00:45:58 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:45:58 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
00:45:58 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:58 Using cached numpy-2.3.5-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:45:58 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:45:58 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:58 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:58 Using cached packaging-25.0-py3-none-any.whl (66 kB)
00:45:58 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
00:45:58 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:58 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:58 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:58 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
00:45:58 Using cached certifi-2025.11.12-py3-none-any.whl (159 kB)
00:45:58 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:46:02
00:46:02 Successfully installed blosc2-3.12.2 certifi-2025.11.12 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.3.5 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2
00:46:02 + pip install jinja2
00:46:02 Collecting jinja2
00:46:02 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:46:02 Collecting MarkupSafe>=2.0 (from jinja2)
00:46:02 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:46:02 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:46:02 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:46:02 Installing collected packages: MarkupSafe, jinja2
00:46:02
00:46:02 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:46:02 + pip install omero-py
00:46:03 Collecting omero-py
00:46:03 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:46:03 Collecting appdirs (from omero-py)
00:46:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:46:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:46:03 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.5)
00:46:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.0.0)
00:46:03 Collecting PyYAML (from omero-py)
00:46:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:46:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:46:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:46:03 Collecting portalocker (from omero-py)
00:46:03 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:46:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:46:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:46:03 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.2)
00:46:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.11.12)
00:46:03 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:46:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:46:03 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:46:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:46:03 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:46:05
00:46:05 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:46:05 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:46:05 Collecting omero-metadata
00:46:05 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-80_jm1xl/omero-metadata_5fc696c1b9264363982397acb008b8f9
00:46:05 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-80_jm1xl/omero-metadata_5fc696c1b9264363982397acb008b8f9
00:46:06 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 7f88f695afaf01edeeb4db5f6d84b963b0497257
00:46:06 Installing build dependencies: started
00:46:07 Installing build dependencies: finished with status 'done'
00:46:07 Getting requirements to build wheel: started
00:46:07 Getting requirements to build wheel: finished with status 'done'
00:46:07 Preparing metadata (pyproject.toml): started
00:46:07 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:07 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:46:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:46:07 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:46:08 Collecting pandas (from omero-metadata)
00:46:08 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
00:46:08 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:08 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.5)
00:46:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.0.0)
00:46:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:46:08 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:46:08 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:46:08 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:08 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:46:08 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:08 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:46:08 Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB)
00:46:08 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:46:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:46:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:46:08 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.2)
00:46:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.11.12)
00:46:08 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
00:46:08 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:08 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:08 Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB)
00:46:08 Building wheels for collected packages: omero-metadata
00:46:08 Building wheel for omero-metadata (pyproject.toml): started
00:46:08 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:08 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=a83556886d1ea5c60664082b15a8a00d7edeb10e3b42e1541069e2af64733d54
00:46:08 Stored in directory: /tmp/pip-ephem-wheel-cache-w3sxd_t1/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:46:08 Successfully built omero-metadata
00:46:08 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:46:13
00:46:13 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3
00:46:13 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:13 Collecting omero-cli-render
00:46:13 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-0uss8tyf/omero-cli-render_ca14ecf382344892a0366fd34d5f5dc3
00:46:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-0uss8tyf/omero-cli-render_ca14ecf382344892a0366fd34d5f5dc3
00:46:14 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:14 Switched to a new branch 'merge_ci'
00:46:14 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:14 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 7e2454a658d304dde878b6ebc14bbb023ae0ab18
00:46:14 Installing build dependencies: started
00:46:15 Installing build dependencies: finished with status 'done'
00:46:15 Getting requirements to build wheel: started
00:46:15 Getting requirements to build wheel: finished with status 'done'
00:46:15 Preparing metadata (pyproject.toml): started
00:46:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:15 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:46:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:15 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.5)
00:46:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.0.0)
00:46:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:16 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.2)
00:46:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.11.12)
00:46:16 Building wheels for collected packages: omero-cli-render
00:46:16 Building wheel for omero-cli-render (pyproject.toml): started
00:46:16 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:16 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=57b6842f8b8271f4aaf7036e0528e6f36377e8d346f965244f3669e2198ea741
00:46:16 Stored in directory: /tmp/pip-ephem-wheel-cache-2lmowzp1/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:16 Successfully built omero-cli-render
00:46:16 Installing collected packages: omero-cli-render
00:46:16 Successfully installed omero-cli-render-0.8.2.dev0
00:46:16 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:16 Collecting omero-cli-duplicate
00:46:16 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-ovkeifau/omero-cli-duplicate_f9781a75cba040429cab9d7cc3f4be31
00:46:16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-ovkeifau/omero-cli-duplicate_f9781a75cba040429cab9d7cc3f4be31
00:46:18 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:18 Switched to a new branch 'merge_ci'
00:46:18 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:18 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit dc37c5a44c422932635e80f4e41016abe23885b5
00:46:18 Installing build dependencies: started
00:46:19 Installing build dependencies: finished with status 'done'
00:46:19 Getting requirements to build wheel: started
00:46:19 Getting requirements to build wheel: finished with status 'done'
00:46:19 Preparing metadata (pyproject.toml): started
00:46:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:20 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:46:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:20 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.5)
00:46:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.0.0)
00:46:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.2)
00:46:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.11.12)
00:46:20 Building wheels for collected packages: omero-cli-duplicate
00:46:20 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:20 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:20 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=bfe341091d4d8c10be780440d4e7fcae7e5b385a1ebf7bc194827239d3d74996
00:46:20 Stored in directory: /tmp/pip-ephem-wheel-cache-srf9oe_4/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:20 Successfully built omero-cli-duplicate
00:46:20 Installing collected packages: omero-cli-duplicate
00:46:20 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:20 + pip install omero-certificates
00:46:20 Collecting omero-certificates
00:46:20 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:20 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:46:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:20 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.5)
00:46:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.0.0)
00:46:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.2)
00:46:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.11.12)
00:46:20 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:21 Installing collected packages: omero-certificates
00:46:21 Successfully installed omero-certificates-0.4.0
00:46:21 + for x in *.tar.gz
00:46:21 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:21 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:21 Installing build dependencies: started
00:46:22 Installing build dependencies: finished with status 'done'
00:46:22 Getting requirements to build wheel: started
00:46:22 Getting requirements to build wheel: finished with status 'done'
00:46:22 Preparing metadata (pyproject.toml): started
00:46:22 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:22 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:46:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:22 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.5)
00:46:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.0.0)
00:46:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
00:46:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
00:46:22 Building wheels for collected packages: omero-dropbox
00:46:22 Building wheel for omero-dropbox (pyproject.toml): started
00:46:22 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:22 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=d0ae85f3b8e505e75d86f313451b161debf304de6cee52c8e5085cb645e6938f
00:46:22 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:22 Successfully built omero-dropbox
00:46:23 Installing collected packages: omero-dropbox
00:46:23 Successfully installed omero-dropbox-5.7.1.dev0
00:46:23 + for x in *.tar.gz
00:46:23 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:23 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:23 Installing build dependencies: started
00:46:24 Installing build dependencies: finished with status 'done'
00:46:24 Getting requirements to build wheel: started
00:46:24 Getting requirements to build wheel: finished with status 'done'
00:46:24 Preparing metadata (pyproject.toml): started
00:46:24 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:24 Building wheels for collected packages: omero_marshal
00:46:24 Building wheel for omero_marshal (pyproject.toml): started
00:46:25 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:25 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=6b568beef096bc724246bf6a76577de151462f74b9f0b23999eabc10d8da47fb
00:46:25 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:25 Successfully built omero_marshal
00:46:25 Installing collected packages: omero_marshal
00:46:25 Successfully installed omero_marshal-0.9.2.dev0
00:46:25 + for x in *.tar.gz
00:46:25 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:46:25 Processing ./omero_py-5.22.0.dev0.tar.gz
00:46:25 Installing build dependencies: started
00:46:26 Installing build dependencies: finished with status 'done'
00:46:26 Getting requirements to build wheel: started
00:46:27 Getting requirements to build wheel: finished with status 'done'
00:46:27 Preparing metadata (pyproject.toml): started
00:46:27 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:46:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:46:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.3.5)
00:46:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.0.0)
00:46:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:46:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:46:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:46:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:46:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:46:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:46:27 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
00:46:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
00:46:27 Building wheels for collected packages: omero-py
00:46:27 Building wheel for omero-py (pyproject.toml): started
00:46:28 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:28 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=cdebecfa5e2eee56947c3d90f6f6d76767354ac64ef7bdb83c4e0ed3af9b0d27
00:46:28 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:46:28 Successfully built omero-py
00:46:28 Installing collected packages: omero-py
00:46:28 Attempting uninstall: omero-py
00:46:28 Found existing installation: omero-py 5.21.3
00:46:28 Uninstalling omero-py-5.21.3:
00:46:28 Successfully uninstalled omero-py-5.21.3
00:46:31 Successfully installed omero-py-5.22.0.dev0
00:46:31 + for x in *.tar.gz
00:46:31 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
00:46:31 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:46:31 Installing build dependencies: started
00:46:32 Installing build dependencies: finished with status 'done'
00:46:32 Getting requirements to build wheel: started
00:46:32 Getting requirements to build wheel: finished with status 'done'
00:46:32 Preparing metadata (pyproject.toml): started
00:46:33 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:33 Building wheels for collected packages: omero-scripts
00:46:33 Building wheel for omero-scripts (pyproject.toml): started
00:46:33 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:33 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=934e61d21b9afe7c8a976ea7318fd06a23bc67b6d953f4c882a6980b20f3a486
00:46:33 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
00:46:33 Successfully built omero-scripts
00:46:33 Installing collected packages: omero-scripts
00:46:33 Successfully installed omero-scripts-5.9.2.dev0
00:46:33 + for x in *.tar.gz
00:46:33 + pip install -U omero_web-5.30.1.dev0.tar.gz
00:46:33 Processing ./omero_web-5.30.1.dev0.tar.gz
00:46:34 Installing build dependencies: started
00:46:34 Installing build dependencies: finished with status 'done'
00:46:34 Getting requirements to build wheel: started
00:46:35 Getting requirements to build wheel: finished with status 'done'
00:46:35 Preparing metadata (pyproject.toml): started
00:46:35 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:35 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
00:46:35 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
00:46:35 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:46:35 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
00:46:35 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
00:46:35 Collecting django-pipeline (from omero-web==5.30.1.dev0)
00:46:35 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:35 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
00:46:35 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:35 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
00:46:35 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:46:35 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
00:46:35 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:46:35 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
00:46:35 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.0.0)
00:46:35 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (2025.2)
00:46:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
00:46:35 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
00:46:35 Collecting importlib-resources (from omero-web==5.30.1.dev0)
00:46:35 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:36 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:46:36 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:46:36 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:46:36 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
00:46:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
00:46:36 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.3.5)
00:46:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
00:46:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
00:46:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
00:46:36 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (65.5.1)
00:46:36 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
00:46:36 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:46:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
00:46:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
00:46:36 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
00:46:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
00:46:36 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:36 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
00:46:36 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:46:36 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:46:36 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:46:36 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:36 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:46:36 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:36 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:36 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:46:36 Building wheels for collected packages: omero-web
00:46:36 Building wheel for omero-web (pyproject.toml): started
00:46:37 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:37 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=b2560222521581abfe5c37b885e7f5a8ec6fab552a01d9301771ea46e124c759
00:46:37 Stored in directory: /home/omero/.cache/pip/wheels/55/56/8c/76994afd7450bff12c009b26528517ee8944f8f2e1a40edc6c
00:46:37 Successfully built omero-web
00:46:37 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:39
00:46:39 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
00:46:40 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:40 --2025-12-20 00:46:40-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:40 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.111.133, ...
00:46:40 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:46:40 HTTP request sent, awaiting response... 200 OK
00:46:40 Length: 126476 (124K) [text/plain]
00:46:40 Saving to: ‘Figure_To_Pdf.py’
00:46:40
00:46:40 0K .......... .......... .......... .......... .......... 40% 3.34M 0s
00:46:40 50K .......... .......... .......... .......... .......... 80% 13.5M 0s
00:46:40 100K .......... .......... ... 100% 8.04M=0.02s
00:46:40
00:46:40 2025-12-20 00:46:40 (5.72 MB/s) - ‘Figure_To_Pdf.py’ saved [126476/126476]
00:46:40
00:46:40 + chmod 755 Figure_To_Pdf.py
00:46:40 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:40 + omero config set omero.db.name OMERO-server
00:46:41 + omero config set omero.db.host pg
00:46:42 + omero config set omero.db.user postgres
00:46:44 + omero config set omero.data.dir /home/omero/omero-server-data
00:46:45 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:46:46 + omero config set omero.db.poolsize 25
00:46:47 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:46:48 + omero config set omero.security.trustStorePassword changeit
00:46:49 + omero config set omero.mail.config true
00:46:50 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:46:51 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:46:53 + omero certificates
00:46:54 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:46:54 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:46:54 + '[' false = true ']'
00:46:54 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:46:54 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:46:54 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:46:54 2025-12-20 00:46:54,491 [ omego.db] DEBUG dbcommand => upgrade
00:46:54 2025-12-20 00:46:54,491 [ omego.db] DEBUG dbhost => localhost
00:46:54 2025-12-20 00:46:54,491 [ omego.db] DEBUG dbname => OMERO-server
00:46:54 2025-12-20 00:46:54,491 [ omego.db] DEBUG dbpass => omero
00:46:54 2025-12-20 00:46:54,491 [ omego.db] DEBUG dbuser => omero
00:46:54 2025-12-20 00:46:54,491 [ omego.db] DEBUG rootpass => omero
00:46:54 2025-12-20 00:46:54,491 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:46:54 2025-12-20 00:46:54,491 [omego.extern] INFO Executing : omero version
00:46:55 OMERO.py version:
00:46:55 OMERO.server version:
00:46:55 5.6.3-576-5cdf5cd473-ice36-b4
00:46:55 5.22.0.dev0
00:46:55 2025-12-20 00:46:55,682 [omego.extern] INFO Completed [1.190 s]
00:46:55 2025-12-20 00:46:55,682 [omego.extern] DEBUG Using omero CLI from omero
00:46:55 2025-12-20 00:46:55,682 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:46:55 2025-12-20 00:46:55,682 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:55 2025-12-20 00:46:55,682 [omego.extern] INFO Executing : omero config get --show-password
00:46:56 2025-12-20 00:46:56,850 [omego.extern] INFO Completed [1.168 s]
00:46:56 2025-12-20 00:46:56,850 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:56 2025-12-20 00:46:56,850 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:46:56 2025-12-20 00:46:56,904 [omego.extern] INFO Completed [0.053 s]
00:46:56 2025-12-20 00:46:56,904 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:46:56 2025-12-20 00:46:56,904 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:46:56
00:46:56 2025-12-20 00:46:56,904 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:56 2025-12-20 00:46:56,904 [omego.extern] INFO Executing : omero config get --show-password
00:46:58 2025-12-20 00:46:58,050 [omego.extern] INFO Completed [1.146 s]
00:46:58 2025-12-20 00:46:58,050 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:58 2025-12-20 00:46:58,050 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:46:58 2025-12-20 00:46:58,060 [omego.extern] INFO Completed [0.009 s]
00:46:58 2025-12-20 00:46:58,060 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.12") at port "5432".\n'
00:46:58 2025-12-20 00:46:58,060 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:46:58 2025-12-20 00:46:58,060 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:58 2025-12-20 00:46:58,060 [omego.extern] INFO Executing : omero config get --show-password
00:46:59 2025-12-20 00:46:59,212 [omego.extern] INFO Completed [1.152 s]
00:46:59 2025-12-20 00:46:59,212 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:59 2025-12-20 00:46:59,212 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:46:59 2025-12-20 00:46:59,273 [omego.extern] INFO Completed [0.061 s]
00:46:59 2025-12-20 00:46:59,273 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:46:59 2025-12-20 00:46:59,274 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:46:59 2025-12-20 00:46:59,275 [ omego.db] INFO Database is already at OMERO5.4__0
00:46:59 + export LANG=en_US.UTF-8
00:46:59 + LANG=en_US.UTF-8
00:46:59 + export LANGUAGE=en_US:en
00:46:59 + LANGUAGE=en_US:en
00:46:59 + export LC_ALL=en_US.UTF-8
00:46:59 + LC_ALL=en_US.UTF-8
00:46:59 + BUILD_ID=DONT_KILL_ME
00:46:59 + omero admin start
00:47:03 No descriptor given. Using etc/grid/default.xml
00:47:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:13 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:13 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:13 Waiting on startup. Use CTRL-C to exit
00:47:13 + omero admin waitup
00:47:14 Waiting on startup. Use CTRL-C to exit
00:47:14 + omero admin diagnostics
00:47:15
00:47:15 ================================================================================
00:47:15 OMERO Diagnostics (admin)
00:47:15 ================================================================================
00:47:15
00:47:15 Commands: java -version 11.0.25 (/usr/bin/java)
00:47:15 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:15 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:15 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:15 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:15 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:15
00:47:15 Component: OMERO.py 5.22.0.dev0
00:47:15 Component: OMERO.server 5.6.3-576-5cdf5cd473-ice36-b4
00:47:15
00:47:15 Server: icegridnode running
00:47:15 Server: Blitz-0 active (pid = 76145, enabled)
00:47:15 Server: Indexer-0 activating (enabled)
00:47:15 Server: OMERO.Glacier2 active (pid = 76174, enabled)
00:47:15 Server: OMERO.IceStorm active (pid = 76198, enabled)
00:47:15 Server: Processor-0 active (pid = 76181, enabled)
00:47:15 Server: Tables-0 active (pid = 76202, enabled)
00:47:15
00:47:15 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:15 Log files: Blitz-0.log 33.2 KB errors=0 warnings=1
00:47:15 Log files: DropBox.log n/a
00:47:15 Log files: FileServer.log n/a
00:47:15 Log files: Indexer-0.log 238 B
00:47:15 Log files: MonitorServer.log n/a
00:47:15 Log files: Processor-0.log 735 B
00:47:15 Log files: Tables-0.log 961 B
00:47:15 Log files: TestDropBox.log n/a
00:47:15 Log files: master.err empty
00:47:15 Log files: master.out 30.5 KB
00:47:15 Log files: Total size 0.07 MB
00:47:15
00:47:15
00:47:15 Environment:OMERO_HOME=(unset)
00:47:15 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:15 Environment:OMERO_NODE=(unset)
00:47:15 Environment:OMERO_MASTER=(unset)
00:47:15 Environment:OMERO_USERDIR=(unset)
00:47:15 Environment:OMERO_TMPDIR=(unset)
00:47:15 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:15 Environment:PYTHONPATH=(unset)
00:47:15 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:15 Environment:LD_LIBRARY_PATH=(unset)
00:47:15 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:15
00:47:15 OMERO SSL port:4064
00:47:15 OMERO TCP port:4063
00:47:15 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:15 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:15
00:47:15 JVM settings: Blitz-${index} -Xmx7200m
00:47:15 JVM settings: Indexer-${index} -Xmx4800m
00:47:15 JVM settings: PixelData-${index} -Xmx7200m
00:47:15 JVM settings: Repository-${index} -Xmx4800m
00:47:15
00:47:15 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 20 December 2025 19cdb5d7860db57d4c95389dae29d524a6994d0f
00:47:15 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 20 December 2025 19cdb5d7860db57d4c95389dae29d524a6994d0f
00:47:15 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 20 December 2025 19cdb5d7860db57d4c95389dae29d524a6994d0f
00:47:15 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 20 December 2025 f3b3167a45af67ef4e2722d62140e900de094b4b
00:47:15 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 20 December 2025 f3b3167a45af67ef4e2722d62140e900de094b4b
00:47:15 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 20 December 2025 f3b3167a45af67ef4e2722d62140e900de094b4b
00:47:15 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 20 December 2025 f3b3167a45af67ef4e2722d62140e900de094b4b
00:47:15 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 20 December 2025 f3b3167a45af67ef4e2722d62140e900de094b4b
00:47:15 Jar: lib/server/ome-xml.jar OME XML library 6.5.2-SNAPSHOT 20 December 2025 f3b3167a45af67ef4e2722d62140e900de094b4b
00:47:15 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:47:15 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:47:15 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
00:47:15 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:47:15 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:47:15 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:47:15 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:47:16 + deactivate
00:47:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:16 + export PATH
00:47:16 + unset _OLD_VIRTUAL_PATH
00:47:16 + '[' -n '' ']'
00:47:16 + hash -r
00:47:16 + '[' -n '' ']'
00:47:16 + unset VIRTUAL_ENV
00:47:16 + unset VIRTUAL_ENV_PROMPT
00:47:16 + '[' '!' '' = nondestructive ']'
00:47:16 + unset -f deactivate
00:47:16 Finished: SUCCESS
