Console Output

01:19:00 Started by upstream project "Trigger" build number 353
01:19:00 originally caused by:
01:19:00  Started by timer
01:19:00 Running as SYSTEM
01:19:01 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:19:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2322704938207118225.sh
01:19:01 + source /home/settings.env
01:19:01 ++ OMERO_DB_HOST=pg
01:19:01 ++ OMERO_DB_USER=postgres
01:19:01 ++ OMERO_DB_PASS=
01:19:01 ++ OMERO_ROOT_PASS=omero
01:19:01 ++ OMERO_DATA_DIR=/OMERO
01:19:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:19:01 + OMERO_DB_NAME=OMERO-server
01:19:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:19:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:19:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:19:01 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:19:01 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:19:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:19:01 ++ deactivate nondestructive
01:19:01 ++ '[' -n '' ']'
01:19:01 ++ '[' -n '' ']'
01:19:01 ++ '[' -n /bin/bash -o -n '' ']'
01:19:01 ++ hash -r
01:19:01 ++ '[' -n '' ']'
01:19:01 ++ unset VIRTUAL_ENV
01:19:01 ++ '[' '!' nondestructive = nondestructive ']'
01:19:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:19:01 ++ export VIRTUAL_ENV
01:19:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:01 ++ export PATH
01:19:01 ++ '[' -n '' ']'
01:19:01 ++ '[' -z '' ']'
01:19:01 ++ _OLD_VIRTUAL_PS1=
01:19:01 ++ PS1='(.venv3) '
01:19:01 ++ export PS1
01:19:01 ++ '[' -n /bin/bash -o -n '' ']'
01:19:01 ++ hash -r
01:19:01 + omero admin stop
01:19:19 Waiting on shutdown. Use CTRL-C to exit
01:19:19 .+ sleep 5
01:19:35 + deactivate
01:19:35 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:19:35 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:35 + export PATH
01:19:35 + unset _OLD_VIRTUAL_PATH
01:19:35 + '[' -n '' ']'
01:19:35 + '[' -n /bin/bash -o -n '' ']'
01:19:35 + hash -r
01:19:35 + '[' -n '' ']'
01:19:35 + unset VIRTUAL_ENV
01:19:35 + '[' '!' '' = nondestructive ']'
01:19:35 + unset -f deactivate
01:19:35 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:19:38 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
01:19:44 + '[' false = true ']'
01:19:44 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:19:44 Skipping PURGE_DATA:CleanDbAndRepo
01:19:44 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.1-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.7.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.28.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:19:50 Copied 1 artifact from "OMERO-build" build number 302
01:19:54 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 298
01:19:55 Copied 2 artifacts from "OMERO-build-build" build number 311
01:19:56 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13125550106747303457.sh
01:19:56 + source /home/settings.env
01:19:56 ++ OMERO_DB_HOST=pg
01:19:56 ++ OMERO_DB_USER=postgres
01:19:56 ++ OMERO_DB_PASS=
01:19:56 ++ OMERO_ROOT_PASS=omero
01:19:56 ++ OMERO_DATA_DIR=/OMERO
01:19:56 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:19:56 + OMERO_DB_NAME=OMERO-server
01:19:56 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:19:56 + mkdir -p /home/omero/omero-server-data
01:19:56 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:19:56 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:19:56 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:19:56 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:19:56 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:19:56 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:19:56 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:19:56 ++ ls OMERO.server-5.6.3-531-bbc148294a-ice36.zip
01:19:56 + ZIP=OMERO.server-5.6.3-531-bbc148294a-ice36.zip
01:19:56 + '[' '!' -z '' ']'
01:19:56 + DIST=OMERO.server-5.6.3-531-bbc148294a-ice36
01:19:56 + unzip OMERO.server-5.6.3-531-bbc148294a-ice36.zip
01:19:56 Archive:  OMERO.server-5.6.3-531-bbc148294a-ice36.zip
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/blitz/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/grid/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/profiles/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/error/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/grid/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/luts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/luts/janelia/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/luts/matplotlib/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/luts/ncsa_paledit/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/luts/seaborn/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/luts/wcif/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/omero/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/omero/analysis_scripts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/omero/annotation_scripts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/omero/export_scripts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/omero/figure_scripts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/omero/import_scripts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/scripts/omero/util_scripts/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/server/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/share/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/share/licenses/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/misc/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__1/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__10/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__11/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__2/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__3/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__4/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__5/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__6/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__7/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__8/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3A__9/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3__4/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3__5/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3__6/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO3__7/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO4.1__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO4.2__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO4.2__0/t/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO4.3__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO4.4__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO4__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.0__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.1__1/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.2__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.3__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4DEV__1/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4DEV__2/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4DEV__3/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/
01:19:56    creating: OMERO.server-5.6.3-531-bbc148294a-ice36/var/
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/LICENSE.txt  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/backup.cfg  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/blitz/mail-senders.example  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/blitz/mail-server.example  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/build.properties  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/env.bat  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/env.sh  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/hibernate.properties  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/ice.config  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/logback-cli.xml  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/logback-indexing-cli.xml  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/logback-indexing.xml  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/logback.xml  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/mime.types  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/node1.cfg  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/node2.cfg  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/omero.properties  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/profiles/psql  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/rollover.cfg  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/Windows.cfg  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/error/maintainance.html  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/grid/README  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/grid/default.xml  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/grid/templates.xml  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/grid/windefault.xml  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/ice.config  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/internal.cfg  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/master.cfg  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/templates/robot.template  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/etc/testdropbox.config  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/history.rst  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/OMEZarrReader.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/activation.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/aggdesigner-algorithm.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/aircompressor.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/annotations.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/antlr.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/aopalliance.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/avatica-core.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/avatica-metrics.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/aws-java-sdk-core.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/aws-java-sdk-kms.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/aws-java-sdk-s3.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/base.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-all.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-anim.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-awt-util.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-bridge.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-codec.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-constants.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-css.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-dom.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-ext.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-extension.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-gui-util.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-gvt.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-i18n.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-parser.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-rasterizer-ext.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-rasterizer.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-script.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-slideshow.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-squiggle-ext.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-squiggle.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-svg-dom.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-svgbrowser.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-svggen.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-svgpp.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-svgrasterizer.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-swing.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-transcoder.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-ttf2svg.jar  
01:19:56   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/lib/client/batik-util.jar  
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01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/psql-footer.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/psql-header.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/schema.sql  
01:19:59   inflating: OMERO.server-5.6.3-531-bbc148294a-ice36/sql/psql/OMERO5.4__0/views.sql  
01:19:59 + rm -f OMERO.server-5.6.3-531-bbc148294a-ice36.zip
01:19:59 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-531-bbc148294a-ice36 /home/omero/workspace/OMERO-server/OMERO.server
01:19:59 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:19:59 ++ deactivate nondestructive
01:19:59 ++ '[' -n '' ']'
01:19:59 ++ '[' -n '' ']'
01:19:59 ++ '[' -n /bin/bash -o -n '' ']'
01:19:59 ++ hash -r
01:19:59 ++ '[' -n '' ']'
01:19:59 ++ unset VIRTUAL_ENV
01:19:59 ++ '[' '!' nondestructive = nondestructive ']'
01:19:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:19:59 ++ export VIRTUAL_ENV
01:19:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:59 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:19:59 ++ export PATH
01:19:59 ++ '[' -n '' ']'
01:19:59 ++ '[' -z '' ']'
01:19:59 ++ _OLD_VIRTUAL_PS1=
01:19:59 ++ PS1='(.venv3) '
01:19:59 ++ export PS1
01:19:59 ++ '[' -n /bin/bash -o -n '' ']'
01:19:59 ++ hash -r
01:19:59 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:19:59 Collecting zeroc-ice==3.6.5
01:20:00   Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:20:02 Installing collected packages: zeroc-ice
01:20:02 Successfully installed zeroc-ice-3.6.5
01:20:02 + pip install -U pip future
01:20:03 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:20:03 Collecting pip
01:20:03   Downloading pip-25.0-py3-none-any.whl (1.8 MB)
01:20:03 Collecting future
01:20:03   Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:20:04 Installing collected packages: pip, future
01:20:04   Attempting uninstall: pip
01:20:04     Found existing installation: pip 21.2.3
01:20:04     Uninstalling pip-21.2.3:
01:20:04       Successfully uninstalled pip-21.2.3
01:20:05 Successfully installed future-1.0.0 pip-25.0
01:20:05 + pip install markdown
01:20:06 Collecting markdown
01:20:06   Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
01:20:06 Collecting importlib-metadata>=4.4 (from markdown)
01:20:06   Using cached importlib_metadata-8.6.1-py3-none-any.whl.metadata (4.7 kB)
01:20:06 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
01:20:06   Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
01:20:06 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
01:20:06 Using cached importlib_metadata-8.6.1-py3-none-any.whl (26 kB)
01:20:06 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
01:20:06 Installing collected packages: zipp, importlib-metadata, markdown
01:20:06 Successfully installed importlib-metadata-8.6.1 markdown-3.7 zipp-3.21.0
01:20:07 + pip install reportlab
01:20:07 Collecting reportlab
01:20:07   Using cached reportlab-4.2.5-py3-none-any.whl.metadata (1.5 kB)
01:20:08 Collecting pillow>=9.0.0 (from reportlab)
01:20:08   Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:20:08 Collecting chardet (from reportlab)
01:20:08   Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
01:20:08 Using cached reportlab-4.2.5-py3-none-any.whl (1.9 MB)
01:20:08 Using cached pillow-11.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:20:08 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
01:20:08 Installing collected packages: pillow, chardet, reportlab
01:20:09 Successfully installed chardet-5.2.0 pillow-11.1.0 reportlab-4.2.5
01:20:10 + pip install omego
01:20:10 Collecting omego
01:20:10   Using cached omego-0.7.0-py3-none-any.whl
01:20:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
01:20:10 Collecting yaclifw>=0.1.1 (from omego)
01:20:10   Using cached yaclifw-0.2.0-py3-none-any.whl
01:20:11 Collecting six (from yaclifw>=0.1.1->omego)
01:20:11   Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:20:11 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:20:11 Installing collected packages: six, yaclifw, omego
01:20:11 Successfully installed omego-0.7.0 six-1.17.0 yaclifw-0.2.0
01:20:11 + pip install tables
01:20:11 Collecting tables
01:20:11   Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
01:20:12 Collecting numpy>=1.19.0 (from tables)
01:20:12   Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
01:20:12 Collecting numexpr>=2.6.2 (from tables)
01:20:12   Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
01:20:12 Collecting packaging (from tables)
01:20:12   Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
01:20:13 Collecting py-cpuinfo (from tables)
01:20:13   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:20:13 Collecting blosc2>=2.3.0 (from tables)
01:20:13   Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
01:20:13 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
01:20:13   Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
01:20:13 Collecting msgpack (from blosc2>=2.3.0->tables)
01:20:13   Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:20:13 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:20:13 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:20:13 Using cached numexpr-2.10.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (396 kB)
01:20:13 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
01:20:14 Using cached packaging-24.2-py3-none-any.whl (65 kB)
01:20:14 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:20:14 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
01:20:14 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
01:20:14 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
01:20:18 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.2 numpy-2.0.2 packaging-24.2 py-cpuinfo-9.0.0 tables-3.9.2
01:20:18 + pip install jinja2
01:20:18 Collecting jinja2
01:20:18   Using cached jinja2-3.1.5-py3-none-any.whl.metadata (2.6 kB)
01:20:18 Collecting MarkupSafe>=2.0 (from jinja2)
01:20:18   Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:20:18 Using cached jinja2-3.1.5-py3-none-any.whl (134 kB)
01:20:18 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
01:20:18 Installing collected packages: MarkupSafe, jinja2
01:20:19 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.5
01:20:19 + pip install omero-py
01:20:19 Collecting omero-py
01:20:19   Using cached omero_py-5.19.6-py3-none-any.whl.metadata (6.4 kB)
01:20:19 Collecting urllib3<2 (from omero-py)
01:20:19   Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:20:20 Collecting appdirs (from omero-py)
01:20:20   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:20:20 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:20:20 Collecting numpy<2 (from omero-py)
01:20:20   Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
01:20:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (11.1.0)
01:20:20 Collecting PyYAML (from omero-py)
01:20:20   Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:20:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:20:21 Collecting requests (from omero-py)
01:20:21   Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:20:21 Collecting portalocker (from omero-py)
01:20:21   Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
01:20:21 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
01:20:21   Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
01:20:21 Collecting idna<4,>=2.5 (from requests->omero-py)
01:20:21   Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:20:21 Collecting certifi>=2017.4.17 (from requests->omero-py)
01:20:21   Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB)
01:20:21 Using cached omero_py-5.19.6-py3-none-any.whl (2.8 MB)
01:20:21 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
01:20:21 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:20:21 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:20:21 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:20:21 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
01:20:21 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:20:21 Using cached certifi-2024.12.14-py3-none-any.whl (164 kB)
01:20:21 Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB)
01:20:22 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:20:22 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
01:20:22   Attempting uninstall: numpy
01:20:22     Found existing installation: numpy 2.0.2
01:20:22     Uninstalling numpy-2.0.2:
01:20:22       Successfully uninstalled numpy-2.0.2
01:20:26 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.12.14 charset-normalizer-3.4.1 idna-3.10 numpy-1.26.4 omero-py-5.19.6 portalocker-3.1.1 requests-2.32.3 urllib3-1.26.20
01:20:26 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:20:27 Collecting omero-metadata
01:20:27   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-6of5r8y_/omero-metadata_cc03f21e4b4b4b0d891789050f76d22a
01:20:27   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-6of5r8y_/omero-metadata_cc03f21e4b4b4b0d891789050f76d22a
01:20:29   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 3eca9574ad17735a713f7885c992b857dd5023d7
01:20:29   Installing build dependencies: started
01:20:31   Installing build dependencies: finished with status 'done'
01:20:31   Getting requirements to build wheel: started
01:20:31   Getting requirements to build wheel: finished with status 'done'
01:20:31   Preparing metadata (pyproject.toml): started
01:20:31   Preparing metadata (pyproject.toml): finished with status 'done'
01:20:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.6)
01:20:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
01:20:31 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.5)
01:20:32 Collecting pandas (from omero-metadata)
01:20:32   Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
01:20:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
01:20:32 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:20:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:20:32 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
01:20:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (11.1.0)
01:20:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:20:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
01:20:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.1.1)
01:20:32 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (3.0.2)
01:20:32 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:20:32   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:20:32 Collecting pytz>=2020.1 (from pandas->omero-metadata)
01:20:32   Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
01:20:32 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
01:20:32   Using cached tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB)
01:20:32 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
01:20:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.1)
01:20:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
01:20:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.12.14)
01:20:32 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
01:20:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:20:33 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
01:20:33 Using cached tzdata-2025.1-py2.py3-none-any.whl (346 kB)
01:20:33 Building wheels for collected packages: omero-metadata
01:20:33   Building wheel for omero-metadata (pyproject.toml): started
01:20:33   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:20:33   Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39249 sha256=e0a02d5ca030f7e41b42dc29d8923b79e5c9dbd0e97b587deeef3d2a3da662c4
01:20:33   Stored in directory: /tmp/pip-ephem-wheel-cache-b4h09eax/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
01:20:33 Successfully built omero-metadata
01:20:33 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:20:42 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2025.1
01:20:42 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:20:42 Collecting omero-cli-render
01:20:42   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-rx64bc8i/omero-cli-render_ec70bc13bd6c4fa4a2638d0d7312b557
01:20:42   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-rx64bc8i/omero-cli-render_ec70bc13bd6c4fa4a2638d0d7312b557
01:20:43   Running command git checkout -b merge_ci --track origin/merge_ci
01:20:43   Switched to a new branch 'merge_ci'
01:20:43   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:20:43   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 9b21a34c5b7709eeca64a8b40130340100bc18f0
01:20:43   Installing build dependencies: started
01:20:45   Installing build dependencies: finished with status 'done'
01:20:45   Getting requirements to build wheel: started
01:20:45   Getting requirements to build wheel: finished with status 'done'
01:20:45   Preparing metadata (pyproject.toml): started
01:20:46   Preparing metadata (pyproject.toml): finished with status 'done'
01:20:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
01:20:46 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.6)
01:20:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
01:20:46 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:20:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:20:46 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
01:20:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.1.0)
01:20:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:20:46 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
01:20:46 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.1.1)
01:20:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.1)
01:20:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
01:20:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.12.14)
01:20:46 Building wheels for collected packages: omero-cli-render
01:20:46   Building wheel for omero-cli-render (pyproject.toml): started
01:20:46   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:20:46   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19580 sha256=15a442d4f16c5938a44ab7db09df429f2d281dd2ecde76462184de99b548c5ac
01:20:46   Stored in directory: /tmp/pip-ephem-wheel-cache-fg8p30cd/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
01:20:46 Successfully built omero-cli-render
01:20:46 Installing collected packages: omero-cli-render
01:20:46 Successfully installed omero-cli-render-0.8.2.dev0
01:20:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:20:47 Collecting omero-cli-duplicate
01:20:47   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-vzh246y1/omero-cli-duplicate_d72681f1af4e4d41a3b407172bb39c06
01:20:47   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-vzh246y1/omero-cli-duplicate_d72681f1af4e4d41a3b407172bb39c06
01:20:48   Running command git checkout -b merge_ci --track origin/merge_ci
01:20:48   Switched to a new branch 'merge_ci'
01:20:48   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:20:48   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 94a586b6fffc20c41d9bf77737b2822a2d33f65f
01:20:48   Installing build dependencies: started
01:20:50   Installing build dependencies: finished with status 'done'
01:20:50   Getting requirements to build wheel: started
01:20:50   Getting requirements to build wheel: finished with status 'done'
01:20:50   Preparing metadata (pyproject.toml): started
01:20:50   Preparing metadata (pyproject.toml): finished with status 'done'
01:20:50 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6)
01:20:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
01:20:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:20:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:20:50 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
01:20:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
01:20:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
01:20:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:20:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
01:20:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
01:20:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
01:20:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
01:20:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.12.14)
01:20:50 Building wheels for collected packages: omero-cli-duplicate
01:20:50   Building wheel for omero-cli-duplicate (pyproject.toml): started
01:20:51   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:20:51   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11507 sha256=0410547a74e8894f7b930c6056054706d9c7f5998f82c920ab7176f2c2428f93
01:20:51   Stored in directory: /tmp/pip-ephem-wheel-cache-0z81brvy/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
01:20:51 Successfully built omero-cli-duplicate
01:20:51 Installing collected packages: omero-cli-duplicate
01:20:51 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:20:51 + pip install omero-certificates
01:20:51 Collecting omero-certificates
01:20:51   Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
01:20:51 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6)
01:20:51 Collecting distro==1.8.0 (from omero-certificates)
01:20:51   Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
01:20:51 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
01:20:51 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:20:51 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:20:51 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
01:20:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
01:20:51 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
01:20:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:20:51 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
01:20:51 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
01:20:51 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
01:20:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
01:20:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.12.14)
01:20:51 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
01:20:51 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
01:20:52 Installing collected packages: distro, omero-certificates
01:20:53 Successfully installed distro-1.8.0 omero-certificates-0.3.2
01:20:53 + for x in *.tar.gz
01:20:53 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:20:53 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:20:53   Installing build dependencies: started
01:20:55   Installing build dependencies: finished with status 'done'
01:20:55   Getting requirements to build wheel: started
01:20:56   Getting requirements to build wheel: finished with status 'done'
01:20:56   Preparing metadata (pyproject.toml): started
01:20:56   Preparing metadata (pyproject.toml): finished with status 'done'
01:20:56 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.6)
01:20:56 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
01:20:56 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:20:56 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:20:56 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
01:20:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
01:20:56 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
01:20:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:20:56 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
01:20:56 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
01:20:56 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
01:20:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:20:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.12.14)
01:20:56 Building wheels for collected packages: omero-dropbox
01:20:56   Building wheel for omero-dropbox (pyproject.toml): started
01:20:56   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:20:56   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49107 sha256=35549f727ce889db408f90616f5e80347506818602482dc77ee4796d39bb7ec5
01:20:56   Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
01:20:56 Successfully built omero-dropbox
01:20:56 Installing collected packages: omero-dropbox
01:20:56 Successfully installed omero-dropbox-5.7.1.dev0
01:20:57 + for x in *.tar.gz
01:20:57 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
01:20:57 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:20:57   Installing build dependencies: started
01:20:59   Installing build dependencies: finished with status 'done'
01:20:59   Getting requirements to build wheel: started
01:20:59   Getting requirements to build wheel: finished with status 'done'
01:20:59   Preparing metadata (pyproject.toml): started
01:21:00   Preparing metadata (pyproject.toml): finished with status 'done'
01:21:00 Building wheels for collected packages: omero_marshal
01:21:00   Building wheel for omero_marshal (pyproject.toml): started
01:21:00   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:21:00   Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88094 sha256=5ca8c45c041d995fcf847093ccc53d7933316bb200b5fed481ff1dadd7dd037c
01:21:00   Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
01:21:00 Successfully built omero_marshal
01:21:00 Installing collected packages: omero_marshal
01:21:00 Successfully installed omero_marshal-0.9.1.dev0
01:21:00 + for x in *.tar.gz
01:21:00 + pip install -U omero_py-5.19.7.dev0.tar.gz
01:21:01 Processing ./omero_py-5.19.7.dev0.tar.gz
01:21:01   Installing build dependencies: started
01:21:03   Installing build dependencies: finished with status 'done'
01:21:03   Getting requirements to build wheel: started
01:21:03   Getting requirements to build wheel: finished with status 'done'
01:21:03   Preparing metadata (pyproject.toml): started
01:21:03   Preparing metadata (pyproject.toml): finished with status 'done'
01:21:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.20)
01:21:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.4.4)
01:21:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.0.0)
01:21:03 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (1.26.4)
01:21:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (11.1.0)
01:21:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (6.0.2)
01:21:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.6.5)
01:21:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (2.32.3)
01:21:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.7.dev0) (3.1.1)
01:21:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.4.1)
01:21:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (3.10)
01:21:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.7.dev0) (2024.12.14)
01:21:03 Building wheels for collected packages: omero-py
01:21:03   Building wheel for omero-py (pyproject.toml): started
01:21:04   Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:21:04   Created wheel for omero-py: filename=omero_py-5.19.7.dev0-py3-none-any.whl size=2783322 sha256=22ac19730e2723faeec3b0379d3a6c3501dd20006eae91cba8c9329af815c198
01:21:04   Stored in directory: /home/omero/.cache/pip/wheels/f7/4b/64/80f70975ab0fd7430ae6a8e09a093688abe603abcb5090fc1b
01:21:05 Successfully built omero-py
01:21:05 Installing collected packages: omero-py
01:21:05   Attempting uninstall: omero-py
01:21:05     Found existing installation: omero-py 5.19.6
01:21:05     Uninstalling omero-py-5.19.6:
01:21:05       Successfully uninstalled omero-py-5.19.6
01:21:07 Successfully installed omero-py-5.19.7.dev0
01:21:07 + for x in *.tar.gz
01:21:07 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
01:21:08 Processing ./omero_scripts-5.9.1.dev0.tar.gz
01:21:08   Installing build dependencies: started
01:21:10   Installing build dependencies: finished with status 'done'
01:21:10   Getting requirements to build wheel: started
01:21:10   Getting requirements to build wheel: finished with status 'done'
01:21:10   Preparing metadata (pyproject.toml): started
01:21:10   Preparing metadata (pyproject.toml): finished with status 'done'
01:21:10 Building wheels for collected packages: omero-scripts
01:21:10   Building wheel for omero-scripts (pyproject.toml): started
01:21:10   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:21:10   Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136850 sha256=917ef00f20b9c14e98d04e2060bc53c6dbbf4d3c312f3f1cd09b81e2acc348fe
01:21:10   Stored in directory: /home/omero/.cache/pip/wheels/4d/ea/13/654c1b7c00351342c84d3e545702a0063ab8e12d260d83323c
01:21:11 Successfully built omero-scripts
01:21:11 Installing collected packages: omero-scripts
01:21:11 Successfully installed omero-scripts-5.9.1.dev0
01:21:11 + for x in *.tar.gz
01:21:11 + pip install -U omero_web-5.28.1.dev0.tar.gz
01:21:11 Processing ./omero_web-5.28.1.dev0.tar.gz
01:21:12   Installing build dependencies: started
01:21:14   Installing build dependencies: finished with status 'done'
01:21:14   Getting requirements to build wheel: started
01:21:14   Getting requirements to build wheel: finished with status 'done'
01:21:14   Preparing metadata (pyproject.toml): started
01:21:14   Preparing metadata (pyproject.toml): finished with status 'done'
01:21:14 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (5.19.7.dev0)
01:21:14 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.28.1.dev0)
01:21:14   Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:21:15 Collecting Django<4.3,>=4.2.3 (from omero-web==5.28.1.dev0)
01:21:15   Using cached Django-4.2.18-py3-none-any.whl.metadata (4.1 kB)
01:21:15 Collecting django-pipeline (from omero-web==5.28.1.dev0)
01:21:15   Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
01:21:15 Collecting django-cors-headers==3.7.0 (from omero-web==5.28.1.dev0)
01:21:15   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:21:15 Collecting django-csp (from omero-web==5.28.1.dev0)
01:21:15   Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:21:15 Collecting whitenoise>=5.3.0 (from omero-web==5.28.1.dev0)
01:21:15   Using cached whitenoise-6.8.2-py3-none-any.whl.metadata (3.6 kB)
01:21:15 Collecting gunicorn>=19.3 (from omero-web==5.28.1.dev0)
01:21:15   Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:21:15 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (0.9.1.dev0)
01:21:15 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (11.1.0)
01:21:15 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (2024.2)
01:21:15 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (3.1.1)
01:21:15 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.28.1.dev0) (24.2)
01:21:15 Collecting importlib-resources (from omero-web==5.28.1.dev0)
01:21:15   Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
01:21:16 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:21:16   Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:21:16 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:21:16   Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
01:21:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.20)
01:21:16 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.4.4)
01:21:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.0.0)
01:21:16 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (1.26.4)
01:21:16 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (6.0.2)
01:21:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.6.5)
01:21:16 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.28.1.dev0) (2.32.3)
01:21:16 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (from django-pipeline->omero-web==5.28.1.dev0) (53.0.0)
01:21:16 Collecting wheel (from django-pipeline->omero-web==5.28.1.dev0)
01:21:16   Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
01:21:16 Requirement already satisfied: zipp>=3.1.0 in ./.venv3/lib/python3.9/site-packages (from importlib-resources->omero-web==5.28.1.dev0) (3.21.0)
01:21:17 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.28.1.dev0)
01:21:17   Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:21:17 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.4.1)
01:21:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (3.10)
01:21:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.28.1.dev0) (2024.12.14)
01:21:17 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:21:17 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:21:17 Using cached Django-4.2.18-py3-none-any.whl (8.0 MB)
01:21:17 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:21:17 Using cached whitenoise-6.8.2-py3-none-any.whl (20 kB)
01:21:17 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:21:17 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
01:21:17 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
01:21:17 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:21:17 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
01:21:17 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
01:21:17 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:21:17 Building wheels for collected packages: omero-web
01:21:17   Building wheel for omero-web (pyproject.toml): started
01:21:19   Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:21:19   Created wheel for omero-web: filename=omero_web-5.28.1.dev0-py3-none-any.whl size=2770880 sha256=3d639e7ee38caa6264b6bc659955f047743e8838ed8b07fcf2e37901d3f88cc1
01:21:19   Stored in directory: /home/omero/.cache/pip/wheels/97/1e/88/508867809512b265cdeb53be905e01f64ea0b8d6c0b64f8ebd
01:21:19 Successfully built omero-web
01:21:19 Installing collected packages: whitenoise, wheel, typing-extensions, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, django-pipeline, asgiref, Django, django-csp, django-cors-headers, omero-web
01:21:22 Successfully installed Django-4.2.18 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.28.1.dev0 sqlparse-0.5.3 typing-extensions-4.12.2 wheel-0.45.1 whitenoise-6.8.2
01:21:22 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:21:23 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:21:23 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:21:23 --2025-01-27 01:21:23--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:21:23 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.108.133, ...
01:21:23 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
01:21:23 HTTP request sent, awaiting response... 200 OK
01:21:23 Length: 111766 (109K) [text/plain]
01:21:23 Saving to: ‘Figure_To_Pdf.py’
01:21:23 
01:21:23      0K .......... .......... .......... .......... .......... 45% 3.38M 0s
01:21:23     50K .......... .......... .......... .......... .......... 91% 4.77M 0s
01:21:23    100K .........                                             100%  221M=0.02s
01:21:23 
01:21:23 2025-01-27 01:21:23 (4.31 MB/s) - ‘Figure_To_Pdf.py’ saved [111766/111766]
01:21:23 
01:21:23 + chmod 755 Figure_To_Pdf.py
01:21:23 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:21:23 + omero config set omero.db.name OMERO-server
01:21:25 + omero config set omero.db.host pg
01:21:26 + omero config set omero.db.user postgres
01:21:28 + omero config set omero.data.dir /home/omero/omero-server-data
01:21:30 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:21:31 + omero config set omero.db.poolsize 25
01:21:33 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:21:34 + omero config set omero.security.trustStorePassword changeit
01:21:36 + omero config set omero.mail.config true
01:21:38 + omero config set omero.mail.from qa@openmicroscopy.org.uk
01:21:39 + omero config set omero.mail.host smtp.dundee.ac.uk
01:21:41 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:21:42 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:21:44 + omero certificates
01:21:45 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
01:21:45 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:21:45 + '[' false = true ']'
01:21:45 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:21:45 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:21:45 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:21:46 2025-01-27 01:21:46,148 [    omego.db] DEBUG            dbcommand => upgrade
01:21:46 2025-01-27 01:21:46,148 [    omego.db] DEBUG               dbhost => localhost
01:21:46 2025-01-27 01:21:46,148 [    omego.db] DEBUG               dbname => OMERO-server
01:21:46 2025-01-27 01:21:46,148 [    omego.db] DEBUG               dbpass => omero
01:21:46 2025-01-27 01:21:46,148 [    omego.db] DEBUG               dbuser => omero
01:21:46 2025-01-27 01:21:46,148 [    omego.db] DEBUG             rootpass => omero
01:21:46 2025-01-27 01:21:46,148 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:21:46 2025-01-27 01:21:46,148 [omego.extern] INFO  Executing : omero version
01:21:47 OMERO.py version:
01:21:47 OMERO.server version:
01:21:47 5.6.3-531-bbc148294a-ice36
01:21:47 5.19.7.dev0
01:21:47 2025-01-27 01:21:47,935 [omego.extern] INFO  Completed [1.787 s]
01:21:47 2025-01-27 01:21:47,935 [omego.extern] DEBUG Using omero CLI from omero
01:21:47 2025-01-27 01:21:47,935 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
01:21:47 2025-01-27 01:21:47,935 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:21:47 2025-01-27 01:21:47,935 [omego.extern] INFO  Executing : omero config get --show-password
01:21:49 2025-01-27 01:21:49,588 [omego.extern] INFO  Completed [1.653 s]
01:21:49 2025-01-27 01:21:49,589 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:21:49 2025-01-27 01:21:49,590 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
01:21:50 2025-01-27 01:21:50,312 [omego.extern] INFO  Completed [0.723 s]
01:21:50 2025-01-27 01:21:50,313 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n'
01:21:50 2025-01-27 01:21:50,313 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.4
01:21:50 
01:21:50 2025-01-27 01:21:50,313 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:21:50 2025-01-27 01:21:50,313 [omego.extern] INFO  Executing : omero config get --show-password
01:21:52 2025-01-27 01:21:52,051 [omego.extern] INFO  Completed [1.738 s]
01:21:52 2025-01-27 01:21:52,051 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:21:52 2025-01-27 01:21:52,051 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
01:21:52 2025-01-27 01:21:52,113 [omego.extern] INFO  Completed [0.061 s]
01:21:52 2025-01-27 01:21:52,113 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
01:21:52 2025-01-27 01:21:52,113 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:21:52 2025-01-27 01:21:52,113 [omego.extern] INFO  Running [current environment]: omero config get --show-password
01:21:52 2025-01-27 01:21:52,113 [omego.extern] INFO  Executing : omero config get --show-password
01:21:53 2025-01-27 01:21:53,741 [omego.extern] INFO  Completed [1.628 s]
01:21:53 2025-01-27 01:21:53,742 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
01:21:53 2025-01-27 01:21:53,742 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
01:21:54 2025-01-27 01:21:54,200 [omego.extern] INFO  Completed [0.458 s]
01:21:54 2025-01-27 01:21:54,200 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
01:21:54 2025-01-27 01:21:54,200 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
01:21:54 2025-01-27 01:21:54,202 [    omego.db] INFO  Database is already at OMERO5.4__0
01:21:54 + export LANG=en_US.UTF-8
01:21:54 + LANG=en_US.UTF-8
01:21:54 + export LANGUAGE=en_US:en
01:21:54 + LANGUAGE=en_US:en
01:21:54 + export LC_ALL=en_US.UTF-8
01:21:54 + LC_ALL=en_US.UTF-8
01:21:54 + BUILD_ID=DONT_KILL_ME
01:21:54 + omero admin start
01:22:05 No descriptor given. Using etc/grid/default.xml
01:22:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
01:22:17 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
01:22:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
01:22:17 Waiting on startup. Use CTRL-C to exit
01:22:17 + omero admin waitup
01:22:19 Waiting on startup. Use CTRL-C to exit
01:22:19 + omero admin diagnostics
01:22:20 
01:22:20 ================================================================================
01:22:20 OMERO Diagnostics (admin)
01:22:20 ================================================================================
01:22:20         
01:22:20 Commands:   java -version                  11.0.24   (/usr/bin/java)
01:22:21 Commands:   python -V                      3.9.18    (/home/omero/workspace/OMERO-server/.venv3/bin/python)
01:22:21 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
01:22:21 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
01:22:21 Commands:   psql --version                 16.4      (/usr/bin/psql)
01:22:21 Commands:   openssl version                3.0.71    (/usr/bin/openssl)
01:22:21 
01:22:21 Component:  OMERO.py                       5.19.7.dev0
01:22:21 Component:  OMERO.server                   5.6.3-531-bbc148294a-ice36
01:22:21 
01:22:21 Server:     icegridnode                    running
01:22:21 Server:     Blitz-0                        active (pid = 33915, enabled)
01:22:21 Server:     Indexer-0                      activating (enabled)
01:22:21 Server:     OMERO.Glacier2                 active (pid = 33943, enabled)
01:22:21 Server:     OMERO.IceStorm                 active (pid = 33950, enabled)
01:22:21 Server:     Processor-0                    active (pid = 33982, enabled)
01:22:21 Server:     Tables-0                       active (pid = 33966, enabled)
01:22:21 
01:22:21 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
01:22:21 Log files:  Blitz-0.log                    30.6 KB       errors=0    warnings=1   
01:22:21 Log files:  DropBox.log                    n/a
01:22:21 Log files:  FileServer.log                 n/a
01:22:21 Log files:  Indexer-0.log                  598 B        
01:22:21 Log files:  MonitorServer.log              n/a
01:22:21 Log files:  Processor-0.log                735 B        
01:22:21 Log files:  Tables-0.log                   961 B        
01:22:21 Log files:  TestDropBox.log                n/a
01:22:21 Log files:  master.err                     180 B        
01:22:21 Log files:  master.out                     30.1 KB      
01:22:21 Log files:  Total size                     0.06 MB
01:22:21 
01:22:21 
01:22:21 Environment:OMERO_HOME=(unset)             
01:22:21 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
01:22:21 Environment:OMERO_NODE=(unset)             
01:22:21 Environment:OMERO_MASTER=(unset)           
01:22:21 Environment:OMERO_USERDIR=(unset)          
01:22:21 Environment:OMERO_TMPDIR=(unset)           
01:22:21 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
01:22:21 Environment:PYTHONPATH=(unset)             
01:22:21 Environment:ICE_HOME=/opt/ice-3.6.5        
01:22:21 Environment:LD_LIBRARY_PATH=(unset)        
01:22:21 Environment:DYLD_LIBRARY_PATH=(unset)      
01:22:21 
01:22:21 OMERO SSL port:4064                           
01:22:21 OMERO TCP port:4063                           
01:22:21 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
01:22:21 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
01:22:21 
01:22:21 JVM settings: Blitz-${index}                -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:21 JVM settings: Indexer-${index}              -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:21 JVM settings: PixelData-${index}            -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:21 JVM settings: Repository-${index}           -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
01:22:21 
01:22:21 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.1.0-SNAPSHOT	27 January 2025	04cfa2fab46b3865f11d48425969b2f7abd2c4bb
01:22:21 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.1.0-SNAPSHOT	27 January 2025	04cfa2fab46b3865f11d48425969b2f7abd2c4bb
01:22:21 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.1.0-SNAPSHOT	27 January 2025	04cfa2fab46b3865f11d48425969b2f7abd2c4bb
01:22:21 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.1.1-SNAPSHOT	27 January 2025	57a01c5260e29e524b4ea87a206f8e39a37cd5a3
01:22:21 Jar:        lib/server/ome-common.jar      OME Common Java	6.0.26-SNAPSHOT	27 January 2025	57a01c5260e29e524b4ea87a206f8e39a37cd5a3
01:22:21 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5-SNAPSHOT	27 January 2025	57a01c5260e29e524b4ea87a206f8e39a37cd5a3
01:22:21 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4-SNAPSHOT	27 January 2025	57a01c5260e29e524b4ea87a206f8e39a37cd5a3
01:22:21 Jar:        lib/server/ome-poi.jar         OME POI	5.3.10-SNAPSHOT	27 January 2025	57a01c5260e29e524b4ea87a206f8e39a37cd5a3
01:22:21 Jar:        lib/server/ome-xml.jar         OME XML library	6.5.0-SNAPSHOT	27 January 2025	57a01c5260e29e524b4ea87a206f8e39a37cd5a3
01:22:21 Jar:        lib/server/omero-blitz.jar     jar	5.8.1-SNAPSHOT		
01:22:21 Jar:        lib/server/omero-common.jar    jar	5.7.1-SNAPSHOT		
01:22:21 Jar:        lib/server/omero-gateway.jar   jar	5.10.1-SNAPSHOT		
01:22:21 Jar:        lib/server/omero-model.jar     jar	5.7.1-SNAPSHOT		
01:22:21 Jar:        lib/server/omero-renderer.jar  jar	5.6.1-SNAPSHOT		
01:22:21 Jar:        lib/server/omero-romio.jar     jar	5.8.1-SNAPSHOT		
01:22:21 Jar:        lib/server/omero-server.jar    jar	5.7.1-SNAPSHOT		
01:22:21 + deactivate
01:22:21 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:22:21 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:22:21 + export PATH
01:22:21 + unset _OLD_VIRTUAL_PATH
01:22:21 + '[' -n '' ']'
01:22:21 + '[' -n /bin/bash -o -n '' ']'
01:22:21 + hash -r
01:22:21 + '[' -n '' ']'
01:22:21 + unset VIRTUAL_ENV
01:22:21 + '[' '!' '' = nondestructive ']'
01:22:21 + unset -f deactivate
01:22:22 Finished: SUCCESS