00:45:47 Started by upstream project "Trigger" build number 62
00:45:47 originally caused by:
00:45:47 Started by timer
00:45:47 Running as SYSTEM
00:45:47 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:47 [OMERO-server] $ /bin/bash -xe /tmp/jenkins370405199446971203.sh
00:45:47 + source /home/settings.env
00:45:47 ++ OMERO_DB_HOST=pg
00:45:47 ++ OMERO_DB_USER=postgres
00:45:47 ++ OMERO_DB_PASS=
00:45:47 ++ OMERO_ROOT_PASS=omero
00:45:47 ++ OMERO_DATA_DIR=/OMERO
00:45:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:47 + OMERO_DB_NAME=OMERO-server
00:45:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:47 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:47 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:47 ++ deactivate nondestructive
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ hash -r
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ unset VIRTUAL_ENV
00:45:47 ++ unset VIRTUAL_ENV_PROMPT
00:45:47 ++ '[' '!' nondestructive = nondestructive ']'
00:45:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:47 ++ export VIRTUAL_ENV
00:45:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:47 ++ export PATH
00:45:47 ++ '[' -n '' ']'
00:45:47 ++ '[' -z '' ']'
00:45:47 ++ _OLD_VIRTUAL_PS1=
00:45:47 ++ PS1='(.venv3) '
00:45:47 ++ export PS1
00:45:47 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:47 ++ export VIRTUAL_ENV_PROMPT
00:45:47 ++ hash -r
00:45:47 + omero admin stop
00:45:48 Waiting on shutdown. Use CTRL-C to exit
00:45:48 .+ sleep 5
00:46:03 + deactivate
00:46:03 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:46:03 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:03 + export PATH
00:46:03 + unset _OLD_VIRTUAL_PATH
00:46:03 + '[' -n '' ']'
00:46:03 + hash -r
00:46:03 + '[' -n '' ']'
00:46:03 + unset VIRTUAL_ENV
00:46:03 + unset VIRTUAL_ENV_PROMPT
00:46:03 + '[' '!' '' = nondestructive ']'
00:46:03 + unset -f deactivate
00:46:03 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:46:04 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:46:08 + '[' false = true ']'
00:46:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:46:08 Skipping PURGE_DATA:CleanDbAndRepo
00:46:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:46:09 Copied 1 artifact from "OMERO-build" build number 39
00:46:10 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 35
00:46:10 Copied 2 artifacts from "OMERO-build-build" build number 39
00:46:10 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 32
00:46:10 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3151800362488423849.sh
00:46:10 + source /home/settings.env
00:46:10 ++ OMERO_DB_HOST=pg
00:46:10 ++ OMERO_DB_USER=postgres
00:46:10 ++ OMERO_DB_PASS=
00:46:10 ++ OMERO_ROOT_PASS=omero
00:46:10 ++ OMERO_DATA_DIR=/OMERO
00:46:10 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:10 + OMERO_DB_NAME=OMERO-server
00:46:10 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:10 + mkdir -p /home/omero/omero-server-data
00:46:10 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:10 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:10 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:10 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:10 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:10 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:10 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:10 ++ ls OMERO.server-5.6.3-588-5591bc93b6-ice36-b39.zip
00:46:10 + ZIP=OMERO.server-5.6.3-588-5591bc93b6-ice36-b39.zip
00:46:10 + '[' '!' -z '' ']'
00:46:10 + DIST=OMERO.server-5.6.3-588-5591bc93b6-ice36-b39
00:46:10 + unzip OMERO.server-5.6.3-588-5591bc93b6-ice36-b39.zip
00:46:10 Archive: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39.zip
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/blitz/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/grid/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/profiles/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/error/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/grid/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/luts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/luts/janelia/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/luts/matplotlib/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/luts/ncsa_paledit/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/luts/seaborn/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/luts/wcif/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/omero/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/omero/analysis_scripts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/omero/annotation_scripts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/omero/export_scripts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/omero/figure_scripts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/omero/import_scripts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/scripts/omero/util_scripts/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/server/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/share/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/share/licenses/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/misc/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__1/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__10/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__11/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__2/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__3/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__4/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__5/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__6/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__7/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__8/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3A__9/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3__4/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3__5/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3__6/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO3__7/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO4.1__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO4.2__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO4.2__0/t/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO4.3__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO4.4__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO4__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.0__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.1__1/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.2__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.3__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4DEV__1/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4DEV__2/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4DEV__3/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/var/
00:46:10 creating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/var/tmp/
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/LICENSE.txt
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/backup.cfg
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/blitz/mail-senders.example
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/blitz/mail-server.example
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/build.properties
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/env.bat
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/env.sh
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/hibernate.properties
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/ice.config
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/logback-cli.xml
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/logback-indexing-cli.xml
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/logback-indexing.xml
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/logback.xml
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/mime.types
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/node1.cfg
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/node2.cfg
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/omero.properties
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/profiles/psql
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/rollover.cfg
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/Windows.cfg
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/error/maintainance.html
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/grid/README
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/grid/default.xml
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/grid/templates.xml
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/grid/windefault.xml
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/ice.config
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/internal.cfg
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/master.cfg
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/templates/robot.template
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/etc/testdropbox.config
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/history.rst
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/OMEZarrReader.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/accessors-smart.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/activation.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/aggdesigner-algorithm.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/aircompressor.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/antlr.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/aopalliance.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/apiguardian-api.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/asm.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/avatica-core.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/avatica-metrics.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/aws-java-sdk-core.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/aws-java-sdk-kms.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/aws-java-sdk-s3.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/base.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-anim.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-awt-util.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-bridge.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-codec.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-constants.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-css.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-dom.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-ext.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-gvt.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-i18n.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-parser.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-script.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-shared-resources.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-svg-dom.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-svggen.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-transcoder.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-util.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/batik-xml.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/btm.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/calcite-core.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/calcite-linq4j.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/cdm-core.jar
00:46:10 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/lib/client/checker-qual.jar
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00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/psql-footer.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/psql-header.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/schema.sql
00:46:12 inflating: OMERO.server-5.6.3-588-5591bc93b6-ice36-b39/sql/psql/OMERO5.4__0/views.sql
00:46:12 + rm -f OMERO.server-5.6.3-588-5591bc93b6-ice36-b39.zip
00:46:12 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-588-5591bc93b6-ice36-b39 /home/omero/workspace/OMERO-server/OMERO.server
00:46:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:12 --2026-01-31 00:46:12-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:12 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:12 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:12 HTTP request sent, awaiting response... 200 OK
00:46:12 Length: 889211 (868K) [application/java-archive]
00:46:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:46:12
00:46:12 0K .......... .......... .......... .......... .......... 5% 31.9M 0s
00:46:12 50K .......... .......... .......... .......... .......... 11% 3.56M 0s
00:46:12 100K .......... .......... .......... .......... .......... 17% 73.0M 0s
00:46:12 150K .......... .......... .......... .......... .......... 23% 3.78M 0s
00:46:12 200K .......... .......... .......... .......... .......... 28% 231M 0s
00:46:12 250K .......... .......... .......... .......... .......... 34% 42.2M 0s
00:46:12 300K .......... .......... .......... .......... .......... 40% 300M 0s
00:46:12 350K .......... .......... .......... .......... .......... 46% 4.50M 0s
00:46:12 400K .......... .......... .......... .......... .......... 51% 32.1M 0s
00:46:12 450K .......... .......... .......... .......... .......... 57% 160M 0s
00:46:12 500K .......... .......... .......... .......... .......... 63% 39.5M 0s
00:46:12 550K .......... .......... .......... .......... .......... 69% 85.9M 0s
00:46:12 600K .......... .......... .......... .......... .......... 74% 306M 0s
00:46:12 650K .......... .......... .......... .......... .......... 80% 4.16M 0s
00:46:12 700K .......... .......... .......... .......... .......... 86% 41.1M 0s
00:46:12 750K .......... .......... .......... .......... .......... 92% 288M 0s
00:46:12 800K .......... .......... .......... .......... .......... 97% 78.1M 0s
00:46:12 850K .......... ........ 100% 268M=0.06s
00:46:12
00:46:12 2026-01-31 00:46:12 (14.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:46:12
00:46:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:46:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:12 --2026-01-31 00:46:12-- https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:46:12 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:12 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:12 HTTP request sent, awaiting response... 200 OK
00:46:12 Length: 73309 (72K) [application/java-archive]
00:46:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
00:46:12
00:46:12 0K .......... .......... .......... .......... .......... 69% 35.4M 0s
00:46:12 50K .......... .......... . 100% 1.69M=0.01s
00:46:12
00:46:12 2026-01-31 00:46:12 (5.04 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
00:46:12
00:46:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:46:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:13 --2026-01-31 00:46:13-- https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:46:13 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:13 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:13 HTTP request sent, awaiting response... 200 OK
00:46:13 Length: 63303 (62K) [application/java-archive]
00:46:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
00:46:13
00:46:13 0K .......... .......... .......... .......... .......... 80% 3.51M 0s
00:46:13 50K .......... . 100% 11.5M=0.01s
00:46:13
00:46:13 2026-01-31 00:46:13 (4.05 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
00:46:13
00:46:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:46:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:13 --2026-01-31 00:46:13-- https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:46:13 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:13 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:46:13 HTTP request sent, awaiting response... 200 OK
00:46:13 Length: 1271272 (1.2M) [application/java-archive]
00:46:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
00:46:13
00:46:13 0K .......... .......... .......... .......... .......... 4% 33.6M 0s
00:46:13 50K .......... .......... .......... .......... .......... 8% 3.58M 0s
00:46:13 100K .......... .......... .......... .......... .......... 12% 3.99M 0s
00:46:13 150K .......... .......... .......... .......... .......... 16% 35.6M 0s
00:46:13 200K .......... .......... .......... .......... .......... 20% 69.2M 0s
00:46:13 250K .......... .......... .......... .......... .......... 24% 158M 0s
00:46:13 300K .......... .......... .......... .......... .......... 28% 56.9M 0s
00:46:13 350K .......... .......... .......... .......... .......... 32% 4.72M 0s
00:46:13 400K .......... .......... .......... .......... .......... 36% 30.7M 0s
00:46:13 450K .......... .......... .......... .......... .......... 40% 70.1M 0s
00:46:13 500K .......... .......... .......... .......... .......... 44% 102M 0s
00:46:13 550K .......... .......... .......... .......... .......... 48% 94.9M 0s
00:46:13 600K .......... .......... .......... .......... .......... 52% 4.71M 0s
00:46:13 650K .......... .......... .......... .......... .......... 56% 21.0M 0s
00:46:13 700K .......... .......... .......... .......... .......... 60% 240M 0s
00:46:13 750K .......... .......... .......... .......... .......... 64% 71.6M 0s
00:46:13 800K .......... .......... .......... .......... .......... 68% 57.1M 0s
00:46:13 850K .......... .......... .......... .......... .......... 72% 5.16M 0s
00:46:13 900K .......... .......... .......... .......... .......... 76% 21.9M 0s
00:46:13 950K .......... .......... .......... .......... .......... 80% 53.4M 0s
00:46:13 1000K .......... .......... .......... .......... .......... 84% 352M 0s
00:46:13 1050K .......... .......... .......... .......... .......... 88% 51.9M 0s
00:46:13 1100K .......... .......... .......... .......... .......... 92% 5.23M 0s
00:46:13 1150K .......... .......... .......... .......... .......... 96% 14.9M 0s
00:46:13 1200K .......... .......... .......... .......... . 100% 248M=0.09s
00:46:13
00:46:13 2026-01-31 00:46:13 (14.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
00:46:13
00:46:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
00:46:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:13 --2026-01-31 00:46:13-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
00:46:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:13 HTTP request sent, awaiting response... 200 OK
00:46:13 Length: 1036468 (1012K) [application/java-archive]
00:46:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’
00:46:13
00:46:13 0K .......... .......... .......... .......... .......... 4% 33.6M 0s
00:46:13 50K .......... .......... .......... .......... .......... 9% 3.56M 0s
00:46:13 100K .......... .......... .......... .......... .......... 14% 4.00M 0s
00:46:13 150K .......... .......... .......... .......... .......... 19% 35.2M 0s
00:46:13 200K .......... .......... .......... .......... .......... 24% 27.9M 0s
00:46:13 250K .......... .......... .......... .......... .......... 29% 24.8M 0s
00:46:13 300K .......... .......... .......... .......... .......... 34% 5.76M 0s
00:46:14 350K .......... .......... .......... .......... .......... 39% 27.2M 0s
00:46:14 400K .......... .......... .......... .......... .......... 44% 27.1M 0s
00:46:14 450K .......... .......... .......... .......... .......... 49% 48.1M 0s
00:46:14 500K .......... .......... .......... .......... .......... 54% 26.0M 0s
00:46:14 550K .......... .......... .......... .......... .......... 59% 6.13M 0s
00:46:14 600K .......... .......... .......... .......... .......... 64% 45.2M 0s
00:46:14 650K .......... .......... .......... .......... .......... 69% 27.2M 0s
00:46:14 700K .......... .......... .......... .......... .......... 74% 40.7M 0s
00:46:14 750K .......... .......... .......... .......... .......... 79% 17.7M 0s
00:46:14 800K .......... .......... .......... .......... .......... 83% 7.24M 0s
00:46:14 850K .......... .......... .......... .......... .......... 88% 33.3M 0s
00:46:14 900K .......... .......... .......... .......... .......... 93% 21.1M 0s
00:46:14 950K .......... .......... .......... .......... .......... 98% 113M 0s
00:46:14 1000K .......... .. 100% 257M=0.07s
00:46:14
00:46:14 2026-01-31 00:46:14 (13.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’ saved [1036468/1036468]
00:46:14
00:46:14 + for x in *.jar
00:46:14 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:46:14 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:14 ++ deactivate nondestructive
00:46:14 ++ '[' -n '' ']'
00:46:14 ++ '[' -n '' ']'
00:46:14 ++ hash -r
00:46:14 ++ '[' -n '' ']'
00:46:14 ++ unset VIRTUAL_ENV
00:46:14 ++ unset VIRTUAL_ENV_PROMPT
00:46:14 ++ '[' '!' nondestructive = nondestructive ']'
00:46:14 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:14 ++ export VIRTUAL_ENV
00:46:14 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:14 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:14 ++ export PATH
00:46:14 ++ '[' -n '' ']'
00:46:14 ++ '[' -z '' ']'
00:46:14 ++ _OLD_VIRTUAL_PS1=
00:46:14 ++ PS1='(.venv3) '
00:46:14 ++ export PS1
00:46:14 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:14 ++ export VIRTUAL_ENV_PROMPT
00:46:14 ++ hash -r
00:46:14 + pip install -U pip
00:46:14 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:46:14 Collecting pip
00:46:14 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
00:46:14 Installing collected packages: pip
00:46:14 Attempting uninstall: pip
00:46:14 Found existing installation: pip 22.3.1
00:46:14 Uninstalling pip-22.3.1:
00:46:14 Successfully uninstalled pip-22.3.1
00:46:15 Successfully installed pip-25.3
00:46:15 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:46:15 Collecting zeroc-ice==3.6.5
00:46:16 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:46:19 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.5 MB/s 0:00:02
00:46:19 Installing collected packages: zeroc-ice
00:46:19 Successfully installed zeroc-ice-3.6.5
00:46:20 + pip install markdown
00:46:20 Collecting markdown
00:46:20 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
00:46:20 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
00:46:20 Installing collected packages: markdown
00:46:20 Successfully installed markdown-3.10.1
00:46:20 + pip install reportlab
00:46:20 Collecting reportlab
00:46:20 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
00:46:21 Collecting pillow>=9.0.0 (from reportlab)
00:46:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:46:21 Collecting charset-normalizer (from reportlab)
00:46:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:46:21 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
00:46:21 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:46:21 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:46:21 Installing collected packages: pillow, charset-normalizer, reportlab
00:46:22
00:46:22 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
00:46:22 + pip install omego
00:46:22 Collecting omego
00:46:22 Using cached omego-0.7.0-py3-none-any.whl
00:46:22 Collecting future (from omego)
00:46:22 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:46:22 Collecting yaclifw>=0.1.1 (from omego)
00:46:22 Using cached yaclifw-0.2.0-py3-none-any.whl
00:46:22 Collecting six (from yaclifw>=0.1.1->omego)
00:46:22 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:46:22 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:46:22 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:46:22 Installing collected packages: six, future, yaclifw, omego
00:46:23
00:46:23 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:46:23 + pip install tables
00:46:23 Collecting tables
00:46:23 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:46:23 Collecting numpy>=1.20.0 (from tables)
00:46:23 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:46:23 Collecting numexpr>=2.6.2 (from tables)
00:46:23 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:46:23 Collecting packaging (from tables)
00:46:23 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:46:24 Collecting py-cpuinfo (from tables)
00:46:24 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:46:24 Collecting blosc2>=2.3.0 (from tables)
00:46:24 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:46:24 Collecting typing-extensions>=4.4.0 (from tables)
00:46:24 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:46:24 Collecting ndindex (from blosc2>=2.3.0->tables)
00:46:24 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:46:24 Collecting msgpack (from blosc2>=2.3.0->tables)
00:46:24 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:26 Collecting requests (from blosc2>=2.3.0->tables)
00:46:26 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:46:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:46:26 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:46:26 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:46:26 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:46:26 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:46:26 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:46:26 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:46:26 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:46:26 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:46:26 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:46:26 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
00:46:26 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:46:26 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:46:26 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:46:26 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:46:26 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:46:26 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:46:26 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:46:26 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:46:26 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:46:26 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:46:30
00:46:30 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:46:30 + pip install jinja2
00:46:30 Collecting jinja2
00:46:30 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:46:30 Collecting MarkupSafe>=2.0 (from jinja2)
00:46:30 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:46:30 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:46:30 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:46:30 Installing collected packages: MarkupSafe, jinja2
00:46:30
00:46:30 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:46:30 + pip install omero-py
00:46:31 Collecting omero-py
00:46:31 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:46:31 Collecting appdirs (from omero-py)
00:46:31 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:46:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:46:31 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1)
00:46:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:46:31 Collecting PyYAML (from omero-py)
00:46:31 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:46:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:46:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:46:31 Collecting portalocker (from omero-py)
00:46:31 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:46:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:46:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:46:31 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:46:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:46:31 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:46:31 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:46:31 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:46:31 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:46:31 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:46:33
00:46:33 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:46:33 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:46:33 Collecting omero-metadata
00:46:33 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-u7jqa6hf/omero-metadata_ceeb05615c4d478d958457ddde7dd729
00:46:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-u7jqa6hf/omero-metadata_ceeb05615c4d478d958457ddde7dd729
00:46:34 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 0dd8cfa5ff10d342623fe8ef03e04c2a8691ed1f
00:46:34 Installing build dependencies: started
00:46:35 Installing build dependencies: finished with status 'done'
00:46:35 Getting requirements to build wheel: started
00:46:35 Getting requirements to build wheel: finished with status 'done'
00:46:35 Preparing metadata (pyproject.toml): started
00:46:35 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:35 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:46:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:46:35 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:46:35 Collecting pandas (from omero-metadata)
00:46:35 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:46:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:36 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.1)
00:46:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:46:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:46:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:46:36 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:46:36 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:36 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:36 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:46:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:46:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:46:36 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:46:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:46:36 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:46:36 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:36 Building wheels for collected packages: omero-metadata
00:46:36 Building wheel for omero-metadata (pyproject.toml): started
00:46:36 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:36 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=674cdb79425d8a120ffa2efde3a48bfea6a6c0430fccb61f19705660d09671db
00:46:36 Stored in directory: /tmp/pip-ephem-wheel-cache-ia1egt9l/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:46:36 Successfully built omero-metadata
00:46:36 Installing collected packages: python-dateutil, pandas, omero-metadata
00:46:40
00:46:40 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:46:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:41 Collecting omero-cli-render
00:46:41 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-57ml535a/omero-cli-render_31850dfd055444cb8e0260a1a546057d
00:46:41 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-57ml535a/omero-cli-render_31850dfd055444cb8e0260a1a546057d
00:46:44 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:44 Switched to a new branch 'merge_ci'
00:46:44 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:44 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit eb3e1d0a6e5588e49de3b35c16c40342655f44c1
00:46:44 Installing build dependencies: started
00:46:45 Installing build dependencies: finished with status 'done'
00:46:45 Getting requirements to build wheel: started
00:46:45 Getting requirements to build wheel: finished with status 'done'
00:46:45 Preparing metadata (pyproject.toml): started
00:46:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:46:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:45 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.1)
00:46:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:46:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:45 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:46:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:46:45 Building wheels for collected packages: omero-cli-render
00:46:45 Building wheel for omero-cli-render (pyproject.toml): started
00:46:45 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:45 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=3e87571164ff3158446cb7ee1c1b618d40b6abd749e9da32740d388418843c55
00:46:45 Stored in directory: /tmp/pip-ephem-wheel-cache-8ach8ifd/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:45 Successfully built omero-cli-render
00:46:46 Installing collected packages: omero-cli-render
00:46:46 Successfully installed omero-cli-render-0.8.2.dev0
00:46:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:46 Collecting omero-cli-duplicate
00:46:46 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-cbu4obap/omero-cli-duplicate_3a602e3874f945f3aeca16eb3ef23078
00:46:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-cbu4obap/omero-cli-duplicate_3a602e3874f945f3aeca16eb3ef23078
00:46:47 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:47 Switched to a new branch 'merge_ci'
00:46:47 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:47 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit ea2bd80cb88b40bc248d7274680e986701af040b
00:46:47 Installing build dependencies: started
00:46:48 Installing build dependencies: finished with status 'done'
00:46:48 Getting requirements to build wheel: started
00:46:48 Getting requirements to build wheel: finished with status 'done'
00:46:48 Preparing metadata (pyproject.toml): started
00:46:48 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:48 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:46:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:48 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1)
00:46:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:46:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:46:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:46:48 Building wheels for collected packages: omero-cli-duplicate
00:46:48 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:48 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:48 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=02fda49bc7a16b8ece0897e74bd81646157c876ea9f31cc9ad5b1d8571458ae1
00:46:48 Stored in directory: /tmp/pip-ephem-wheel-cache-mdfl__dj/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:48 Successfully built omero-cli-duplicate
00:46:48 Installing collected packages: omero-cli-duplicate
00:46:49 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:49 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:46:49 Collecting omero-cli-zarr
00:46:49 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-rk3mf3f9/omero-cli-zarr_c5a32fd9652948308e51beb021931e47
00:46:49 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-rk3mf3f9/omero-cli-zarr_c5a32fd9652948308e51beb021931e47
00:46:50 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:50 Switched to a new branch 'merge_ci'
00:46:50 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:50 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit a573ff3ccfb4d1e7bd735e544db390aacee501bc
00:46:50 Installing build dependencies: started
00:46:51 Installing build dependencies: finished with status 'done'
00:46:51 Getting requirements to build wheel: started
00:46:51 Getting requirements to build wheel: finished with status 'done'
00:46:51 Installing backend dependencies: started
00:46:52 Installing backend dependencies: finished with status 'done'
00:46:52 Preparing metadata (pyproject.toml): started
00:46:52 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:52 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
00:46:52 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:46:52 Using cached ome_zarr-0.12.2-py3-none-any.whl.metadata (2.9 kB)
00:46:52 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.1)
00:46:52 Collecting dask (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:52 Downloading dask-2026.1.2-py3-none-any.whl.metadata (3.8 kB)
00:46:53 Collecting zarr>=v3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:53 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:46:53 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:53 Using cached fsspec-2026.1.0-py3-none-any.whl.metadata (10 kB)
00:46:53 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:53 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
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00:46:53 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:53 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:46:53 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
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00:46:53 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
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00:46:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
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00:46:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
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00:46:54 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
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00:46:54 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
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00:46:54 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:46:54 Collecting donfig>=0.8 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:46:54 Collecting google-crc32c>=1.5 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:46:54 Collecting numcodecs>=0.14 (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:46:54 Requirement already satisfied: typing-extensions>=4.9 in ./.venv3/lib64/python3.11/site-packages (from zarr>=v3.0.0->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:46:54 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:46:54 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:46:54 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:46:54 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:46:54 Collecting multidict<7.0,>=4.5 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:54 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:46:55 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:46:55 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:46:55 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:46:55 Collecting click>=8.1 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:46:55 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:46:55 Collecting partd>=1.4.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:46:55 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:46:55 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:46:55 Collecting locket (from partd>=1.4.0->dask->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:46:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
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00:46:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:46:55 Collecting aiobotocore<4.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached aiobotocore-3.1.1-py3-none-any.whl.metadata (26 kB)
00:46:55 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:55 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:46:56 Collecting botocore<1.42.31,>=1.41.0 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached botocore-1.42.30-py3-none-any.whl.metadata (5.9 kB)
00:46:56 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:46:56 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:46:56 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:56 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (9.0 kB)
00:46:56 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:46:56 Using cached ome_zarr-0.12.2-py3-none-any.whl (41 kB)
00:46:56 Using cached fsspec-2026.1.0-py3-none-any.whl (201 kB)
00:46:56 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:46:56 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:46:56 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:46:56 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:46:56 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:46:56 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
00:46:56 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:46:56 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:46:56 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:46:56 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:46:56 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:46:56 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:46:56 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:46:56 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:46:56 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:46:56 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:46:56 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:46:56 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:46:56 Downloading dask-2026.1.2-py3-none-any.whl (1.5 MB)
00:46:56 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 19.4 MB/s 0:00:00
00:46:56 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:46:56 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:46:56 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:46:56 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:46:56 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:46:56 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:46:56 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:46:56 Using cached s3fs-2026.1.0-py3-none-any.whl (30 kB)
00:46:56 Using cached aiobotocore-3.1.1-py3-none-any.whl (87 kB)
00:46:56 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:46:56 Using cached botocore-1.42.30-py3-none-any.whl (14.6 MB)
00:46:56 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:46:56 Using cached wrapt-2.0.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
00:46:56 Building wheels for collected packages: omero-cli-zarr
00:46:56 Building wheel for omero-cli-zarr (pyproject.toml): started
00:46:57 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:46:57 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev139+ga573ff3-py3-none-any.whl size=37765 sha256=bbdebbc0f5af1bfc36c4aeecf7decac1606c9f5798da9c25fb26c5678a92ad12
00:46:57 Stored in directory: /tmp/pip-ephem-wheel-cache-8xfa8gd4/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:46:57 Successfully built omero-cli-zarr
00:46:57 Installing collected packages: zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:47:06
00:47:06 Successfully installed aiobotocore-3.1.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.30 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.2 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.1.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.12.2 omero-cli-zarr-0.5.5.dev139+ga573ff3 partd-1.4.2 propcache-0.4.1 s3fs-2026.1.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.0.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:47:06 + pip install omero-certificates
00:47:07 Collecting omero-certificates
00:47:07 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:47:07 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:47:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:47:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:47:07 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1)
00:47:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:47:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:47:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:47:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:47:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:47:07 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:47:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:47:07 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:47:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:47:07 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:47:07 Installing collected packages: omero-certificates
00:47:07 Successfully installed omero-certificates-0.4.0
00:47:07 + for x in *.tar.gz
00:47:07 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:47:07 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:47:07 Installing build dependencies: started
00:47:08 Installing build dependencies: finished with status 'done'
00:47:08 Getting requirements to build wheel: started
00:47:09 Getting requirements to build wheel: finished with status 'done'
00:47:09 Preparing metadata (pyproject.toml): started
00:47:09 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:09 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:47:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:47:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:47:09 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1)
00:47:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:47:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:47:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:47:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:47:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:47:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:47:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:47:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:47:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:47:09 Building wheels for collected packages: omero-dropbox
00:47:09 Building wheel for omero-dropbox (pyproject.toml): started
00:47:09 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:47:09 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=802c03f9b4436e5c5bf8282ca5d4a2143d7d72f08e78a4ddfbcb2c120385fe1e
00:47:09 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:47:09 Successfully built omero-dropbox
00:47:09 Installing collected packages: omero-dropbox
00:47:09 Successfully installed omero-dropbox-5.7.1.dev0
00:47:09 + for x in *.tar.gz
00:47:09 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:47:10 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:47:10 Installing build dependencies: started
00:47:10 Installing build dependencies: finished with status 'done'
00:47:10 Getting requirements to build wheel: started
00:47:11 Getting requirements to build wheel: finished with status 'done'
00:47:11 Preparing metadata (pyproject.toml): started
00:47:11 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:11 Building wheels for collected packages: omero_marshal
00:47:11 Building wheel for omero_marshal (pyproject.toml): started
00:47:11 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:47:11 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=baa976a8c739fc5d7c101b6fa1eda5bfdb33dfc4753105d1778e07a192b55012
00:47:11 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:47:11 Successfully built omero_marshal
00:47:12 Installing collected packages: omero_marshal
00:47:12 Successfully installed omero_marshal-0.9.2.dev0
00:47:12 + for x in *.tar.gz
00:47:12 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:47:12 Processing ./omero_py-5.22.0.dev0.tar.gz
00:47:12 Installing build dependencies: started
00:47:13 Installing build dependencies: finished with status 'done'
00:47:13 Getting requirements to build wheel: started
00:47:14 Getting requirements to build wheel: finished with status 'done'
00:47:14 Preparing metadata (pyproject.toml): started
00:47:14 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:47:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:47:14 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1)
00:47:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:47:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:47:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:47:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:47:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:47:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:47:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:47:14 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
00:47:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:47:14 Building wheels for collected packages: omero-py
00:47:14 Building wheel for omero-py (pyproject.toml): started
00:47:15 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:47:15 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786522 sha256=8a22192cdca4c225e81d3c92fcae6671fdf9ed4929e5e5dc7ff28cc7f7466227
00:47:15 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:47:15 Successfully built omero-py
00:47:15 Installing collected packages: omero-py
00:47:15 Attempting uninstall: omero-py
00:47:15 Found existing installation: omero-py 5.21.3
00:47:15 Uninstalling omero-py-5.21.3:
00:47:15 Successfully uninstalled omero-py-5.21.3
00:47:17 Successfully installed omero-py-5.22.0.dev0
00:47:17 + for x in *.tar.gz
00:47:17 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:47:18 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:47:18 Installing build dependencies: started
00:47:18 Installing build dependencies: finished with status 'done'
00:47:18 Getting requirements to build wheel: started
00:47:19 Getting requirements to build wheel: finished with status 'done'
00:47:19 Preparing metadata (pyproject.toml): started
00:47:19 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:19 Building wheels for collected packages: omero-scripts
00:47:19 Building wheel for omero-scripts (pyproject.toml): started
00:47:19 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:47:19 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=6e16a0a67a97b74d6415688a2af644df9d50d3575b2ac5797752a6d7afce9fc9
00:47:19 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:47:19 Successfully built omero-scripts
00:47:19 Installing collected packages: omero-scripts
00:47:19 Successfully installed omero-scripts-5.10.1.dev0
00:47:20 + for x in *.tar.gz
00:47:20 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:47:20 Processing ./omero_web-5.30.2.dev0.tar.gz
00:47:20 Installing build dependencies: started
00:47:21 Installing build dependencies: finished with status 'done'
00:47:21 Getting requirements to build wheel: started
00:47:21 Getting requirements to build wheel: finished with status 'done'
00:47:21 Preparing metadata (pyproject.toml): started
00:47:22 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:22 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
00:47:22 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:47:22 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:47:22 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:47:22 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
00:47:22 Collecting django-pipeline (from omero-web==5.30.2.dev0)
00:47:22 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:47:22 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:47:22 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:47:22 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:47:22 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:47:22 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:47:22 Using cached gunicorn-24.1.1-py3-none-any.whl.metadata (4.6 kB)
00:47:22 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:47:22 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:47:22 Collecting pytz (from omero-web==5.30.2.dev0)
00:47:22 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:47:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:47:22 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:47:22 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:47:22 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:47:22 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:47:22 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:47:22 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:47:22 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:47:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:47:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:47:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1)
00:47:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:47:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:47:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:47:22 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
00:47:22 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
00:47:22 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:47:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:47:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:47:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:47:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:47:22 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:47:22 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
00:47:22 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:47:22 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:47:22 Using cached gunicorn-24.1.1-py3-none-any.whl (114 kB)
00:47:22 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:47:22 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:47:22 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:47:22 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:47:22 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:47:22 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:47:22 Building wheels for collected packages: omero-web
00:47:22 Building wheel for omero-web (pyproject.toml): started
00:47:24 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:47:24 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819262 sha256=b853e505aa172815309989a2d9737a4aa23960f93a2703aeaeeee265254f782c
00:47:24 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:47:24 Successfully built omero-web
00:47:24 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:47:27
00:47:27 Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-24.1.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:47:27 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:27 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:27 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:27 --2026-01-31 00:47:27-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:27 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.111.133, ...
00:47:27 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:47:28 HTTP request sent, awaiting response... 200 OK
00:47:28 Length: 137533 (134K) [text/plain]
00:47:28 Saving to: ‘Figure_To_Pdf.py’
00:47:28
00:47:28 0K .......... .......... .......... .......... .......... 37% 4.02M 0s
00:47:28 50K .......... .......... .......... .......... .......... 74% 5.57M 0s
00:47:28 100K .......... .......... .......... .... 100% 27.4M=0.02s
00:47:28
00:47:28 2026-01-31 00:47:28 (5.93 MB/s) - ‘Figure_To_Pdf.py’ saved [137533/137533]
00:47:28
00:47:28 + chmod 755 Figure_To_Pdf.py
00:47:28 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:47:28 + omero config set omero.db.name OMERO-server
00:47:30 + omero config set omero.db.host pg
00:47:31 + omero config set omero.db.user postgres
00:47:33 + omero config set omero.data.dir /home/omero/omero-server-data
00:47:35 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:47:37 + omero config set omero.db.poolsize 25
00:47:39 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:47:41 + omero config set omero.security.trustStorePassword changeit
00:47:43 + omero config set omero.mail.config true
00:47:45 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:47:46 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:47:48 + omero certificates
00:47:50 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:47:50 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:47:50 + '[' false = true ']'
00:47:50 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:47:50 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:47:50 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:47:50 2026-01-31 00:47:50,894 [ omego.db] DEBUG dbcommand => upgrade
00:47:50 2026-01-31 00:47:50,894 [ omego.db] DEBUG dbhost => localhost
00:47:50 2026-01-31 00:47:50,894 [ omego.db] DEBUG dbname => OMERO-server
00:47:50 2026-01-31 00:47:50,894 [ omego.db] DEBUG dbpass => omero
00:47:50 2026-01-31 00:47:50,894 [ omego.db] DEBUG dbuser => omero
00:47:50 2026-01-31 00:47:50,894 [ omego.db] DEBUG rootpass => omero
00:47:50 2026-01-31 00:47:50,895 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:47:50 2026-01-31 00:47:50,895 [omego.extern] INFO Executing : omero version
00:47:52 OMERO.py version:
00:47:52 OMERO.server version:
00:47:52 5.6.3-588-5591bc93b6-ice36-b39
00:47:52 5.22.0.dev0
00:47:52 2026-01-31 00:47:52,818 [omego.extern] INFO Completed [1.924 s]
00:47:52 2026-01-31 00:47:52,819 [omego.extern] DEBUG Using omero CLI from omero
00:47:52 2026-01-31 00:47:52,819 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:52 2026-01-31 00:47:52,819 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:52 2026-01-31 00:47:52,819 [omego.extern] INFO Executing : omero config get --show-password
00:47:54 2026-01-31 00:47:54,635 [omego.extern] INFO Completed [1.816 s]
00:47:54 2026-01-31 00:47:54,635 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:54 2026-01-31 00:47:54,635 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:54 2026-01-31 00:47:54,641 [omego.extern] INFO Completed [0.006 s]
00:47:54 2026-01-31 00:47:54,641 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:47:54 2026-01-31 00:47:54,641 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:47:54
00:47:54 2026-01-31 00:47:54,641 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:54 2026-01-31 00:47:54,641 [omego.extern] INFO Executing : omero config get --show-password
00:47:56 2026-01-31 00:47:56,456 [omego.extern] INFO Completed [1.815 s]
00:47:56 2026-01-31 00:47:56,456 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:56 2026-01-31 00:47:56,456 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:56 2026-01-31 00:47:56,465 [omego.extern] INFO Completed [0.009 s]
00:47:56 2026-01-31 00:47:56,465 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.3") at port "5432".\n'
00:47:56 2026-01-31 00:47:56,465 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:56 2026-01-31 00:47:56,465 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:56 2026-01-31 00:47:56,465 [omego.extern] INFO Executing : omero config get --show-password
00:47:58 2026-01-31 00:47:58,351 [omego.extern] INFO Completed [1.886 s]
00:47:58 2026-01-31 00:47:58,351 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:58 2026-01-31 00:47:58,351 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:58 2026-01-31 00:47:58,361 [omego.extern] INFO Completed [0.010 s]
00:47:58 2026-01-31 00:47:58,361 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:58 2026-01-31 00:47:58,362 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:58 2026-01-31 00:47:58,363 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:58 + export LANG=en_US.UTF-8
00:47:58 + LANG=en_US.UTF-8
00:47:58 + export LANGUAGE=en_US:en
00:47:58 + LANGUAGE=en_US:en
00:47:58 + export LC_ALL=en_US.UTF-8
00:47:58 + LC_ALL=en_US.UTF-8
00:47:58 + BUILD_ID=DONT_KILL_ME
00:47:58 + omero admin start
00:48:03 No descriptor given. Using etc/grid/default.xml
00:48:11 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:48:11 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:48:11 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:48:11 Waiting on startup. Use CTRL-C to exit
00:48:11 + omero admin waitup
00:48:13 Waiting on startup. Use CTRL-C to exit
00:48:13 + omero admin diagnostics
00:48:15
00:48:15 ================================================================================
00:48:15 OMERO Diagnostics (admin)
00:48:15 ================================================================================
00:48:15
00:48:15 Commands: java -version 17.0.17 (/usr/bin/java)
00:48:15 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:48:15 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:48:15 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:48:15 Commands: psql --version 16.11 (/usr/bin/psql)
00:48:15 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:48:15
00:48:15 Component: OMERO.py 5.22.0.dev0
00:48:15 Component: OMERO.server 5.6.3-588-5591bc93b6-ice36-b39
00:48:15
00:48:15 Server: icegridnode running
00:48:15 Server: Blitz-0 active (pid = 48589, enabled)
00:48:15 Server: Indexer-0 activating (enabled)
00:48:15 Server: OMERO.Glacier2 active (pid = 48659, enabled)
00:48:15 Server: OMERO.IceStorm active (pid = 48639, enabled)
00:48:15 Server: Processor-0 active (pid = 48622, enabled)
00:48:15 Server: Tables-0 active (pid = 48644, enabled)
00:48:15
00:48:15 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:48:15 Log files: Blitz-0.log 33.6 KB errors=0 warnings=1
00:48:15 Log files: DropBox.log n/a
00:48:15 Log files: FileServer.log n/a
00:48:15 Log files: Indexer-0.log 358 B
00:48:15 Log files: MonitorServer.log n/a
00:48:15 Log files: Processor-0.log 735 B
00:48:15 Log files: Tables-0.log 961 B
00:48:15 Log files: TestDropBox.log n/a
00:48:15 Log files: master.err empty
00:48:15 Log files: master.out 30.5 KB
00:48:15 Log files: Total size 0.07 MB
00:48:15
00:48:15
00:48:15 Environment:OMERO_HOME=(unset)
00:48:15 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:48:15 Environment:OMERO_NODE=(unset)
00:48:15 Environment:OMERO_MASTER=(unset)
00:48:15 Environment:OMERO_USERDIR=(unset)
00:48:15 Environment:OMERO_TMPDIR=(unset)
00:48:15 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:15 Environment:PYTHONPATH=(unset)
00:48:15 Environment:ICE_HOME=/opt/ice-3.6.5
00:48:15 Environment:LD_LIBRARY_PATH=(unset)
00:48:15 Environment:DYLD_LIBRARY_PATH=(unset)
00:48:15
00:48:15 OMERO SSL port:4064
00:48:15 OMERO TCP port:4063
00:48:15 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:48:15 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:48:15
00:48:15 JVM settings: Blitz-${index} -Xmx7200m
00:48:15 JVM settings: Indexer-${index} -Xmx4800m
00:48:15 JVM settings: PixelData-${index} -Xmx7200m
00:48:15 JVM settings: Repository-${index} -Xmx4800m
00:48:15
00:48:15 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 31 January 2026 7c762ad1edc013532bfeea7691fca98c13824f61
00:48:15 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 31 January 2026 7c762ad1edc013532bfeea7691fca98c13824f61
00:48:15 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 31 January 2026 7c762ad1edc013532bfeea7691fca98c13824f61
00:48:15 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 31 January 2026 06a0d86e94233061105755ab3a374a0677e57f72
00:48:15 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 31 January 2026 06a0d86e94233061105755ab3a374a0677e57f72
00:48:15 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 31 January 2026 06a0d86e94233061105755ab3a374a0677e57f72
00:48:15 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 31 January 2026 06a0d86e94233061105755ab3a374a0677e57f72
00:48:15 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 31 January 2026 06a0d86e94233061105755ab3a374a0677e57f72
00:48:15 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 31 January 2026 06a0d86e94233061105755ab3a374a0677e57f72
00:48:15 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:48:15 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:48:15 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
00:48:15 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:48:15 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:48:15 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:48:15 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:48:15 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 819b8c39aa04d051043f09bde308355954c75e84
00:48:16 + deactivate
00:48:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:48:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:16 + export PATH
00:48:16 + unset _OLD_VIRTUAL_PATH
00:48:16 + '[' -n '' ']'
00:48:16 + hash -r
00:48:16 + '[' -n '' ']'
00:48:16 + unset VIRTUAL_ENV
00:48:16 + unset VIRTUAL_ENV_PROMPT
00:48:16 + '[' '!' '' = nondestructive ']'
00:48:16 + unset -f deactivate
00:48:16 Finished: SUCCESS
