01:18:56 Started by upstream project "Trigger" build number 352
01:18:56 originally caused by:
01:18:56 Started by timer
01:18:56 Running as SYSTEM
01:18:56 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:18:57 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16667418954882208584.sh
01:18:58 + source /home/settings.env
01:18:58 ++ OMERO_DB_HOST=pg
01:18:58 ++ OMERO_DB_USER=postgres
01:18:58 ++ OMERO_DB_PASS=
01:18:58 ++ OMERO_ROOT_PASS=omero
01:18:58 ++ OMERO_DATA_DIR=/OMERO
01:18:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:18:58 + OMERO_DB_NAME=OMERO-server
01:18:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:18:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:18:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:18:58 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:18:58 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:18:58 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:18:58 ++ deactivate nondestructive
01:18:58 ++ '[' -n '' ']'
01:18:58 ++ '[' -n '' ']'
01:18:58 ++ '[' -n /bin/bash -o -n '' ']'
01:18:58 ++ hash -r
01:18:58 ++ '[' -n '' ']'
01:18:58 ++ unset VIRTUAL_ENV
01:18:58 ++ '[' '!' nondestructive = nondestructive ']'
01:18:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:18:58 ++ export VIRTUAL_ENV
01:18:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:18:58 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:18:58 ++ export PATH
01:18:58 ++ '[' -n '' ']'
01:18:58 ++ '[' -z '' ']'
01:18:58 ++ _OLD_VIRTUAL_PS1=
01:18:58 ++ PS1='(.venv3) '
01:18:58 ++ export PS1
01:18:58 ++ '[' -n /bin/bash -o -n '' ']'
01:18:58 ++ hash -r
01:18:58 + omero admin stop
01:19:23 Waiting on shutdown. Use CTRL-C to exit
01:19:23 .+ sleep 5
01:19:38 + deactivate
01:19:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:19:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:38 + export PATH
01:19:38 + unset _OLD_VIRTUAL_PATH
01:19:38 + '[' -n '' ']'
01:19:38 + '[' -n /bin/bash -o -n '' ']'
01:19:38 + hash -r
01:19:38 + '[' -n '' ']'
01:19:38 + unset VIRTUAL_ENV
01:19:38 + '[' '!' '' = nondestructive ']'
01:19:38 + unset -f deactivate
01:19:38 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:19:42 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
01:19:47 + '[' false = true ']'
01:19:47 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:19:47 Skipping PURGE_DATA:CleanDbAndRepo
01:19:47 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.1-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.28.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:20:07 Copied 1 artifact from "OMERO-build" build number 301
01:20:08 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 297
01:20:08 Copied 2 artifacts from "OMERO-build-build" build number 310
01:20:08 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15390895694729689750.sh
01:20:08 + source /home/settings.env
01:20:08 ++ OMERO_DB_HOST=pg
01:20:08 ++ OMERO_DB_USER=postgres
01:20:08 ++ OMERO_DB_PASS=
01:20:08 ++ OMERO_ROOT_PASS=omero
01:20:08 ++ OMERO_DATA_DIR=/OMERO
01:20:08 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:20:08 + OMERO_DB_NAME=OMERO-server
01:20:08 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:20:08 + mkdir -p /home/omero/omero-server-data
01:20:08 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:20:08 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:20:08 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:20:08 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:20:08 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:20:08 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:20:08 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:20:08 ++ ls OMERO.server-5.6.3-531-d65edd4968-ice36.zip
01:20:08 + ZIP=OMERO.server-5.6.3-531-d65edd4968-ice36.zip
01:20:08 + '[' '!' -z '' ']'
01:20:08 + DIST=OMERO.server-5.6.3-531-d65edd4968-ice36
01:20:08 + unzip OMERO.server-5.6.3-531-d65edd4968-ice36.zip
01:20:08 Archive: OMERO.server-5.6.3-531-d65edd4968-ice36.zip
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/blitz/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/grid/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/profiles/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/error/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/grid/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/luts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/luts/janelia/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/luts/matplotlib/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/luts/ncsa_paledit/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/luts/seaborn/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/luts/wcif/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/omero/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/omero/analysis_scripts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/omero/annotation_scripts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/omero/export_scripts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/omero/figure_scripts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/omero/import_scripts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/scripts/omero/util_scripts/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/server/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/share/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/share/licenses/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/misc/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__1/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__10/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__11/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__2/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__3/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__4/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__5/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__6/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__7/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__8/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3A__9/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3__4/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3__5/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3__6/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO3__7/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO4.1__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO4.2__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO4.2__0/t/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO4.3__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO4.4__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO4__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.0__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.1__1/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.2__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.3__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4DEV__1/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4DEV__2/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4DEV__3/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/
01:20:08 creating: OMERO.server-5.6.3-531-d65edd4968-ice36/var/
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/LICENSE.txt
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/backup.cfg
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/blitz/mail-senders.example
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/blitz/mail-server.example
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/build.properties
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/env.bat
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/env.sh
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/hibernate.properties
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/ice.config
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/logback-cli.xml
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/logback-indexing-cli.xml
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/logback-indexing.xml
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/logback.xml
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/mime.types
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/node1.cfg
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/node2.cfg
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/omero.properties
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/profiles/psql
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/rollover.cfg
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/Windows.cfg
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/error/maintainance.html
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/grid/README
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/grid/default.xml
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/grid/templates.xml
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/grid/windefault.xml
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/ice.config
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/internal.cfg
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/master.cfg
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/templates/robot.template
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/etc/testdropbox.config
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/history.rst
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/OMEZarrReader.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/activation.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/aggdesigner-algorithm.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/aircompressor.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/annotations.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/antlr.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/aopalliance.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/avatica-core.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/avatica-metrics.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/aws-java-sdk-core.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/aws-java-sdk-kms.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/aws-java-sdk-s3.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/base.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-all.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-anim.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-awt-util.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-bridge.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-codec.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-constants.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-css.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-dom.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-ext.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-extension.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-gui-util.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-gvt.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-i18n.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-parser.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-rasterizer-ext.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-rasterizer.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-script.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-slideshow.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-squiggle-ext.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-squiggle.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-svg-dom.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-svgbrowser.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-svggen.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-svgpp.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-svgrasterizer.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-swing.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-transcoder.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-ttf2svg.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-util.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/batik-xml.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/btm.jar
01:20:08 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/lib/client/bufr.jar
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01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/schema.sql
01:20:11 inflating: OMERO.server-5.6.3-531-d65edd4968-ice36/sql/psql/OMERO5.4__0/views.sql
01:20:11 + rm -f OMERO.server-5.6.3-531-d65edd4968-ice36.zip
01:20:11 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-531-d65edd4968-ice36 /home/omero/workspace/OMERO-server/OMERO.server
01:20:11 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:20:11 ++ deactivate nondestructive
01:20:11 ++ '[' -n '' ']'
01:20:11 ++ '[' -n '' ']'
01:20:11 ++ '[' -n /bin/bash -o -n '' ']'
01:20:11 ++ hash -r
01:20:11 ++ '[' -n '' ']'
01:20:11 ++ unset VIRTUAL_ENV
01:20:11 ++ '[' '!' nondestructive = nondestructive ']'
01:20:11 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:20:11 ++ export VIRTUAL_ENV
01:20:11 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:20:11 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:20:11 ++ export PATH
01:20:11 ++ '[' -n '' ']'
01:20:11 ++ '[' -z '' ']'
01:20:11 ++ _OLD_VIRTUAL_PS1=
01:20:11 ++ PS1='(.venv3) '
01:20:11 ++ export PS1
01:20:11 ++ '[' -n /bin/bash -o -n '' ']'
01:20:11 ++ hash -r
01:20:11 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:20:11 Collecting zeroc-ice==3.6.5
01:20:12 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:20:13 Installing collected packages: zeroc-ice
01:20:14 Successfully installed zeroc-ice-3.6.5
01:20:14 + pip install -U pip future
01:20:14 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:20:15 Collecting pip
01:20:15 Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
01:20:15 Collecting future
01:20:15 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:20:15 Installing collected packages: pip, future
01:20:15 Attempting uninstall: pip
01:20:15 Found existing installation: pip 21.2.3
01:20:15 Uninstalling pip-21.2.3:
01:20:15 Successfully uninstalled pip-21.2.3
01:20:17 Successfully installed future-1.0.0 pip-24.3.1
01:20:17 + pip install markdown
01:20:17 Collecting markdown
01:20:17 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:20:17 Collecting importlib-metadata>=4.4 (from markdown)
01:20:17 Using cached importlib_metadata-8.6.1-py3-none-any.whl.metadata (4.7 kB)
01:20:18 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:20:18 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
01:20:18 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:20:18 Using cached importlib_metadata-8.6.1-py3-none-any.whl (26 kB)
01:20:18 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
01:20:18 Installing collected packages: zipp, importlib-metadata, markdown
01:20:18 Successfully installed importlib-metadata-8.6.1 markdown-3.7 zipp-3.21.0
01:20:18 + pip install reportlab
01:20:19 Collecting reportlab
01:20:19 Using cached reportlab-4.2.5-py3-none-any.whl.metadata (1.5 kB)
01:20:19 Collecting pillow>=9.0.0 (from reportlab)
01:20:19 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:20:19 Collecting chardet (from reportlab)
01:20:19 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
01:20:19 Using cached reportlab-4.2.5-py3-none-any.whl (1.9 MB)
01:20:20 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:20:20 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
01:20:20 Installing collected packages: pillow, chardet, reportlab
01:20:21 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.2.5
01:20:21 + pip install omego
01:20:22 Collecting omego
01:20:22 Using cached omego-0.7.0-py3-none-any.whl
01:20:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
01:20:23 Collecting yaclifw>=0.1.1 (from omego)
01:20:23 Using cached yaclifw-0.2.0-py3-none-any.whl
01:20:23 Collecting six (from yaclifw>=0.1.1->omego)
01:20:23 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:20:23 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:20:23 Installing collected packages: six, yaclifw, omego
01:20:23 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0
01:20:23 + pip install tables
01:20:23 Collecting tables
01:20:23 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:20:24 Collecting numpy>=1.19.0 (from tables)
01:20:24 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:20:24 Collecting numexpr>=2.6.2 (from tables)
01:20:24 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
01:20:24 Collecting packaging (from tables)
01:20:24 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
01:20:24 Collecting py-cpuinfo (from tables)
01:20:25 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:20:25 Collecting blosc2>=2.3.0 (from tables)
01:20:25 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:20:25 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:20:25 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:20:25 Collecting msgpack (from blosc2>=2.3.0->tables)
01:20:25 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:20:25 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:20:26 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:20:26 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB)
01:20:26 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:20:26 Using cached packaging-24.2-py3-none-any.whl (65 kB)
01:20:26 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:20:26 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
01:20:26 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:20:26 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:20:30 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2
01:20:30 + pip install jinja2
01:20:30 Collecting jinja2
01:20:30 Using cached jinja2-3.1.5-py3-none-any.whl.metadata (2.6 kB)
01:20:30 Collecting MarkupSafe>=2.0 (from jinja2)
01:20:30 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:20:31 Using cached jinja2-3.1.5-py3-none-any.whl (134 kB)
01:20:31 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
01:20:31 Installing collected packages: MarkupSafe, jinja2
01:20:31 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.5
01:20:31 + pip install omero-py
01:20:31 Collecting omero-py
01:20:31 Using cached omero_py-5.19.6-py3-none-any.whl.metadata (6.4 kB)
01:20:31 Collecting urllib3<2 (from omero-py)
01:20:31 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:20:32 Collecting appdirs (from omero-py)
01:20:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:20:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:20:32 Collecting numpy<2 (from omero-py)
01:20:32 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:20:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.1.0)
01:20:32 Collecting PyYAML (from omero-py)
01:20:32 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:20:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:20:32 Collecting requests (from omero-py)
01:20:32 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:20:32 Collecting portalocker (from omero-py)
01:20:32 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
01:20:32 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:20:33 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
01:20:33 Collecting idna<4,>=2.5 (from requests->omero-py)
01:20:33 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:20:33 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:20:33 Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB)
01:20:33 Using cached omero_py-5.19.6-py3-none-any.whl (2.8 MB)
01:20:33 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:20:33 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:20:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:20:33 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:20:33 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:20:34 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:20:34 Using cached certifi-2024.12.14-py3-none-any.whl (164 kB)
01:20:34 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB)
01:20:34 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:20:35 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
01:20:35 Attempting uninstall: numpy
01:20:35 Found existing installation: numpy 2.0.2
01:20:35 Uninstalling numpy-2.0.2:
01:20:35 Successfully uninstalled numpy-2.0.2
01:20:39 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.12.14 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.6 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20
01:20:39 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:20:40 Collecting omero-metadata
01:20:40 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-6yop0kn1/omero-metadata_a1ae4b2615b9494fa0dfe011640e2794
01:20:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-6yop0kn1/omero-metadata_a1ae4b2615b9494fa0dfe011640e2794
01:20:42 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit ccf38d518f3c28c3b4831ed8aad8819c5378fb85
01:20:42 Installing build dependencies: started
01:20:44 Installing build dependencies: finished with status 'done'
01:20:44 Getting requirements to build wheel: started
01:20:45 Getting requirements to build wheel: finished with status 'done'
01:20:45 Preparing metadata (pyproject.toml): started
01:20:45 Preparing metadata (pyproject.toml): finished with status 'done'
01:20:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.6)
01:20:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
01:20:45 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.5)
01:20:45 Collecting pandas (from omero-metadata)
01:20:45 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
01:20:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
01:20:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:20:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:20:45 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
01:20:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
01:20:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:20:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
01:20:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
01:20:45 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2)
01:20:45 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:20:45 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:20:45 Collecting pytz>=2020.1 (from pandas->omero-metadata)
01:20:45 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:20:45 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
01:20:45 Using cached tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB)
01:20:45 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
01:20:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
01:20:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
01:20:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.12.14)
01:20:46 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
01:20:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:20:46 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:20:46 Using cached tzdata-2025.1-py2.py3-none-any.whl (346 kB)
01:20:46 Building wheels for collected packages: omero-metadata
01:20:46 Building wheel for omero-metadata (pyproject.toml): started
01:20:47 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:20:47 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39249 sha256=c2d8eb8160e682b258da985ebcaaa9761ec90a0f646149b140c1ec8153235ec7
01:20:47 Stored in directory: /tmp/pip-ephem-wheel-cache-iph0glz2/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
01:20:47 Successfully built omero-metadata
01:20:47 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:20:52 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2025.1
01:20:52 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:20:52 Collecting omero-cli-render
01:20:52 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-gm7re9x7/omero-cli-render_d79e86f2633a411182dc3ff709f354c8
01:20:52 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-gm7re9x7/omero-cli-render_d79e86f2633a411182dc3ff709f354c8
01:20:53 Running command git checkout -b merge_ci --track origin/merge_ci
01:20:54 Switched to a new branch 'merge_ci'
01:20:54 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:20:54 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 3cea4743e3a082d4aa7a7d7df9804bcc18296550
01:20:54 Installing build dependencies: started
01:20:55 Installing build dependencies: finished with status 'done'
01:20:55 Getting requirements to build wheel: started
01:20:55 Getting requirements to build wheel: finished with status 'done'
01:20:55 Preparing metadata (pyproject.toml): started
01:20:56 Preparing metadata (pyproject.toml): finished with status 'done'
01:20:56 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
01:20:56 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.6)
01:20:56 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
01:20:56 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:20:56 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:20:56 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
01:20:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
01:20:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:20:56 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
01:20:56 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
01:20:56 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
01:20:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
01:20:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.12.14)
01:20:56 Building wheels for collected packages: omero-cli-render
01:20:56 Building wheel for omero-cli-render (pyproject.toml): started
01:20:56 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:20:56 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19580 sha256=157737ae3bd2124e9f196fe12e6c58f9072e259fb33dee8aac9fbf43c1a6d6f0
01:20:56 Stored in directory: /tmp/pip-ephem-wheel-cache-sq9s5eti/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
01:20:56 Successfully built omero-cli-render
01:20:56 Installing collected packages: omero-cli-render
01:20:56 Successfully installed omero-cli-render-0.8.2.dev0
01:20:56 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:20:57 Collecting omero-cli-duplicate
01:20:57 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-5fboj53s/omero-cli-duplicate_73b7f45e240e4dfbabe6e5379b3e6283
01:20:57 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-5fboj53s/omero-cli-duplicate_73b7f45e240e4dfbabe6e5379b3e6283
01:20:57 Running command git checkout -b merge_ci --track origin/merge_ci
01:20:58 Switched to a new branch 'merge_ci'
01:20:58 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:20:58 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit d136269c9e01ad9ced7736c9b8d55f3a1475ddea
01:20:58 Installing build dependencies: started
01:20:59 Installing build dependencies: finished with status 'done'
01:20:59 Getting requirements to build wheel: started
01:21:00 Getting requirements to build wheel: finished with status 'done'
01:21:00 Preparing metadata (pyproject.toml): started
01:21:00 Preparing metadata (pyproject.toml): finished with status 'done'
01:21:00 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6)
01:21:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:21:00 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:21:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:21:00 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:21:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
01:21:00 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:21:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:21:00 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:21:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
01:21:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
01:21:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:21:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.12.14)
01:21:00 Building wheels for collected packages: omero-cli-duplicate
01:21:00 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:21:00 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:21:00 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11507 sha256=44547de49eb73be4b4ed90de16bffe10a7ddfc4be9da789c6fd23c9bccd66a4d
01:21:00 Stored in directory: /tmp/pip-ephem-wheel-cache-a7c0fqde/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:21:00 Successfully built omero-cli-duplicate
01:21:00 Installing collected packages: omero-cli-duplicate
01:21:00 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:21:00 + pip install omero-certificates
01:21:01 Collecting omero-certificates
01:21:01 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:21:01 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6)
01:21:01 Collecting distro==1.8.0 (from omero-certificates)
01:21:01 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:21:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:21:01 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:21:01 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:21:01 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:21:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
01:21:01 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:21:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:21:01 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:21:01 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
01:21:01 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
01:21:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:21:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.12.14)
01:21:01 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:21:01 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:21:01 Installing collected packages: distro, omero-certificates
01:21:01 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:21:01 + for x in *.tar.gz
01:21:01 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:21:02 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:21:02 Installing build dependencies: started
01:21:03 Installing build dependencies: finished with status 'done'
01:21:03 Getting requirements to build wheel: started
01:21:04 Getting requirements to build wheel: finished with status 'done'
01:21:04 Preparing metadata (pyproject.toml): started
01:21:04 Preparing metadata (pyproject.toml): finished with status 'done'
01:21:04 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.6)
01:21:04 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:21:04 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:21:04 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:21:04 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:21:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
01:21:04 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:21:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:21:04 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:21:04 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
01:21:04 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
01:21:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:21:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.12.14)
01:21:04 Building wheels for collected packages: omero-dropbox
01:21:04 Building wheel for omero-dropbox (pyproject.toml): started
01:21:04 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:21:04 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49107 sha256=964208a05d7c940b50dddc34709ad3824bffc88d27405b53ee853a44659e982f
01:21:04 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
01:21:04 Successfully built omero-dropbox
01:21:04 Installing collected packages: omero-dropbox
01:21:04 Successfully installed omero-dropbox-5.7.1.dev0
01:21:04 + for x in *.tar.gz
01:21:04 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:21:05 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:21:05 Installing build dependencies: started
01:21:07 Installing build dependencies: finished with status 'done'
01:21:07 Getting requirements to build wheel: started
01:21:08 Getting requirements to build wheel: finished with status 'done'
01:21:08 Preparing metadata (pyproject.toml): started
01:21:08 Preparing metadata (pyproject.toml): finished with status 'done'
01:21:08 Building wheels for collected packages: omero_marshal
01:21:08 Building wheel for omero_marshal (pyproject.toml): started
01:21:08 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:21:08 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88094 sha256=e7037772c7e04031e70cedf882e68bbf3318d979a8c632c391e33e4e642444ac
01:21:08 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
01:21:08 Successfully built omero_marshal
01:21:09 Installing collected packages: omero_marshal
01:21:09 Successfully installed omero_marshal-0.9.1.dev0
01:21:09 + for x in *.tar.gz
01:21:09 + pip install -U omero_py-5.19.7.dev0.tar.gz
01:21:09 Processing ./omero_py-5.19.7.dev0.tar.gz
01:21:10 Installing build dependencies: started
01:21:14 Installing build dependencies: finished with status 'done'
01:21:14 Getting requirements to build wheel: started
01:21:15 Getting requirements to build wheel: finished with status 'done'
01:21:15 Preparing metadata (pyproject.toml): started
01:21:15 Preparing metadata (pyproject.toml): finished with status 'done'
01:21:15 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.20)
01:21:15 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.4.4)
01:21:15 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.0.0)
01:21:15 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.4)
01:21:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (11.1.0)
01:21:15 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (6.0.2)
01:21:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.6.5)
01:21:15 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (2.32.3)
01:21:15 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.1.1)
01:21:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1)
01:21:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.10)
01:21:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (2024.12.14)
01:21:15 Building wheels for collected packages: omero-py
01:21:15 Building wheel for omero-py (pyproject.toml): started
01:21:16 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:21:16 Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=2783322 sha256=548559754347ce2bf8acfb6e76aa1b3024f58e9deeed3633ff9764e1efea8a16
01:21:16 Stored in directory: /home/omero/.cache/pip/wheels/f7/4b/64/80f70975ab0fd7430ae6a8e09a093688abe603abcb5090fc1b
01:21:16 Successfully built omero-py
01:21:16 Installing collected packages: omero-py
01:21:16 Attempting uninstall: omero-py
01:21:16 Found existing installation: omero-py 5.19.6
01:21:16 Uninstalling omero-py-5.19.6:
01:21:17 Successfully uninstalled omero-py-5.19.6
01:21:19 Successfully installed omero-py-5.19.7.dev0
01:21:19 + for x in *.tar.gz
01:21:19 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
01:21:19 Processing ./omero_scripts-5.9.1.dev0.tar.gz
01:21:19 Installing build dependencies: started
01:21:21 Installing build dependencies: finished with status 'done'
01:21:21 Getting requirements to build wheel: started
01:21:21 Getting requirements to build wheel: finished with status 'done'
01:21:21 Preparing metadata (pyproject.toml): started
01:21:22 Preparing metadata (pyproject.toml): finished with status 'done'
01:21:22 Building wheels for collected packages: omero-scripts
01:21:22 Building wheel for omero-scripts (pyproject.toml): started
01:21:22 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:21:22 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136850 sha256=1534b7fafabea4360a38747f74aafb2c1f6eba58d52bfce6f0c64556707dc7ed
01:21:22 Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c
01:21:22 Successfully built omero-scripts
01:21:22 Installing collected packages: omero-scripts
01:21:22 Successfully installed omero-scripts-5.9.1.dev0
01:21:22 + for x in *.tar.gz
01:21:22 + pip install -U omero_web-5.28.1.dev0.tar.gz
01:21:23 Processing ./omero_web-5.28.1.dev0.tar.gz
01:21:23 Installing build dependencies: started
01:21:25 Installing build dependencies: finished with status 'done'
01:21:25 Getting requirements to build wheel: started
01:21:25 Getting requirements to build wheel: finished with status 'done'
01:21:25 Preparing metadata (pyproject.toml): started
01:21:26 Preparing metadata (pyproject.toml): finished with status 'done'
01:21:26 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (5.19.7.dev0)
01:21:26 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.28.1.dev0)
01:21:26 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:21:26 Collecting Django<4.3,>=4.2.3 (from omero-web==5.28.1.dev0)
01:21:26 Using cached Django-4.2.18-py3-none-any.whl.metadata (4.1 kB)
01:21:26 Collecting django-pipeline (from omero-web==5.28.1.dev0)
01:21:26 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
01:21:26 Collecting django-cors-headers==3.7.0 (from omero-web==5.28.1.dev0)
01:21:26 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:21:27 Collecting django-csp (from omero-web==5.28.1.dev0)
01:21:27 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:21:27 Collecting whitenoise>=5.3.0 (from omero-web==5.28.1.dev0)
01:21:27 Using cached whitenoise-6.8.2-py3-none-any.whl.metadata (3.6 kB)
01:21:27 Collecting gunicorn>=19.3 (from omero-web==5.28.1.dev0)
01:21:27 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:21:27 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (0.9.1.dev0)
01:21:27 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (11.1.0)
01:21:27 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (2024.2)
01:21:27 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (3.1.1)
01:21:27 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (24.2)
01:21:27 Collecting importlib-resources (from omero-web==5.28.1.dev0)
01:21:27 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
01:21:27 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:21:27 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:21:28 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:21:28 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
01:21:28 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.20)
01:21:28 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.4.4)
01:21:28 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.0.0)
01:21:28 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.4)
01:21:28 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (6.0.2)
01:21:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.6.5)
01:21:28 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (2.32.3)
01:21:28 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.28.1.dev0) (53.0.0)
01:21:28 Collecting wheel (from django-pipeline->omero-web==5.28.1.dev0)
01:21:28 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
01:21:28 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.28.1.dev0) (3.21.0)
01:21:28 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:21:28 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:21:28 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.4.1)
01:21:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.10)
01:21:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (2024.12.14)
01:21:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:21:28 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:21:28 Using cached Django-4.2.18-py3-none-any.whl (8.0 MB)
01:21:29 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:21:29 Using cached whitenoise-6.8.2-py3-none-any.whl (20 kB)
01:21:29 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:21:29 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
01:21:29 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
01:21:29 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:21:29 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
01:21:29 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
01:21:29 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:21:29 Building wheels for collected packages: omero-web
01:21:29 Building wheel for omero-web (pyproject.toml): started
01:21:31 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:21:31 Created wheel for omero-web: filename=omero_web-5.28.1.dev0-py3-none-any.whl size=2770880 sha256=65fa0e5b8cd30542978462ed66a4f4a8b33ee7eb2655b6cd03061b1df3b437cf
01:21:31 Stored in directory: /home/omero/.cache/pip/wheels/97/1e/88/508867809512b265cdeb53be905e01f64ea0b8d6c0b64f8ebd
01:21:31 Successfully built omero-web
01:21:31 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web
01:21:35 Successfully installed Django-4.2.18 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.28.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.8.2
01:21:35 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:21:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:21:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:21:36 --2025-01-26 01:21:36-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:21:37 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.109.133, ...
01:21:37 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
01:21:37 HTTP request sent, awaiting response... 200 OK
01:21:37 Length: 111766 (109K) [text/plain]
01:21:37 Saving to: ‘Figure_To_Pdf.py’
01:21:37
01:21:37 0K .......... .......... .......... .......... .......... 45% 3.29M 0s
01:21:37 50K .......... .......... .......... .......... .......... 91% 4.85M 0s
01:21:37 100K ......... 100% 323M=0.02s
01:21:37
01:21:37 2025-01-26 01:21:37 (4.27 MB/s) - ‘Figure_To_Pdf.py’ saved [111766/111766]
01:21:37
01:21:37 + chmod 755 Figure_To_Pdf.py
01:21:37 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:21:37 + omero config set omero.db.name OMERO-server
01:21:39 + omero config set omero.db.host pg
01:21:40 + omero config set omero.db.user postgres
01:21:42 + omero config set omero.data.dir /home/omero/omero-server-data
01:21:43 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:21:45 + omero config set omero.db.poolsize 25
01:21:46 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:21:48 + omero config set omero.security.trustStorePassword changeit
01:21:49 + omero config set omero.mail.config true
01:21:51 + omero config set omero.mail.from qa@openmicroscopy.org.uk
01:21:52 + omero config set omero.mail.host smtp.dundee.ac.uk
01:21:53 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:21:55 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:21:56 + omero certificates
01:21:58 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:21:58 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:21:58 + '[' false = true ']'
01:21:58 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:21:58 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:21:58 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:21:58 2025-01-26 01:21:58,882 [ omego.db] DEBUG dbcommand => upgrade
01:21:58 2025-01-26 01:21:58,882 [ omego.db] DEBUG dbhost => localhost
01:21:58 2025-01-26 01:21:58,882 [ omego.db] DEBUG dbname => OMERO-server
01:21:58 2025-01-26 01:21:58,882 [ omego.db] DEBUG dbpass => omero
01:21:58 2025-01-26 01:21:58,882 [ omego.db] DEBUG dbuser => omero
01:21:58 2025-01-26 01:21:58,882 [ omego.db] DEBUG rootpass => omero
01:21:58 2025-01-26 01:21:58,882 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:21:58 2025-01-26 01:21:58,882 [omego.extern] INFO Executing : omero version
01:22:00 OMERO.py version:
01:22:00 OMERO.server version:
01:22:00 5.6.3-531-d65edd4968-ice36
01:22:00 5.19.7.dev0
01:22:00 2025-01-26 01:22:00,493 [omego.extern] INFO Completed [1.610 s]
01:22:00 2025-01-26 01:22:00,493 [omego.extern] DEBUG Using omero CLI from omero
01:22:00 2025-01-26 01:22:00,493 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:22:00 2025-01-26 01:22:00,493 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:22:00 2025-01-26 01:22:00,493 [omego.extern] INFO Executing : omero config get --show-password
01:22:01 2025-01-26 01:22:01,914 [omego.extern] INFO Completed [1.420 s]
01:22:01 2025-01-26 01:22:01,914 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:22:01 2025-01-26 01:22:01,914 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:22:02 2025-01-26 01:22:02,528 [omego.extern] INFO Completed [0.613 s]
01:22:02 2025-01-26 01:22:02,528 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
01:22:02 2025-01-26 01:22:02,528 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4
01:22:02
01:22:02 2025-01-26 01:22:02,528 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:22:02 2025-01-26 01:22:02,528 [omego.extern] INFO Executing : omero config get --show-password
01:22:03 2025-01-26 01:22:03,978 [omego.extern] INFO Completed [1.450 s]
01:22:03 2025-01-26 01:22:03,978 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:22:03 2025-01-26 01:22:03,979 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:22:04 2025-01-26 01:22:04,132 [omego.extern] INFO Completed [0.153 s]
01:22:04 2025-01-26 01:22:04,132 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
01:22:04 2025-01-26 01:22:04,132 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:22:04 2025-01-26 01:22:04,132 [omego.extern] INFO Running [current environment]: omero config get --show-password
01:22:04 2025-01-26 01:22:04,132 [omego.extern] INFO Executing : omero config get --show-password
01:22:05 2025-01-26 01:22:05,683 [omego.extern] INFO Completed [1.550 s]
01:22:05 2025-01-26 01:22:05,683 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
01:22:05 2025-01-26 01:22:05,683 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:22:06 2025-01-26 01:22:06,107 [omego.extern] INFO Completed [0.424 s]
01:22:06 2025-01-26 01:22:06,107 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:22:06 2025-01-26 01:22:06,107 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
01:22:06 2025-01-26 01:22:06,110 [ omego.db] INFO Database is already at OMERO5.4__0
01:22:06 + export LANG=en_US.UTF-8
01:22:06 + LANG=en_US.UTF-8
01:22:06 + export LANGUAGE=en_US:en
01:22:06 + LANGUAGE=en_US:en
01:22:06 + export LC_ALL=en_US.UTF-8
01:22:06 + LC_ALL=en_US.UTF-8
01:22:06 + BUILD_ID=DONT_KILL_ME
01:22:06 + omero admin start
01:22:17 No descriptor given. Using etc/grid/default.xml
01:22:29 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:22:29 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:22:29 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:22:29 Waiting on startup. Use CTRL-C to exit
01:22:30 + omero admin waitup
01:22:31 Waiting on startup. Use CTRL-C to exit
01:22:31 + omero admin diagnostics
01:22:33
01:22:33 ================================================================================
01:22:33 OMERO Diagnostics (admin)
01:22:33 ================================================================================
01:22:33
01:22:33 Commands: java -version 11.0.24 (/usr/bin/java)
01:22:33 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:22:33 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
01:22:33 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
01:22:33 Commands: psql --version 16.4 (/usr/bin/psql)
01:22:33 Commands: openssl version 3.0.71 (/usr/bin/openssl)
01:22:33
01:22:33 Component: OMERO.py 5.19.7.dev0
01:22:33 Component: OMERO.server 5.6.3-531-d65edd4968-ice36
01:22:33
01:22:33 Server: icegridnode running
01:22:33 Server: Blitz-0 active (pid = 23559, enabled)
01:22:33 Server: Indexer-0 activating (enabled)
01:22:33 Server: OMERO.Glacier2 active (pid = 23586, enabled)
01:22:33 Server: OMERO.IceStorm active (pid = 23613, enabled)
01:22:33 Server: Processor-0 activating (enabled)
01:22:33 Server: Tables-0 activating (enabled)
01:22:33
01:22:33 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:22:33 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
01:22:33 Log files: DropBox.log n/a
01:22:33 Log files: FileServer.log n/a
01:22:33 Log files: Indexer-0.log 598 B
01:22:33 Log files: MonitorServer.log n/a
01:22:33 Log files: Processor-0.log 592 B
01:22:33 Log files: Tables-0.log 841 B
01:22:33 Log files: TestDropBox.log n/a
01:22:33 Log files: master.err 180 B
01:22:33 Log files: master.out 30.1 KB
01:22:33 Log files: Total size 0.05 MB
01:22:33
01:22:33
01:22:33 Environment:OMERO_HOME=(unset)
01:22:33 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:22:33 Environment:OMERO_NODE=(unset)
01:22:33 Environment:OMERO_MASTER=(unset)
01:22:33 Environment:OMERO_USERDIR=(unset)
01:22:33 Environment:OMERO_TMPDIR=(unset)
01:22:33 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:22:33 Environment:PYTHONPATH=(unset)
01:22:33 Environment:ICE_HOME=/opt/ice-3.6.5
01:22:33 Environment:LD_LIBRARY_PATH=(unset)
01:22:33 Environment:DYLD_LIBRARY_PATH=(unset)
01:22:33
01:22:33 OMERO SSL port:4064
01:22:33 OMERO TCP port:4063
01:22:33 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
01:22:33 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
01:22:33
01:22:33 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:33 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:33 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:33 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:33
01:22:33 Jar: lib/server/formats-api.jar Bio-Formats API 8.1.0-SNAPSHOT 26 January 2025 058bc89e472710748f936a204a91bc125fe5d3ad
01:22:33 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.1.0-SNAPSHOT 26 January 2025 058bc89e472710748f936a204a91bc125fe5d3ad
01:22:33 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.1.0-SNAPSHOT 26 January 2025 058bc89e472710748f936a204a91bc125fe5d3ad
01:22:33 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 26 January 2025 8c27d3c28340ed77438d3d0120c52d546376dacf
01:22:33 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 26 January 2025 8c27d3c28340ed77438d3d0120c52d546376dacf
01:22:33 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 26 January 2025 8c27d3c28340ed77438d3d0120c52d546376dacf
01:22:33 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 26 January 2025 8c27d3c28340ed77438d3d0120c52d546376dacf
01:22:33 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 26 January 2025 8c27d3c28340ed77438d3d0120c52d546376dacf
01:22:33 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 26 January 2025 8c27d3c28340ed77438d3d0120c52d546376dacf
01:22:33 Jar: lib/server/omero-blitz.jar jar 5.8.1-SNAPSHOT
01:22:33 Jar: lib/server/omero-common.jar jar 5.7.1-SNAPSHOT
01:22:33 Jar: lib/server/omero-gateway.jar jar 5.10.1-SNAPSHOT
01:22:33 Jar: lib/server/omero-model.jar jar 5.7.1-SNAPSHOT
01:22:33 Jar: lib/server/omero-renderer.jar jar 5.6.1-SNAPSHOT
01:22:33 Jar: lib/server/omero-romio.jar jar 5.8.1-SNAPSHOT
01:22:33 Jar: lib/server/omero-server.jar jar 5.7.1-SNAPSHOT
01:22:34 + deactivate
01:22:34 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:22:34 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:22:34 + export PATH
01:22:34 + unset _OLD_VIRTUAL_PATH
01:22:34 + '[' -n '' ']'
01:22:34 + '[' -n /bin/bash -o -n '' ']'
01:22:34 + hash -r
01:22:34 + '[' -n '' ']'
01:22:34 + unset VIRTUAL_ENV
01:22:34 + '[' '!' '' = nondestructive ']'
01:22:34 + unset -f deactivate
01:22:34 Finished: SUCCESS
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