00:44:34 Started by upstream project "Trigger" build number 10
00:44:34 originally caused by:
00:44:34 Started by timer
00:44:34 Running as SYSTEM
00:44:34 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:44:34 [OMERO-server] $ /bin/bash -xe /tmp/jenkins780993598238152281.sh
00:44:34 + source /home/settings.env
00:44:34 ++ OMERO_DB_HOST=pg
00:44:34 ++ OMERO_DB_USER=postgres
00:44:34 ++ OMERO_DB_PASS=
00:44:34 ++ OMERO_ROOT_PASS=omero
00:44:34 ++ OMERO_DATA_DIR=/OMERO
00:44:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:44:34 + OMERO_DB_NAME=OMERO-server
00:44:34 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:44:34 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:34 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:34 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:44:34 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:44:34 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:44:34 ++ deactivate nondestructive
00:44:34 ++ '[' -n '' ']'
00:44:34 ++ '[' -n '' ']'
00:44:34 ++ '[' -n /bin/bash -o -n '' ']'
00:44:34 ++ hash -r
00:44:34 ++ '[' -n '' ']'
00:44:34 ++ unset VIRTUAL_ENV
00:44:34 ++ '[' '!' nondestructive = nondestructive ']'
00:44:34 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:44:34 ++ export VIRTUAL_ENV
00:44:34 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:34 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:34 ++ export PATH
00:44:34 ++ '[' -n '' ']'
00:44:34 ++ '[' -z '' ']'
00:44:34 ++ _OLD_VIRTUAL_PS1=
00:44:34 ++ PS1='(.venv3) '
00:44:34 ++ export PS1
00:44:34 ++ '[' -n /bin/bash -o -n '' ']'
00:44:34 ++ hash -r
00:44:34 + omero admin stop
00:44:47 Waiting on shutdown. Use CTRL-C to exit
00:44:47 .+ sleep 5
00:45:02 + deactivate
00:45:02 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:02 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:02 + export PATH
00:45:02 + unset _OLD_VIRTUAL_PATH
00:45:02 + '[' -n '' ']'
00:45:02 + '[' -n /bin/bash -o -n '' ']'
00:45:02 + hash -r
00:45:02 + '[' -n '' ']'
00:45:02 + unset VIRTUAL_ENV
00:45:02 + '[' '!' '' = nondestructive ']'
00:45:02 + unset -f deactivate
00:45:02 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:04 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:08 + '[' false = true ']'
00:45:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:08 Skipping PURGE_DATA:CleanDbAndRepo
00:45:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:11 Copied 1 artifact from "OMERO-build" build number 7
00:45:12 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 7
00:45:12 Copied 2 artifacts from "OMERO-build-build" build number 7
00:45:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12654215164284647136.sh
00:45:12 + source /home/settings.env
00:45:12 ++ OMERO_DB_HOST=pg
00:45:12 ++ OMERO_DB_USER=postgres
00:45:12 ++ OMERO_DB_PASS=
00:45:12 ++ OMERO_ROOT_PASS=omero
00:45:12 ++ OMERO_DATA_DIR=/OMERO
00:45:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:12 + OMERO_DB_NAME=OMERO-server
00:45:12 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:12 + mkdir -p /home/omero/omero-server-data
00:45:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:12 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:12 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:12 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:12 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:12 ++ ls OMERO.server-5.6.3-437-854b934e23-ice36.zip
00:45:12 + ZIP=OMERO.server-5.6.3-437-854b934e23-ice36.zip
00:45:12 + '[' '!' -z '' ']'
00:45:12 + DIST=OMERO.server-5.6.3-437-854b934e23-ice36
00:45:12 + unzip OMERO.server-5.6.3-437-854b934e23-ice36.zip
00:45:12 Archive: OMERO.server-5.6.3-437-854b934e23-ice36.zip
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/blitz/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/grid/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/profiles/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/error/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/grid/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/luts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/luts/janelia/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/luts/ncsa_paledit/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/luts/wcif/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/omero/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/omero/analysis_scripts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/omero/annotation_scripts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/omero/export_scripts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/omero/figure_scripts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/omero/import_scripts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/scripts/omero/util_scripts/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/server/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/share/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/share/licenses/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/misc/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__1/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__10/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__11/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__2/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__3/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__4/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__5/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__6/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__7/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__8/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3A__9/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3__4/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3__5/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3__6/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO3__7/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO4.1__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO4.2__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO4.2__0/t/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO4.3__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO4.4__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO4__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.0__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.1__1/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.2__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.3__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4DEV__1/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4DEV__2/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4DEV__3/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/
00:45:12 creating: OMERO.server-5.6.3-437-854b934e23-ice36/var/
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/LICENSE.txt
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/backup.cfg
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/blitz/mail-senders.example
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/blitz/mail-server.example
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/build.properties
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/env.bat
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/env.sh
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/hibernate.properties
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/ice.config
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/logback-cli.xml
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/logback-indexing-cli.xml
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/logback-indexing.xml
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/logback.xml
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/mime.types
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/node1.cfg
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/node2.cfg
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/omero.properties
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/profiles/psql
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/rollover.cfg
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/Windows.cfg
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/error/maintainance.html
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/grid/README
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/grid/default.xml
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/grid/templates.xml
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/grid/windefault.xml
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/ice.config
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/internal.cfg
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/master.cfg
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/templates/robot.template
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/etc/testdropbox.config
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/history.rst
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/OMEZarrReader.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/activation.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/aggdesigner-algorithm.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/aircompressor.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/annotations.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/antlr.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/aopalliance.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/apache-client.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/arns.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/auth.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/avatica-core.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/avatica-metrics.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/aws-core.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/aws-query-protocol.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/aws-xml-protocol.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/base.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-all.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-anim.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-awt-util.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-bridge.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-codec.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-constants.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-css.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-dom.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-ext.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-extension.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-gui-util.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-gvt.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-i18n.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-parser.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-rasterizer-ext.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-rasterizer.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-script.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-slideshow.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-squiggle-ext.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-squiggle.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-svg-dom.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-svgbrowser.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-svggen.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-svgpp.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-svgrasterizer.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-swing.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-transcoder.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-ttf2svg.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-util.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/batik-xml.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/btm.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/bufr.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/c3p0.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/calcite-core.jar
00:45:12 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/lib/client/calcite-linq4j.jar
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00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/psql-header.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/schema.sql
00:45:15 inflating: OMERO.server-5.6.3-437-854b934e23-ice36/sql/psql/OMERO5.4__0/views.sql
00:45:15 + rm -f OMERO.server-5.6.3-437-854b934e23-ice36.zip
00:45:15 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-437-854b934e23-ice36 /home/omero/workspace/OMERO-server/OMERO.server
00:45:15 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:15 ++ deactivate nondestructive
00:45:15 ++ '[' -n '' ']'
00:45:15 ++ '[' -n '' ']'
00:45:15 ++ '[' -n /bin/bash -o -n '' ']'
00:45:15 ++ hash -r
00:45:15 ++ '[' -n '' ']'
00:45:15 ++ unset VIRTUAL_ENV
00:45:15 ++ '[' '!' nondestructive = nondestructive ']'
00:45:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:15 ++ export VIRTUAL_ENV
00:45:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:15 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:15 ++ export PATH
00:45:15 ++ '[' -n '' ']'
00:45:15 ++ '[' -z '' ']'
00:45:15 ++ _OLD_VIRTUAL_PS1=
00:45:15 ++ PS1='(.venv3) '
00:45:15 ++ export PS1
00:45:15 ++ '[' -n /bin/bash -o -n '' ']'
00:45:15 ++ hash -r
00:45:15 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
00:45:15 Collecting zeroc-ice==3.6.5
00:45:16 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:45:18 Installing collected packages: zeroc-ice
00:45:18 Successfully installed zeroc-ice-3.6.5
00:45:18 WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:45:18 You should consider upgrading via the '/home/omero/workspace/OMERO-server/.venv3/bin/python3 -m pip install --upgrade pip' command.
00:45:18 + pip install -U pip future
00:45:19 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
00:45:19 Collecting pip
00:45:19 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
00:45:19 Collecting future
00:45:19 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:19 Installing collected packages: pip, future
00:45:19 Attempting uninstall: pip
00:45:19 Found existing installation: pip 21.2.3
00:45:19 Uninstalling pip-21.2.3:
00:45:19 Successfully uninstalled pip-21.2.3
00:45:21 Successfully installed future-1.0.0 pip-24.0
00:45:21 + pip install markdown
00:45:22 Collecting markdown
00:45:22 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
00:45:22 Collecting importlib-metadata>=4.4 (from markdown)
00:45:22 Downloading importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
00:45:22 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
00:45:22 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
00:45:22 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
00:45:22 Downloading importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
00:45:23 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
00:45:23 Installing collected packages: zipp, importlib-metadata, markdown
00:45:23 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
00:45:23 + pip install reportlab
00:45:24 Collecting reportlab
00:45:24 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB)
00:45:24 Collecting pillow>=9.0.0 (from reportlab)
00:45:24 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
00:45:24 Collecting chardet (from reportlab)
00:45:24 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
00:45:24 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB)
00:45:24 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
00:45:24 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
00:45:24 Installing collected packages: pillow, chardet, reportlab
00:45:26 Successfully installed chardet-5.2.0 pillow-10.2.0 reportlab-4.1.0
00:45:26 + pip install omego
00:45:26 Collecting omego
00:45:26 Using cached omego-0.7.0-py3-none-any.whl
00:45:26 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
00:45:27 Collecting yaclifw>=0.1.1 (from omego)
00:45:27 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:27 Collecting six (from yaclifw>=0.1.1->omego)
00:45:27 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
00:45:27 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
00:45:27 Installing collected packages: six, yaclifw, omego
00:45:27 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
00:45:27 + pip install tables
00:45:28 Collecting tables
00:45:28 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
00:45:28 Collecting numpy>=1.19.0 (from tables)
00:45:28 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
00:45:28 Collecting numexpr>=2.6.2 (from tables)
00:45:28 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
00:45:28 Collecting packaging (from tables)
00:45:28 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
00:45:28 Collecting py-cpuinfo (from tables)
00:45:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:29 Collecting blosc2>=2.3.0 (from tables)
00:45:29 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
00:45:29 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
00:45:29 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
00:45:29 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:29 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
00:45:29 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:45:29 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
00:45:29 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
00:45:29 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
00:45:29 Using cached packaging-24.0-py3-none-any.whl (53 kB)
00:45:29 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:29 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
00:45:29 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
00:45:29 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
00:45:33 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
00:45:33 + pip install jinja2
00:45:34 Collecting jinja2
00:45:34 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
00:45:34 Collecting MarkupSafe>=2.0 (from jinja2)
00:45:34 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
00:45:34 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
00:45:34 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
00:45:34 Installing collected packages: MarkupSafe, jinja2
00:45:34 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
00:45:35 + pip install omero-py
00:45:35 Collecting omero-py
00:45:35 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
00:45:35 Collecting urllib3<2 (from omero-py)
00:45:35 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
00:45:36 Collecting appdirs (from omero-py)
00:45:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:45:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:45:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:45:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:45:36 Collecting PyYAML (from omero-py)
00:45:36 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:45:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:45:36 Collecting requests (from omero-py)
00:45:36 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
00:45:36 Collecting portalocker (from omero-py)
00:45:36 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
00:45:36 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
00:45:36 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
00:45:36 Collecting idna<4,>=2.5 (from requests->omero-py)
00:45:36 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
00:45:36 Collecting certifi>=2017.4.17 (from requests->omero-py)
00:45:36 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
00:45:36 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
00:45:36 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
00:45:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:45:36 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
00:45:36 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
00:45:37 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
00:45:37 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
00:45:37 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
00:45:37 Using cached idna-3.6-py3-none-any.whl (61 kB)
00:45:37 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
00:45:40 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
00:45:40 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:45:40 Collecting omero-metadata
00:45:40 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-5vakxefx/omero-metadata_be8bcb2da0ad480db2517565b6bfa748
00:45:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-5vakxefx/omero-metadata_be8bcb2da0ad480db2517565b6bfa748
00:45:41 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 53e4db51f40d24a406504cf36a2acfc3d43f08de
00:45:41 Installing build dependencies: started
00:45:43 Installing build dependencies: finished with status 'done'
00:45:43 Getting requirements to build wheel: started
00:45:43 Getting requirements to build wheel: finished with status 'done'
00:45:43 Installing backend dependencies: started
00:45:44 Installing backend dependencies: finished with status 'done'
00:45:44 Preparing metadata (pyproject.toml): started
00:45:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.0)
00:45:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
00:45:45 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
00:45:45 Collecting pandas (from omero-metadata)
00:45:45 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
00:45:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
00:45:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:45:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:45:45 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
00:45:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.2.0)
00:45:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:45:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
00:45:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
00:45:45 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
00:45:45 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:45:45 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:45:45 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:45:45 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
00:45:45 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:45:45 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
00:45:45 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
00:45:45 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
00:45:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6)
00:45:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
00:45:45 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB)
00:45:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:45:46 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
00:45:46 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
00:45:46 Building wheels for collected packages: omero-metadata
00:45:46 Building wheel for omero-metadata (pyproject.toml): started
00:45:46 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:45:46 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=3a2e3386114d062da7aa726129bf443a816d5476dc67b5b46a82b0f3baa7f5dd
00:45:46 Stored in directory: /tmp/pip-ephem-wheel-cache-rz3oo0u0/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
00:45:46 Successfully built omero-metadata
00:45:46 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:45:52 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
00:45:52 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:45:53 Collecting omero-cli-render
00:45:53 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-9bxeq2wm/omero-cli-render_64d8ec7ca515467ab0ff2ba079d9271d
00:45:53 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-9bxeq2wm/omero-cli-render_64d8ec7ca515467ab0ff2ba079d9271d
00:45:54 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:54 Switched to a new branch 'merge_ci'
00:45:54 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:54 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c54cf7c89d649fc848c4f3b09590415cc9966f0f
00:45:54 Installing build dependencies: started
00:45:56 Installing build dependencies: finished with status 'done'
00:45:56 Getting requirements to build wheel: started
00:45:56 Getting requirements to build wheel: finished with status 'done'
00:45:56 Installing backend dependencies: started
00:45:57 Installing backend dependencies: finished with status 'done'
00:45:57 Preparing metadata (pyproject.toml): started
00:45:58 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
00:45:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.0)
00:45:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
00:45:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
00:45:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:45:58 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
00:45:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.2.0)
00:45:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:45:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
00:45:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
00:45:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
00:45:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6)
00:45:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
00:45:58 Building wheels for collected packages: omero-cli-render
00:45:58 Building wheel for omero-cli-render (pyproject.toml): started
00:45:58 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:45:58 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=8ab011db2156df1027fa18285232a44fcac096791d6712a80216d29062c6cd20
00:45:58 Stored in directory: /tmp/pip-ephem-wheel-cache-d4du2yqs/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
00:45:58 Successfully built omero-cli-render
00:45:58 Installing collected packages: omero-cli-render
00:45:58 Successfully installed omero-cli-render-0.8.1.dev0
00:45:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:45:59 Collecting omero-cli-duplicate
00:45:59 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-foqjr13k/omero-cli-duplicate_cd06115b419f46db9ab37ae1c89f5dc7
00:45:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-foqjr13k/omero-cli-duplicate_cd06115b419f46db9ab37ae1c89f5dc7
00:46:00 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:00 Switched to a new branch 'merge_ci'
00:46:00 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:00 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 7e709aed0571774de6407d1bc479dfcffd66488b
00:46:00 Installing build dependencies: started
00:46:02 Installing build dependencies: finished with status 'done'
00:46:02 Getting requirements to build wheel: started
00:46:02 Getting requirements to build wheel: finished with status 'done'
00:46:02 Installing backend dependencies: started
00:46:03 Installing backend dependencies: finished with status 'done'
00:46:03 Preparing metadata (pyproject.toml): started
00:46:03 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:03 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.0)
00:46:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
00:46:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:03 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
00:46:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.2.0)
00:46:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
00:46:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
00:46:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
00:46:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
00:46:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6)
00:46:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
00:46:03 Building wheels for collected packages: omero-cli-duplicate
00:46:03 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:04 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:04 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=5fd6c4923a7543cb03611fbbbf2636553df9994e72728ff34d3581aaaf4e32b1
00:46:04 Stored in directory: /tmp/pip-ephem-wheel-cache-72th4160/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
00:46:04 Successfully built omero-cli-duplicate
00:46:04 Installing collected packages: omero-cli-duplicate
00:46:04 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:04 + pip install omero-certificates
00:46:05 Collecting omero-certificates
00:46:05 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
00:46:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.0)
00:46:05 Collecting distro==1.8.0 (from omero-certificates)
00:46:05 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
00:46:05 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
00:46:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:05 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
00:46:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.2.0)
00:46:05 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
00:46:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:05 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
00:46:05 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
00:46:05 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
00:46:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6)
00:46:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
00:46:05 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
00:46:05 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
00:46:05 Installing collected packages: distro, omero-certificates
00:46:05 Successfully installed distro-1.8.0 omero-certificates-0.3.2
00:46:05 + for x in *.tar.gz
00:46:05 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz
00:46:06 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
00:46:06 Installing build dependencies: started
00:46:08 Installing build dependencies: finished with status 'done'
00:46:08 Getting requirements to build wheel: started
00:46:08 Getting requirements to build wheel: finished with status 'done'
00:46:08 Installing backend dependencies: started
00:46:09 Installing backend dependencies: finished with status 'done'
00:46:09 Preparing metadata (pyproject.toml): started
00:46:09 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:09 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.0)
00:46:09 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
00:46:09 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
00:46:09 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
00:46:09 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
00:46:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.2.0)
00:46:09 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
00:46:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
00:46:09 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
00:46:09 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
00:46:09 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
00:46:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6)
00:46:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
00:46:09 Building wheels for collected packages: omero-dropbox
00:46:09 Building wheel for omero-dropbox (pyproject.toml): started
00:46:09 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:09 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=b0ba7e3fab1141cc66d11e82450224bbae0266f14a049cfd02b23f84b9736486
00:46:09 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1
00:46:09 Successfully built omero-dropbox
00:46:10 Installing collected packages: omero-dropbox
00:46:10 Successfully installed omero-dropbox-5.6.3.dev0
00:46:10 + for x in *.tar.gz
00:46:10 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
00:46:10 Processing ./omero_marshal-0.9.1.dev0.tar.gz
00:46:10 Installing build dependencies: started
00:46:12 Installing build dependencies: finished with status 'done'
00:46:12 Getting requirements to build wheel: started
00:46:12 Getting requirements to build wheel: finished with status 'done'
00:46:12 Installing backend dependencies: started
00:46:14 Installing backend dependencies: finished with status 'done'
00:46:14 Preparing metadata (pyproject.toml): started
00:46:14 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:14 Building wheels for collected packages: omero_marshal
00:46:14 Building wheel for omero_marshal (pyproject.toml): started
00:46:14 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:14 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=a0dbc6ee24c37a2fe3e3f85074f9d513e1749cd4c3ccd635dcc0077b6981b6c4
00:46:14 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
00:46:14 Successfully built omero_marshal
00:46:15 Installing collected packages: omero_marshal
00:46:15 Successfully installed omero_marshal-0.9.1.dev0
00:46:15 + for x in *.tar.gz
00:46:15 + pip install -U omero-py-5.19.1.dev0.tar.gz
00:46:15 Processing ./omero-py-5.19.1.dev0.tar.gz
00:46:16 Installing build dependencies: started
00:46:18 Installing build dependencies: finished with status 'done'
00:46:18 Getting requirements to build wheel: started
00:46:18 Getting requirements to build wheel: finished with status 'done'
00:46:18 Installing backend dependencies: started
00:46:19 Installing backend dependencies: finished with status 'done'
00:46:19 Preparing metadata (pyproject.toml): started
00:46:19 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
00:46:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
00:46:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
00:46:19 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
00:46:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
00:46:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
00:46:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
00:46:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
00:46:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
00:46:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
00:46:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
00:46:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
00:46:20 Building wheels for collected packages: omero-py
00:46:20 Building wheel for omero-py (pyproject.toml): started
00:46:21 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:21 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781680 sha256=61380d479d188aaa4951f6332cea893d0b576cf1ffedd3f96f155f034787c2d0
00:46:21 Stored in directory: /home/omero/.cache/pip/wheels/52/ce/ea/f5d1427ab67c2783e3f124f0ebf8311109c5ac331893a591ad
00:46:21 Successfully built omero-py
00:46:21 Installing collected packages: omero-py
00:46:21 Attempting uninstall: omero-py
00:46:21 Found existing installation: omero-py 5.19.0
00:46:21 Uninstalling omero-py-5.19.0:
00:46:22 Successfully uninstalled omero-py-5.19.0
00:46:24 Successfully installed omero-py-5.19.1.dev0
00:46:24 + for x in *.tar.gz
00:46:24 + pip install -U omero-scripts-5.8.1.dev0.tar.gz
00:46:25 Processing ./omero-scripts-5.8.1.dev0.tar.gz
00:46:25 Installing build dependencies: started
00:46:27 Installing build dependencies: finished with status 'done'
00:46:27 Getting requirements to build wheel: started
00:46:27 Getting requirements to build wheel: finished with status 'done'
00:46:27 Installing backend dependencies: started
00:46:28 Installing backend dependencies: finished with status 'done'
00:46:28 Preparing metadata (pyproject.toml): started
00:46:28 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:28 Building wheels for collected packages: omero-scripts
00:46:28 Building wheel for omero-scripts (pyproject.toml): started
00:46:29 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:29 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=f53e7d80819269317eb18a6c2869b9f2b31464594c93b85f8ddffe142498dc0e
00:46:29 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf
00:46:29 Successfully built omero-scripts
00:46:29 Installing collected packages: omero-scripts
00:46:29 Successfully installed omero-scripts-5.8.1.dev0
00:46:29 + for x in *.tar.gz
00:46:29 + pip install -U omero-web-5.25.1.dev0.tar.gz
00:46:30 Processing ./omero-web-5.25.1.dev0.tar.gz
00:46:30 Installing build dependencies: started
00:46:32 Installing build dependencies: finished with status 'done'
00:46:32 Getting requirements to build wheel: started
00:46:33 Getting requirements to build wheel: finished with status 'done'
00:46:33 Installing backend dependencies: started
00:46:34 Installing backend dependencies: finished with status 'done'
00:46:34 Preparing metadata (pyproject.toml): started
00:46:34 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:34 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
00:46:34 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
00:46:34 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
00:46:34 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
00:46:34 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
00:46:35 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
00:46:35 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
00:46:35 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
00:46:35 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:35 Collecting django-csp (from omero-web==5.25.1.dev0)
00:46:35 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
00:46:35 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
00:46:35 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
00:46:35 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
00:46:35 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
00:46:35 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
00:46:35 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
00:46:35 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
00:46:35 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
00:46:35 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
00:46:35 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
00:46:35 Downloading asgiref-3.8.0-py3-none-any.whl.metadata (9.3 kB)
00:46:35 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
00:46:36 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
00:46:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
00:46:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
00:46:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
00:46:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
00:46:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
00:46:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
00:46:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
00:46:36 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
00:46:36 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
00:46:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
00:46:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
00:46:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
00:46:36 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:36 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
00:46:36 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
00:46:36 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
00:46:36 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
00:46:36 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
00:46:36 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
00:46:36 Downloading asgiref-3.8.0-py3-none-any.whl (23 kB)
00:46:36 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
00:46:36 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
00:46:36 Building wheels for collected packages: omero-web
00:46:36 Building wheel for omero-web (pyproject.toml): started
00:46:38 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:38 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769903 sha256=4c0094a429688b11d1c6a7f004b5f54005f41f011d62a8a537f8167c3cb1f579
00:46:38 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a
00:46:38 Successfully built omero-web
00:46:38 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
00:46:41 Successfully installed Django-4.2.11 asgiref-3.8.0 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
00:46:41 + omero config set omero.db.name OMERO-server
00:46:43 + omero config set omero.db.host pg
00:46:45 + omero config set omero.db.user postgres
00:46:47 + omero config set omero.data.dir /home/omero/omero-server-data
00:46:48 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:46:50 + omero config set omero.db.poolsize 25
00:46:52 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:46:53 + omero config set omero.security.trustStorePassword changeit
00:46:55 + omero config set omero.mail.config true
00:46:57 + omero config set omero.mail.from qa@openmicroscopy.org.uk
00:46:59 + omero config set omero.mail.host smtp.dundee.ac.uk
00:47:00 + omero certificates
00:47:01 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
00:47:02 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:47:02 + '[' false = true ']'
00:47:02 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:47:02 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:47:02 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:47:02 2024-03-21 00:47:02,597 [ omego.db] DEBUG dbcommand => upgrade
00:47:02 2024-03-21 00:47:02,597 [ omego.db] DEBUG dbhost => localhost
00:47:02 2024-03-21 00:47:02,597 [ omego.db] DEBUG dbname => OMERO-server
00:47:02 2024-03-21 00:47:02,597 [ omego.db] DEBUG dbpass => omero
00:47:02 2024-03-21 00:47:02,597 [ omego.db] DEBUG dbuser => omero
00:47:02 2024-03-21 00:47:02,597 [ omego.db] DEBUG rootpass => omero
00:47:02 2024-03-21 00:47:02,597 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:47:02 2024-03-21 00:47:02,597 [omego.extern] INFO Executing : omero version
00:47:04 OMERO.py version:
00:47:04 OMERO.server version:
00:47:04 5.6.3-437-854b934e23-ice36
00:47:04 5.19.1.dev0
00:47:04 2024-03-21 00:47:04,393 [omego.extern] INFO Completed [1.796 s]
00:47:04 2024-03-21 00:47:04,393 [omego.extern] DEBUG Using omero CLI from omero
00:47:04 2024-03-21 00:47:04,393 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:04 2024-03-21 00:47:04,393 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:04 2024-03-21 00:47:04,393 [omego.extern] INFO Executing : omero config get --show-password
00:47:06 2024-03-21 00:47:06,022 [omego.extern] INFO Completed [1.629 s]
00:47:06 2024-03-21 00:47:06,023 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:06 2024-03-21 00:47:06,023 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:06 2024-03-21 00:47:06,080 [omego.extern] INFO Completed [0.057 s]
00:47:06 2024-03-21 00:47:06,080 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
00:47:06 2024-03-21 00:47:06,081 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
00:47:06
00:47:06 2024-03-21 00:47:06,081 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:06 2024-03-21 00:47:06,081 [omego.extern] INFO Executing : omero config get --show-password
00:47:07 2024-03-21 00:47:07,713 [omego.extern] INFO Completed [1.632 s]
00:47:07 2024-03-21 00:47:07,714 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:07 2024-03-21 00:47:07,714 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:07 2024-03-21 00:47:07,754 [omego.extern] INFO Completed [0.040 s]
00:47:07 2024-03-21 00:47:07,754 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.29.0.2") at port "5432".\n'
00:47:07 2024-03-21 00:47:07,754 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:07 2024-03-21 00:47:07,754 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:07 2024-03-21 00:47:07,754 [omego.extern] INFO Executing : omero config get --show-password
00:47:09 2024-03-21 00:47:09,331 [omego.extern] INFO Completed [1.577 s]
00:47:09 2024-03-21 00:47:09,331 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:09 2024-03-21 00:47:09,332 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:09 2024-03-21 00:47:09,383 [omego.extern] INFO Completed [0.051 s]
00:47:09 2024-03-21 00:47:09,383 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:09 2024-03-21 00:47:09,383 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:09 2024-03-21 00:47:09,385 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:09 + export LANG=en_US.UTF-8
00:47:09 + LANG=en_US.UTF-8
00:47:09 + export LANGUAGE=en_US:en
00:47:09 + LANGUAGE=en_US:en
00:47:09 + export LC_ALL=en_US.UTF-8
00:47:09 + LC_ALL=en_US.UTF-8
00:47:09 + BUILD_ID=DONT_KILL_ME
00:47:09 + omero admin start
00:47:21 No descriptor given. Using etc/grid/default.xml
00:47:35 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:35 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:35 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:35 Waiting on startup. Use CTRL-C to exit
00:47:35 + omero admin waitup
00:47:37 Waiting on startup. Use CTRL-C to exit
00:47:37 + omero admin diagnostics
00:47:39
00:47:39 ================================================================================
00:47:39 OMERO Diagnostics (admin)
00:47:39 ================================================================================
00:47:39
00:47:39 Commands: java -version 11.0.22 (/usr/bin/java)
00:47:39 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:39 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:39 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:40 Commands: psql --version 16.2 (/usr/bin/psql)
00:47:40 Commands: openssl version 3.0.71 (/usr/bin/openssl)
00:47:40
00:47:40 Component: OMERO.py 5.19.1.dev0
00:47:40 Component: OMERO.server 5.6.3-437-854b934e23-ice36
00:47:40
00:47:40 Server: icegridnode running
00:47:40 Server: Blitz-0 active (pid = 12188, enabled)
00:47:40 Server: DropBox active (pid = 12212, enabled)
00:47:40 Server: FileServer active (pid = 12219, enabled)
00:47:40 Server: Indexer-0 activating (enabled)
00:47:40 Server: MonitorServer active (pid = 12221, enabled)
00:47:40 Server: OMERO.Glacier2 active (pid = 12330, enabled)
00:47:40 Server: OMERO.IceStorm active (pid = 12243, enabled)
00:47:40 Server: PixelData-0 activating (enabled)
00:47:40 Server: Processor-0 active (pid = 12324, enabled)
00:47:40 Server: Tables-0 active (pid = 12329, enabled)
00:47:40 Server: TestDropBox inactive (enabled)
00:47:40
00:47:40 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:40 Log files: Blitz-0.log 34.1 KB errors=0 warnings=1
00:47:40 Log files: DropBox.log 1.2 KB
00:47:40 Log files: FileServer.log 114 B
00:47:40 Log files: Indexer-0.log 2.4 KB
00:47:40 Log files: MonitorServer.log 1.1 KB
00:47:40 Log files: PixelData-0.log 1.6 KB
00:47:40 Log files: Processor-0.log 735 B
00:47:40 Log files: Tables-0.log 961 B
00:47:40 Log files: TestDropBox.log n/a
00:47:40 Log files: master.err 2.1 KB
00:47:40 Log files: master.out 41.5 KB
00:47:40 Log files: Total size 0.09 MB
00:47:40
00:47:40
00:47:40 Environment:OMERO_HOME=(unset)
00:47:40 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:40 Environment:OMERO_NODE=(unset)
00:47:40 Environment:OMERO_MASTER=(unset)
00:47:40 Environment:OMERO_USERDIR=(unset)
00:47:40 Environment:OMERO_TMPDIR=(unset)
00:47:40 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:40 Environment:PYTHONPATH=(unset)
00:47:40 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:40 Environment:LD_LIBRARY_PATH=(unset)
00:47:40 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:40
00:47:40 OMERO SSL port:4064
00:47:40 OMERO TCP port:4063
00:47:40 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:40 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:40
00:47:40 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:47:40 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:47:40 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:47:40 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
00:47:40
00:47:40 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 21 March 2024 5c6c3e1ca3aac5f8e55dd5c5693604d128be5965
00:47:40 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 21 March 2024 5c6c3e1ca3aac5f8e55dd5c5693604d128be5965
00:47:40 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 21 March 2024 5c6c3e1ca3aac5f8e55dd5c5693604d128be5965
00:47:40 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.1 8 December 2023 4f6bf7551ed2d1dfe8e74c857f6a694da40d1d97
00:47:40 Jar: lib/server/ome-common.jar OME Common Java 6.0.21 7 December 2023 fdace3279d4f6b682c5ba47ae4c49daac687459b
00:47:40 Jar: lib/server/ome-jai.jar OME JAI 0.1.3 3 August 2018 489959cb7d24c279249bc08181aa9f734158ca4e
00:47:40 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.2 7 August 2018 68ffca2a95750cbb96f0d11785851aa4a554c0a4
00:47:40 Jar: lib/server/ome-poi.jar OME POI 5.3.7 5 July 2022 79a44040fa896a7c78b4e25da6ba7f4dda204c8e
00:47:40 Jar: lib/server/ome-xml.jar OME XML library 6.3.4 7 December 2023 b4c6f4490d762138453225e0499346a6334f00e5
00:47:40 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT
00:47:40 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT
00:47:40 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT
00:47:40 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT
00:47:40 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT
00:47:40 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT
00:47:40 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT
00:47:41 + deactivate
00:47:41 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:41 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:41 + export PATH
00:47:41 + unset _OLD_VIRTUAL_PATH
00:47:41 + '[' -n '' ']'
00:47:41 + '[' -n /bin/bash -o -n '' ']'
00:47:41 + hash -r
00:47:41 + '[' -n '' ']'
00:47:41 + unset VIRTUAL_ENV
00:47:41 + '[' '!' '' = nondestructive ']'
00:47:41 + unset -f deactivate
00:47:41 Finished: SUCCESS
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