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00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/postgresql.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/psf-v2.0.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/psf-v2.5.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/scons.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/slf4j.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/tablelayout.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/which.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/zlib-libpng.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/share/licenses/zpl-v2.1.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/README.txt
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/misc/Makefile
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/misc/current.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/misc/enums.py
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__1/OMERO3__7.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__3/OMERO3__5.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__4/OMERO3__5.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3__4/OMERO3__1.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3__5/OMERO3__4.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3__6/OMERO3__5.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO3__7/OMERO3__6.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO4__0/OMERO3A__11.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/psql-footer.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/psql-header.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/schema.sql
00:52:10 inflating: OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50/sql/psql/OMERO5.4__0/views.sql
00:52:10 + rm -f OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50.zip
00:52:10 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-593-6c88b4e1e5-ice36-b50 /home/omero/workspace/OMERO-server/OMERO.server
00:52:10 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:52:10 + awsSdkVersion=2.34.6
00:52:10 + jacksonVersion=2.20.0
00:52:10 + logbackVersion=1.3.14
00:52:10 + zarrJavaVersion=0.0.10
00:52:10 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:52:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:11 --2026-02-11 00:52:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:52:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:12 HTTP request sent, awaiting response... 200 OK
00:52:12 Length: 4083366 (3.9M) [application/java-archive]
00:52:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:52:12
00:52:12 0K .......... .......... .......... .......... .......... 1% 3.28M 1s
00:52:12 50K .......... .......... .......... .......... .......... 2% 8.51M 1s
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00:52:12 2950K .......... .......... .......... .......... .......... 75% 24.8M 0s
00:52:12 3000K .......... .......... .......... .......... .......... 76% 14.0M 0s
00:52:12 3050K .......... .......... .......... .......... .......... 77% 18.9M 0s
00:52:12 3100K .......... .......... .......... .......... .......... 78% 18.4M 0s
00:52:12 3150K .......... .......... .......... .......... .......... 80% 16.1M 0s
00:52:12 3200K .......... .......... .......... .......... .......... 81% 26.7M 0s
00:52:12 3250K .......... .......... .......... .......... .......... 82% 13.9M 0s
00:52:12 3300K .......... .......... .......... .......... .......... 84% 23.1M 0s
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00:52:12 3400K .......... .......... .......... .......... .......... 86% 23.5M 0s
00:52:12 3450K .......... .......... .......... .......... .......... 87% 15.5M 0s
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00:52:12 3700K .......... .......... .......... .......... .......... 94% 16.0M 0s
00:52:12 3750K .......... .......... .......... .......... .......... 95% 15.7M 0s
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00:52:12 3850K .......... .......... .......... .......... .......... 97% 21.8M 0s
00:52:12 3900K .......... .......... .......... .......... .......... 99% 11.5M 0s
00:52:12 3950K .......... .......... .......... ....... 100% 45.2M=0.2s
00:52:12
00:52:12 2026-02-11 00:52:12 (15.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:52:12
00:52:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:52:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:12 --2026-02-11 00:52:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:52:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:12 HTTP request sent, awaiting response... 200 OK
00:52:12 Length: 234962 (229K) [application/java-archive]
00:52:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:52:12
00:52:12 0K .......... .......... .......... .......... .......... 21% 35.8M 0s
00:52:12 50K .......... .......... .......... .......... .......... 43% 3.59M 0s
00:52:12 100K .......... .......... .......... .......... .......... 65% 73.2M 0s
00:52:12 150K .......... .......... .......... .......... .......... 87% 3.83M 0s
00:52:12 200K .......... .......... ......... 100% 245M=0.03s
00:52:12
00:52:12 2026-02-11 00:52:12 (7.86 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:52:12
00:52:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:52:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:12 --2026-02-11 00:52:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:52:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:12 HTTP request sent, awaiting response... 200 OK
00:52:12 Length: 192161 (188K) [application/java-archive]
00:52:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:52:12
00:52:12 0K .......... .......... .......... .......... .......... 26% 3.43M 0s
00:52:12 50K .......... .......... .......... .......... .......... 53% 8.23M 0s
00:52:12 100K .......... .......... .......... .......... .......... 79% 4.62M 0s
00:52:13 150K .......... .......... .......... ....... 100% 10.3M=0.03s
00:52:13
00:52:13 2026-02-11 00:52:13 (5.34 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:52:13
00:52:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:52:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:13 --2026-02-11 00:52:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:52:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:13 HTTP request sent, awaiting response... 200 OK
00:52:13 Length: 1037104 (1013K) [application/java-archive]
00:52:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:52:13
00:52:13 0K .......... .......... .......... .......... .......... 4% 3.47M 0s
00:52:13 50K .......... .......... .......... .......... .......... 9% 8.42M 0s
00:52:13 100K .......... .......... .......... .......... .......... 14% 4.54M 0s
00:52:13 150K .......... .......... .......... .......... .......... 19% 10.6M 0s
00:52:13 200K .......... .......... .......... .......... .......... 24% 13.1M 0s
00:52:13 250K .......... .......... .......... .......... .......... 29% 11.1M 0s
00:52:13 300K .......... .......... .......... .......... .......... 34% 16.0M 0s
00:52:13 350K .......... .......... .......... .......... .......... 39% 17.7M 0s
00:52:13 400K .......... .......... .......... .......... .......... 44% 19.2M 0s
00:52:13 450K .......... .......... .......... .......... .......... 49% 24.3M 0s
00:52:13 500K .......... .......... .......... .......... .......... 54% 14.5M 0s
00:52:13 550K .......... .......... .......... .......... .......... 59% 12.4M 0s
00:52:13 600K .......... .......... .......... .......... .......... 64% 26.1M 0s
00:52:13 650K .......... .......... .......... .......... .......... 69% 13.3M 0s
00:52:13 700K .......... .......... .......... .......... .......... 74% 51.3M 0s
00:52:13 750K .......... .......... .......... .......... .......... 78% 12.0M 0s
00:52:13 800K .......... .......... .......... .......... .......... 83% 16.3M 0s
00:52:13 850K .......... .......... .......... .......... .......... 88% 21.2M 0s
00:52:13 900K .......... .......... .......... .......... .......... 93% 14.5M 0s
00:52:13 950K .......... .......... .......... .......... .......... 98% 42.5M 0s
00:52:13 1000K .......... .. 100% 292M=0.08s
00:52:13
00:52:13 2026-02-11 00:52:13 (12.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:52:13
00:52:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:52:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:13 --2026-02-11 00:52:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:52:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:13 HTTP request sent, awaiting response... 200 OK
00:52:13 Length: 33040 (32K) [application/java-archive]
00:52:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:52:13
00:52:13 0K .......... .......... .......... .. 100% 32.5M=0.001s
00:52:13
00:52:13 2026-02-11 00:52:13 (32.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:52:13
00:52:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:52:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:13 --2026-02-11 00:52:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:52:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:13 HTTP request sent, awaiting response... 200 OK
00:52:13 Length: 13758 (13K) [application/java-archive]
00:52:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:52:13
00:52:13 0K .......... ... 100% 69.8M=0s
00:52:13
00:52:13 2026-02-11 00:52:13 (69.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:52:13
00:52:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:52:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:13 --2026-02-11 00:52:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:52:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:14 HTTP request sent, awaiting response... 200 OK
00:52:14 Length: 962220 (940K) [application/java-archive]
00:52:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:52:14
00:52:14 0K .......... .......... .......... .......... .......... 5% 31.7M 0s
00:52:14 50K .......... .......... .......... .......... .......... 10% 3.35M 0s
00:52:14 100K .......... .......... .......... .......... .......... 15% 3.58M 0s
00:52:14 150K .......... .......... .......... .......... .......... 21% 70.1M 0s
00:52:14 200K .......... .......... .......... .......... .......... 26% 62.9M 0s
00:52:14 250K .......... .......... .......... .......... .......... 31% 87.1M 0s
00:52:14 300K .......... .......... .......... .......... .......... 37% 68.5M 0s
00:52:14 350K .......... .......... .......... .......... .......... 42% 4.47M 0s
00:52:14 400K .......... .......... .......... .......... .......... 47% 70.5M 0s
00:52:14 450K .......... .......... .......... .......... .......... 53% 46.3M 0s
00:52:14 500K .......... .......... .......... .......... .......... 58% 104M 0s
00:52:14 550K .......... .......... .......... .......... .......... 63% 72.4M 0s
00:52:14 600K .......... .......... .......... .......... .......... 69% 4.25M 0s
00:52:14 650K .......... .......... .......... .......... .......... 74% 57.1M 0s
00:52:14 700K .......... .......... .......... .......... .......... 79% 222M 0s
00:52:14 750K .......... .......... .......... .......... .......... 85% 126M 0s
00:52:14 800K .......... .......... .......... .......... .......... 90% 66.9M 0s
00:52:14 850K .......... .......... .......... .......... .......... 95% 4.20M 0s
00:52:14 900K .......... .......... .......... ......... 100% 233M=0.07s
00:52:14
00:52:14 2026-02-11 00:52:14 (12.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:52:14
00:52:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:52:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:14 --2026-02-11 00:52:14-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:52:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:14 HTTP request sent, awaiting response... 200 OK
00:52:14 Length: 30963 (30K) [application/java-archive]
00:52:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:52:14
00:52:14 0K .......... .......... .......... 100% 34.0M=0.001s
00:52:14
00:52:14 2026-02-11 00:52:14 (34.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:52:14
00:52:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:52:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:14 --2026-02-11 00:52:14-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:52:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:14 HTTP request sent, awaiting response... 200 OK
00:52:14 Length: 241618 (236K) [application/java-archive]
00:52:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:52:14
00:52:14 0K .......... .......... .......... .......... .......... 21% 35.1M 0s
00:52:14 50K .......... .......... .......... .......... .......... 42% 3.58M 0s
00:52:14 100K .......... .......... .......... .......... .......... 63% 3.91M 0s
00:52:14 150K .......... .......... .......... .......... .......... 84% 36.9M 0s
00:52:14 200K .......... .......... .......... ..... 100% 178M=0.03s
00:52:14
00:52:14 2026-02-11 00:52:14 (7.94 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:52:14
00:52:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:52:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:14 --2026-02-11 00:52:14-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:52:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:14 HTTP request sent, awaiting response... 200 OK
00:52:15 Length: 91685 (90K) [application/java-archive]
00:52:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:52:15
00:52:15 0K .......... .......... .......... .......... .......... 55% 32.6M 0s
00:52:15 50K .......... .......... .......... ......... 100% 2.83M=0.02s
00:52:15
00:52:15 2026-02-11 00:52:15 (5.78 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:52:15
00:52:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:52:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:15 --2026-02-11 00:52:15-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:52:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:15 HTTP request sent, awaiting response... 200 OK
00:52:15 Length: 66309 (65K) [application/java-archive]
00:52:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:52:15
00:52:15 0K .......... .......... .......... .......... .......... 77% 34.7M 0s
00:52:15 50K .......... .... 100% 195M=0.001s
00:52:15
00:52:15 2026-02-11 00:52:15 (42.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:52:15
00:52:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:52:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:15 --2026-02-11 00:52:15-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:52:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:15 HTTP request sent, awaiting response... 200 OK
00:52:15 Length: 593063 (579K) [application/java-archive]
00:52:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:52:15
00:52:15 0K .......... .......... .......... .......... .......... 8% 32.2M 0s
00:52:15 50K .......... .......... .......... .......... .......... 17% 3.58M 0s
00:52:15 100K .......... .......... .......... .......... .......... 25% 90.7M 0s
00:52:15 150K .......... .......... .......... .......... .......... 34% 3.78M 0s
00:52:15 200K .......... .......... .......... .......... .......... 43% 115M 0s
00:52:15 250K .......... .......... .......... .......... .......... 51% 124M 0s
00:52:15 300K .......... .......... .......... .......... .......... 60% 57.2M 0s
00:52:15 350K .......... .......... .......... .......... .......... 69% 59.6M 0s
00:52:15 400K .......... .......... .......... .......... .......... 77% 4.35M 0s
00:52:15 450K .......... .......... .......... .......... .......... 86% 67.3M 0s
00:52:15 500K .......... .......... .......... .......... .......... 94% 317M 0s
00:52:15 550K .......... .......... ......... 100% 40.8M=0.04s
00:52:15
00:52:15 2026-02-11 00:52:15 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:52:15
00:52:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:52:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:15 --2026-02-11 00:52:15-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:52:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:15 HTTP request sent, awaiting response... 200 OK
00:52:15 Length: 1688471 (1.6M) [application/java-archive]
00:52:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:52:15
00:52:15 0K .......... .......... .......... .......... .......... 3% 31.3M 0s
00:52:15 50K .......... .......... .......... .......... .......... 6% 3.50M 0s
00:52:15 100K .......... .......... .......... .......... .......... 9% 4.06M 0s
00:52:15 150K .......... .......... .......... .......... .......... 12% 41.4M 0s
00:52:15 200K .......... .......... .......... .......... .......... 15% 113M 0s
00:52:15 250K .......... .......... .......... .......... .......... 18% 62.4M 0s
00:52:15 300K .......... .......... .......... .......... .......... 21% 4.40M 0s
00:52:15 350K .......... .......... .......... .......... .......... 24% 61.0M 0s
00:52:15 400K .......... .......... .......... .......... .......... 27% 82.3M 0s
00:52:15 450K .......... .......... .......... .......... .......... 30% 81.1M 0s
00:52:15 500K .......... .......... .......... .......... .......... 33% 54.9M 0s
00:52:15 550K .......... .......... .......... .......... .......... 36% 4.51M 0s
00:52:15 600K .......... .......... .......... .......... .......... 39% 38.5M 0s
00:52:15 650K .......... .......... .......... .......... .......... 42% 213M 0s
00:52:15 700K .......... .......... .......... .......... .......... 45% 99.9M 0s
00:52:15 750K .......... .......... .......... .......... .......... 48% 52.8M 0s
00:52:15 800K .......... .......... .......... .......... .......... 51% 4.51M 0s
00:52:15 850K .......... .......... .......... .......... .......... 54% 218M 0s
00:52:15 900K .......... .......... .......... .......... .......... 57% 44.2M 0s
00:52:15 950K .......... .......... .......... .......... .......... 60% 67.5M 0s
00:52:15 1000K .......... .......... .......... .......... .......... 63% 61.8M 0s
00:52:15 1050K .......... .......... .......... .......... .......... 66% 4.54M 0s
00:52:15 1100K .......... .......... .......... .......... .......... 69% 277M 0s
00:52:15 1150K .......... .......... .......... .......... .......... 72% 36.0M 0s
00:52:15 1200K .......... .......... .......... .......... .......... 75% 77.9M 0s
00:52:15 1250K .......... .......... .......... .......... .......... 78% 59.3M 0s
00:52:15 1300K .......... .......... .......... .......... .......... 81% 4.54M 0s
00:52:15 1350K .......... .......... .......... .......... .......... 84% 155M 0s
00:52:15 1400K .......... .......... .......... .......... .......... 87% 40.9M 0s
00:52:15 1450K .......... .......... .......... .......... .......... 90% 71.5M 0s
00:52:15 1500K .......... .......... .......... .......... .......... 94% 77.3M 0s
00:52:15 1550K .......... .......... .......... .......... .......... 97% 28.1M 0s
00:52:15 1600K .......... .......... .......... .......... ........ 100% 4.70M=0.1s
00:52:15
00:52:15 2026-02-11 00:52:15 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:52:15
00:52:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:52:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:15 --2026-02-11 00:52:15-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:52:16 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:16 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:16 HTTP request sent, awaiting response... 200 OK
00:52:16 Length: 36400 (36K) [application/java-archive]
00:52:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:52:16
00:52:16 0K .......... .......... .......... ..... 100% 37.5M=0.001s
00:52:16
00:52:16 2026-02-11 00:52:16 (37.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:52:16
00:52:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:52:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:16 --2026-02-11 00:52:16-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:52:16 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:16 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:16 HTTP request sent, awaiting response... 200 OK
00:52:16 Length: 79195 (77K) [application/java-archive]
00:52:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:52:16
00:52:16 0K .......... .......... .......... .......... .......... 64% 3.52M 0s
00:52:16 50K .......... .......... ....... 100% 7.63M=0.02s
00:52:16
00:52:16 2026-02-11 00:52:16 (4.35 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:52:16
00:52:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:52:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:16 --2026-02-11 00:52:16-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:52:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:52:16 HTTP request sent, awaiting response... 200 OK
00:52:16 Length: 277829 (271K) [application/java-archive]
00:52:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:52:16
00:52:16 0K .......... .......... .......... .......... .......... 18% 3.50M 0s
00:52:16 50K .......... .......... .......... .......... .......... 36% 7.63M 0s
00:52:16 100K .......... .......... .......... .......... .......... 55% 5.11M 0s
00:52:16 150K .......... .......... .......... .......... .......... 73% 10.9M 0s
00:52:16 200K .......... .......... .......... .......... .......... 92% 9.23M 0s
00:52:16 250K .......... .......... . 100% 22.8M=0.04s
00:52:16
00:52:16 2026-02-11 00:52:16 (6.53 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:52:16
00:52:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:52:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:16 --2026-02-11 00:52:16-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:52:17 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:17 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:52:17 HTTP request sent, awaiting response... 200 OK
00:52:17 Length: 579673 (566K) [application/java-archive]
00:52:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:52:17
00:52:17 0K .......... .......... .......... .......... .......... 8% 31.7M 0s
00:52:17 50K .......... .......... .......... .......... .......... 17% 3.52M 0s
00:52:17 100K .......... .......... .......... .......... .......... 26% 3.67M 0s
00:52:17 150K .......... .......... .......... .......... .......... 35% 87.0M 0s
00:52:17 200K .......... .......... .......... .......... .......... 44% 242M 0s
00:52:17 250K .......... .......... .......... .......... .......... 52% 38.5M 0s
00:52:17 300K .......... .......... .......... .......... .......... 61% 59.6M 0s
00:52:17 350K .......... .......... .......... .......... .......... 70% 4.43M 0s
00:52:17 400K .......... .......... .......... .......... .......... 79% 84.4M 0s
00:52:17 450K .......... .......... .......... .......... .......... 88% 57.5M 0s
00:52:17 500K .......... .......... .......... .......... .......... 97% 105M 0s
00:52:17 550K .......... ...... 100% 302M=0.04s
00:52:17
00:52:17 2026-02-11 00:52:17 (12.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:52:17
00:52:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:52:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:17 --2026-02-11 00:52:17-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:52:17 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:17 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:52:17 HTTP request sent, awaiting response... 200 OK
00:52:17 Length: 175836 (172K) [application/java-archive]
00:52:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:52:17
00:52:17 0K .......... .......... .......... .......... .......... 29% 34.7M 0s
00:52:17 50K .......... .......... .......... .......... .......... 58% 3.57M 0s
00:52:17 100K .......... .......... .......... .......... .......... 87% 3.94M 0s
00:52:17 150K .......... .......... . 100% 20.7M=0.03s
00:52:17
00:52:17 2026-02-11 00:52:17 (5.88 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:52:17
00:52:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:52:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:17 --2026-02-11 00:52:17-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:52:17 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:17 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:52:17 HTTP request sent, awaiting response... 200 OK
00:52:17 Length: 889211 (868K) [application/java-archive]
00:52:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:52:17
00:52:17 0K .......... .......... .......... .......... .......... 5% 35.0M 0s
00:52:17 50K .......... .......... .......... .......... .......... 11% 3.47M 0s
00:52:17 100K .......... .......... .......... .......... .......... 17% 4.10M 0s
00:52:17 150K .......... .......... .......... .......... .......... 23% 35.6M 0s
00:52:17 200K .......... .......... .......... .......... .......... 28% 210M 0s
00:52:17 250K .......... .......... .......... .......... .......... 34% 51.2M 0s
00:52:17 300K .......... .......... .......... .......... .......... 40% 307M 0s
00:52:17 350K .......... .......... .......... .......... .......... 46% 4.46M 0s
00:52:17 400K .......... .......... .......... .......... .......... 51% 34.8M 0s
00:52:17 450K .......... .......... .......... .......... .......... 57% 154M 0s
00:52:17 500K .......... .......... .......... .......... .......... 63% 50.6M 0s
00:52:17 550K .......... .......... .......... .......... .......... 69% 336M 0s
00:52:17 600K .......... .......... .......... .......... .......... 74% 59.0M 0s
00:52:17 650K .......... .......... .......... .......... .......... 80% 4.16M 0s
00:52:17 700K .......... .......... .......... .......... .......... 86% 336M 0s
00:52:17 750K .......... .......... .......... .......... .......... 92% 56.3M 0s
00:52:17 800K .......... .......... .......... .......... .......... 97% 286M 0s
00:52:17 850K .......... ........ 100% 24.0M=0.06s
00:52:17
00:52:17 2026-02-11 00:52:17 (14.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:52:17
00:52:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:52:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:17 --2026-02-11 00:52:17-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:52:17 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:18 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:52:18 HTTP request sent, awaiting response... 200 OK
00:52:18 Length: 736051 (719K) [application/java-archive]
00:52:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:52:18
00:52:18 0K .......... .......... .......... .......... .......... 6% 35.0M 0s
00:52:18 50K .......... .......... .......... .......... .......... 13% 3.52M 0s
00:52:18 100K .......... .......... .......... .......... .......... 20% 3.91M 0s
00:52:18 150K .......... .......... .......... .......... .......... 27% 34.3M 0s
00:52:18 200K .......... .......... .......... .......... .......... 34% 300M 0s
00:52:18 250K .......... .......... .......... .......... .......... 41% 59.3M 0s
00:52:18 300K .......... .......... .......... .......... .......... 48% 52.7M 0s
00:52:18 350K .......... .......... .......... .......... .......... 55% 4.67M 0s
00:52:18 400K .......... .......... .......... .......... .......... 62% 31.0M 0s
00:52:18 450K .......... .......... .......... .......... .......... 69% 56.4M 0s
00:52:18 500K .......... .......... .......... .......... .......... 76% 271M 0s
00:52:18 550K .......... .......... .......... .......... .......... 83% 54.8M 0s
00:52:18 600K .......... .......... .......... .......... .......... 90% 4.74M 0s
00:52:18 650K .......... .......... .......... .......... .......... 97% 21.2M 0s
00:52:18 700K .......... ........ 100% 270M=0.06s
00:52:18
00:52:18 2026-02-11 00:52:18 (12.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:52:18
00:52:18 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:52:18 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:18 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:18 --2026-02-11 00:52:18-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:52:18 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:18 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:18 HTTP request sent, awaiting response... 200 OK
00:52:18 Length: 331034 (323K) [application/java-archive]
00:52:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:52:18
00:52:18 0K .......... .......... .......... .......... .......... 15% 32.1M 0s
00:52:18 50K .......... .......... .......... .......... .......... 30% 3.46M 0s
00:52:18 100K .......... .......... .......... .......... .......... 46% 3.84M 0s
00:52:18 150K .......... .......... .......... .......... .......... 61% 38.5M 0s
00:52:18 200K .......... .......... .......... .......... .......... 77% 127M 0s
00:52:18 250K .......... .......... .......... .......... .......... 92% 98.5M 0s
00:52:18 300K .......... .......... ... 100% 260M=0.03s
00:52:18
00:52:18 2026-02-11 00:52:18 (10.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:52:18
00:52:18 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:52:18 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:18 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:18 --2026-02-11 00:52:18-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:52:18 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:18 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:18 HTTP request sent, awaiting response... 200 OK
00:52:18 Length: 6749842 (6.4M) [application/java-archive]
00:52:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:52:18
00:52:18 0K .......... .......... .......... .......... .......... 0% 33.9M 0s
00:52:18 50K .......... .......... .......... .......... .......... 1% 3.55M 1s
00:52:18 100K .......... .......... .......... .......... .......... 2% 77.7M 1s
00:52:18 150K .......... .......... .......... .......... .......... 3% 3.76M 1s
00:52:18 200K .......... .......... .......... .......... .......... 3% 113M 1s
00:52:18 250K .......... .......... .......... .......... .......... 4% 92.1M 1s
00:52:18 300K .......... .......... .......... .......... .......... 5% 58.6M 1s
00:52:18 350K .......... .......... .......... .......... .......... 6% 4.66M 1s
00:52:18 400K .......... .......... .......... .......... .......... 6% 28.7M 1s
00:52:18 450K .......... .......... .......... .......... .......... 7% 82.3M 1s
00:52:18 500K .......... .......... .......... .......... .......... 8% 55.5M 0s
00:52:18 550K .......... .......... .......... .......... .......... 9% 183M 0s
00:52:18 600K .......... .......... .......... .......... .......... 9% 4.67M 1s
00:52:18 650K .......... .......... .......... .......... .......... 10% 21.8M 0s
00:52:18 700K .......... .......... .......... .......... .......... 11% 67.1M 0s
00:52:18 750K .......... .......... .......... .......... .......... 12% 138M 0s
00:52:18 800K .......... .......... .......... .......... .......... 12% 175M 0s
00:52:18 850K .......... .......... .......... .......... .......... 13% 5.04M 0s
00:52:18 900K .......... .......... .......... .......... .......... 14% 18.9M 0s
00:52:18 950K .......... .......... .......... .......... .......... 15% 285M 0s
00:52:18 1000K .......... .......... .......... .......... .......... 15% 59.7M 0s
00:52:18 1050K .......... .......... .......... .......... .......... 16% 97.9M 0s
00:52:18 1100K .......... .......... .......... .......... .......... 17% 4.83M 0s
00:52:18 1150K .......... .......... .......... .......... .......... 18% 21.9M 0s
00:52:18 1200K .......... .......... .......... .......... .......... 18% 50.5M 0s
00:52:18 1250K .......... .......... .......... .......... .......... 19% 181M 0s
00:52:18 1300K .......... .......... .......... .......... .......... 20% 91.8M 0s
00:52:18 1350K .......... .......... .......... .......... .......... 21% 5.11M 0s
00:52:18 1400K .......... .......... .......... .......... .......... 21% 19.3M 0s
00:52:18 1450K .......... .......... .......... .......... .......... 22% 17.3M 0s
00:52:18 1500K .......... .......... .......... .......... .......... 23% 17.8M 0s
00:52:18 1550K .......... .......... .......... .......... .......... 24% 24.2M 0s
00:52:18 1600K .......... .......... .......... .......... .......... 25% 13.7M 0s
00:52:18 1650K .......... .......... .......... .......... .......... 25% 30.4M 0s
00:52:18 1700K .......... .......... .......... .......... .......... 26% 13.2M 0s
00:52:18 1750K .......... .......... .......... .......... .......... 27% 13.2M 0s
00:52:18 1800K .......... .......... .......... .......... .......... 28% 25.6M 0s
00:52:18 1850K .......... .......... .......... .......... .......... 28% 17.4M 0s
00:52:18 1900K .......... .......... .......... .......... .......... 29% 19.4M 0s
00:52:18 1950K .......... .......... .......... .......... .......... 30% 17.8M 0s
00:52:18 2000K .......... .......... .......... .......... .......... 31% 25.0M 0s
00:52:18 2050K .......... .......... .......... .......... .......... 31% 13.6M 0s
00:52:18 2100K .......... .......... .......... .......... .......... 32% 15.5M 0s
00:52:18 2150K .......... .......... .......... .......... .......... 33% 21.2M 0s
00:52:18 2200K .......... .......... .......... .......... .......... 34% 18.0M 0s
00:52:18 2250K .......... .......... .......... .......... .......... 34% 23.9M 0s
00:52:18 2300K .......... .......... .......... .......... .......... 35% 13.7M 0s
00:52:18 2350K .......... .......... .......... .......... .......... 36% 16.1M 0s
00:52:18 2400K .......... .......... .......... .......... .......... 37% 35.6M 0s
00:52:18 2450K .......... .......... .......... .......... .......... 37% 13.5M 0s
00:52:18 2500K .......... .......... .......... .......... .......... 38% 23.4M 0s
00:52:18 2550K .......... .......... .......... .......... .......... 39% 13.9M 0s
00:52:18 2600K .......... .......... .......... .......... .......... 40% 15.7M 0s
00:52:18 2650K .......... .......... .......... .......... .......... 40% 23.5M 0s
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00:52:18 2750K .......... .......... .......... .......... .......... 42% 24.0M 0s
00:52:18 2800K .......... .......... .......... .......... .......... 43% 9.17M 0s
00:52:18 2850K .......... .......... .......... .......... .......... 43% 22.2M 0s
00:52:18 2900K .......... .......... .......... .......... .......... 44% 23.5M 0s
00:52:18 2950K .......... .......... .......... .......... .......... 45% 24.4M 0s
00:52:18 3000K .......... .......... .......... .......... .......... 46% 24.2M 0s
00:52:18 3050K .......... .......... .......... .......... .......... 47% 8.66M 0s
00:52:18 3100K .......... .......... .......... .......... .......... 47% 25.5M 0s
00:52:18 3150K .......... .......... .......... .......... .......... 48% 22.9M 0s
00:52:18 3200K .......... .......... .......... .......... .......... 49% 25.0M 0s
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00:52:18 3300K .......... .......... .......... .......... .......... 50% 9.35M 0s
00:52:18 3350K .......... .......... .......... .......... .......... 51% 17.8M 0s
00:52:18 3400K .......... .......... .......... .......... .......... 52% 27.1M 0s
00:52:18 3450K .......... .......... .......... .......... .......... 53% 25.9M 0s
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00:52:18 3550K .......... .......... .......... .......... .......... 54% 9.72M 0s
00:52:18 3600K .......... .......... .......... .......... .......... 55% 17.4M 0s
00:52:18 3650K .......... .......... .......... .......... .......... 56% 26.7M 0s
00:52:18 3700K .......... .......... .......... .......... .......... 56% 26.8M 0s
00:52:18 3750K .......... .......... .......... .......... .......... 57% 22.1M 0s
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00:52:18 3950K .......... .......... .......... .......... .......... 60% 25.8M 0s
00:52:18 4000K .......... .......... .......... .......... .......... 61% 23.5M 0s
00:52:18 4050K .......... .......... .......... .......... .......... 62% 21.8M 0s
00:52:18 4100K .......... .......... .......... .......... .......... 62% 8.56M 0s
00:52:18 4150K .......... .......... .......... .......... .......... 63% 34.5M 0s
00:52:18 4200K .......... .......... .......... .......... .......... 64% 14.9M 0s
00:52:18 4250K .......... .......... .......... .......... .......... 65% 34.3M 0s
00:52:19 4300K .......... .......... .......... .......... .......... 65% 11.0M 0s
00:52:19 4350K .......... .......... .......... .......... .......... 66% 15.4M 0s
00:52:19 4400K .......... .......... .......... .......... .......... 67% 23.5M 0s
00:52:19 4450K .......... .......... .......... .......... .......... 68% 16.7M 0s
00:52:19 4500K .......... .......... .......... .......... .......... 69% 27.7M 0s
00:52:19 4550K .......... .......... .......... .......... .......... 69% 13.1M 0s
00:52:19 4600K .......... .......... .......... .......... .......... 70% 15.5M 0s
00:52:19 4650K .......... .......... .......... .......... .......... 71% 22.9M 0s
00:52:19 4700K .......... .......... .......... .......... .......... 72% 29.1M 0s
00:52:19 4750K .......... .......... .......... .......... .......... 72% 23.0M 0s
00:52:19 4800K .......... .......... .......... .......... .......... 73% 21.4M 0s
00:52:19 4850K .......... .......... .......... .......... .......... 74% 8.97M 0s
00:52:19 4900K .......... .......... .......... .......... .......... 75% 19.6M 0s
00:52:19 4950K .......... .......... .......... .......... .......... 75% 18.8M 0s
00:52:19 5000K .......... .......... .......... .......... .......... 76% 34.3M 0s
00:52:19 5050K .......... .......... .......... .......... .......... 77% 27.2M 0s
00:52:19 5100K .......... .......... .......... .......... .......... 78% 9.07M 0s
00:52:19 5150K .......... .......... .......... .......... .......... 78% 22.0M 0s
00:52:19 5200K .......... .......... .......... .......... .......... 79% 31.6M 0s
00:52:19 5250K .......... .......... .......... .......... .......... 80% 14.2M 0s
00:52:19 5300K .......... .......... .......... .......... .......... 81% 15.1M 0s
00:52:19 5350K .......... .......... .......... .......... .......... 81% 12.8M 0s
00:52:19 5400K .......... .......... .......... .......... .......... 82% 29.1M 0s
00:52:19 5450K .......... .......... .......... .......... .......... 83% 31.5M 0s
00:52:19 5500K .......... .......... .......... .......... .......... 84% 14.6M 0s
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00:52:19 5600K .......... .......... .......... .......... .......... 85% 9.16M 0s
00:52:19 5650K .......... .......... .......... .......... .......... 86% 18.1M 0s
00:52:19 5700K .......... .......... .......... .......... .......... 87% 24.7M 0s
00:52:19 5750K .......... .......... .......... .......... .......... 87% 34.5M 0s
00:52:19 5800K .......... .......... .......... .......... .......... 88% 28.5M 0s
00:52:19 5850K .......... .......... .......... .......... .......... 89% 8.35M 0s
00:52:19 5900K .......... .......... .......... .......... .......... 90% 15.9M 0s
00:52:19 5950K .......... .......... .......... .......... .......... 91% 30.7M 0s
00:52:19 6000K .......... .......... .......... .......... .......... 91% 25.4M 0s
00:52:19 6050K .......... .......... .......... .......... .......... 92% 28.9M 0s
00:52:19 6100K .......... .......... .......... .......... .......... 93% 15.9M 0s
00:52:19 6150K .......... .......... .......... .......... .......... 94% 14.0M 0s
00:52:19 6200K .......... .......... .......... .......... .......... 94% 13.8M 0s
00:52:19 6250K .......... .......... .......... .......... .......... 95% 22.2M 0s
00:52:19 6300K .......... .......... .......... .......... .......... 96% 23.9M 0s
00:52:19 6350K .......... .......... .......... .......... .......... 97% 18.1M 0s
00:52:19 6400K .......... .......... .......... .......... .......... 97% 15.9M 0s
00:52:19 6450K .......... .......... .......... .......... .......... 98% 13.3M 0s
00:52:19 6500K .......... .......... .......... .......... .......... 99% 33.9M 0s
00:52:19 6550K .......... .......... .......... .......... . 100% 15.6M=0.4s
00:52:19
00:52:19 2026-02-11 00:52:19 (17.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:52:19
00:52:19 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:52:19 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:19 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:19 --2026-02-11 00:52:19-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:52:19 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:19 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:19 HTTP request sent, awaiting response... 200 OK
00:52:19 Length: 1732435 (1.7M) [application/java-archive]
00:52:19 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:52:19
00:52:19 0K .......... .......... .......... .......... .......... 2% 35.3M 0s
00:52:19 50K .......... .......... .......... .......... .......... 5% 3.41M 0s
00:52:19 100K .......... .......... .......... .......... .......... 8% 91.4M 0s
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00:52:19 200K .......... .......... .......... .......... .......... 14% 160M 0s
00:52:19 250K .......... .......... .......... .......... .......... 17% 54.2M 0s
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00:52:19 500K .......... .......... .......... .......... .......... 32% 239M 0s
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00:52:19 750K .......... .......... .......... .......... .......... 47% 47.9M 0s
00:52:19 800K .......... .......... .......... .......... .......... 50% 164M 0s
00:52:19 850K .......... .......... .......... .......... .......... 53% 79.8M 0s
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00:52:19 950K .......... .......... .......... .......... .......... 59% 108M 0s
00:52:19 1000K .......... .......... .......... .......... .......... 62% 58.4M 0s
00:52:19 1050K .......... .......... .......... .......... .......... 65% 66.8M 0s
00:52:19 1100K .......... .......... .......... .......... .......... 67% 107M 0s
00:52:19 1150K .......... .......... .......... .......... .......... 70% 4.08M 0s
00:52:19 1200K .......... .......... .......... .......... .......... 73% 125M 0s
00:52:19 1250K .......... .......... .......... .......... .......... 76% 55.0M 0s
00:52:19 1300K .......... .......... .......... .......... .......... 79% 55.7M 0s
00:52:19 1350K .......... .......... .......... .......... .......... 82% 122M 0s
00:52:19 1400K .......... .......... .......... .......... .......... 85% 4.60M 0s
00:52:19 1450K .......... .......... .......... .......... .......... 88% 13.8M 0s
00:52:19 1500K .......... .......... .......... .......... .......... 91% 18.8M 0s
00:52:19 1550K .......... .......... .......... .......... .......... 94% 18.1M 0s
00:52:19 1600K .......... .......... .......... .......... .......... 97% 18.1M 0s
00:52:19 1650K .......... .......... .......... .......... . 100% 40.2M=0.1s
00:52:19
00:52:19 2026-02-11 00:52:19 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:52:19
00:52:19 + for x in *.jar
00:52:19 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:52:19 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:52:19 ++ deactivate nondestructive
00:52:19 ++ '[' -n '' ']'
00:52:19 ++ '[' -n '' ']'
00:52:19 ++ hash -r
00:52:19 ++ '[' -n '' ']'
00:52:19 ++ unset VIRTUAL_ENV
00:52:19 ++ unset VIRTUAL_ENV_PROMPT
00:52:19 ++ '[' '!' nondestructive = nondestructive ']'
00:52:19 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:52:19 ++ export VIRTUAL_ENV
00:52:19 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:52:19 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:52:19 ++ export PATH
00:52:19 ++ '[' -n '' ']'
00:52:19 ++ '[' -z '' ']'
00:52:19 ++ _OLD_VIRTUAL_PS1=
00:52:19 ++ PS1='(.venv3) '
00:52:19 ++ export PS1
00:52:19 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:52:19 ++ export VIRTUAL_ENV_PROMPT
00:52:19 ++ hash -r
00:52:19 + pip install -U pip
00:52:19 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:52:20 Collecting pip
00:52:20 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:52:20 Installing collected packages: pip
00:52:20 Attempting uninstall: pip
00:52:20 Found existing installation: pip 22.3.1
00:52:20 Uninstalling pip-22.3.1:
00:52:20 Successfully uninstalled pip-22.3.1
00:52:21 Successfully installed pip-26.0.1
00:52:21 WARNING: There was an error checking the latest version of pip.
00:52:21 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:52:21 Collecting zeroc-ice==3.6.5
00:52:22 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:52:23 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.4 MB/s 0:00:01
00:52:23 Installing collected packages: zeroc-ice
00:52:24 Successfully installed zeroc-ice-3.6.5
00:52:24 + pip install markdown
00:52:24 Collecting markdown
00:52:24 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:52:25 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:52:25 Installing collected packages: markdown
00:52:25 Successfully installed markdown-3.10.2
00:52:25 + pip install reportlab
00:52:26 Collecting reportlab
00:52:26 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
00:52:26 Collecting pillow>=9.0.0 (from reportlab)
00:52:26 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:52:26 Collecting charset-normalizer (from reportlab)
00:52:26 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:52:26 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
00:52:26 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:52:26 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:52:26 Installing collected packages: pillow, charset-normalizer, reportlab
00:52:27
00:52:27 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
00:52:27 + pip install omego
00:52:28 Collecting omego
00:52:28 Using cached omego-0.7.0-py3-none-any.whl
00:52:28 Collecting future (from omego)
00:52:28 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:52:28 Collecting yaclifw>=0.1.1 (from omego)
00:52:28 Using cached yaclifw-0.2.0-py3-none-any.whl
00:52:28 Collecting six (from yaclifw>=0.1.1->omego)
00:52:28 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:52:28 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:52:28 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:52:28 Installing collected packages: six, future, yaclifw, omego
00:52:29
00:52:29 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:52:29 + pip install tables
00:52:29 Collecting tables
00:52:29 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:52:30 Collecting numpy>=1.20.0 (from tables)
00:52:30 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:52:30 Collecting numexpr>=2.6.2 (from tables)
00:52:30 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:52:30 Collecting packaging (from tables)
00:52:30 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:52:30 Collecting py-cpuinfo (from tables)
00:52:30 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:52:30 Collecting blosc2>=2.3.0 (from tables)
00:52:30 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:52:30 Collecting typing-extensions>=4.4.0 (from tables)
00:52:30 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:52:30 Collecting ndindex (from blosc2>=2.3.0->tables)
00:52:30 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:52:30 Collecting msgpack (from blosc2>=2.3.0->tables)
00:52:30 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:52:30 Collecting requests (from blosc2>=2.3.0->tables)
00:52:30 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:52:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:52:31 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:52:31 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:52:31 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:52:31 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:52:31 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:52:31 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:52:31 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:52:31 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:52:31 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:52:31 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:52:31 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:52:31 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:52:31 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:52:31 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:52:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:52:31 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:52:31 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:52:31 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:52:31 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:52:31 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:52:34
00:52:34 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:52:35 + pip install jinja2
00:52:35 Collecting jinja2
00:52:35 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:52:35 Collecting MarkupSafe>=2.0 (from jinja2)
00:52:35 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:52:35 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:52:35 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:52:35 Installing collected packages: MarkupSafe, jinja2
00:52:35
00:52:35 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:52:35 + pip install omero-py
00:52:36 Collecting omero-py
00:52:36 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:52:36 Collecting appdirs (from omero-py)
00:52:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:52:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:52:36 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:52:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:52:36 Collecting PyYAML (from omero-py)
00:52:36 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:52:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:52:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:52:36 Collecting portalocker (from omero-py)
00:52:36 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:52:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:52:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:52:36 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:52:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:52:36 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:52:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:52:36 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:52:36 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:52:36 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:52:39
00:52:39 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:52:39 + pip install pyarrow
00:52:41 Collecting pyarrow
00:52:41 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:52:41 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (47.5 MB)
00:52:42 Installing collected packages: pyarrow
00:52:43 Successfully installed pyarrow-23.0.0
00:52:43 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:52:43 Collecting omero-metadata
00:52:43 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-xtokgd_f/omero-metadata_e70d4c04c53c45968cad7d3a660b7f8d
00:52:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-xtokgd_f/omero-metadata_e70d4c04c53c45968cad7d3a660b7f8d
00:52:44 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 6dc0dfbc162d4270adb46134014d2aaf7df311da
00:52:44 Installing build dependencies: started
00:52:45 Installing build dependencies: finished with status 'done'
00:52:45 Getting requirements to build wheel: started
00:52:46 Getting requirements to build wheel: finished with status 'done'
00:52:46 Preparing metadata (pyproject.toml): started
00:52:46 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:46 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:52:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:52:46 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:52:46 Collecting pandas (from omero-metadata)
00:52:46 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:52:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:52:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:52:46 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:52:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:52:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:52:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:52:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:52:46 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:52:46 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:52:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:52:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:52:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:52:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:52:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:52:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:52:46 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:52:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:52:47 Building wheels for collected packages: omero-metadata
00:52:47 Building wheel for omero-metadata (pyproject.toml): started
00:52:47 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:52:47 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=0c2eb098ea5742b8e72f7d3eabace5c6816bce6afa5585ba8836a07562d3ec3a
00:52:47 Stored in directory: /tmp/pip-ephem-wheel-cache-9pk7oyrb/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:52:47 Successfully built omero-metadata
00:52:47 Installing collected packages: python-dateutil, pandas, omero-metadata
00:52:51
00:52:51 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:52:51 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:52:52 Collecting omero-cli-render
00:52:52 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-27w0ava2/omero-cli-render_ec24825e419e48de83ec96d01a520e20
00:52:52 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-27w0ava2/omero-cli-render_ec24825e419e48de83ec96d01a520e20
00:52:53 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:53 Switched to a new branch 'merge_ci'
00:52:53 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:53 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit b39c9ffdd4bc99a3577e4cefa78e0331be1c5abc
00:52:53 Installing build dependencies: started
00:52:54 Installing build dependencies: finished with status 'done'
00:52:54 Getting requirements to build wheel: started
00:52:54 Getting requirements to build wheel: finished with status 'done'
00:52:54 Preparing metadata (pyproject.toml): started
00:52:54 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:52:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:52:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:52:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:52:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:52:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:52:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:52:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:52:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:52:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:52:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:52:54 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:52:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:52:54 Building wheels for collected packages: omero-cli-render
00:52:54 Building wheel for omero-cli-render (pyproject.toml): started
00:52:55 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:52:55 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=d9a5a3769612ceaf61d825ad3bf8324da9c21e4ebc5e4764c3d184d5b568d58b
00:52:55 Stored in directory: /tmp/pip-ephem-wheel-cache-eul7nucc/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:52:55 Successfully built omero-cli-render
00:52:55 Installing collected packages: omero-cli-render
00:52:55 Successfully installed omero-cli-render-0.8.2.dev0
00:52:55 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:52:55 Collecting omero-cli-duplicate
00:52:55 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-8_or7g3s/omero-cli-duplicate_f4d6cf921afd431fa02a3b14218a5893
00:52:55 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-8_or7g3s/omero-cli-duplicate_f4d6cf921afd431fa02a3b14218a5893
00:52:56 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:56 Switched to a new branch 'merge_ci'
00:52:56 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:56 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit c0b50275413eae213b3fbef5f082969f127c8799
00:52:56 Installing build dependencies: started
00:52:57 Installing build dependencies: finished with status 'done'
00:52:57 Getting requirements to build wheel: started
00:52:57 Getting requirements to build wheel: finished with status 'done'
00:52:57 Preparing metadata (pyproject.toml): started
00:52:57 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:57 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:52:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:52:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:52:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:52:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:52:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:52:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:52:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:52:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:52:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:52:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:52:57 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:52:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:52:57 Building wheels for collected packages: omero-cli-duplicate
00:52:57 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:52:57 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:52:57 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=b44d18a6b94393f1b4dae8a056b4deb04e64fbeb0a0de40da3f290c79af13f39
00:52:57 Stored in directory: /tmp/pip-ephem-wheel-cache-my7y8zvf/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:52:57 Successfully built omero-cli-duplicate
00:52:57 Installing collected packages: omero-cli-duplicate
00:52:57 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:52:57 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:52:58 Collecting omero-cli-zarr
00:52:58 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-48481g67/omero-cli-zarr_2953a10c506e48d3a601c73058cd2263
00:52:58 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-48481g67/omero-cli-zarr_2953a10c506e48d3a601c73058cd2263
00:52:59 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:59 Switched to a new branch 'merge_ci'
00:52:59 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:59 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit ce853ba969a49a84c02756464921a8ab90c56aad
00:52:59 Installing build dependencies: started
00:53:00 Installing build dependencies: finished with status 'done'
00:53:00 Getting requirements to build wheel: started
00:53:00 Getting requirements to build wheel: finished with status 'done'
00:53:00 Installing backend dependencies: started
00:53:01 Installing backend dependencies: finished with status 'done'
00:53:01 Preparing metadata (pyproject.toml): started
00:53:01 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:01 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:53:01 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:53:01 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:53:01 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.2)
00:53:01 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:53:01 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:53:02 Collecting zarr>=3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:53:02 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:53:02 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:02 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:53:02 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:53:02 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:53:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:53:03 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:53:03 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:53:03 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:53:03 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:53:03 Collecting rangehttpserver (from ome-zarr>=0.12.0->omero-cli-zarr)
00:53:03 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:53:03 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:03 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:53:03 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:03 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:53:03 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:53:03 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:03 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
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00:53:04 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:04 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:53:04 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:04 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:53:04 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:04 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:53:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:53:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:53:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
00:53:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:53:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:53:04 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:04 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:53:04 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:04 Using cached aiobotocore-3.1.2-py3-none-any.whl.metadata (26 kB)
00:53:04 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:04 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:53:05 Collecting botocore<1.42.43,>=1.41.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:05 Using cached botocore-1.42.42-py3-none-any.whl.metadata (5.9 kB)
00:53:05 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:53:05 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:05 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:53:05 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:05 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:53:06 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:06 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:53:06 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:06 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:53:06 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:06 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:53:06 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:06 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:53:06 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:06 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:53:06 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:06 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:53:07 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:07 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:53:07 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.43,>=1.41.0->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:53:07 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:53:07 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:53:07 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:53:07 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:07 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:53:07 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:07 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:53:07 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:07 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:53:07 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:07 Using cached tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
00:53:07 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:07 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:53:08 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:08 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:53:08 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:08 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:53:08 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:53:08 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:53:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:53:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:53:08 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:53:08 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:53:08 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:53:08 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:53:08 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:53:08 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:53:08 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:53:09 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:53:09 Using cached aiobotocore-3.1.2-py3-none-any.whl (87 kB)
00:53:09 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:53:09 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:53:09 Using cached botocore-1.42.42-py3-none-any.whl (14.6 MB)
00:53:09 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:53:09 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:53:09 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:53:09 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:53:09 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:53:09 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:53:09 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:53:09 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:53:09 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:53:09 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:53:09 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:53:10 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:53:10 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:53:10 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:53:10 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
00:53:10 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:53:10 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:53:10 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:53:10 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:53:10 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:53:10 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:53:10 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:53:10 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:53:10 Building wheels for collected packages: omero-cli-zarr
00:53:10 Building wheel for omero-cli-zarr (pyproject.toml): started
00:53:11 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:53:11 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev152+gce853ba-py3-none-any.whl size=38159 sha256=96161a2ec0a10006c1f019e1051189e3e062a90e71ee534e6eed0a9352439c6a
00:53:11 Stored in directory: /tmp/pip-ephem-wheel-cache-axbxejpi/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:53:11 Successfully built omero-cli-zarr
00:53:11 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:53:20
00:53:20 Successfully installed aiobotocore-3.1.2 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.42 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev152+gce853ba partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:53:20 + pip install omero-certificates
00:53:21 Collecting omero-certificates
00:53:21 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:53:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:53:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:53:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:53:21 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:53:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:53:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:53:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:53:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:53:21 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:53:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:53:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:53:21 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:53:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:53:21 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:53:21 Installing collected packages: omero-certificates
00:53:21 Successfully installed omero-certificates-0.4.0
00:53:21 + for x in *.tar.gz
00:53:21 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:53:21 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:53:21 Installing build dependencies: started
00:53:22 Installing build dependencies: finished with status 'done'
00:53:22 Getting requirements to build wheel: started
00:53:22 Getting requirements to build wheel: finished with status 'done'
00:53:22 Preparing metadata (pyproject.toml): started
00:53:22 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:22 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:53:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:53:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:53:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:53:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:53:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:53:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:53:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:53:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:53:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:53:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:53:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:53:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:53:22 Building wheels for collected packages: omero-dropbox
00:53:22 Building wheel for omero-dropbox (pyproject.toml): started
00:53:23 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:53:23 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=60b45fee98ea4d95503d9ce041aa49caa31dd142c69f1207a9e1e806538c1591
00:53:23 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:53:23 Successfully built omero-dropbox
00:53:23 Installing collected packages: omero-dropbox
00:53:23 Successfully installed omero-dropbox-5.7.1.dev0
00:53:23 + for x in *.tar.gz
00:53:23 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:53:23 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:53:23 Installing build dependencies: started
00:53:24 Installing build dependencies: finished with status 'done'
00:53:24 Getting requirements to build wheel: started
00:53:24 Getting requirements to build wheel: finished with status 'done'
00:53:24 Preparing metadata (pyproject.toml): started
00:53:25 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:25 Building wheels for collected packages: omero_marshal
00:53:25 Building wheel for omero_marshal (pyproject.toml): started
00:53:25 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:53:25 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=30b0fdc216964a7f88c5cb0461f899db2f926112644fcca0e78272e88f28ed11
00:53:25 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:53:25 Successfully built omero_marshal
00:53:25 Installing collected packages: omero_marshal
00:53:25 Successfully installed omero_marshal-0.9.2.dev0
00:53:25 + for x in *.tar.gz
00:53:25 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:53:25 Processing ./omero_py-5.22.1.dev0.tar.gz
00:53:26 Installing build dependencies: started
00:53:27 Installing build dependencies: finished with status 'done'
00:53:27 Getting requirements to build wheel: started
00:53:28 Getting requirements to build wheel: finished with status 'done'
00:53:28 Preparing metadata (pyproject.toml): started
00:53:28 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:53:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:53:28 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:53:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.0)
00:53:28 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:53:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:53:28 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:53:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:53:28 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:53:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:53:28 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:53:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.1.4)
00:53:28 Building wheels for collected packages: omero-py
00:53:28 Building wheel for omero-py (pyproject.toml): started
00:53:29 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:53:29 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786544 sha256=d23f6307fd4c52b14cf790d59baa14431fd57a02da158a3e4c47c1e86fd9392d
00:53:29 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:53:29 Successfully built omero-py
00:53:29 Installing collected packages: omero-py
00:53:29 Attempting uninstall: omero-py
00:53:29 Found existing installation: omero-py 5.22.0
00:53:29 Uninstalling omero-py-5.22.0:
00:53:29 Successfully uninstalled omero-py-5.22.0
00:53:31 Successfully installed omero-py-5.22.1.dev0
00:53:31 + for x in *.tar.gz
00:53:31 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:53:32 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:53:32 Installing build dependencies: started
00:53:34 Installing build dependencies: finished with status 'done'
00:53:34 Getting requirements to build wheel: started
00:53:34 Getting requirements to build wheel: finished with status 'done'
00:53:34 Preparing metadata (pyproject.toml): started
00:53:35 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:35 Building wheels for collected packages: omero-scripts
00:53:35 Building wheel for omero-scripts (pyproject.toml): started
00:53:35 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:53:35 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=bd91cfd1b5016b60a06ec56a7a9b28e39eeb95420286a798cca3feb0c66fc0ef
00:53:35 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:53:35 Successfully built omero-scripts
00:53:35 Installing collected packages: omero-scripts
00:53:35 Successfully installed omero-scripts-5.10.1.dev0
00:53:35 + for x in *.tar.gz
00:53:35 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:53:36 Processing ./omero_web-5.30.2.dev0.tar.gz
00:53:36 Installing build dependencies: started
00:53:37 Installing build dependencies: finished with status 'done'
00:53:37 Getting requirements to build wheel: started
00:53:37 Getting requirements to build wheel: finished with status 'done'
00:53:37 Preparing metadata (pyproject.toml): started
00:53:37 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:37 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.1.dev0)
00:53:37 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:53:37 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:53:37 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:53:37 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:53:38 Collecting django-pipeline>=4.1.0 (from omero-web==5.30.2.dev0)
00:53:38 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:53:38 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:53:38 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:53:38 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:53:38 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:53:38 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:53:38 Using cached gunicorn-25.0.3-py3-none-any.whl.metadata (5.5 kB)
00:53:38 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:53:38 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:53:38 Collecting pytz (from omero-web==5.30.2.dev0)
00:53:38 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:53:38 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:53:38 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:53:38 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:53:38 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:53:38 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:53:38 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:53:38 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:53:38 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:53:38 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.30.2.dev0) (65.5.1)
00:53:38 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.30.2.dev0)
00:53:38 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:53:38 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:53:38 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:53:38 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.2)
00:53:38 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:53:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:53:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:53:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:53:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:53:38 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:53:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:53:38 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:53:38 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:53:39 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:53:39 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:53:39 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:53:39 Using cached gunicorn-25.0.3-py3-none-any.whl (171 kB)
00:53:39 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:53:39 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:53:39 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:53:39 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:53:39 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:53:39 Building wheels for collected packages: omero-web
00:53:39 Building wheel for omero-web (pyproject.toml): started
00:53:40 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:53:40 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819268 sha256=60a137d7b114a68b7cc64dc58ae9e1e816ed6b70880c63134dc7912ee9295c18
00:53:40 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:53:40 Successfully built omero-web
00:53:40 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:53:43
00:53:43 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.0.3 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:53:43 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:53:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:43 --2026-02-11 00:53:43-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:53:43 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ...
00:53:43 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:53:43 HTTP request sent, awaiting response... 200 OK
00:53:43 Length: 137709 (134K) [text/plain]
00:53:43 Saving to: ‘Figure_To_Pdf.py’
00:53:43
00:53:43 0K .......... .......... .......... .......... .......... 37% 3.93M 0s
00:53:43 50K .......... .......... .......... .......... .......... 74% 5.88M 0s
00:53:43 100K .......... .......... .......... .... 100% 89.3M=0.02s
00:53:43
00:53:43 2026-02-11 00:53:43 (6.22 MB/s) - ‘Figure_To_Pdf.py’ saved [137709/137709]
00:53:43
00:53:43 + chmod 755 Figure_To_Pdf.py
00:53:43 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:53:43 + omero config set omero.db.name OMERO-server
00:53:45 + omero config set omero.db.host pg
00:53:47 + omero config set omero.db.user postgres
00:53:49 + omero config set omero.data.dir /home/omero/omero-server-data
00:53:51 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:53:53 + omero config set omero.db.poolsize 25
00:53:55 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:53:57 + omero config set omero.security.trustStorePassword changeit
00:53:59 + omero config set omero.mail.config true
00:54:01 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:54:03 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:54:05 + omero certificates
00:54:07 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:54:07 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:54:07 + '[' false = true ']'
00:54:07 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:54:07 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:54:07 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:54:07 2026-02-11 00:54:07,781 [ omego.db] DEBUG dbcommand => upgrade
00:54:07 2026-02-11 00:54:07,781 [ omego.db] DEBUG dbhost => localhost
00:54:07 2026-02-11 00:54:07,781 [ omego.db] DEBUG dbname => OMERO-server
00:54:07 2026-02-11 00:54:07,782 [ omego.db] DEBUG dbpass => omero
00:54:07 2026-02-11 00:54:07,782 [ omego.db] DEBUG dbuser => omero
00:54:07 2026-02-11 00:54:07,782 [ omego.db] DEBUG rootpass => omero
00:54:07 2026-02-11 00:54:07,782 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:54:07 2026-02-11 00:54:07,782 [omego.extern] INFO Executing : omero version
00:54:09 OMERO.py version:
00:54:09 OMERO.server version:
00:54:09 5.6.3-593-6c88b4e1e5-ice36-b50
00:54:09 5.22.1.dev0
00:54:09 2026-02-11 00:54:09,843 [omego.extern] INFO Completed [2.061 s]
00:54:09 2026-02-11 00:54:09,843 [omego.extern] DEBUG Using omero CLI from omero
00:54:09 2026-02-11 00:54:09,843 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:54:09 2026-02-11 00:54:09,843 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:09 2026-02-11 00:54:09,843 [omego.extern] INFO Executing : omero config get --show-password
00:54:11 2026-02-11 00:54:11,859 [omego.extern] INFO Completed [2.016 s]
00:54:11 2026-02-11 00:54:11,859 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:54:11 2026-02-11 00:54:11,859 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:54:12 2026-02-11 00:54:12,308 [omego.extern] INFO Completed [0.449 s]
00:54:12 2026-02-11 00:54:12,308 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:54:12 2026-02-11 00:54:12,308 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:54:12
00:54:12 2026-02-11 00:54:12,308 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:12 2026-02-11 00:54:12,308 [omego.extern] INFO Executing : omero config get --show-password
00:54:14 2026-02-11 00:54:14,305 [omego.extern] INFO Completed [1.997 s]
00:54:14 2026-02-11 00:54:14,305 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:54:14 2026-02-11 00:54:14,305 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:54:14 2026-02-11 00:54:14,528 [omego.extern] INFO Completed [0.223 s]
00:54:14 2026-02-11 00:54:14,528 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n'
00:54:14 2026-02-11 00:54:14,528 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:54:14 2026-02-11 00:54:14,528 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:14 2026-02-11 00:54:14,528 [omego.extern] INFO Executing : omero config get --show-password
00:54:16 2026-02-11 00:54:16,525 [omego.extern] INFO Completed [1.997 s]
00:54:16 2026-02-11 00:54:16,525 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:54:16 2026-02-11 00:54:16,526 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:54:17 2026-02-11 00:54:17,428 [omego.extern] INFO Completed [0.903 s]
00:54:17 2026-02-11 00:54:17,429 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:54:17 2026-02-11 00:54:17,429 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:54:17 2026-02-11 00:54:17,430 [ omego.db] INFO Database is already at OMERO5.4__0
00:54:17 + export LANG=en_US.UTF-8
00:54:17 + LANG=en_US.UTF-8
00:54:17 + export LANGUAGE=en_US:en
00:54:17 + LANGUAGE=en_US:en
00:54:17 + export LC_ALL=en_US.UTF-8
00:54:17 + LC_ALL=en_US.UTF-8
00:54:17 + BUILD_ID=DONT_KILL_ME
00:54:17 + omero admin start
00:54:23 No descriptor given. Using etc/grid/default.xml
00:54:34 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:54:34 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:54:34 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:54:34 Waiting on startup. Use CTRL-C to exit
00:54:34 + omero admin waitup
00:54:36 Waiting on startup. Use CTRL-C to exit
00:54:36 + omero admin diagnostics
00:54:38
00:54:38 ================================================================================
00:54:38 OMERO Diagnostics (admin)
00:54:38 ================================================================================
00:54:38
00:54:38 Commands: java -version 17.0.17 (/usr/bin/java)
00:54:38 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:54:38 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:54:38 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:54:38 Commands: psql --version 16.11 (/usr/bin/psql)
00:54:38 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:54:38
00:54:38 Component: OMERO.py 5.22.1.dev0
00:54:38 Component: OMERO.server 5.6.3-593-6c88b4e1e5-ice36-b50
00:54:38
00:54:38 Server: icegridnode running
00:54:38 Server: Blitz-0 active (pid = 3352, enabled)
00:54:38 Server: Indexer-0 activating (enabled)
00:54:38 Server: OMERO.Glacier2 active (pid = 3387, enabled)
00:54:38 Server: OMERO.IceStorm active (pid = 3418, enabled)
00:54:38 Server: Processor-0 activating (enabled)
00:54:38 Server: Tables-0 activating (enabled)
00:54:38
00:54:38 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:54:38 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
00:54:38 Log files: DropBox.log n/a
00:54:38 Log files: FileServer.log n/a
00:54:38 Log files: Indexer-0.log 2.1 KB
00:54:38 Log files: MonitorServer.log n/a
00:54:38 Log files: Processor-0.log 592 B
00:54:38 Log files: Tables-0.log 841 B
00:54:38 Log files: TestDropBox.log n/a
00:54:38 Log files: master.err empty
00:54:38 Log files: master.out 30.1 KB
00:54:38 Log files: Total size 0.06 MB
00:54:38
00:54:38
00:54:38 Environment:OMERO_HOME=(unset)
00:54:38 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:54:38 Environment:OMERO_NODE=(unset)
00:54:38 Environment:OMERO_MASTER=(unset)
00:54:38 Environment:OMERO_USERDIR=(unset)
00:54:38 Environment:OMERO_TMPDIR=(unset)
00:54:38 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:54:38 Environment:PYTHONPATH=(unset)
00:54:38 Environment:ICE_HOME=/opt/ice-3.6.5
00:54:38 Environment:LD_LIBRARY_PATH=(unset)
00:54:38 Environment:DYLD_LIBRARY_PATH=(unset)
00:54:38
00:54:38 OMERO SSL port:4064
00:54:38 OMERO TCP port:4063
00:54:38 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:54:38 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:54:38
00:54:38 JVM settings: Blitz-${index} -Xmx7200m
00:54:38 JVM settings: Indexer-${index} -Xmx4800m
00:54:38 JVM settings: PixelData-${index} -Xmx7200m
00:54:38 JVM settings: Repository-${index} -Xmx4800m
00:54:38
00:54:38 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 11 February 2026 6b790f7f720c629f1703f071e3820aff53ffbc3e
00:54:38 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 11 February 2026 6b790f7f720c629f1703f071e3820aff53ffbc3e
00:54:38 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 11 February 2026 6b790f7f720c629f1703f071e3820aff53ffbc3e
00:54:38 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 11 February 2026 61f3fa20ea9725046d0e1f9c94aba5405687a758
00:54:38 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 11 February 2026 61f3fa20ea9725046d0e1f9c94aba5405687a758
00:54:38 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 11 February 2026 61f3fa20ea9725046d0e1f9c94aba5405687a758
00:54:38 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 11 February 2026 61f3fa20ea9725046d0e1f9c94aba5405687a758
00:54:38 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 11 February 2026 61f3fa20ea9725046d0e1f9c94aba5405687a758
00:54:38 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 11 February 2026 61f3fa20ea9725046d0e1f9c94aba5405687a758
00:54:38 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:54:38 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:54:38 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:54:38 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:54:38 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:54:38 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:54:38 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:54:38 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT e7e31d51c87ea1d78d6bead7023a8a3b2dde3a2f
00:54:39 + deactivate
00:54:39 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:54:39 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:54:39 + export PATH
00:54:39 + unset _OLD_VIRTUAL_PATH
00:54:39 + '[' -n '' ']'
00:54:39 + hash -r
00:54:39 + '[' -n '' ']'
00:54:39 + unset VIRTUAL_ENV
00:54:39 + unset VIRTUAL_ENV_PROMPT
00:54:39 + '[' '!' '' = nondestructive ']'
00:54:39 + unset -f deactivate
00:54:39 Finished: SUCCESS
