00:45:49 Started by upstream project "Trigger" build number 61
00:45:49 originally caused by:
00:45:49 Started by timer
00:45:49 Running as SYSTEM
00:45:49 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:49 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5740852023510563464.sh
00:45:49 + source /home/settings.env
00:45:49 ++ OMERO_DB_HOST=pg
00:45:49 ++ OMERO_DB_USER=postgres
00:45:49 ++ OMERO_DB_PASS=
00:45:49 ++ OMERO_ROOT_PASS=omero
00:45:49 ++ OMERO_DATA_DIR=/OMERO
00:45:49 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:49 + OMERO_DB_NAME=OMERO-server
00:45:49 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:49 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:49 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:49 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:49 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:49 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:49 ++ deactivate nondestructive
00:45:49 ++ '[' -n '' ']'
00:45:49 ++ '[' -n '' ']'
00:45:49 ++ hash -r
00:45:49 ++ '[' -n '' ']'
00:45:49 ++ unset VIRTUAL_ENV
00:45:49 ++ unset VIRTUAL_ENV_PROMPT
00:45:49 ++ '[' '!' nondestructive = nondestructive ']'
00:45:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:49 ++ export VIRTUAL_ENV
00:45:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:49 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:49 ++ export PATH
00:45:49 ++ '[' -n '' ']'
00:45:49 ++ '[' -z '' ']'
00:45:49 ++ _OLD_VIRTUAL_PS1=
00:45:49 ++ PS1='(.venv3) '
00:45:49 ++ export PS1
00:45:49 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:49 ++ export VIRTUAL_ENV_PROMPT
00:45:49 ++ hash -r
00:45:49 + omero admin stop
00:45:51 Waiting on shutdown. Use CTRL-C to exit
00:45:51 .+ sleep 5
00:46:06 + deactivate
00:46:06 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:46:06 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:06 + export PATH
00:46:06 + unset _OLD_VIRTUAL_PATH
00:46:06 + '[' -n '' ']'
00:46:06 + hash -r
00:46:06 + '[' -n '' ']'
00:46:06 + unset VIRTUAL_ENV
00:46:06 + unset VIRTUAL_ENV_PROMPT
00:46:06 + '[' '!' '' = nondestructive ']'
00:46:06 + unset -f deactivate
00:46:06 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:46:07 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:46:10 + '[' false = true ']'
00:46:10 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:46:10 Skipping PURGE_DATA:CleanDbAndRepo
00:46:10 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:46:12 Copied 1 artifact from "OMERO-build" build number 38
00:46:12 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 34
00:46:12 Copied 2 artifacts from "OMERO-build-build" build number 38
00:46:12 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 31
00:46:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12539781869038211194.sh
00:46:12 + source /home/settings.env
00:46:12 ++ OMERO_DB_HOST=pg
00:46:12 ++ OMERO_DB_USER=postgres
00:46:12 ++ OMERO_DB_PASS=
00:46:12 ++ OMERO_ROOT_PASS=omero
00:46:12 ++ OMERO_DATA_DIR=/OMERO
00:46:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:12 + OMERO_DB_NAME=OMERO-server
00:46:12 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:12 + mkdir -p /home/omero/omero-server-data
00:46:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:12 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:12 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:12 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:12 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:12 ++ ls OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38.zip
00:46:12 + ZIP=OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38.zip
00:46:12 + '[' '!' -z '' ']'
00:46:12 + DIST=OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38
00:46:12 + unzip OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38.zip
00:46:12 Archive: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38.zip
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/blitz/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/grid/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/profiles/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/error/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/grid/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/luts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/luts/janelia/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/luts/matplotlib/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/luts/ncsa_paledit/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/luts/seaborn/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/luts/wcif/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/omero/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/omero/analysis_scripts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/omero/annotation_scripts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/omero/export_scripts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/omero/figure_scripts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/omero/import_scripts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/scripts/omero/util_scripts/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/server/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/share/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/share/licenses/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/misc/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__1/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__10/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__11/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__2/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__3/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__4/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__5/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__6/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__7/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__8/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3A__9/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3__4/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3__5/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3__6/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO3__7/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.1__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.2__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.2__0/t/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.3__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.4__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.0__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.1__1/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.2__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.3__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4DEV__1/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4DEV__2/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4DEV__3/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/var/
00:46:12 creating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/var/tmp/
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/LICENSE.txt
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/backup.cfg
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/blitz/mail-senders.example
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/blitz/mail-server.example
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/build.properties
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/env.bat
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/env.sh
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/hibernate.properties
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/ice.config
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/logback-cli.xml
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/logback-indexing-cli.xml
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/logback-indexing.xml
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/logback.xml
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/mime.types
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/node1.cfg
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/node2.cfg
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/omero.properties
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/profiles/psql
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/rollover.cfg
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/Windows.cfg
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/error/maintainance.html
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/grid/README
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/grid/default.xml
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/grid/templates.xml
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/grid/windefault.xml
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/ice.config
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/internal.cfg
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/master.cfg
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/templates/robot.template
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/etc/testdropbox.config
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/history.rst
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/OMEZarrReader.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/accessors-smart.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/activation.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/aggdesigner-algorithm.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/aircompressor.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/antlr.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/aopalliance.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/apiguardian-api.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/asm.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/avatica-core.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/avatica-metrics.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/aws-java-sdk-core.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/aws-java-sdk-kms.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/aws-java-sdk-s3.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/base.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-anim.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-awt-util.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-bridge.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-codec.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-constants.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-css.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-dom.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-ext.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-gvt.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-i18n.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-parser.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-script.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-shared-resources.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-svg-dom.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-svggen.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-transcoder.jar
00:46:12 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/lib/client/batik-util.jar
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00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO4__0/OMERO3A__11.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/psql-footer.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/psql-header.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/schema.sql
00:46:15 inflating: OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38/sql/psql/OMERO5.4__0/views.sql
00:46:15 + rm -f OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38.zip
00:46:15 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-586-a3f77d45b1-ice36-b38 /home/omero/workspace/OMERO-server/OMERO.server
00:46:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:15 --2026-01-30 00:46:15-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:15 HTTP request sent, awaiting response... 200 OK
00:46:15 Length: 889211 (868K) [application/java-archive]
00:46:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:46:15
00:46:15 0K .......... .......... .......... .......... .......... 5% 33.6M 0s
00:46:15 50K .......... .......... .......... .......... .......... 11% 3.53M 0s
00:46:15 100K .......... .......... .......... .......... .......... 17% 77.5M 0s
00:46:15 150K .......... .......... .......... .......... .......... 23% 3.78M 0s
00:46:15 200K .......... .......... .......... .......... .......... 28% 166M 0s
00:46:15 250K .......... .......... .......... .......... .......... 34% 61.3M 0s
00:46:15 300K .......... .......... .......... .......... .......... 40% 68.4M 0s
00:46:15 350K .......... .......... .......... .......... .......... 46% 4.71M 0s
00:46:15 400K .......... .......... .......... .......... .......... 51% 32.6M 0s
00:46:15 450K .......... .......... .......... .......... .......... 57% 117M 0s
00:46:15 500K .......... .......... .......... .......... .......... 63% 37.0M 0s
00:46:15 550K .......... .......... .......... .......... .......... 69% 163M 0s
00:46:15 600K .......... .......... .......... .......... .......... 74% 115M 0s
00:46:15 650K .......... .......... .......... .......... .......... 80% 4.23M 0s
00:46:15 700K .......... .......... .......... .......... .......... 86% 37.5M 0s
00:46:15 750K .......... .......... .......... .......... .......... 92% 303M 0s
00:46:15 800K .......... .......... .......... .......... .......... 97% 78.5M 0s
00:46:15 850K .......... ........ 100% 182M=0.06s
00:46:15
00:46:15 2026-01-30 00:46:15 (14.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:46:15
00:46:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:46:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:15 --2026-01-30 00:46:15-- https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:46:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:46:15 HTTP request sent, awaiting response... 200 OK
00:46:15 Length: 73309 (72K) [application/java-archive]
00:46:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
00:46:15
00:46:15 0K .......... .......... .......... .......... .......... 69% 35.3M 0s
00:46:15 50K .......... .......... . 100% 1.68M=0.01s
00:46:15
00:46:15 2026-01-30 00:46:15 (5.01 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
00:46:15
00:46:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:46:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:15 --2026-01-30 00:46:15-- https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:46:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:16 HTTP request sent, awaiting response... 200 OK
00:46:16 Length: 63303 (62K) [application/java-archive]
00:46:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
00:46:16
00:46:16 0K .......... .......... .......... .......... .......... 80% 37.3M 0s
00:46:16 50K .......... . 100% 180M=0.001s
00:46:16
00:46:16 2026-01-30 00:46:16 (44.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
00:46:16
00:46:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:46:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:16 --2026-01-30 00:46:16-- https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:46:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:16 HTTP request sent, awaiting response... 200 OK
00:46:16 Length: 1271272 (1.2M) [application/java-archive]
00:46:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
00:46:16
00:46:16 0K .......... .......... .......... .......... .......... 4% 36.9M 0s
00:46:16 50K .......... .......... .......... .......... .......... 8% 3.58M 0s
00:46:16 100K .......... .......... .......... .......... .......... 12% 3.64M 0s
00:46:16 150K .......... .......... .......... .......... .......... 16% 191M 0s
00:46:16 200K .......... .......... .......... .......... .......... 20% 112M 0s
00:46:16 250K .......... .......... .......... .......... .......... 24% 47.6M 0s
00:46:16 300K .......... .......... .......... .......... .......... 28% 72.9M 0s
00:46:16 350K .......... .......... .......... .......... .......... 32% 4.27M 0s
00:46:16 400K .......... .......... .......... .......... .......... 36% 107M 0s
00:46:16 450K .......... .......... .......... .......... .......... 40% 303M 0s
00:46:16 500K .......... .......... .......... .......... .......... 44% 31.6M 0s
00:46:16 550K .......... .......... .......... .......... .......... 48% 267M 0s
00:46:16 600K .......... .......... .......... .......... .......... 52% 4.30M 0s
00:46:16 650K .......... .......... .......... .......... .......... 56% 26.0M 0s
00:46:16 700K .......... .......... .......... .......... .......... 60% 304M 0s
00:46:16 750K .......... .......... .......... .......... .......... 64% 126M 0s
00:46:16 800K .......... .......... .......... .......... .......... 68% 61.4M 0s
00:46:16 850K .......... .......... .......... .......... .......... 72% 4.66M 0s
00:46:16 900K .......... .......... .......... .......... .......... 76% 351M 0s
00:46:16 950K .......... .......... .......... .......... .......... 80% 22.4M 0s
00:46:16 1000K .......... .......... .......... .......... .......... 84% 63.0M 0s
00:46:16 1050K .......... .......... .......... .......... .......... 88% 83.7M 0s
00:46:16 1100K .......... .......... .......... .......... .......... 92% 4.86M 0s
00:46:16 1150K .......... .......... .......... .......... .......... 96% 131M 0s
00:46:16 1200K .......... .......... .......... .......... . 100% 18.8M=0.09s
00:46:16
00:46:16 2026-01-30 00:46:16 (14.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
00:46:16
00:46:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
00:46:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:16 --2026-01-30 00:46:16-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
00:46:16 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:16 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:16 HTTP request sent, awaiting response... 200 OK
00:46:16 Length: 1036468 (1012K) [application/java-archive]
00:46:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’
00:46:16
00:46:16 0K .......... .......... .......... .......... .......... 4% 34.8M 0s
00:46:16 50K .......... .......... .......... .......... .......... 9% 3.58M 0s
00:46:16 100K .......... .......... .......... .......... .......... 14% 3.97M 0s
00:46:16 150K .......... .......... .......... .......... .......... 19% 41.4M 0s
00:46:16 200K .......... .......... .......... .......... .......... 24% 43.0M 0s
00:46:16 250K .......... .......... .......... .......... .......... 29% 4.42M 0s
00:46:16 300K .......... .......... .......... .......... .......... 34% 41.5M 0s
00:46:16 350K .......... .......... .......... .......... .......... 39% 54.3M 0s
00:46:16 400K .......... .......... .......... .......... .......... 44% 31.9M 0s
00:46:16 450K .......... .......... .......... .......... .......... 49% 47.8M 0s
00:46:16 500K .......... .......... .......... .......... .......... 54% 47.2M 0s
00:46:16 550K .......... .......... .......... .......... .......... 59% 5.88M 0s
00:46:16 600K .......... .......... .......... .......... .......... 64% 28.7M 0s
00:46:16 650K .......... .......... .......... .......... .......... 69% 20.2M 0s
00:46:16 700K .......... .......... .......... .......... .......... 74% 48.8M 0s
00:46:16 750K .......... .......... .......... .......... .......... 79% 107M 0s
00:46:16 800K .......... .......... .......... .......... .......... 83% 5.93M 0s
00:46:16 850K .......... .......... .......... .......... .......... 88% 21.2M 0s
00:46:16 900K .......... .......... .......... .......... .......... 93% 78.6M 0s
00:46:16 950K .......... .......... .......... .......... .......... 98% 22.8M 0s
00:46:16 1000K .......... .. 100% 265M=0.07s
00:46:16
00:46:16 2026-01-30 00:46:16 (13.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’ saved [1036468/1036468]
00:46:16
00:46:16 + for x in *.jar
00:46:16 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:46:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:16 ++ deactivate nondestructive
00:46:16 ++ '[' -n '' ']'
00:46:16 ++ '[' -n '' ']'
00:46:16 ++ hash -r
00:46:16 ++ '[' -n '' ']'
00:46:16 ++ unset VIRTUAL_ENV
00:46:16 ++ unset VIRTUAL_ENV_PROMPT
00:46:16 ++ '[' '!' nondestructive = nondestructive ']'
00:46:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:16 ++ export VIRTUAL_ENV
00:46:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:16 ++ export PATH
00:46:16 ++ '[' -n '' ']'
00:46:16 ++ '[' -z '' ']'
00:46:16 ++ _OLD_VIRTUAL_PS1=
00:46:16 ++ PS1='(.venv3) '
00:46:16 ++ export PS1
00:46:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:16 ++ export VIRTUAL_ENV_PROMPT
00:46:16 ++ hash -r
00:46:16 + pip install -U pip
00:46:17 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:46:17 Collecting pip
00:46:17 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
00:46:17 Installing collected packages: pip
00:46:17 Attempting uninstall: pip
00:46:17 Found existing installation: pip 22.3.1
00:46:17 Uninstalling pip-22.3.1:
00:46:17 Successfully uninstalled pip-22.3.1
00:46:18 Successfully installed pip-25.3
00:46:18 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:46:18 Collecting zeroc-ice==3.6.5
00:46:19 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:46:21 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.7 MB/s 0:00:02
00:46:21 Installing collected packages: zeroc-ice
00:46:22 Successfully installed zeroc-ice-3.6.5
00:46:22 + pip install markdown
00:46:22 Collecting markdown
00:46:22 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
00:46:22 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
00:46:22 Installing collected packages: markdown
00:46:22 Successfully installed markdown-3.10.1
00:46:22 + pip install reportlab
00:46:23 Collecting reportlab
00:46:23 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
00:46:23 Collecting pillow>=9.0.0 (from reportlab)
00:46:23 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:46:23 Collecting charset-normalizer (from reportlab)
00:46:23 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:46:23 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
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00:46:23 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:46:23 Installing collected packages: pillow, charset-normalizer, reportlab
00:46:24
00:46:24 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
00:46:24 + pip install omego
00:46:25 Collecting omego
00:46:25 Using cached omego-0.7.0-py3-none-any.whl
00:46:25 Collecting future (from omego)
00:46:25 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:46:25 Collecting yaclifw>=0.1.1 (from omego)
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00:46:25 Collecting six (from yaclifw>=0.1.1->omego)
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00:46:25 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:46:25 Installing collected packages: six, future, yaclifw, omego
00:46:25
00:46:25 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:46:25 + pip install tables
00:46:26 Collecting tables
00:46:26 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:46:26 Collecting numpy>=1.20.0 (from tables)
00:46:26 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:46:26 Collecting numexpr>=2.6.2 (from tables)
00:46:26 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:46:26 Collecting packaging (from tables)
00:46:26 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:46:27 Collecting py-cpuinfo (from tables)
00:46:27 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:46:27 Collecting blosc2>=2.3.0 (from tables)
00:46:27 Downloading blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:46:27 Collecting typing-extensions>=4.4.0 (from tables)
00:46:27 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:46:27 Collecting ndindex (from blosc2>=2.3.0->tables)
00:46:27 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:46:27 Collecting msgpack (from blosc2>=2.3.0->tables)
00:46:27 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:27 Collecting requests (from blosc2>=2.3.0->tables)
00:46:27 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:46:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:46:27 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:46:27 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:46:27 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:46:27 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:46:27 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:46:27 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:46:27 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:46:27 Downloading blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:46:28 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.7/4.7 MB 20.6 MB/s 0:00:00
00:46:28 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:46:28 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
00:46:28 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:46:28 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:46:28 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:46:28 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:46:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
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00:46:28 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:46:28 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:46:31
00:46:31 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:46:31 + pip install jinja2
00:46:32 Collecting jinja2
00:46:32 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:46:32 Collecting MarkupSafe>=2.0 (from jinja2)
00:46:32 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:46:32 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:46:32 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:46:32 Installing collected packages: MarkupSafe, jinja2
00:46:32
00:46:32 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:46:32 + pip install omero-py
00:46:32 Collecting omero-py
00:46:32 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:46:32 Collecting appdirs (from omero-py)
00:46:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:46:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:46:32 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1)
00:46:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:46:32 Collecting PyYAML (from omero-py)
00:46:32 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:46:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:46:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:46:32 Collecting portalocker (from omero-py)
00:46:32 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:46:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:46:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:46:32 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:46:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:46:32 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:46:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:46:32 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:46:32 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:46:32 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:46:34
00:46:34 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:46:34 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:46:35 Collecting omero-metadata
00:46:35 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-wqyyrybd/omero-metadata_668f329508114bf094276b6f8c803d76
00:46:35 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-wqyyrybd/omero-metadata_668f329508114bf094276b6f8c803d76
00:46:35 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 39eecb6036324420c45efc578935b36871826c99
00:46:35 Installing build dependencies: started
00:46:36 Installing build dependencies: finished with status 'done'
00:46:36 Getting requirements to build wheel: started
00:46:36 Getting requirements to build wheel: finished with status 'done'
00:46:36 Preparing metadata (pyproject.toml): started
00:46:37 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:37 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:46:37 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:46:37 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:46:37 Collecting pandas (from omero-metadata)
00:46:37 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:46:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:37 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.1)
00:46:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:46:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:37 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:46:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:46:37 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:46:37 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:37 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:37 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:46:37 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:46:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:46:37 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:46:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:46:37 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:46:37 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:37 Building wheels for collected packages: omero-metadata
00:46:37 Building wheel for omero-metadata (pyproject.toml): started
00:46:37 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:37 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=e3a1af8a3e4c5bf1e2e7f5ed5beb6c5ba9b1d99151d4df541f027fe65111577d
00:46:37 Stored in directory: /tmp/pip-ephem-wheel-cache-ekc4imku/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:46:37 Successfully built omero-metadata
00:46:37 Installing collected packages: python-dateutil, pandas, omero-metadata
00:46:42
00:46:42 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:46:42 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:42 Collecting omero-cli-render
00:46:42 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-mj6k_d4i/omero-cli-render_ae8d1939508c4b429c406d39f9359da7
00:46:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-mj6k_d4i/omero-cli-render_ae8d1939508c4b429c406d39f9359da7
00:46:43 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:43 Switched to a new branch 'merge_ci'
00:46:43 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:43 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a712ffce958786161f8aeef9e6b5091231b44cf9
00:46:43 Installing build dependencies: started
00:46:44 Installing build dependencies: finished with status 'done'
00:46:44 Getting requirements to build wheel: started
00:46:44 Getting requirements to build wheel: finished with status 'done'
00:46:44 Preparing metadata (pyproject.toml): started
00:46:44 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:46:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:44 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.1)
00:46:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:46:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:44 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:46:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:46:44 Building wheels for collected packages: omero-cli-render
00:46:44 Building wheel for omero-cli-render (pyproject.toml): started
00:46:44 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:44 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=513e373217895ba9e85e4dfa3b11ab31a86016b6b6bf4cfccd4836ded18cb348
00:46:44 Stored in directory: /tmp/pip-ephem-wheel-cache-yzs3w53z/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:44 Successfully built omero-cli-render
00:46:45 Installing collected packages: omero-cli-render
00:46:45 Successfully installed omero-cli-render-0.8.2.dev0
00:46:45 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:45 Collecting omero-cli-duplicate
00:46:45 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-vpq8_nvl/omero-cli-duplicate_381e765b184d4314b23fddd68947f8cd
00:46:45 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-vpq8_nvl/omero-cli-duplicate_381e765b184d4314b23fddd68947f8cd
00:46:46 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:46 Switched to a new branch 'merge_ci'
00:46:46 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:46 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 98af7e7285a33bd6c790c50924b91cd8e185e189
00:46:46 Installing build dependencies: started
00:46:47 Installing build dependencies: finished with status 'done'
00:46:47 Getting requirements to build wheel: started
00:46:47 Getting requirements to build wheel: finished with status 'done'
00:46:47 Preparing metadata (pyproject.toml): started
00:46:47 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:47 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:46:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:47 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1)
00:46:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:46:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:47 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:46:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:46:47 Building wheels for collected packages: omero-cli-duplicate
00:46:47 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:48 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:48 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=611bf252a33d278640e79617d433be6cb693f921b4884030959ccb452899c15f
00:46:48 Stored in directory: /tmp/pip-ephem-wheel-cache-0dy5gf42/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:48 Successfully built omero-cli-duplicate
00:46:48 Installing collected packages: omero-cli-duplicate
00:46:50 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:46:50 Collecting omero-cli-zarr
00:46:50 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-x6ovcge2/omero-cli-zarr_275fed44543a4d6b9f886ed120751586
00:46:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-x6ovcge2/omero-cli-zarr_275fed44543a4d6b9f886ed120751586
00:46:51 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:52 Switched to a new branch 'merge_ci'
00:46:52 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:52 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 45ffee0b356123327208920865c802c5cf313bb7
00:46:52 Installing build dependencies: started
00:46:52 Installing build dependencies: finished with status 'done'
00:46:52 Getting requirements to build wheel: started
00:46:53 Getting requirements to build wheel: finished with status 'done'
00:46:53 Installing backend dependencies: started
00:46:54 Installing backend dependencies: finished with status 'done'
00:46:54 Preparing metadata (pyproject.toml): started
00:46:54 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
00:46:54 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:46:54 Using cached ome_zarr-0.12.2-py3-none-any.whl.metadata (2.9 kB)
00:46:54 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.1)
00:46:54 Collecting dask (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:46:54 Collecting zarr>=v3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:46:54 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached fsspec-2026.1.0-py3-none-any.whl.metadata (10 kB)
00:46:55 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:46:55 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:46:55 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:46:55 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached s3fs-2026.1.0-py3-none-any.whl.metadata (1.2 kB)
00:46:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:46:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:46:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
00:46:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.3)
00:46:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:46:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:46:55 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:46:55 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:46:55 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:46:55 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Downloading tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
00:46:55 Requirement already satisfied: packaging>=21 in ./.venv3/lib64/python3.11/site-packages (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:46:55 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:46:55 Collecting donfig>=0.8 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:46:56 Collecting google-crc32c>=1.5 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:46:56 Collecting numcodecs>=0.14 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:46:56 Requirement already satisfied: typing-extensions>=4.9 in ./.venv3/lib64/python3.11/site-packages (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:46:56 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:46:56 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:46:56 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:46:56 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:46:56 Collecting multidict<7.0,>=4.5 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:46:56 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:46:57 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:46:57 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:46:57 Collecting click>=8.1 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:46:57 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:46:57 Collecting partd>=1.4.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:46:57 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:46:57 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:46:57 Collecting locket (from partd>=1.4.0->dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:46:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:46:57 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:46:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:46:57 Collecting aiobotocore<4.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached aiobotocore-3.1.1-py3-none-any.whl.metadata (26 kB)
00:46:57 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:46:57 Collecting botocore<1.42.31,>=1.41.0 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached botocore-1.42.30-py3-none-any.whl.metadata (5.9 kB)
00:46:57 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:46:57 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:57 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:46:58 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:58 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (9.0 kB)
00:46:58 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:46:58 Using cached ome_zarr-0.12.2-py3-none-any.whl (41 kB)
00:46:58 Using cached fsspec-2026.1.0-py3-none-any.whl (201 kB)
00:46:58 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:46:58 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:46:58 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:46:58 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:46:58 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:46:58 Downloading tifffile-2026.1.28-py3-none-any.whl (233 kB)
00:46:58 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:46:58 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:46:58 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:46:58 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:46:58 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:46:58 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:46:58 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:46:58 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
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00:46:58 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:46:58 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
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00:46:58 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:46:58 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:46:58 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:46:58 Using cached s3fs-2026.1.0-py3-none-any.whl (30 kB)
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00:46:58 Using cached botocore-1.42.30-py3-none-any.whl (14.6 MB)
00:46:58 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:46:58 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
00:46:58 Building wheels for collected packages: omero-cli-zarr
00:46:58 Building wheel for omero-cli-zarr (pyproject.toml): started
00:46:58 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:46:58 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev139+g45ffee0-py3-none-any.whl size=37766 sha256=7d7905d5eeac5337684a6d9644a8a2fda28b4b1278b8b97f000e2c45521fcb47
00:46:58 Stored in directory: /tmp/pip-ephem-wheel-cache-f_7wnt07/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:46:58 Successfully built omero-cli-zarr
00:46:58 Installing collected packages: zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:47:08
00:47:08 Successfully installed aiobotocore-3.1.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.30 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.1.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.12.2 omero-cli-zarr-0.5.5.dev139+g45ffee0 partd-1.4.2 propcache-0.4.1 s3fs-2026.1.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.0.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:47:08 + pip install omero-certificates
00:47:08 Collecting omero-certificates
00:47:08 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:47:08 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:47:08 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:47:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:47:08 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1)
00:47:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:47:08 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:47:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:47:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:47:08 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:47:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:47:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:47:08 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:47:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:47:08 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:47:09 Installing collected packages: omero-certificates
00:47:09 Successfully installed omero-certificates-0.4.0
00:47:09 + for x in *.tar.gz
00:47:09 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:47:09 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:47:09 Installing build dependencies: started
00:47:10 Installing build dependencies: finished with status 'done'
00:47:10 Getting requirements to build wheel: started
00:47:10 Getting requirements to build wheel: finished with status 'done'
00:47:10 Preparing metadata (pyproject.toml): started
00:47:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:10 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:47:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:47:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:47:10 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1)
00:47:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:47:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:47:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:47:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:47:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:47:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:47:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:47:10 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:47:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:47:10 Building wheels for collected packages: omero-dropbox
00:47:10 Building wheel for omero-dropbox (pyproject.toml): started
00:47:11 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:47:11 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=9ed7b3eb3a692c75bbed5d9753b39af4e2c05a878fd6f523b498758e0affa374
00:47:11 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:47:11 Successfully built omero-dropbox
00:47:11 Installing collected packages: omero-dropbox
00:47:11 Successfully installed omero-dropbox-5.7.1.dev0
00:47:11 + for x in *.tar.gz
00:47:11 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:47:11 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:47:11 Installing build dependencies: started
00:47:12 Installing build dependencies: finished with status 'done'
00:47:12 Getting requirements to build wheel: started
00:47:12 Getting requirements to build wheel: finished with status 'done'
00:47:12 Preparing metadata (pyproject.toml): started
00:47:13 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:13 Building wheels for collected packages: omero_marshal
00:47:13 Building wheel for omero_marshal (pyproject.toml): started
00:47:13 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:47:13 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=74bca4af6ce59a7fd6e47abba399e97b395d1febbf0ba34a5fb9e1c9d46ebb5a
00:47:13 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:47:13 Successfully built omero_marshal
00:47:13 Installing collected packages: omero_marshal
00:47:13 Successfully installed omero_marshal-0.9.2.dev0
00:47:13 + for x in *.tar.gz
00:47:13 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:47:14 Processing ./omero_py-5.22.0.dev0.tar.gz
00:47:14 Installing build dependencies: started
00:47:15 Installing build dependencies: finished with status 'done'
00:47:15 Getting requirements to build wheel: started
00:47:15 Getting requirements to build wheel: finished with status 'done'
00:47:15 Preparing metadata (pyproject.toml): started
00:47:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:47:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:47:15 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1)
00:47:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:47:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:47:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:47:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:47:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:47:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:47:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:47:15 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
00:47:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:47:15 Building wheels for collected packages: omero-py
00:47:15 Building wheel for omero-py (pyproject.toml): started
00:47:16 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:47:16 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786522 sha256=58959551d7f1e664c1ace22272833184f6b1ac891adf6d4f887a53d9d6c9fe1d
00:47:16 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:47:16 Successfully built omero-py
00:47:16 Installing collected packages: omero-py
00:47:16 Attempting uninstall: omero-py
00:47:16 Found existing installation: omero-py 5.21.3
00:47:16 Uninstalling omero-py-5.21.3:
00:47:17 Successfully uninstalled omero-py-5.21.3
00:47:19 Successfully installed omero-py-5.22.0.dev0
00:47:19 + for x in *.tar.gz
00:47:19 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:47:19 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:47:19 Installing build dependencies: started
00:47:20 Installing build dependencies: finished with status 'done'
00:47:20 Getting requirements to build wheel: started
00:47:20 Getting requirements to build wheel: finished with status 'done'
00:47:20 Preparing metadata (pyproject.toml): started
00:47:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:20 Building wheels for collected packages: omero-scripts
00:47:20 Building wheel for omero-scripts (pyproject.toml): started
00:47:21 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:47:21 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=db0a392862db20bec56e02f9265ad5139ef95a7d6abd7a1bf7a70f102781364f
00:47:21 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:47:21 Successfully built omero-scripts
00:47:21 Installing collected packages: omero-scripts
00:47:21 Successfully installed omero-scripts-5.10.1.dev0
00:47:21 + for x in *.tar.gz
00:47:21 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:47:21 Processing ./omero_web-5.30.2.dev0.tar.gz
00:47:22 Installing build dependencies: started
00:47:22 Installing build dependencies: finished with status 'done'
00:47:22 Getting requirements to build wheel: started
00:47:23 Getting requirements to build wheel: finished with status 'done'
00:47:23 Preparing metadata (pyproject.toml): started
00:47:23 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:23 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
00:47:23 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:47:23 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:47:23 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:47:23 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
00:47:23 Collecting django-pipeline (from omero-web==5.30.2.dev0)
00:47:23 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:47:23 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:47:23 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:47:24 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:47:24 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:47:24 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:47:24 Using cached gunicorn-24.1.1-py3-none-any.whl.metadata (4.6 kB)
00:47:24 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:47:24 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:47:24 Collecting pytz (from omero-web==5.30.2.dev0)
00:47:24 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:47:24 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:47:24 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:47:24 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:47:24 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:47:24 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:47:24 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:47:24 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:47:24 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:47:24 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:47:24 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:47:24 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1)
00:47:24 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:47:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:47:24 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:47:24 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
00:47:24 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
00:47:24 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:47:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:47:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:47:24 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:47:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:47:24 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:47:24 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
00:47:24 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:47:24 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:47:24 Using cached gunicorn-24.1.1-py3-none-any.whl (114 kB)
00:47:24 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:47:24 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:47:24 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:47:24 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:47:24 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:47:24 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:47:24 Building wheels for collected packages: omero-web
00:47:24 Building wheel for omero-web (pyproject.toml): started
00:47:25 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:47:25 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819262 sha256=b77be9c26ae706708b8615234536836c8bf4e0d884523a77f58bc7100ce31e80
00:47:25 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:47:25 Successfully built omero-web
00:47:25 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:47:29
00:47:29 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-24.1.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:47:29 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:29 --2026-01-30 00:47:29-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:29 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.111.133, ...
00:47:29 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:47:29 HTTP request sent, awaiting response... 200 OK
00:47:30 Length: 127242 (124K) [text/plain]
00:47:30 Saving to: ‘Figure_To_Pdf.py’
00:47:30
00:47:30 0K .......... .......... .......... .......... .......... 40% 3.96M 0s
00:47:30 50K .......... .......... .......... .......... .......... 80% 14.7M 0s
00:47:30 100K .......... .......... .... 100% 4.42M=0.02s
00:47:30
00:47:30 2026-01-30 00:47:30 (5.77 MB/s) - ‘Figure_To_Pdf.py’ saved [127242/127242]
00:47:30
00:47:30 + chmod 755 Figure_To_Pdf.py
00:47:30 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:47:30 + omero config set omero.db.name OMERO-server
00:47:32 + omero config set omero.db.host pg
00:47:33 + omero config set omero.db.user postgres
00:47:35 + omero config set omero.data.dir /home/omero/omero-server-data
00:47:37 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:47:39 + omero config set omero.db.poolsize 25
00:47:41 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:47:43 + omero config set omero.security.trustStorePassword changeit
00:47:44 + omero config set omero.mail.config true
00:47:46 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:47:48 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:47:50 + omero certificates
00:47:52 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:47:52 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:47:52 + '[' false = true ']'
00:47:52 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:47:52 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:47:52 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:47:52 2026-01-30 00:47:52,603 [ omego.db] DEBUG dbcommand => upgrade
00:47:52 2026-01-30 00:47:52,603 [ omego.db] DEBUG dbhost => localhost
00:47:52 2026-01-30 00:47:52,603 [ omego.db] DEBUG dbname => OMERO-server
00:47:52 2026-01-30 00:47:52,603 [ omego.db] DEBUG dbpass => omero
00:47:52 2026-01-30 00:47:52,603 [ omego.db] DEBUG dbuser => omero
00:47:52 2026-01-30 00:47:52,603 [ omego.db] DEBUG rootpass => omero
00:47:52 2026-01-30 00:47:52,603 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:47:52 2026-01-30 00:47:52,603 [omego.extern] INFO Executing : omero version
00:47:54 OMERO.py version:
00:47:54 OMERO.server version:
00:47:54 5.6.3-586-a3f77d45b1-ice36-b38
00:47:54 5.22.0.dev0
00:47:54 2026-01-30 00:47:54,592 [omego.extern] INFO Completed [1.989 s]
00:47:54 2026-01-30 00:47:54,592 [omego.extern] DEBUG Using omero CLI from omero
00:47:54 2026-01-30 00:47:54,592 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:54 2026-01-30 00:47:54,593 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:54 2026-01-30 00:47:54,593 [omego.extern] INFO Executing : omero config get --show-password
00:47:56 2026-01-30 00:47:56,479 [omego.extern] INFO Completed [1.887 s]
00:47:56 2026-01-30 00:47:56,480 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:56 2026-01-30 00:47:56,480 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:56 2026-01-30 00:47:56,485 [omego.extern] INFO Completed [0.006 s]
00:47:56 2026-01-30 00:47:56,485 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:47:56 2026-01-30 00:47:56,485 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:47:56
00:47:56 2026-01-30 00:47:56,485 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:56 2026-01-30 00:47:56,486 [omego.extern] INFO Executing : omero config get --show-password
00:47:58 2026-01-30 00:47:58,325 [omego.extern] INFO Completed [1.839 s]
00:47:58 2026-01-30 00:47:58,325 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:58 2026-01-30 00:47:58,325 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:58 2026-01-30 00:47:58,334 [omego.extern] INFO Completed [0.009 s]
00:47:58 2026-01-30 00:47:58,334 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.3") at port "5432".\n'
00:47:58 2026-01-30 00:47:58,334 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:58 2026-01-30 00:47:58,334 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:58 2026-01-30 00:47:58,334 [omego.extern] INFO Executing : omero config get --show-password
00:48:00 2026-01-30 00:48:00,195 [omego.extern] INFO Completed [1.861 s]
00:48:00 2026-01-30 00:48:00,195 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:00 2026-01-30 00:48:00,195 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:00 2026-01-30 00:48:00,205 [omego.extern] INFO Completed [0.010 s]
00:48:00 2026-01-30 00:48:00,205 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:48:00 2026-01-30 00:48:00,205 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:48:00 2026-01-30 00:48:00,207 [ omego.db] INFO Database is already at OMERO5.4__0
00:48:00 + export LANG=en_US.UTF-8
00:48:00 + LANG=en_US.UTF-8
00:48:00 + export LANGUAGE=en_US:en
00:48:00 + LANGUAGE=en_US:en
00:48:00 + export LC_ALL=en_US.UTF-8
00:48:00 + LC_ALL=en_US.UTF-8
00:48:00 + BUILD_ID=DONT_KILL_ME
00:48:00 + omero admin start
00:48:05 No descriptor given. Using etc/grid/default.xml
00:48:12 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:48:12 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:48:12 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:48:12 Waiting on startup. Use CTRL-C to exit
00:48:13 + omero admin waitup
00:48:14 Waiting on startup. Use CTRL-C to exit
00:48:15 + omero admin diagnostics
00:48:16
00:48:16 ================================================================================
00:48:16 OMERO Diagnostics (admin)
00:48:16 ================================================================================
00:48:16
00:48:16 Commands: java -version 17.0.17 (/usr/bin/java)
00:48:16 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:48:16 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:48:16 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:48:16 Commands: psql --version 16.11 (/usr/bin/psql)
00:48:16 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:48:16
00:48:16 Component: OMERO.py 5.22.0.dev0
00:48:16 Component: OMERO.server 5.6.3-586-a3f77d45b1-ice36-b38
00:48:16
00:48:16 Server: icegridnode running
00:48:16 Server: Blitz-0 active (pid = 32110, enabled)
00:48:16 Server: Indexer-0 activating (enabled)
00:48:16 Server: OMERO.Glacier2 active (pid = 32144, enabled)
00:48:16 Server: OMERO.IceStorm active (pid = 32172, enabled)
00:48:17 Server: Processor-0 active (pid = 32161, enabled)
00:48:17 Server: Tables-0 active (pid = 32174, enabled)
00:48:17
00:48:17 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:48:17 Log files: Blitz-0.log 33.6 KB errors=0 warnings=1
00:48:17 Log files: DropBox.log n/a
00:48:17 Log files: FileServer.log n/a
00:48:17 Log files: Indexer-0.log 358 B
00:48:17 Log files: MonitorServer.log n/a
00:48:17 Log files: Processor-0.log 735 B
00:48:17 Log files: Tables-0.log 961 B
00:48:17 Log files: TestDropBox.log n/a
00:48:17 Log files: master.err empty
00:48:17 Log files: master.out 30.5 KB
00:48:17 Log files: Total size 0.07 MB
00:48:17
00:48:17
00:48:17 Environment:OMERO_HOME=(unset)
00:48:17 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:48:17 Environment:OMERO_NODE=(unset)
00:48:17 Environment:OMERO_MASTER=(unset)
00:48:17 Environment:OMERO_USERDIR=(unset)
00:48:17 Environment:OMERO_TMPDIR=(unset)
00:48:17 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:17 Environment:PYTHONPATH=(unset)
00:48:17 Environment:ICE_HOME=/opt/ice-3.6.5
00:48:17 Environment:LD_LIBRARY_PATH=(unset)
00:48:17 Environment:DYLD_LIBRARY_PATH=(unset)
00:48:17
00:48:17 OMERO SSL port:4064
00:48:17 OMERO TCP port:4063
00:48:17 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:48:17 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:48:17
00:48:17 JVM settings: Blitz-${index} -Xmx7200m
00:48:17 JVM settings: Indexer-${index} -Xmx4800m
00:48:17 JVM settings: PixelData-${index} -Xmx7200m
00:48:17 JVM settings: Repository-${index} -Xmx4800m
00:48:17
00:48:17 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 30 January 2026 2cbc9e730f0f6c873a292c4cb08c911114eab91e
00:48:17 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 30 January 2026 2cbc9e730f0f6c873a292c4cb08c911114eab91e
00:48:17 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 30 January 2026 2cbc9e730f0f6c873a292c4cb08c911114eab91e
00:48:17 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 30 January 2026 98759e0de98f08e52c6d82b46bd4d53fdcd3c34c
00:48:17 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 30 January 2026 98759e0de98f08e52c6d82b46bd4d53fdcd3c34c
00:48:17 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 30 January 2026 98759e0de98f08e52c6d82b46bd4d53fdcd3c34c
00:48:17 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 30 January 2026 98759e0de98f08e52c6d82b46bd4d53fdcd3c34c
00:48:17 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 30 January 2026 98759e0de98f08e52c6d82b46bd4d53fdcd3c34c
00:48:17 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 30 January 2026 98759e0de98f08e52c6d82b46bd4d53fdcd3c34c
00:48:17 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:48:17 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:48:17 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
00:48:17 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:48:17 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:48:17 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:48:17 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:48:17 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 2e7aac810f85435371c0c39f76de0d3ea7c6a264
00:48:17 + deactivate
00:48:17 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:48:17 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:17 + export PATH
00:48:17 + unset _OLD_VIRTUAL_PATH
00:48:17 + '[' -n '' ']'
00:48:17 + hash -r
00:48:17 + '[' -n '' ']'
00:48:17 + unset VIRTUAL_ENV
00:48:17 + unset VIRTUAL_ENV_PROMPT
00:48:17 + '[' '!' '' = nondestructive ']'
00:48:17 + unset -f deactivate
00:48:17 Finished: SUCCESS
