10:16:36 Started by user devspace
10:16:36 Running as SYSTEM
10:16:36 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
10:16:36 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1622144104773108094.sh
10:16:36 + source /home/settings.env
10:16:36 ++ OMERO_DB_HOST=pg
10:16:36 ++ OMERO_DB_USER=postgres
10:16:36 ++ OMERO_DB_PASS=
10:16:36 ++ OMERO_ROOT_PASS=omero
10:16:36 ++ OMERO_DATA_DIR=/OMERO
10:16:36 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:16:36 + OMERO_DB_NAME=OMERO-server
10:16:36 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:16:36 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:16:36 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:16:36 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:16:36 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
10:16:36 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:16:36 ++ deactivate nondestructive
10:16:36 ++ '[' -n '' ']'
10:16:36 ++ '[' -n '' ']'
10:16:36 ++ hash -r
10:16:36 ++ '[' -n '' ']'
10:16:36 ++ unset VIRTUAL_ENV
10:16:36 ++ unset VIRTUAL_ENV_PROMPT
10:16:36 ++ '[' '!' nondestructive = nondestructive ']'
10:16:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:16:36 ++ export VIRTUAL_ENV
10:16:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:16:36 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:16:36 ++ export PATH
10:16:36 ++ '[' -n '' ']'
10:16:36 ++ '[' -z '' ']'
10:16:36 ++ _OLD_VIRTUAL_PS1=
10:16:36 ++ PS1='(.venv3) '
10:16:36 ++ export PS1
10:16:36 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:16:36 ++ export VIRTUAL_ENV_PROMPT
10:16:36 ++ hash -r
10:16:36 + omero admin stop
10:17:01 Server not running
10:17:01 + echo not running
10:17:01 not running
10:17:01 + sleep 5
10:17:06 + deactivate
10:17:06 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:17:06 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:17:06 + export PATH
10:17:06 + unset _OLD_VIRTUAL_PATH
10:17:06 + '[' -n '' ']'
10:17:06 + hash -r
10:17:06 + '[' -n '' ']'
10:17:06 + unset VIRTUAL_ENV
10:17:06 + unset VIRTUAL_ENV_PROMPT
10:17:06 + '[' '!' '' = nondestructive ']'
10:17:06 + unset -f deactivate
10:17:06 + rm -rf /home/omero/workspace/OMERO-server/.venv3
10:19:15 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
10:19:34 + '[' false = true ']'
10:19:34 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
10:19:34 Skipping PURGE_DATA:CleanDbAndRepo
10:19:34 + rm -rf /home/omero/workspace/OMERO-server/omero-20260710-014717-849626.sql /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
10:19:40 Copied 1 artifact from "OMERO-build" build number 5
10:19:40 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 4
10:19:40 Copied 2 artifacts from "OMERO-build-build" build number 12
10:19:40 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7231223279417486768.sh
10:19:40 + source /home/settings.env
10:19:40 ++ OMERO_DB_HOST=pg
10:19:40 ++ OMERO_DB_USER=postgres
10:19:40 ++ OMERO_DB_PASS=
10:19:40 ++ OMERO_ROOT_PASS=omero
10:19:40 ++ OMERO_DATA_DIR=/OMERO
10:19:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:19:40 + OMERO_DB_NAME=OMERO-server
10:19:40 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:19:40 + mkdir -p /home/omero/omero-server-data
10:19:40 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:19:40 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:19:40 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:19:40 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:19:40 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:19:40 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:19:40 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:19:40 ++ ls OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
10:19:40 + ZIP=OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
10:19:40 + '[' '!' -z '' ']'
10:19:40 + DIST=OMERO.server-5.6.3-614-46d99bded2-ice36-b5
10:19:40 + unzip OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
10:19:40 Archive: OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/blitz/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/grid/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/profiles/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/error/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/grid/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/janelia/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/matplotlib/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/ncsa_paledit/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/seaborn/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/luts/wcif/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/analysis_scripts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/annotation_scripts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/export_scripts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/figure_scripts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/import_scripts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/scripts/omero/util_scripts/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/server/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/share/licenses/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/misc/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__1/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__10/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__11/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__2/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__3/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__4/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__5/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__6/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__7/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__8/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3A__9/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__4/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__5/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__6/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO3__7/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.1__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.2__0/t/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.3__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4.4__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO4__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.0__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.1__1/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.2__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__1/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__2/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__3/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/var/
10:19:40 creating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/var/tmp/
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/LICENSE.txt
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/backup.cfg
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/blitz/mail-senders.example
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/blitz/mail-server.example
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/build.properties
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/env.bat
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/env.sh
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/hibernate.properties
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/ice.config
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/logback-cli.xml
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/logback-indexing-cli.xml
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/logback-indexing.xml
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/logback.xml
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/mime.types
10:19:40 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/node1.cfg
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/node2.cfg
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/omero.properties
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/profiles/psql
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/rollover.cfg
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/Windows.cfg
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/error/maintainance.html
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/grid/README
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/grid/default.xml
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/grid/templates.xml
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/grid/windefault.xml
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/ice.config
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/internal.cfg
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/master.cfg
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/templates/robot.template
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/etc/testdropbox.config
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/history.rst
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/OMEZarrReader.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/accessors-smart.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/activation.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/aggdesigner-algorithm.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/aircompressor.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/antlr.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/aopalliance.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/apiguardian-api.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/asm.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/avatica-core.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/avatica-metrics.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/aws-java-sdk-core.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/aws-java-sdk-kms.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/aws-java-sdk-s3.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/base.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-anim.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-awt-util.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-bridge.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-codec.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-constants.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-css.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-dom.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-ext.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-gvt.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-i18n.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-parser.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-script.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-shared-resources.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-svg-dom.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-svggen.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-transcoder.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-util.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/batik-xml.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/btm.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/calcite-core.jar
10:19:41 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/calcite-linq4j.jar
10:19:42 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/cdm-core.jar
10:19:42 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/lib/client/checker-qual.jar
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10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/psql-footer.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/psql-header.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/schema.sql
10:19:54 inflating: OMERO.server-5.6.3-614-46d99bded2-ice36-b5/sql/psql/OMERO5.4__0/views.sql
10:19:54 + rm -f OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip
10:19:54 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-614-46d99bded2-ice36-b5 /home/omero/workspace/OMERO-server/OMERO.server
10:19:54 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:19:54 ++ deactivate nondestructive
10:19:54 ++ '[' -n '' ']'
10:19:54 ++ '[' -n '' ']'
10:19:54 ++ hash -r
10:19:54 ++ '[' -n '' ']'
10:19:54 ++ unset VIRTUAL_ENV
10:19:54 ++ unset VIRTUAL_ENV_PROMPT
10:19:54 ++ '[' '!' nondestructive = nondestructive ']'
10:19:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:19:54 ++ export VIRTUAL_ENV
10:19:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:19:54 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:19:54 ++ export PATH
10:19:54 ++ '[' -n '' ']'
10:19:54 ++ '[' -z '' ']'
10:19:54 ++ _OLD_VIRTUAL_PS1=
10:19:54 ++ PS1='(.venv3) '
10:19:54 ++ export PS1
10:19:54 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:19:54 ++ export VIRTUAL_ENV_PROMPT
10:19:54 ++ hash -r
10:19:54 + pip install -U pip
10:19:55 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
10:19:55 Collecting pip
10:19:55 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
10:19:55 Installing collected packages: pip
10:19:55 Attempting uninstall: pip
10:19:55 Found existing installation: pip 22.3.1
10:19:56 Uninstalling pip-22.3.1:
10:19:56 Successfully uninstalled pip-22.3.1
10:20:09 Successfully installed pip-26.1.2
10:20:09 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
10:20:10 Collecting zeroc-ice==3.6.5
10:20:10 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:20:13 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.9 MB/s 0:00:02
10:20:13 Installing collected packages: zeroc-ice
10:20:16 Successfully installed zeroc-ice-3.6.5
10:20:17 + pip install markdown
10:20:17 Collecting markdown
10:20:17 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
10:20:17 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
10:20:17 Installing collected packages: markdown
10:20:18 Successfully installed markdown-3.10.2
10:20:18 + pip install reportlab
10:20:19 Collecting reportlab
10:20:19 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
10:20:19 Collecting pillow>=9.0.0 (from reportlab)
10:20:19 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
10:20:20 Collecting charset-normalizer (from reportlab)
10:20:20 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
10:20:20 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB)
10:20:20 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
10:20:20 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
10:20:20 Installing collected packages: pillow, charset-normalizer, reportlab
10:20:28
10:20:28 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0
10:20:28 + pip install omego
10:20:29 Collecting omego
10:20:29 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
10:20:29 Collecting future (from omego)
10:20:29 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
10:20:29 Collecting yaclifw>=0.1.1 (from omego)
10:20:29 Using cached yaclifw-0.2.0-py3-none-any.whl
10:20:29 Collecting six (from yaclifw>=0.1.1->omego)
10:20:29 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
10:20:29 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
10:20:29 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:20:30 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
10:20:30 Installing collected packages: six, future, yaclifw, omego
10:20:34
10:20:34 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
10:20:34 + pip install tables
10:20:35 Collecting tables
10:20:35 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
10:20:36 Collecting numpy>=1.20.0 (from tables)
10:20:36 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
10:20:36 Collecting numexpr>=2.6.2 (from tables)
10:20:36 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
10:20:36 Collecting packaging (from tables)
10:20:36 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
10:20:36 Collecting py-cpuinfo (from tables)
10:20:36 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
10:20:36 Collecting blosc2>=2.3.0 (from tables)
10:20:36 Downloading blosc2-4.8.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
10:20:36 Collecting ndindex (from blosc2>=2.3.0->tables)
10:20:36 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
10:20:37 Collecting msgpack (from blosc2>=2.3.0->tables)
10:20:37 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
10:20:37 Collecting pydantic (from blosc2>=2.3.0->tables)
10:20:37 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
10:20:37 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
10:20:37 Downloading httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
10:20:37 Collecting rich (from blosc2>=2.3.0->tables)
10:20:37 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
10:20:37 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
10:20:37 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
10:20:37 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
10:20:37 Downloading anyio-4.14.1-py3-none-any.whl.metadata (4.6 kB)
10:20:37 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
10:20:37 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
10:20:37 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
10:20:38 Downloading httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
10:20:38 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
10:20:38 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
10:20:38 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
10:20:38 Downloading h2-4.3.0-py3-none-any.whl.metadata (5.1 kB)
10:20:38 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
10:20:38 Downloading hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
10:20:38 Collecting hpack<5,>=4.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
10:20:38 Downloading hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
10:20:38 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
10:20:38 Downloading h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
10:20:38 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
10:20:38 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
10:20:38 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
10:20:38 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
10:20:39 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
10:20:39 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
10:20:39 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
10:20:39 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
10:20:39 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
10:20:39 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
10:20:39 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
10:20:39 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
10:20:39 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
10:20:39 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
10:20:39 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
10:20:39 Downloading blosc2-4.8.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB)
10:20:40 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.3/7.3 MB 12.5 MB/s 0:00:00
10:20:40 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
10:20:40 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
10:20:40 Downloading httpx-0.28.1-py3-none-any.whl (73 kB)
10:20:40 Downloading h2-4.3.0-py3-none-any.whl (61 kB)
10:20:40 Downloading hpack-4.2.0-py3-none-any.whl (34 kB)
10:20:40 Downloading httpcore-1.0.9-py3-none-any.whl (78 kB)
10:20:40 Downloading hyperframe-6.1.0-py3-none-any.whl (13 kB)
10:20:40 Downloading h11-0.16.0-py3-none-any.whl (37 kB)
10:20:40 Downloading anyio-4.14.1-py3-none-any.whl (124 kB)
10:20:41 Using cached idna-3.18-py3-none-any.whl (65 kB)
10:20:41 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
10:20:41 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
10:20:41 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
10:20:41 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
10:20:41 Using cached packaging-26.2-py3-none-any.whl (100 kB)
10:20:41 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
10:20:41 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
10:20:41 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
10:20:41 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
10:20:41 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
10:20:41 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
10:20:41 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
10:20:41 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
10:20:41 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
10:20:41 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
10:20:41 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
10:21:26
10:21:26 Successfully installed annotated-types-0.7.0 anyio-4.14.1 blosc2-4.8.0 certifi-2026.6.17 h11-0.16.0 h2-4.3.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
10:21:26 + pip install jinja2
10:21:27 Collecting jinja2
10:21:27 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
10:21:27 Collecting MarkupSafe>=2.0 (from jinja2)
10:21:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
10:21:27 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
10:21:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
10:21:27 Installing collected packages: MarkupSafe, jinja2
10:21:28
10:21:28 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
10:21:28 + pip install omero-py
10:21:29 Collecting omero-py
10:21:29 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
10:21:29 Collecting appdirs (from omero-py)
10:21:29 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:21:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
10:21:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
10:21:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
10:21:30 Collecting PyYAML (from omero-py)
10:21:30 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
10:21:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
10:21:30 Collecting requests (from omero-py)
10:21:30 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
10:21:30 Collecting portalocker (from omero-py)
10:21:30 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
10:21:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9)
10:21:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
10:21:30 Collecting urllib3<3,>=1.26 (from requests->omero-py)
10:21:30 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
10:21:30 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.6.17)
10:21:30 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
10:21:30 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:21:30 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
10:21:30 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
10:21:30 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
10:21:30 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
10:21:30 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
10:21:47
10:21:47 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0
10:21:47 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
10:21:48 Collecting omero-metadata
10:21:48 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-a_tkq2ke/omero-metadata_1af93d7781c74411b991d145b1643172
10:21:48 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-a_tkq2ke/omero-metadata_1af93d7781c74411b991d145b1643172
10:21:50 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit ab097d288b0f034ee01377bebe806be3f7cc7bf6
10:21:50 Installing build dependencies: started
10:21:51 Installing build dependencies: finished with status 'done'
10:21:51 Getting requirements to build wheel: started
10:21:51 Getting requirements to build wheel: finished with status 'done'
10:21:51 Preparing metadata (pyproject.toml): started
10:21:51 Preparing metadata (pyproject.toml): finished with status 'done'
10:21:51 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
10:21:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
10:21:51 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
10:21:52 Collecting pandas (from omero-metadata)
10:21:52 Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
10:21:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
10:21:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
10:21:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6)
10:21:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
10:21:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
10:21:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
10:21:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
10:21:52 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
10:21:52 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
10:21:52 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
10:21:52 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
10:21:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9)
10:21:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
10:21:52 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
10:21:52 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.6.17)
10:21:52 Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
10:21:52 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
10:21:52 Building wheels for collected packages: omero-metadata
10:21:52 Building wheel for omero-metadata (pyproject.toml): started
10:21:52 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
10:21:52 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=f5b9356bf21ee2d3137be10efe8d4280be69c86b221fe7cb5c7d5fed678c2ee2
10:21:52 Stored in directory: /tmp/pip-ephem-wheel-cache-hsxa010i/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
10:21:52 Successfully built omero-metadata
10:21:52 Installing collected packages: python-dateutil, pandas, omero-metadata
10:22:32
10:22:32 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.3 python-dateutil-2.9.0.post0
10:22:32 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
10:22:33 Collecting omero-cli-render
10:22:33 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-hs86rm1g/omero-cli-render_b74a7ea09c794527a1aaa429f06de080
10:22:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-hs86rm1g/omero-cli-render_b74a7ea09c794527a1aaa429f06de080
10:22:34 Running command git checkout -b merge_ci --track origin/merge_ci
10:22:34 Switched to a new branch 'merge_ci'
10:22:34 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:22:34 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 8fdb7fb71b5e87bfbfb2f01f90cb4486deeb7bf2
10:22:34 Installing build dependencies: started
10:22:35 Installing build dependencies: finished with status 'done'
10:22:35 Getting requirements to build wheel: started
10:22:36 Getting requirements to build wheel: finished with status 'done'
10:22:36 Preparing metadata (pyproject.toml): started
10:22:36 Preparing metadata (pyproject.toml): finished with status 'done'
10:22:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
10:22:36 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
10:22:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
10:22:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
10:22:36 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
10:22:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
10:22:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
10:22:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
10:22:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
10:22:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9)
10:22:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
10:22:36 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
10:22:36 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.6.17)
10:22:36 Building wheels for collected packages: omero-cli-render
10:22:36 Building wheel for omero-cli-render (pyproject.toml): started
10:22:36 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
10:22:36 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=3044ce99c097bf43f97dff530adb30b715c1d72f476dfd7f4dd6498bc8496068
10:22:36 Stored in directory: /tmp/pip-ephem-wheel-cache-so4phi3f/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
10:22:36 Successfully built omero-cli-render
10:22:36 Installing collected packages: omero-cli-render
10:22:36 Successfully installed omero-cli-render-0.8.2.dev0
10:22:36 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
10:22:37 Collecting omero-cli-duplicate
10:22:37 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-dfbtw9sj/omero-cli-duplicate_efa33067dcdd4949873c2654d6fe778e
10:22:37 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-dfbtw9sj/omero-cli-duplicate_efa33067dcdd4949873c2654d6fe778e
10:22:38 Running command git checkout -b merge_ci --track origin/merge_ci
10:22:39 Switched to a new branch 'merge_ci'
10:22:39 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:22:39 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 366836876fe9598758b85e7a0296101a379c6ebb
10:22:39 Installing build dependencies: started
10:22:40 Installing build dependencies: finished with status 'done'
10:22:40 Getting requirements to build wheel: started
10:22:40 Getting requirements to build wheel: finished with status 'done'
10:22:40 Preparing metadata (pyproject.toml): started
10:22:40 Preparing metadata (pyproject.toml): finished with status 'done'
10:22:40 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
10:22:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
10:22:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
10:22:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
10:22:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
10:22:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
10:22:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
10:22:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
10:22:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
10:22:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
10:22:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
10:22:40 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
10:22:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.6.17)
10:22:40 Building wheels for collected packages: omero-cli-duplicate
10:22:40 Building wheel for omero-cli-duplicate (pyproject.toml): started
10:22:41 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
10:22:41 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=0174a2c99349a50823577be2b1b76b985e0c7f668cb118f051ab85cc4298a79e
10:22:41 Stored in directory: /tmp/pip-ephem-wheel-cache-iw1sw1u4/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
10:22:41 Successfully built omero-cli-duplicate
10:22:41 Installing collected packages: omero-cli-duplicate
10:22:41 Successfully installed omero-cli-duplicate-0.4.1.dev0
10:22:41 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
10:22:42 Collecting omero-cli-zarr
10:22:42 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-4lsshxr2/omero-cli-zarr_425d0e00591441a8887b14e450201f13
10:22:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-4lsshxr2/omero-cli-zarr_425d0e00591441a8887b14e450201f13
10:22:43 Running command git checkout -b merge_ci --track origin/merge_ci
10:22:43 Switched to a new branch 'merge_ci'
10:22:43 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:22:43 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit f961f53afef4439167a39330c4e0640dcaca7b5f
10:22:43 Installing build dependencies: started
10:22:44 Installing build dependencies: finished with status 'done'
10:22:44 Getting requirements to build wheel: started
10:22:45 Getting requirements to build wheel: finished with status 'done'
10:22:45 Installing backend dependencies: started
10:22:46 Installing backend dependencies: finished with status 'done'
10:22:46 Preparing metadata (pyproject.toml): started
10:22:47 Preparing metadata (pyproject.toml): finished with status 'done'
10:22:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
10:22:47 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
10:22:47 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
10:22:47 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
10:22:47 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:47 Using cached dask-2026.7.0-py3-none-any.whl.metadata (3.8 kB)
10:22:47 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:47 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
10:22:47 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:47 Using cached fsspec-2026.6.0-py3-none-any.whl.metadata (10 kB)
10:22:48 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached aiohttp-3.14.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
10:22:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
10:22:48 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
10:22:48 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
10:22:48 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
10:22:48 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
10:22:48 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
10:22:48 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB)
10:22:48 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:48 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
10:22:48 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.2)
10:22:49 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:49 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
10:22:49 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
10:22:49 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:49 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
10:22:49 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:49 Using cached s3fs-2026.6.0-py3-none-any.whl.metadata (1.2 kB)
10:22:49 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:49 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
10:22:49 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:49 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
10:22:49 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:49 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB)
10:22:49 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.7.0)
10:22:50 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:50 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
10:22:50 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0)
10:22:50 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.2)
10:22:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
10:22:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
10:22:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0)
10:22:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
10:22:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
10:22:50 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:50 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
10:22:50 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:50 Using cached aiobotocore-3.7.0-py3-none-any.whl.metadata (28 kB)
10:22:50 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:50 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
10:22:50 Collecting botocore<1.43.1,>=1.42.90 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:50 Using cached botocore-1.43.0-py3-none-any.whl.metadata (5.5 kB)
10:22:50 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
10:22:50 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:50 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
10:22:51 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:51 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
10:22:51 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:51 Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
10:22:51 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:51 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
10:22:51 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:51 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
10:22:51 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:51 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
10:22:52 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:52 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
10:22:52 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:52 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB)
10:22:52 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:52 Using cached yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (94 kB)
10:22:52 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.1,>=1.42.90->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0)
10:22:52 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
10:22:52 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.18)
10:22:52 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:52 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
10:22:52 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:52 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
10:22:53 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:53 Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB)
10:22:53 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:53 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
10:22:53 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:53 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
10:22:53 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:53 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
10:22:53 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:53 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
10:22:53 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
10:22:53 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
10:22:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9)
10:22:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.6.17)
10:22:53 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
10:22:53 Using cached dask-2026.7.0-py3-none-any.whl (1.5 MB)
10:22:53 Using cached click-8.4.2-py3-none-any.whl (119 kB)
10:22:53 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
10:22:53 Using cached fsspec-2026.6.0-py3-none-any.whl (203 kB)
10:22:53 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
10:22:53 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
10:22:53 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
10:22:53 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
10:22:54 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
10:22:54 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
10:22:54 Using cached s3fs-2026.6.0-py3-none-any.whl (32 kB)
10:22:54 Using cached aiobotocore-3.7.0-py3-none-any.whl (89 kB)
10:22:54 Using cached aiohttp-3.14.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
10:22:54 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
10:22:54 Using cached botocore-1.43.0-py3-none-any.whl (15.0 MB)
10:22:54 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
10:22:54 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
10:22:54 Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (159 kB)
10:22:54 Using cached yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (106 kB)
10:22:54 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
10:22:54 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
10:22:54 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
10:22:54 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
10:22:54 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
10:22:54 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
10:22:54 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
10:22:54 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
10:22:54 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
10:22:54 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
10:22:54 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
10:22:54 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
10:22:54 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
10:22:54 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
10:22:54 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
10:22:54 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
10:22:55 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
10:22:55 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
10:22:55 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
10:22:55 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
10:22:55 Building wheels for collected packages: omero-cli-zarr
10:22:55 Building wheel for omero-cli-zarr (pyproject.toml): started
10:22:55 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
10:22:55 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+gf961f53-py3-none-any.whl size=38289 sha256=0363748fcf915080f473a0f366f01f02637cea04d28a4214278c90d583108ec8
10:22:55 Stored in directory: /tmp/pip-ephem-wheel-cache-mjzrqm69/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
10:22:55 Successfully built omero-cli-zarr
10:22:55 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
10:23:30 Attempting uninstall: pydantic-core
10:23:30 Found existing installation: pydantic_core 2.46.4
10:23:30 Uninstalling pydantic_core-2.46.4:
10:23:30 Successfully uninstalled pydantic_core-2.46.4
10:24:04 Attempting uninstall: pydantic
10:24:04 Found existing installation: pydantic 2.13.4
10:24:04 Uninstalling pydantic-2.13.4:
10:24:04 Successfully uninstalled pydantic-2.13.4
10:24:43
10:24:43 Successfully installed Deprecated-1.3.1 aiobotocore-3.7.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.1 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.0 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.6.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev162+gf961f53 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.6.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.2.2 yarl-1.24.2 zarr-3.1.6 zipp-4.1.0
10:24:43 + pip install omero-certificates
10:24:44 Collecting omero-certificates
10:24:44 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
10:24:44 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
10:24:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
10:24:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
10:24:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
10:24:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
10:24:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
10:24:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
10:24:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
10:24:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
10:24:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
10:24:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
10:24:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
10:24:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.6.17)
10:24:44 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
10:24:45 Installing collected packages: omero-certificates
10:24:45 Successfully installed omero-certificates-0.4.0
10:24:45 + for x in *.tar.gz
10:24:45 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
10:24:46 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:24:46 Installing build dependencies: started
10:24:47 Installing build dependencies: finished with status 'done'
10:24:47 Getting requirements to build wheel: started
10:24:47 Getting requirements to build wheel: finished with status 'done'
10:24:47 Preparing metadata (pyproject.toml): started
10:24:48 Preparing metadata (pyproject.toml): finished with status 'done'
10:24:48 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
10:24:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
10:24:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
10:24:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
10:24:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
10:24:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
10:24:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:24:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
10:24:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
10:24:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
10:24:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
10:24:48 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
10:24:48 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
10:24:48 Building wheels for collected packages: omero-dropbox
10:24:48 Building wheel for omero-dropbox (pyproject.toml): started
10:24:48 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:24:48 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=c69c96da3165fb753101ada3f84e8a3d211fad07b19b6844b1b29dab86c4c6fe
10:24:48 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
10:24:48 Successfully built omero-dropbox
10:24:48 Installing collected packages: omero-dropbox
10:24:49 Successfully installed omero-dropbox-5.7.1.dev0
10:24:49 + for x in *.tar.gz
10:24:49 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
10:24:49 Processing ./omero_marshal-0.9.2.dev0.tar.gz
10:24:50 Installing build dependencies: started
10:24:51 Installing build dependencies: finished with status 'done'
10:24:51 Getting requirements to build wheel: started
10:24:51 Getting requirements to build wheel: finished with status 'done'
10:24:51 Preparing metadata (pyproject.toml): started
10:24:51 Preparing metadata (pyproject.toml): finished with status 'done'
10:24:51 Building wheels for collected packages: omero_marshal
10:24:51 Building wheel for omero_marshal (pyproject.toml): started
10:24:52 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:24:52 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=016147e163c764c1669af5b7a63f20250d7fb7ed1f74cd077d6524408d88a270
10:24:52 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
10:24:52 Successfully built omero_marshal
10:24:52 Installing collected packages: omero_marshal
10:24:54 Successfully installed omero_marshal-0.9.2.dev0
10:24:54 + for x in *.tar.gz
10:24:54 + pip install -U omero_py-5.22.2.dev0.tar.gz
10:24:55 Processing ./omero_py-5.22.2.dev0.tar.gz
10:24:55 Installing build dependencies: started
10:24:57 Installing build dependencies: finished with status 'done'
10:24:57 Getting requirements to build wheel: started
10:24:57 Getting requirements to build wheel: finished with status 'done'
10:24:57 Preparing metadata (pyproject.toml): started
10:24:57 Preparing metadata (pyproject.toml): finished with status 'done'
10:24:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
10:24:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
10:24:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
10:24:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
10:24:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
10:24:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
10:24:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
10:24:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
10:24:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
10:24:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
10:24:57 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
10:24:57 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
10:24:57 Building wheels for collected packages: omero-py
10:24:57 Building wheel for omero-py (pyproject.toml): started
10:24:58 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:24:58 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=d4d241c38c1a98c8bfd38a93aebd6accdb46ac054513ea1ccddfc235f1579aeb
10:24:58 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
10:24:58 Successfully built omero-py
10:24:59 Installing collected packages: omero-py
10:24:59 Attempting uninstall: omero-py
10:24:59 Found existing installation: omero-py 5.22.1
10:24:59 Uninstalling omero-py-5.22.1:
10:25:10 Successfully uninstalled omero-py-5.22.1
10:25:25 Successfully installed omero-py-5.22.2.dev0
10:25:26 + for x in *.tar.gz
10:25:26 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
10:25:26 Processing ./omero_scripts-5.10.1.dev0.tar.gz
10:25:26 Installing build dependencies: started
10:25:28 Installing build dependencies: finished with status 'done'
10:25:28 Getting requirements to build wheel: started
10:25:28 Getting requirements to build wheel: finished with status 'done'
10:25:28 Preparing metadata (pyproject.toml): started
10:25:28 Preparing metadata (pyproject.toml): finished with status 'done'
10:25:28 Building wheels for collected packages: omero-scripts
10:25:28 Building wheel for omero-scripts (pyproject.toml): started
10:25:28 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:25:28 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=dbeae4f2980f83860a264ba67583dd005cdd80c4aee7f1e71bbe5bb2338209de
10:25:28 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
10:25:28 Successfully built omero-scripts
10:25:29 Installing collected packages: omero-scripts
10:25:29 Successfully installed omero-scripts-5.10.1.dev0
10:25:30 + for x in *.tar.gz
10:25:30 + pip install -U omero_web-5.32.1.dev0.tar.gz
10:25:30 Processing ./omero_web-5.32.1.dev0.tar.gz
10:25:31 Installing build dependencies: started
10:25:32 Installing build dependencies: finished with status 'done'
10:25:32 Getting requirements to build wheel: started
10:25:32 Getting requirements to build wheel: finished with status 'done'
10:25:32 Preparing metadata (pyproject.toml): started
10:25:32 Preparing metadata (pyproject.toml): finished with status 'done'
10:25:32 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
10:25:33 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
10:25:33 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
10:25:33 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
10:25:33 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
10:25:33 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
10:25:33 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
10:25:33 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
10:25:33 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:25:33 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
10:25:33 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
10:25:33 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
10:25:33 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
10:25:33 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
10:25:33 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
10:25:33 Collecting pytz (from omero-web==5.32.1.dev0)
10:25:33 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
10:25:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
10:25:33 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
10:25:33 Collecting importlib-resources (from omero-web==5.32.1.dev0)
10:25:33 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
10:25:34 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
10:25:34 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
10:25:34 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
10:25:34 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
10:25:34 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
10:25:34 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
10:25:34 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
10:25:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
10:25:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
10:25:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
10:25:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
10:25:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
10:25:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
10:25:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
10:25:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
10:25:34 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
10:25:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
10:25:34 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:25:34 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
10:25:34 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
10:25:34 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
10:25:34 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
10:25:34 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
10:25:34 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
10:25:34 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
10:25:34 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
10:25:34 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
10:25:34 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
10:25:34 Building wheels for collected packages: omero-web
10:25:34 Building wheel for omero-web (pyproject.toml): started
10:25:35 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:25:35 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=ed30816bb7a408f90d6ca76c401b08dfa87e7c655e7a8cc05e98e803987d66c1
10:25:35 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
10:25:35 Successfully built omero-web
10:25:36 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
10:26:46
10:26:46 Successfully installed Django-5.2.16 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
10:26:46 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:26:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
10:26:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
10:26:46 --2026-07-10 10:26:46-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:26:46 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.111.133, 185.199.110.133, ...
10:26:46 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
10:26:46 HTTP request sent, awaiting response... 200 OK
10:26:46 Length: 139337 (136K) [text/plain]
10:26:46 Saving to: ‘Figure_To_Pdf.py’
10:26:46
10:26:46 0K .......... .......... .......... .......... .......... 36% 2.90M 0s
10:26:46 50K .......... .......... .......... .......... .......... 73% 4.31M 0s
10:26:46 100K .......... .......... .......... ...... 100% 12.9M=0.03s
10:26:46
10:26:46 2026-07-10 10:26:46 (4.30 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
10:26:46
10:26:46 + chmod 755 Figure_To_Pdf.py
10:26:46 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
10:26:46 + omero config set omero.db.name OMERO-server
10:26:53 + omero config set omero.db.host pg
10:26:57 + omero config set omero.db.user postgres
10:27:02 + omero config set omero.data.dir /home/omero/omero-server-data
10:27:07 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
10:27:11 + omero config set omero.db.poolsize 25
10:27:16 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
10:27:21 + omero config set omero.security.trustStorePassword changeit
10:27:26 + omero config set omero.mail.config true
10:27:31 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
10:27:36 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
10:27:41 + omero certificates
10:27:45 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
10:27:45 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
10:27:45 + '[' false = true ']'
10:27:45 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
10:27:45 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
10:27:45 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
10:27:45 2026-07-10 10:27:45,844 [ omego.db] DEBUG dbcommand => upgrade
10:27:45 2026-07-10 10:27:45,844 [ omego.db] DEBUG dbhost => localhost
10:27:45 2026-07-10 10:27:45,844 [ omego.db] DEBUG dbname => OMERO-server
10:27:45 2026-07-10 10:27:45,844 [ omego.db] DEBUG dbpass => omero
10:27:45 2026-07-10 10:27:45,844 [ omego.db] DEBUG dbuser => omero
10:27:45 2026-07-10 10:27:45,844 [ omego.db] DEBUG rootpass => omero
10:27:45 2026-07-10 10:27:45,844 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
10:27:45 2026-07-10 10:27:45,845 [omego.extern] INFO Executing : omero version
10:27:50 OMERO.py version:
10:27:50 OMERO.server version:
10:27:50 5.6.3-614-46d99bded2-ice36-b5
10:27:50 5.22.2.dev0
10:27:50 2026-07-10 10:27:50,589 [omego.extern] INFO Completed [4.744 s]
10:27:50 2026-07-10 10:27:50,589 [omego.extern] DEBUG Using omero CLI from omero
10:27:50 2026-07-10 10:27:50,589 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
10:27:50 2026-07-10 10:27:50,589 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:27:50 2026-07-10 10:27:50,589 [omego.extern] INFO Executing : omero config get --show-password
10:27:55 2026-07-10 10:27:55,376 [omego.extern] INFO Completed [4.787 s]
10:27:55 2026-07-10 10:27:55,376 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:27:55 2026-07-10 10:27:55,376 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
10:27:55 2026-07-10 10:27:55,382 [omego.extern] INFO Completed [0.006 s]
10:27:55 2026-07-10 10:27:55,382 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
10:27:55 2026-07-10 10:27:55,382 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
10:27:55
10:27:55 2026-07-10 10:27:55,382 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:27:55 2026-07-10 10:27:55,382 [omego.extern] INFO Executing : omero config get --show-password
10:27:59 2026-07-10 10:27:59,826 [omego.extern] INFO Completed [4.444 s]
10:27:59 2026-07-10 10:27:59,827 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:27:59 2026-07-10 10:27:59,827 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
10:27:59 2026-07-10 10:27:59,845 [omego.extern] INFO Completed [0.018 s]
10:27:59 2026-07-10 10:27:59,845 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
10:27:59 2026-07-10 10:27:59,845 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:27:59 2026-07-10 10:27:59,845 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:27:59 2026-07-10 10:27:59,845 [omego.extern] INFO Executing : omero config get --show-password
10:28:04 2026-07-10 10:28:04,377 [omego.extern] INFO Completed [4.532 s]
10:28:04 2026-07-10 10:28:04,377 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:28:04 2026-07-10 10:28:04,377 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:28:04 2026-07-10 10:28:04,457 [omego.extern] INFO Completed [0.079 s]
10:28:04 2026-07-10 10:28:04,457 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
10:28:04 2026-07-10 10:28:04,457 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
10:28:04 2026-07-10 10:28:04,509 [ omego.db] INFO Database is already at OMERO5.4__0
10:28:04 + export LANG=en_US.UTF-8
10:28:04 + LANG=en_US.UTF-8
10:28:04 + export LANGUAGE=en_US:en
10:28:04 + LANGUAGE=en_US:en
10:28:04 + export LC_ALL=en_US.UTF-8
10:28:04 + LC_ALL=en_US.UTF-8
10:28:04 + BUILD_ID=DONT_KILL_ME
10:28:04 + omero admin start
10:28:14 WARNING: lock files in /home/omero/omero-server-data
10:28:14 ----------------------------------------
10:28:14 /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock
10:28:14 ----------------------------------------
10:28:14
10:28:14 You may want to stop all server processes and remove
10:28:14 these files manually. Lock files can remain after an
10:28:14 abrupt server outage and are especially frequent on
10:28:14 remotely mounted filesystems like NFS.
10:28:14
10:28:14 No descriptor given. Using etc/grid/default.xml
10:28:24 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
10:28:24 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
10:28:24 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
10:28:24 Waiting on startup. Use CTRL-C to exit
10:28:24 + omero admin waitup
10:28:29 Waiting on startup. Use CTRL-C to exit
10:28:29 + omero admin diagnostics
10:28:33
10:28:33 ================================================================================
10:28:33 OMERO Diagnostics (admin)
10:28:33 ================================================================================
10:28:33
10:28:33 Commands: java -version 21.0.11 (/usr/bin/java)
10:28:34 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
10:28:34 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
10:28:34 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
10:28:34 Commands: psql --version 16.14 (/usr/bin/psql)
10:28:34 Commands: openssl version 3.5.527 (/usr/bin/openssl)
10:28:34
10:28:34 Component: OMERO.py 5.22.2.dev0
10:28:34 Component: OMERO.server 5.6.3-614-46d99bded2-ice36-b5
10:28:34
10:28:34 Server: icegridnode running
10:28:34 Server: Blitz-0 active (pid = 3268, enabled)
10:28:34 Server: Indexer-0 active (pid = 3288, enabled)
10:28:34 Server: OMERO.Glacier2 active (pid = 3319, enabled)
10:28:34 Server: OMERO.IceStorm active (pid = 3313, enabled)
10:28:34 Server: Processor-0 active (pid = 3309, enabled)
10:28:34 Server: Tables-0 active (pid = 3293, enabled)
10:28:34
10:28:34 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
10:28:34 Log files: Blitz-0.log 38.7 KB errors=0 warnings=5
10:28:34 Log files: DropBox.log n/a
10:28:34 Log files: FileServer.log n/a
10:28:34 Log files: Indexer-0.log 2.6 KB
10:28:34 Log files: MonitorServer.log n/a
10:28:34 Log files: Processor-0.log 735 B
10:28:34 Log files: Tables-0.log 961 B
10:28:34 Log files: TestDropBox.log n/a
10:28:34 Log files: master.err empty
10:28:34 Log files: master.out 30.5 KB
10:28:34 Log files: Total size 0.07 MB
10:28:34
10:28:34
10:28:34 Environment:OMERO_HOME=(unset)
10:28:34 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:28:34 Environment:OMERO_NODE=(unset)
10:28:34 Environment:OMERO_MASTER=(unset)
10:28:34 Environment:OMERO_USERDIR=(unset)
10:28:34 Environment:OMERO_TMPDIR=(unset)
10:28:34 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:28:34 Environment:PYTHONPATH=(unset)
10:28:34 Environment:ICE_HOME=/opt/ice-3.6.5
10:28:34 Environment:LD_LIBRARY_PATH=(unset)
10:28:34 Environment:DYLD_LIBRARY_PATH=(unset)
10:28:34
10:28:34 OMERO SSL port:4064
10:28:34 OMERO TCP port:4063
10:28:34 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
10:28:34 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
10:28:34
10:28:34 JVM settings: Blitz-${index} -Xmx7200m
10:28:34 JVM settings: Indexer-${index} -Xmx4800m
10:28:34 JVM settings: PixelData-${index} -Xmx7200m
10:28:34 JVM settings: Repository-${index} -Xmx4800m
10:28:34
10:28:34 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
10:28:34 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
10:28:34 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
10:28:34 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
10:28:34 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
10:28:34 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
10:28:34 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
10:28:34 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
10:28:34 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
10:28:34 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
10:28:34 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
10:28:34 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
10:28:34 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
10:28:34 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
10:28:34 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
10:28:34 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
10:28:34 + deactivate
10:28:34 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:28:34 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:28:34 + export PATH
10:28:34 + unset _OLD_VIRTUAL_PATH
10:28:34 + '[' -n '' ']'
10:28:34 + hash -r
10:28:34 + '[' -n '' ']'
10:28:34 + unset VIRTUAL_ENV
10:28:34 + unset VIRTUAL_ENV_PROMPT
10:28:34 + '[' '!' '' = nondestructive ']'
10:28:34 + unset -f deactivate
10:28:34 Finished: SUCCESS
