Skip to content

Console Output

09:27:05 Started by user devspace
09:27:05 Running as SYSTEM
09:27:05 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:27:05 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12318621561191595759.sh
09:27:05 + source /home/settings.env
09:27:05 ++ OMERO_DB_HOST=pg
09:27:05 ++ OMERO_DB_USER=postgres
09:27:05 ++ OMERO_DB_PASS=
09:27:05 ++ OMERO_ROOT_PASS=omero
09:27:05 ++ OMERO_DATA_DIR=/OMERO
09:27:05 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:27:05 + OMERO_DB_NAME=OMERO-server
09:27:05 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:27:05 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:27:05 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:27:05 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:27:05 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:27:05 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:27:05 ++ deactivate nondestructive
09:27:05 ++ '[' -n '' ']'
09:27:05 ++ '[' -n '' ']'
09:27:05 ++ '[' -n /bin/bash -o -n '' ']'
09:27:05 ++ hash -r
09:27:05 ++ '[' -n '' ']'
09:27:05 ++ unset VIRTUAL_ENV
09:27:05 ++ '[' '!' nondestructive = nondestructive ']'
09:27:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:27:05 ++ export VIRTUAL_ENV
09:27:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:27:05 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:27:05 ++ export PATH
09:27:05 ++ '[' -n '' ']'
09:27:05 ++ '[' -z '' ']'
09:27:05 ++ _OLD_VIRTUAL_PS1=
09:27:05 ++ PS1='(.venv3) '
09:27:05 ++ export PS1
09:27:05 ++ '[' -n /bin/bash -o -n '' ']'
09:27:05 ++ hash -r
09:27:05 + omero admin stop
09:27:22 Server not running
09:27:22 + echo not running
09:27:22 not running
09:27:22 + sleep 5
09:27:27 + deactivate
09:27:27 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:27:27 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:27:27 + export PATH
09:27:27 + unset _OLD_VIRTUAL_PATH
09:27:27 + '[' -n '' ']'
09:27:27 + '[' -n /bin/bash -o -n '' ']'
09:27:27 + hash -r
09:27:27 + '[' -n '' ']'
09:27:27 + unset VIRTUAL_ENV
09:27:27 + '[' '!' '' = nondestructive ']'
09:27:27 + unset -f deactivate
09:27:27 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:27:28 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
09:27:33 + '[' false = true ']'
09:27:33 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:27:33 Skipping PURGE_DATA:CleanDbAndRepo
09:27:33 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:27:35 Copied 1 artifact from "OMERO-build" build number 54
09:27:36 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 54
09:27:36 Copied 2 artifacts from "OMERO-build-build" build number 55
09:27:36 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1807841633879869480.sh
09:27:36 + source /home/settings.env
09:27:36 ++ OMERO_DB_HOST=pg
09:27:36 ++ OMERO_DB_USER=postgres
09:27:36 ++ OMERO_DB_PASS=
09:27:36 ++ OMERO_ROOT_PASS=omero
09:27:36 ++ OMERO_DATA_DIR=/OMERO
09:27:36 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:27:36 + OMERO_DB_NAME=OMERO-server
09:27:36 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:27:36 + mkdir -p /home/omero/omero-server-data
09:27:36 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:27:36 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:27:36 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:27:36 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:27:36 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:27:36 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:27:36 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:27:36 ++ ls OMERO.server-5.6.3-460-8485a3c827-ice36.zip
09:27:36 + ZIP=OMERO.server-5.6.3-460-8485a3c827-ice36.zip
09:27:36 + '[' '!' -z '' ']'
09:27:36 + DIST=OMERO.server-5.6.3-460-8485a3c827-ice36
09:27:36 + unzip OMERO.server-5.6.3-460-8485a3c827-ice36.zip
09:27:36 Archive:  OMERO.server-5.6.3-460-8485a3c827-ice36.zip
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/blitz/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/grid/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/profiles/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/error/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/grid/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/janelia/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/analysis_scripts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/annotation_scripts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/export_scripts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/figure_scripts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/import_scripts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/util_scripts/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/misc/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__1/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__10/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__11/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__2/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__3/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__4/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__5/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__6/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__7/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__8/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__9/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__4/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__5/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__6/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__7/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.1__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.2__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.2__0/t/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.3__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.4__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.0__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.1__1/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.2__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.3__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4DEV__1/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4DEV__2/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4DEV__3/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/
09:27:36    creating: OMERO.server-5.6.3-460-8485a3c827-ice36/var/
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/LICENSE.txt  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/backup.cfg  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/blitz/mail-senders.example  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/blitz/mail-server.example  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/build.properties  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/env.bat  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/env.sh  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/hibernate.properties  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/ice.config  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/logback-cli.xml  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/logback-indexing-cli.xml  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/logback-indexing.xml  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/logback.xml  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/mime.types  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/node1.cfg  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/node2.cfg  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/omero.properties  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/profiles/psql  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/rollover.cfg  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/Windows.cfg  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/error/maintainance.html  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/grid/README  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/grid/default.xml  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/grid/templates.xml  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/grid/windefault.xml  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/ice.config  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/internal.cfg  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/master.cfg  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/templates/robot.template  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/etc/testdropbox.config  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/history.rst  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/OMEZarrReader.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/activation.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/aggdesigner-algorithm.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/aircompressor.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/annotations.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/antlr.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/aopalliance.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/avatica-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/avatica-metrics.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/aws-java-sdk-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/aws-java-sdk-kms.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/aws-java-sdk-s3.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/base.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-all.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-anim.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-awt-util.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-bridge.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-codec.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-constants.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-css.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-dom.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-ext.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-extension.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-gui-util.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-gvt.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-i18n.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-parser.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-rasterizer-ext.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-rasterizer.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-script.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-slideshow.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-squiggle-ext.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-squiggle.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-svg-dom.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-svgbrowser.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-svggen.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-svgpp.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-svgrasterizer.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-swing.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-transcoder.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-ttf2svg.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-util.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/batik-xml.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/btm.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/bufr.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/c3p0.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/calcite-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/calcite-linq4j.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/cdm-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/checker-qual.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-beanutils.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-codec.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-collections.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-collections4.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-compiler.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-dbcp2.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-io.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-lang.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-lang3.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-logging.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/commons-pool2.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/dom4j.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ehcache.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/error_prone_annotations.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/esri-geometry-api.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/failureaccess.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/filters.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/fontbox.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/formats-api.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/formats-bsd.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/formats-gpl.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/glacier2.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/google-http-client-xml.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/google-http-client.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/guava.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/hamcrest-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/hazelcast-all.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/hibernate-commons-annotations.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/hibernate-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/hibernate-jpa-2.0-api.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/hibernate-search-analyzers.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/hibernate-search.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/httpclient.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/httpcore.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/httpmime.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/httpservices.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ice.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/icegrid.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/icestorm.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ini4j.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/j2objc-annotations.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jackson-annotations.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jackson-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jackson-databind.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jackson-dataformat-cbor.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jackson-dataformat-yaml.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jamon.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/janino.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/java-getopt.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/java-image-scaling.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/javassist.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/javax.activation.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/javax.mail.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jblosc.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jcip-annotations.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jcl-over-slf4j.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jgoodies-common.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jgoodies-forms.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jhdf5.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jmespath-java.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jna.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/joda-time.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/json-path.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/json.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jta.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jul-to-slf4j.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/junit.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jxrlib-all.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jython.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/jzarr.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/kryo.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/listenablefuture.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/logback-classic.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/logback-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-analyzers.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-highlighter.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-memory.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-misc.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-smartcn.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-spatial.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-spellchecker.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/lucene-stempel.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/memory.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/metadata-extractor.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/metakit.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/metrics-core.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/metrics-graphite.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/metrics-jvm.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/metrics-logback.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/minio.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/minlog.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/native-lib-loader.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/objenesis.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/okhttp.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/okio.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ome-codecs.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ome-common.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ome-jai.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ome-mdbtools.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ome-poi.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/ome-xml.jar  
09:27:36   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/omero-blitz.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/omero-common.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/omero-gateway.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/omero-model.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/omero-renderer.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/omero-romio.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/omero-server.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/pdfbox.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/perf4j.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/postgresql.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/protobuf-java.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/quartz.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/re2j.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/reflectasm.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/rhino.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/serializer.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/sketches-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/slf4j-api.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/snakeyaml.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/solr-analysis-extras.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/solr-commons-csv.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/solr-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/solr-solrj.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/specification.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-aop.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-beans.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-context-support.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-context.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-expression.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-jdbc.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-jms.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-ldap-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-messaging.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-orm.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-security-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-security-ldap.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/spring-tx.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/sqlite-jdbc.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/subethasmtp.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/turbojpeg.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/udunits.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/xalan.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/xercesImpl.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/xml-apis-ext.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/xml-apis.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/xmlgraphics-commons.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/xmpcore.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/client/xpp3.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/README.rst  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/3-3-2_rgb.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/fire.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/glasbey.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/glasbey_inverted.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/glow.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/grays.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ice.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/janelia/pup_br.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/janelia/pup_nr.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/16_colors.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/5_ramps.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/6_shades.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/blue_orange_icb.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/brgbcmyw.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/cool.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/edges.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/gem.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/phase.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/royal.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/sepia.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/smart.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/thal.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/thallium.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/ncsa_paledit/unionjack.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/physics.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/red-green.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/spectrum.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/thermal.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/cyan_hot.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/green_fire_blue.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/hilo.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/ica.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/ica2.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/ica3.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/magenta_hot.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/orange_hot.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/rainbow_rgb.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/red_hot.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/luts/wcif/yellow_hot.lut  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/analysis_scripts/Kymograph.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/analysis_scripts/Kymograph_Analysis.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/analysis_scripts/Plot_Profile.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/analysis_scripts/__init__.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/annotation_scripts/KeyVal_from_csv.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/annotation_scripts/KeyVal_to_csv.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/annotation_scripts/Remove_KeyVal.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/annotation_scripts/__init__.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/export_scripts/Batch_Image_Export.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/export_scripts/Batch_ROI_Export.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/export_scripts/Make_Movie.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/export_scripts/__init__.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/figure_scripts/Movie_Figure.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/figure_scripts/Movie_ROI_Figure.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/figure_scripts/ROI_Split_Figure.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/figure_scripts/Split_View_Figure.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/figure_scripts/Thumbnail_Figure.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/figure_scripts/__init__.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/import_scripts/Populate_Metadata.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/import_scripts/Populate_ROI.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/import_scripts/__init__.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/util_scripts/Channel_Offsets.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/util_scripts/Combine_Images.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/util_scripts/Dataset_To_Plate.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/util_scripts/Images_From_ROIs.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/util_scripts/Move_Annotations.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/scripts/omero/util_scripts/__init__.py  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/OMEZarrReader.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/activation.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/aggdesigner-algorithm.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/aircompressor.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/annotations.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/antlr.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/aopalliance.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/avatica-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/avatica-metrics.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/aws-java-sdk-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/aws-java-sdk-kms.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/aws-java-sdk-s3.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/base.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-all.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-anim.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-awt-util.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-bridge.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-codec.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-constants.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-css.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-dom.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-ext.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-extension.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-gui-util.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-gvt.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-i18n.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-parser.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-rasterizer-ext.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-rasterizer.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-script.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-slideshow.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-squiggle-ext.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-squiggle.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-svg-dom.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-svgbrowser.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-svggen.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-svgpp.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-svgrasterizer.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-swing.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-transcoder.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-ttf2svg.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-util.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/batik-xml.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/btm.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/bufr.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/c3p0.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/calcite-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/calcite-linq4j.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/cdm-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/checker-qual.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-beanutils.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-codec.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-collections.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-collections4.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-compiler.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-dbcp2.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-io.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-lang.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-lang3.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-logging.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/commons-pool2.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/dom4j.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ehcache.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/error_prone_annotations.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/esri-geometry-api.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/failureaccess.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/filters.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/fontbox.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/formats-api.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/formats-bsd.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/formats-gpl.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/glacier2.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/google-http-client-xml.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/google-http-client.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/guava.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/hamcrest-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/hazelcast-all.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/hibernate-commons-annotations.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/hibernate-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/hibernate-jpa-2.0-api.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/hibernate-search-analyzers.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/hibernate-search.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/httpclient.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/httpcore.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/httpmime.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/httpservices.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ice.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/icegrid.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/icestorm.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ini4j.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/j2objc-annotations.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jackson-annotations.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jackson-core.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jackson-databind.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jackson-dataformat-cbor.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jackson-dataformat-yaml.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jamon.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/janino.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/java-getopt.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/java-image-scaling.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/javassist.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/javax.activation.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/javax.mail.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jblosc.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jcip-annotations.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jcl-over-slf4j.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jgoodies-common.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jgoodies-forms.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jhdf5.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jmespath-java.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jna.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/joda-time.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/json-path.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/json.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jta.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jul-to-slf4j.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/junit.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jxrlib-all.jar  
09:27:37   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jython.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/jzarr.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/kryo.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/listenablefuture.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/logback-classic.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/logback-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-analyzers.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-highlighter.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-memory.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-misc.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-smartcn.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-spatial.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-spellchecker.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/lucene-stempel.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/memory.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/metadata-extractor.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/metakit.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/metrics-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/metrics-graphite.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/metrics-jvm.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/metrics-logback.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/minio.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/minlog.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/native-lib-loader.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/objenesis.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/okhttp.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/okio.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ome-codecs.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ome-common.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ome-jai.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ome-mdbtools.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ome-poi.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/ome-xml.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/omero-blitz.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/omero-common.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/omero-gateway.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/omero-model.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/omero-renderer.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/omero-romio.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/omero-server.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/pdfbox.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/perf4j.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/postgresql.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/protobuf-java.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/quartz.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/re2j.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/reflectasm.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/rhino.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/serializer.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/sketches-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/slf4j-api.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/snakeyaml.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/solr-analysis-extras.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/solr-commons-csv.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/solr-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/solr-solrj.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/specification.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-aop.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-beans.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-context-support.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-context.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-expression.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-jdbc.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-jms.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-ldap-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-messaging.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-orm.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-security-core.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-security-ldap.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/spring-tx.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/sqlite-jdbc.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/subethasmtp.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/turbojpeg.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/udunits.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/xalan.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/xercesImpl.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/xml-apis-ext.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/xml-apis.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/xmlgraphics-commons.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/xmpcore.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/lib/server/xpp3.jar  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/README  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/agpl.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/antlr.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/apache-v1.1.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/apache-v2.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/asm.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/bouncy_castle_license.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/bsd.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/cddl-v1.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/cpl-v10.html  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/crystalclear.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/django.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/dom4j.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/epl-v1.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/fbsd.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/freemarker.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/gpl-v2.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/gpl.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/gtest.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/iconsweets_license.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/jamon.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/jmock.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/jquery.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/jtidy.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/lgpl-3.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/lgpl-v2.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/lgpl-v2.1.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/lgpl-v3.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/lgpl.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/matplotlib.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/mit.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/mpl-v1_0.htm  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/npl-1_1.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/path.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/pil.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/postgresql.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/psf-v2.0.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/psf-v2.5.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/scons.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/slf4j.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/tablelayout.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/which.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/zlib-libpng.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/share/licenses/zpl-v2.1.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/README.txt  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/misc/Makefile  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/misc/current.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/misc/enums.py  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__4/OMERO3__1.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__5/OMERO3__4.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__6/OMERO3__5.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO3__7/OMERO3__6.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/psql-footer.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/psql-header.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/schema.sql  
09:27:38   inflating: OMERO.server-5.6.3-460-8485a3c827-ice36/sql/psql/OMERO5.4__0/views.sql  
09:27:38 + rm -f OMERO.server-5.6.3-460-8485a3c827-ice36.zip
09:27:38 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-460-8485a3c827-ice36 /home/omero/workspace/OMERO-server/OMERO.server
09:27:38 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:27:38 ++ deactivate nondestructive
09:27:38 ++ '[' -n '' ']'
09:27:38 ++ '[' -n '' ']'
09:27:38 ++ '[' -n /bin/bash -o -n '' ']'
09:27:38 ++ hash -r
09:27:38 ++ '[' -n '' ']'
09:27:38 ++ unset VIRTUAL_ENV
09:27:38 ++ '[' '!' nondestructive = nondestructive ']'
09:27:38 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:27:38 ++ export VIRTUAL_ENV
09:27:38 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:27:38 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:27:38 ++ export PATH
09:27:38 ++ '[' -n '' ']'
09:27:38 ++ '[' -z '' ']'
09:27:38 ++ _OLD_VIRTUAL_PS1=
09:27:38 ++ PS1='(.venv3) '
09:27:38 ++ export PS1
09:27:38 ++ '[' -n /bin/bash -o -n '' ']'
09:27:38 ++ hash -r
09:27:38 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
09:27:38 Collecting zeroc-ice==3.6.5
09:27:39   Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
09:27:41 Installing collected packages: zeroc-ice
09:27:41 Successfully installed zeroc-ice-3.6.5
09:27:41 + pip install -U pip future
09:27:42 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
09:27:42 Collecting pip
09:27:42   Using cached pip-24.0-py3-none-any.whl (2.1 MB)
09:27:42 Collecting future
09:27:42   Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:27:42 Installing collected packages: pip, future
09:27:42   Attempting uninstall: pip
09:27:42     Found existing installation: pip 21.2.3
09:27:42     Uninstalling pip-21.2.3:
09:27:42       Successfully uninstalled pip-21.2.3
09:27:44 Successfully installed future-1.0.0 pip-24.0
09:27:44 + pip install markdown
09:27:45 Collecting markdown
09:27:45   Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
09:27:45 Collecting importlib-metadata>=4.4 (from markdown)
09:27:45   Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
09:27:45 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
09:27:45   Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
09:27:45 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
09:27:45 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
09:27:45 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
09:27:45 Installing collected packages: zipp, importlib-metadata, markdown
09:27:45 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
09:27:45 + pip install reportlab
09:27:46 Collecting reportlab
09:27:46   Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB)
09:27:46 Collecting pillow>=9.0.0 (from reportlab)
09:27:46   Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
09:27:46 Collecting chardet (from reportlab)
09:27:46   Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
09:27:46 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB)
09:27:46 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
09:27:46 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
09:27:46 Installing collected packages: pillow, chardet, reportlab
09:27:48 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0
09:27:48 + pip install omego
09:27:48 Collecting omego
09:27:48   Using cached omego-0.7.0-py3-none-any.whl
09:27:48 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
09:27:48 Collecting yaclifw>=0.1.1 (from omego)
09:27:48   Using cached yaclifw-0.2.0-py3-none-any.whl
09:27:48 Collecting six (from yaclifw>=0.1.1->omego)
09:27:48   Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
09:27:48 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
09:27:49 Installing collected packages: six, yaclifw, omego
09:27:49 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
09:27:49 + pip install tables
09:27:49 Collecting tables
09:27:49   Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
09:27:50 Collecting numpy>=1.19.0 (from tables)
09:27:50   Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
09:27:50 Collecting numexpr>=2.6.2 (from tables)
09:27:50   Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
09:27:50 Collecting packaging (from tables)
09:27:50   Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
09:27:50 Collecting py-cpuinfo (from tables)
09:27:50   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:27:50 Collecting blosc2>=2.3.0 (from tables)
09:27:51   Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
09:27:51 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
09:27:51   Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
09:27:51 Collecting msgpack (from blosc2>=2.3.0->tables)
09:27:51   Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
09:27:51 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
09:27:51 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
09:27:51 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB)
09:27:51 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
09:27:51 Using cached packaging-24.0-py3-none-any.whl (53 kB)
09:27:51 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:27:51 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
09:27:51 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
09:27:52 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
09:27:55 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
09:27:55 + pip install jinja2
09:27:55 Collecting jinja2
09:27:55   Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
09:27:55 Collecting MarkupSafe>=2.0 (from jinja2)
09:27:55   Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
09:27:55 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
09:27:55 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
09:27:56 Installing collected packages: MarkupSafe, jinja2
09:27:56 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
09:27:56 + pip install omero-py
09:27:56 Collecting omero-py
09:27:56   Using cached omero_py-5.19.2-py3-none-any.whl.metadata (6.6 kB)
09:27:56 Collecting urllib3<2 (from omero-py)
09:27:56   Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
09:27:56 Collecting appdirs (from omero-py)
09:27:56   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:27:56 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
09:27:56 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
09:27:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0)
09:27:56 Collecting PyYAML (from omero-py)
09:27:56   Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
09:27:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
09:27:56 Collecting requests (from omero-py)
09:27:56   Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
09:27:56 Collecting portalocker (from omero-py)
09:27:57   Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
09:27:57 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
09:27:57   Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
09:27:57 Collecting idna<4,>=2.5 (from requests->omero-py)
09:27:57   Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
09:27:57 Collecting certifi>=2017.4.17 (from requests->omero-py)
09:27:57   Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
09:27:57 Using cached omero_py-5.19.2-py3-none-any.whl (2.8 MB)
09:27:57 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
09:27:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:27:57 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
09:27:57 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
09:27:57 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
09:27:57 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
09:27:57 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
09:27:57 Using cached idna-3.7-py3-none-any.whl (66 kB)
09:27:57 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
09:27:59 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.2 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
09:27:59 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:28:00 Collecting omero-metadata
09:28:00   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-qnkb45t7/omero-metadata_2dd415f7c5d34495bae68667ceae7b9c
09:28:00   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-qnkb45t7/omero-metadata_2dd415f7c5d34495bae68667ceae7b9c
09:28:01   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 40b65ba4f8f0d6e1dae74e667620ccbfd203750b
09:28:01   Installing build dependencies: started
09:28:03   Installing build dependencies: finished with status 'done'
09:28:03   Getting requirements to build wheel: started
09:28:04   Getting requirements to build wheel: finished with status 'done'
09:28:04   Installing backend dependencies: started
09:28:05   Installing backend dependencies: finished with status 'done'
09:28:05   Preparing metadata (pyproject.toml): started
09:28:05   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.2)
09:28:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
09:28:05 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
09:28:05 Collecting pandas (from omero-metadata)
09:28:05   Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
09:28:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
09:28:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:28:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:28:05 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
09:28:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0)
09:28:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:28:05 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
09:28:05 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
09:28:05 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
09:28:05 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
09:28:05   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:28:05 Collecting pytz>=2020.1 (from pandas->omero-metadata)
09:28:05   Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
09:28:05 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
09:28:05   Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
09:28:05 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
09:28:05 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
09:28:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
09:28:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
09:28:05 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
09:28:06 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:28:06 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
09:28:06 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
09:28:06 Building wheels for collected packages: omero-metadata
09:28:06   Building wheel for omero-metadata (pyproject.toml): started
09:28:06   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:28:06   Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=49f6ce2be0d8ca5b465d8b591330299312826542126cff78f601172a929164d1
09:28:06   Stored in directory: /tmp/pip-ephem-wheel-cache-sz0lwpal/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
09:28:06 Successfully built omero-metadata
09:28:06 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
09:28:11 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
09:28:11 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:28:12 Collecting omero-cli-render
09:28:12   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-_4nhf6cw/omero-cli-render_c60434bf7acd4c289c1b196835bd7720
09:28:12   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-_4nhf6cw/omero-cli-render_c60434bf7acd4c289c1b196835bd7720
09:28:13   Running command git checkout -b merge_ci --track origin/merge_ci
09:28:13   Switched to a new branch 'merge_ci'
09:28:13   branch 'merge_ci' set up to track 'origin/merge_ci'.
09:28:13   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 29940f6c0f6a5bd1e36ba2f6b442701a7e3fa72e
09:28:13   Installing build dependencies: started
09:28:15   Installing build dependencies: finished with status 'done'
09:28:15   Getting requirements to build wheel: started
09:28:15   Getting requirements to build wheel: finished with status 'done'
09:28:15   Installing backend dependencies: started
09:28:16   Installing backend dependencies: finished with status 'done'
09:28:16   Preparing metadata (pyproject.toml): started
09:28:16   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:16 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
09:28:16 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.2)
09:28:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
09:28:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
09:28:16 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:28:16 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
09:28:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0)
09:28:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:28:16 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
09:28:16 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
09:28:16 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
09:28:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
09:28:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
09:28:16 Building wheels for collected packages: omero-cli-render
09:28:16   Building wheel for omero-cli-render (pyproject.toml): started
09:28:16   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:28:16   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=2b0aff209878cc975e72d4160cd3ecb22eb3a5562e45d5d48af825f1135f17d3
09:28:16   Stored in directory: /tmp/pip-ephem-wheel-cache-24cw616b/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
09:28:16 Successfully built omero-cli-render
09:28:16 Installing collected packages: omero-cli-render
09:28:16 Successfully installed omero-cli-render-0.8.1.dev0
09:28:17 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:28:17 Collecting omero-cli-duplicate
09:28:17   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-g0jt0pxg/omero-cli-duplicate_45c0d070da324cf2aa1781918952844f
09:28:17   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-g0jt0pxg/omero-cli-duplicate_45c0d070da324cf2aa1781918952844f
09:28:18   Running command git checkout -b merge_ci --track origin/merge_ci
09:28:19   Switched to a new branch 'merge_ci'
09:28:19   branch 'merge_ci' set up to track 'origin/merge_ci'.
09:28:19   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 8ca1a9981b8c06672de244ef4408fa836b0ac15e
09:28:19   Installing build dependencies: started
09:28:21   Installing build dependencies: finished with status 'done'
09:28:21   Getting requirements to build wheel: started
09:28:21   Getting requirements to build wheel: finished with status 'done'
09:28:21   Installing backend dependencies: started
09:28:22   Installing backend dependencies: finished with status 'done'
09:28:22   Preparing metadata (pyproject.toml): started
09:28:22   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:22 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.2)
09:28:22 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
09:28:22 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:28:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:28:22 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
09:28:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0)
09:28:22 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
09:28:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:28:22 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
09:28:22 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
09:28:22 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
09:28:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
09:28:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
09:28:22 Building wheels for collected packages: omero-cli-duplicate
09:28:22   Building wheel for omero-cli-duplicate (pyproject.toml): started
09:28:23   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:28:23   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=3ac6e0bd46f341e0e87cdbc606725759c46c8ea2cc66f84fa1b64193188413f7
09:28:23   Stored in directory: /tmp/pip-ephem-wheel-cache-_7edzfhe/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
09:28:23 Successfully built omero-cli-duplicate
09:28:23 Installing collected packages: omero-cli-duplicate
09:28:23 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:28:23 + pip install omero-certificates
09:28:23 Collecting omero-certificates
09:28:23   Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
09:28:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.2)
09:28:24 Collecting distro==1.8.0 (from omero-certificates)
09:28:24   Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
09:28:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
09:28:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
09:28:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
09:28:24 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
09:28:24 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0)
09:28:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
09:28:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
09:28:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
09:28:24 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
09:28:24 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
09:28:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
09:28:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
09:28:24 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
09:28:24 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
09:28:24 Installing collected packages: distro, omero-certificates
09:28:24 Successfully installed distro-1.8.0 omero-certificates-0.3.2
09:28:24 + for x in *.tar.gz
09:28:24 + pip install -U omero_dropbox-5.6.3.dev0.tar.gz
09:28:24 Processing ./omero_dropbox-5.6.3.dev0.tar.gz
09:28:24   Installing build dependencies: started
09:28:26   Installing build dependencies: finished with status 'done'
09:28:26   Getting requirements to build wheel: started
09:28:26   Getting requirements to build wheel: finished with status 'done'
09:28:26   Installing backend dependencies: started
09:28:27   Installing backend dependencies: finished with status 'done'
09:28:27   Preparing metadata (pyproject.toml): started
09:28:27   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:27 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.2)
09:28:27 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
09:28:27 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
09:28:27 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
09:28:27 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
09:28:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0)
09:28:27 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
09:28:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
09:28:27 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
09:28:27 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
09:28:27 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
09:28:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.7)
09:28:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
09:28:27 Building wheels for collected packages: omero-dropbox
09:28:27   Building wheel for omero-dropbox (pyproject.toml): started
09:28:28   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
09:28:28   Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=eab3167c064e89a608c297d3baee23842028a550a4be3bcacf67822ce6c0adee
09:28:28   Stored in directory: /home/omero/.cache/pip/wheels/f4/cc/2d/e8cb90723edb0dd09a23d7e300334e5aa51dc6579befeaf8c6
09:28:28 Successfully built omero-dropbox
09:28:28 Installing collected packages: omero-dropbox
09:28:28 Successfully installed omero-dropbox-5.6.3.dev0
09:28:28 + for x in *.tar.gz
09:28:28 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
09:28:28 Processing ./omero_marshal-0.9.1.dev0.tar.gz
09:28:28   Installing build dependencies: started
09:28:30   Installing build dependencies: finished with status 'done'
09:28:30   Getting requirements to build wheel: started
09:28:31   Getting requirements to build wheel: finished with status 'done'
09:28:31   Installing backend dependencies: started
09:28:32   Installing backend dependencies: finished with status 'done'
09:28:32   Preparing metadata (pyproject.toml): started
09:28:32   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:32 Building wheels for collected packages: omero_marshal
09:28:32   Building wheel for omero_marshal (pyproject.toml): started
09:28:33   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
09:28:33   Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=87f1799dea2b77abf735afe11700e435978d5502a99b4d16e06899b63e0bf583
09:28:33   Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
09:28:33 Successfully built omero_marshal
09:28:33 Installing collected packages: omero_marshal
09:28:33 Successfully installed omero_marshal-0.9.1.dev0
09:28:33 + for x in *.tar.gz
09:28:33 + pip install -U omero_py-5.19.3.dev0.tar.gz
09:28:34 Processing ./omero_py-5.19.3.dev0.tar.gz
09:28:34   Installing build dependencies: started
09:28:35   Installing build dependencies: finished with status 'done'
09:28:35   Getting requirements to build wheel: started
09:28:36   Getting requirements to build wheel: finished with status 'done'
09:28:36   Installing backend dependencies: started
09:28:37   Installing backend dependencies: finished with status 'done'
09:28:37   Preparing metadata (pyproject.toml): started
09:28:37   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.18)
09:28:37 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.4.4)
09:28:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.0.0)
09:28:37 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.4)
09:28:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (10.3.0)
09:28:37 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (6.0.1)
09:28:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (3.6.5)
09:28:37 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.31.0)
09:28:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.8.2)
09:28:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.3.2)
09:28:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.7)
09:28:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (2024.2.2)
09:28:37 Building wheels for collected packages: omero-py
09:28:37   Building wheel for omero-py (pyproject.toml): started
09:28:38   Building wheel for omero-py (pyproject.toml): finished with status 'done'
09:28:38   Created wheel for omero-py: filename=omero_py-5.19.3.dev0-py3-none-any.whl size=2782819 sha256=f06f02e6d54fbb63fa9f9ed6938f3122fcf2d9e203acc04e4b4cec37412b4aa2
09:28:38   Stored in directory: /home/omero/.cache/pip/wheels/da/30/d3/f2a83bdd6a0fbad84aa00dad9eb9431eedebb0e1310be5dd41
09:28:38 Successfully built omero-py
09:28:39 Installing collected packages: omero-py
09:28:39   Attempting uninstall: omero-py
09:28:39     Found existing installation: omero-py 5.19.2
09:28:39     Uninstalling omero-py-5.19.2:
09:28:39       Successfully uninstalled omero-py-5.19.2
09:28:41 Successfully installed omero-py-5.19.3.dev0
09:28:41 + for x in *.tar.gz
09:28:41 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
09:28:41 Processing ./omero_scripts-5.8.3.dev0.tar.gz
09:28:41   Installing build dependencies: started
09:28:43   Installing build dependencies: finished with status 'done'
09:28:43   Getting requirements to build wheel: started
09:28:43   Getting requirements to build wheel: finished with status 'done'
09:28:43   Installing backend dependencies: started
09:28:44   Installing backend dependencies: finished with status 'done'
09:28:44   Preparing metadata (pyproject.toml): started
09:28:44   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:44 Building wheels for collected packages: omero-scripts
09:28:44   Building wheel for omero-scripts (pyproject.toml): started
09:28:45   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
09:28:45   Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=f23e8e99a1a90b92c4271068e465712922fc65fafac8458a159f840562d2998a
09:28:45   Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
09:28:45 Successfully built omero-scripts
09:28:45 Installing collected packages: omero-scripts
09:28:45 Successfully installed omero-scripts-5.8.3.dev0
09:28:45 + for x in *.tar.gz
09:28:45 + pip install -U omero_web-5.25.1.dev0.tar.gz
09:28:46 Processing ./omero_web-5.25.1.dev0.tar.gz
09:28:46   Installing build dependencies: started
09:28:47   Installing build dependencies: finished with status 'done'
09:28:47   Getting requirements to build wheel: started
09:28:48   Getting requirements to build wheel: finished with status 'done'
09:28:48   Installing backend dependencies: started
09:28:49   Installing backend dependencies: finished with status 'done'
09:28:49   Preparing metadata (pyproject.toml): started
09:28:49   Preparing metadata (pyproject.toml): finished with status 'done'
09:28:49 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.3.dev0)
09:28:49 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
09:28:49   Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
09:28:49 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
09:28:49   Using cached Django-4.2.12-py3-none-any.whl.metadata (4.2 kB)
09:28:49 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
09:28:49   Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
09:28:49 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
09:28:49   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
09:28:49 Collecting django-csp (from omero-web==5.25.1.dev0)
09:28:49   Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
09:28:50 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
09:28:50   Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
09:28:50 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
09:28:50   Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
09:28:50 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
09:28:50 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0)
09:28:50 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
09:28:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
09:28:50 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
09:28:50 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
09:28:50   Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
09:28:50 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
09:28:50   Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
09:28:50 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
09:28:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
09:28:50 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
09:28:50 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
09:28:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
09:28:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
09:28:50 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
09:28:50 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
09:28:50   Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
09:28:50 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
09:28:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7)
09:28:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
09:28:50 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
09:28:50 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
09:28:50 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
09:28:50 Using cached Django-4.2.12-py3-none-any.whl (8.0 MB)
09:28:50 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
09:28:50 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
09:28:50 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
09:28:50 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
09:28:50 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
09:28:50 Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
09:28:50 Building wheels for collected packages: omero-web
09:28:50   Building wheel for omero-web (pyproject.toml): started
09:28:51   Building wheel for omero-web (pyproject.toml): finished with status 'done'
09:28:51   Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2768887 sha256=b890df4888fff23a0851016adf7e3ca11c47e3427b48d8c5a77391db7a9c73db
09:28:51   Stored in directory: /home/omero/.cache/pip/wheels/33/ba/09/ce4e387d041ff0c2197723e41a9f679d0a8e4d0d4f906c19c9
09:28:51 Successfully built omero-web
09:28:52 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
09:28:54 Successfully installed Django-4.2.12 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.25.1.dev0 sqlparse-0.5.0 typing-extensions-4.11.0 whitenoise-6.6.0
09:28:55 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:28:56 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:28:56 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:28:56 --2024-05-07 09:28:56--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
09:28:56 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.109.133, ...
09:28:56 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
09:28:56 HTTP request sent, awaiting response... 200 OK
09:28:56 Length: 94763 (93K) [text/plain]
09:28:56 Saving to: ‘Figure_To_Pdf.py’
09:28:56 
09:28:56      0K .......... .......... .......... .......... .......... 54% 2.88M 0s
09:28:56     50K .......... .......... .......... .......... ..        100% 7.33M=0.02s
09:28:56 
09:28:56 2024-05-07 09:28:56 (4.00 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763]
09:28:56 
09:28:56 + chmod 755 Figure_To_Pdf.py
09:28:56 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
09:28:56 + omero config set omero.db.name OMERO-server
09:28:58 + omero config set omero.db.host pg
09:28:59 + omero config set omero.db.user postgres
09:29:00 + omero config set omero.data.dir /home/omero/omero-server-data
09:29:01 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
09:29:03 + omero config set omero.db.poolsize 25
09:29:04 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
09:29:05 + omero config set omero.security.trustStorePassword changeit
09:29:06 + omero config set omero.mail.config true
09:29:08 + omero config set omero.mail.from qa@openmicroscopy.org.uk
09:29:09 + omero config set omero.mail.host smtp.dundee.ac.uk
09:29:10 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
09:29:12 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
09:29:13 + omero certificates
09:29:14 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
09:29:14 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
09:29:14 + '[' false = true ']'
09:29:14 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
09:29:14 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
09:29:14 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
09:29:14 2024-05-07 09:29:14,959 [    omego.db] DEBUG            dbcommand => upgrade
09:29:14 2024-05-07 09:29:14,959 [    omego.db] DEBUG               dbhost => localhost
09:29:14 2024-05-07 09:29:14,959 [    omego.db] DEBUG               dbname => OMERO-server
09:29:14 2024-05-07 09:29:14,959 [    omego.db] DEBUG               dbpass => omero
09:29:14 2024-05-07 09:29:14,959 [    omego.db] DEBUG               dbuser => omero
09:29:14 2024-05-07 09:29:14,959 [    omego.db] DEBUG             rootpass => omero
09:29:14 2024-05-07 09:29:14,959 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
09:29:14 2024-05-07 09:29:14,959 [omego.extern] INFO  Executing : omero version
09:29:16 OMERO.py version:
09:29:16 OMERO.server version:
09:29:16 5.6.3-460-8485a3c827-ice36
09:29:16 5.19.3.dev0
09:29:16 2024-05-07 09:29:16,282 [omego.extern] INFO  Completed [1.323 s]
09:29:16 2024-05-07 09:29:16,282 [omego.extern] DEBUG Using omero CLI from omero
09:29:16 2024-05-07 09:29:16,282 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
09:29:16 2024-05-07 09:29:16,282 [omego.extern] INFO  Running [current environment]: omero config get --show-password
09:29:16 2024-05-07 09:29:16,282 [omego.extern] INFO  Executing : omero config get --show-password
09:29:17 2024-05-07 09:29:17,536 [omego.extern] INFO  Completed [1.253 s]
09:29:17 2024-05-07 09:29:17,536 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
09:29:17 2024-05-07 09:29:17,536 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
09:29:17 2024-05-07 09:29:17,719 [omego.extern] INFO  Completed [0.182 s]
09:29:17 2024-05-07 09:29:17,719 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
09:29:17 2024-05-07 09:29:17,719 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.2
09:29:17 
09:29:17 2024-05-07 09:29:17,719 [omego.extern] INFO  Running [current environment]: omero config get --show-password
09:29:17 2024-05-07 09:29:17,719 [omego.extern] INFO  Executing : omero config get --show-password
09:29:19 2024-05-07 09:29:19,067 [omego.extern] INFO  Completed [1.348 s]
09:29:19 2024-05-07 09:29:19,067 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
09:29:19 2024-05-07 09:29:19,067 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
09:29:19 2024-05-07 09:29:19,179 [omego.extern] INFO  Completed [0.111 s]
09:29:19 2024-05-07 09:29:19,179 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.9") at port "5432".\n'
09:29:19 2024-05-07 09:29:19,179 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:29:19 2024-05-07 09:29:19,179 [omego.extern] INFO  Running [current environment]: omero config get --show-password
09:29:19 2024-05-07 09:29:19,179 [omego.extern] INFO  Executing : omero config get --show-password
09:29:20 2024-05-07 09:29:20,511 [omego.extern] INFO  Completed [1.332 s]
09:29:20 2024-05-07 09:29:20,511 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
09:29:20 2024-05-07 09:29:20,511 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:29:21 2024-05-07 09:29:21,112 [omego.extern] INFO  Completed [0.600 s]
09:29:21 2024-05-07 09:29:21,112 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
09:29:21 2024-05-07 09:29:21,112 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
09:29:21 2024-05-07 09:29:21,114 [    omego.db] INFO  Database is already at OMERO5.4__0
09:29:21 + export LANG=en_US.UTF-8
09:29:21 + LANG=en_US.UTF-8
09:29:21 + export LANGUAGE=en_US:en
09:29:21 + LANGUAGE=en_US:en
09:29:21 + export LC_ALL=en_US.UTF-8
09:29:21 + LC_ALL=en_US.UTF-8
09:29:21 + BUILD_ID=DONT_KILL_ME
09:29:21 + omero admin start
09:29:30 No descriptor given. Using etc/grid/default.xml
09:29:39 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
09:29:39 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
09:29:39 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
09:29:39 Waiting on startup. Use CTRL-C to exit
09:29:39 + omero admin waitup
09:29:40 Waiting on startup. Use CTRL-C to exit
09:29:40 + omero admin diagnostics
09:29:42 
09:29:42 ================================================================================
09:29:42 OMERO Diagnostics (admin)
09:29:42 ================================================================================
09:29:42         
09:29:42 Commands:   java -version                  17.0.11   (/usr/bin/java)
09:29:42 Commands:   python -V                      3.9.18    (/home/omero/workspace/OMERO-server/.venv3/bin/python)
09:29:42 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
09:29:42 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
09:29:42 Commands:   psql --version                 16.2      (/usr/bin/psql)
09:29:42 Commands:   openssl version                3.0.71    (/usr/bin/openssl)
09:29:42 
09:29:42 Component:  OMERO.py                       5.19.3.dev0
09:29:42 Component:  OMERO.server                   5.6.3-460-8485a3c827-ice36
09:29:42 
09:29:42 Server:     icegridnode                    running
09:29:42 Server:     Blitz-0                        active (pid = 2552, enabled)
09:29:42 Server:     Indexer-0                      activating (enabled)
09:29:42 Server:     OMERO.Glacier2                 active (pid = 2583, enabled)
09:29:42 Server:     OMERO.IceStorm                 active (pid = 2609, enabled)
09:29:42 Server:     Processor-0                    activating (enabled)
09:29:42 Server:     Tables-0                       activating (enabled)
09:29:42 
09:29:42 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
09:29:42 Log files:  Blitz-0.log                    20.7 KB       errors=0    warnings=1   
09:29:42 Log files:  DropBox.log                    n/a
09:29:42 Log files:  FileServer.log                 n/a
09:29:42 Log files:  Indexer-0.log                  358 B        
09:29:42 Log files:  MonitorServer.log              n/a
09:29:42 Log files:  Processor-0.log                281 B        
09:29:42 Log files:  Tables-0.log                   281 B        
09:29:42 Log files:  TestDropBox.log                n/a
09:29:42 Log files:  master.err                     empty
09:29:42 Log files:  master.out                     30.1 KB      
09:29:42 Log files:  Total size                     0.05 MB
09:29:42 
09:29:42 
09:29:42 Environment:OMERO_HOME=(unset)             
09:29:42 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
09:29:42 Environment:OMERO_NODE=(unset)             
09:29:42 Environment:OMERO_MASTER=(unset)           
09:29:42 Environment:OMERO_USERDIR=(unset)          
09:29:42 Environment:OMERO_TMPDIR=(unset)           
09:29:42 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
09:29:42 Environment:PYTHONPATH=(unset)             
09:29:42 Environment:ICE_HOME=/opt/ice-3.6.5        
09:29:42 Environment:LD_LIBRARY_PATH=(unset)        
09:29:42 Environment:DYLD_LIBRARY_PATH=(unset)      
09:29:42 
09:29:42 OMERO SSL port:4064                           
09:29:42 OMERO TCP port:4063                           
09:29:42 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
09:29:42 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
09:29:42 
09:29:42 JVM settings: Blitz-${index}                -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:29:42 JVM settings: Indexer-${index}              -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:29:42 JVM settings: PixelData-${index}            -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:29:42 JVM settings: Repository-${index}           -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
09:29:42 
09:29:42 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.0.0-SNAPSHOT	7 May 2024	e6a6b88aa0d1d89b791260f3414327f3049386ba
09:29:42 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.0.0-SNAPSHOT	7 May 2024	e6a6b88aa0d1d89b791260f3414327f3049386ba
09:29:42 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.0.0-SNAPSHOT	7 May 2024	e6a6b88aa0d1d89b791260f3414327f3049386ba
09:29:42 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.0.4-SNAPSHOT	7 May 2024	b548b6e32f8d28dad8f493eb8a6672c53028047a
09:29:42 Jar:        lib/server/ome-common.jar      OME Common Java	6.0.23-SNAPSHOT	7 May 2024	b548b6e32f8d28dad8f493eb8a6672c53028047a
09:29:42 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5-SNAPSHOT	7 May 2024	b548b6e32f8d28dad8f493eb8a6672c53028047a
09:29:42 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4-SNAPSHOT	7 May 2024	b548b6e32f8d28dad8f493eb8a6672c53028047a
09:29:42 Jar:        lib/server/ome-poi.jar         OME POI	5.3.10-SNAPSHOT	7 May 2024	b548b6e32f8d28dad8f493eb8a6672c53028047a
09:29:42 Jar:        lib/server/ome-xml.jar         OME XML library	6.3.7-SNAPSHOT	7 May 2024	b548b6e32f8d28dad8f493eb8a6672c53028047a
09:29:42 Jar:        lib/server/omero-blitz.jar     jar	5.7.3-SNAPSHOT		
09:29:42 Jar:        lib/server/omero-common.jar    jar	5.6.5-SNAPSHOT		
09:29:42 Jar:        lib/server/omero-gateway.jar   jar	5.9.1-SNAPSHOT		
09:29:42 Jar:        lib/server/omero-model.jar     jar	5.6.14-SNAPSHOT		
09:29:42 Jar:        lib/server/omero-renderer.jar  jar	5.5.16-SNAPSHOT		
09:29:42 Jar:        lib/server/omero-romio.jar     jar	5.7.6-SNAPSHOT		
09:29:42 Jar:        lib/server/omero-server.jar    jar	5.6.11-SNAPSHOT		
09:29:42 + deactivate
09:29:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:29:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:29:42 + export PATH
09:29:42 + unset _OLD_VIRTUAL_PATH
09:29:42 + '[' -n '' ']'
09:29:42 + '[' -n /bin/bash -o -n '' ']'
09:29:42 + hash -r
09:29:42 + '[' -n '' ']'
09:29:42 + unset VIRTUAL_ENV
09:29:42 + '[' '!' '' = nondestructive ']'
09:29:42 + unset -f deactivate
09:29:43 Finished: SUCCESS