07:36:42 Started by user devspace
07:36:42 Running as SYSTEM
07:36:42 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
07:36:42 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14455948851433220812.sh
07:36:42 + source /home/settings.env
07:36:42 ++ OMERO_DB_HOST=pg
07:36:42 ++ OMERO_DB_USER=postgres
07:36:42 ++ OMERO_DB_PASS=
07:36:42 ++ OMERO_ROOT_PASS=omero
07:36:42 ++ OMERO_DATA_DIR=/OMERO
07:36:42 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:36:42 + OMERO_DB_NAME=OMERO-server
07:36:42 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
07:36:42 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:36:42 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:36:42 + OMERO_DATA_DIR=/home/omero/omero-server-data
07:36:42 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
07:36:42 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
07:36:42 ++ deactivate nondestructive
07:36:42 ++ '[' -n '' ']'
07:36:42 ++ '[' -n '' ']'
07:36:42 ++ '[' -n /bin/bash -o -n '' ']'
07:36:42 ++ hash -r
07:36:42 ++ '[' -n '' ']'
07:36:42 ++ unset VIRTUAL_ENV
07:36:42 ++ '[' '!' nondestructive = nondestructive ']'
07:36:42 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
07:36:42 ++ export VIRTUAL_ENV
07:36:42 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:36:42 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:36:42 ++ export PATH
07:36:42 ++ '[' -n '' ']'
07:36:42 ++ '[' -z '' ']'
07:36:42 ++ _OLD_VIRTUAL_PS1=
07:36:42 ++ PS1='(.venv3) '
07:36:42 ++ export PS1
07:36:42 ++ '[' -n /bin/bash -o -n '' ']'
07:36:42 ++ hash -r
07:36:42 + omero admin stop
07:36:51 Missing internal configuration. Pass --force-rewrite to the command.
07:36:51 + echo not running
07:36:51 not running
07:36:51 + sleep 5
07:36:56 + deactivate
07:36:56 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
07:36:56 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:36:56 + export PATH
07:36:56 + unset _OLD_VIRTUAL_PATH
07:36:56 + '[' -n '' ']'
07:36:56 + '[' -n /bin/bash -o -n '' ']'
07:36:56 + hash -r
07:36:56 + '[' -n '' ']'
07:36:56 + unset VIRTUAL_ENV
07:36:56 + '[' '!' '' = nondestructive ']'
07:36:56 + unset -f deactivate
07:36:56 + rm -rf /home/omero/workspace/OMERO-server/.venv3
07:36:56 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
07:36:59 + '[' true = true ']'
07:36:59 + dropdb -h pg -U postgres OMERO-server
07:37:00 dropdb: error: database removal failed: ERROR: database "OMERO-server" does not exist
07:37:00 + echo 'First run or already exists'
07:37:00 First run or already exists
07:37:00 + rm -rf /home/omero/omero-server-data
07:37:00 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-py-5.19.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
07:37:03 Copied 1 artifact from "OMERO-build" build number 2
07:37:03 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 2
07:37:03 Copied 2 artifacts from "OMERO-build-build" build number 2
07:37:03 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5909130259172565140.sh
07:37:03 + source /home/settings.env
07:37:03 ++ OMERO_DB_HOST=pg
07:37:03 ++ OMERO_DB_USER=postgres
07:37:03 ++ OMERO_DB_PASS=
07:37:03 ++ OMERO_ROOT_PASS=omero
07:37:03 ++ OMERO_DATA_DIR=/OMERO
07:37:03 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:37:03 + OMERO_DB_NAME=OMERO-server
07:37:03 + OMERO_DATA_DIR=/home/omero/omero-server-data
07:37:03 + mkdir -p /home/omero/omero-server-data
07:37:03 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
07:37:03 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:37:03 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
07:37:03 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
07:37:03 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
07:37:03 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
07:37:03 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
07:37:03 ++ ls OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:37:03 + ZIP=OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:37:03 + '[' '!' -z '' ']'
07:37:03 + DIST=OMERO.server-5.6.3-435-12cd9157e9-ice36
07:37:03 + unzip OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:37:03 Archive: OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/grid/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/profiles/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/error/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/janelia/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/ncsa_paledit/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/luts/wcif/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/analysis_scripts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/annotation_scripts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/export_scripts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/figure_scripts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/import_scripts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/scripts/omero/util_scripts/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/misc/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__1/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__10/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__11/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__2/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__3/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__4/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__5/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__6/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__7/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__8/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__9/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__4/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__5/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__6/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__7/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.1__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/t/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.3__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.4__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.0__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.1__1/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.2__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__1/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__2/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__3/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/
07:37:03 creating: OMERO.server-5.6.3-435-12cd9157e9-ice36/var/
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/LICENSE.txt
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/backup.cfg
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/mail-senders.example
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/blitz/mail-server.example
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/build.properties
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/env.bat
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/env.sh
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/hibernate.properties
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/ice.config
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-cli.xml
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-indexing-cli.xml
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback-indexing.xml
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/logback.xml
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/mime.types
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/node1.cfg
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/node2.cfg
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/omero.properties
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/profiles/psql
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/rollover.cfg
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/Windows.cfg
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/error/maintainance.html
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/README
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/default.xml
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/templates.xml
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/grid/windefault.xml
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/ice.config
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/internal.cfg
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/master.cfg
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/templates/robot.template
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/etc/testdropbox.config
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/history.rst
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/OMEZarrReader.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/activation.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aggdesigner-algorithm.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aircompressor.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/annotations.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/antlr.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/aopalliance.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/avatica-core.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/avatica-metrics.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/base.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-all.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-anim.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-awt-util.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-bridge.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-codec.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-constants.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-css.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-dom.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-ext.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-extension.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-gui-util.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-gvt.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-i18n.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-parser.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-rasterizer-ext.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-rasterizer.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-script.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-slideshow.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-squiggle-ext.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-squiggle.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svg-dom.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svgbrowser.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svggen.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svgpp.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-svgrasterizer.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-swing.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-transcoder.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-ttf2svg.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-util.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/batik-xml.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/btm.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/bufr.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/c3p0.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/calcite-core.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/calcite-linq4j.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/cdm-core.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/checker-qual.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/commons-beanutils.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/commons-codec.jar
07:37:03 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/client/commons-collections.jar
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07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/perf4j.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/postgresql.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/protobuf-java.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/quartz.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/re2j.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/reflectasm.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/rhino.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/serializer.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/sketches-core.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/slf4j-api.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/snakeyaml.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/solr-analysis-extras.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/solr-commons-csv.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/solr-core.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/solr-solrj.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/specification.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-aop.jar
07:37:05 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-beans.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-context-support.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-context.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-core.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-expression.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-jdbc.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-jms.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-ldap-core.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-messaging.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-orm.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-security-core.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-security-ldap.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/spring-tx.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/sqlite-jdbc.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/subethasmtp.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/turbojpeg.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/udunits.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/xalan.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/xercesImpl.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/xml-apis-ext.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/xml-apis.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/xmlgraphics-commons.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/xmpcore.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/lib/server/xpp3.jar
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/README
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/agpl.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/antlr.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/apache-v1.1.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/apache-v2.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/asm.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/bouncy_castle_license.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/bsd.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/cddl-v1.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/cpl-v10.html
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/crystalclear.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/django.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/dom4j.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/epl-v1.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/fbsd.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/freemarker.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/gpl-v2.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/gpl.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/gtest.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/iconsweets_license.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/jamon.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/jmock.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/jquery.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/jtidy.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/lgpl-3.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/lgpl-v2.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/lgpl-v2.1.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/lgpl-v3.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/lgpl.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/matplotlib.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/mit.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/mpl-v1_0.htm
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/npl-1_1.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/path.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/pil.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/postgresql.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/psf-v2.0.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/psf-v2.5.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/scons.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/slf4j.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/tablelayout.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/which.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/zlib-libpng.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/share/licenses/zpl-v2.1.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/README.txt
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/misc/Makefile
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/misc/current.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/misc/enums.py
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/psql-header.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/schema.sql
07:37:06 inflating: OMERO.server-5.6.3-435-12cd9157e9-ice36/sql/psql/OMERO5.4__0/views.sql
07:37:06 + rm -f OMERO.server-5.6.3-435-12cd9157e9-ice36.zip
07:37:06 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-435-12cd9157e9-ice36 /home/omero/workspace/OMERO-server/OMERO.server
07:37:06 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
07:37:06 ++ deactivate nondestructive
07:37:06 ++ '[' -n '' ']'
07:37:06 ++ '[' -n '' ']'
07:37:06 ++ '[' -n /bin/bash -o -n '' ']'
07:37:06 ++ hash -r
07:37:06 ++ '[' -n '' ']'
07:37:06 ++ unset VIRTUAL_ENV
07:37:06 ++ '[' '!' nondestructive = nondestructive ']'
07:37:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
07:37:06 ++ export VIRTUAL_ENV
07:37:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:37:06 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:37:06 ++ export PATH
07:37:06 ++ '[' -n '' ']'
07:37:06 ++ '[' -z '' ']'
07:37:06 ++ _OLD_VIRTUAL_PS1=
07:37:06 ++ PS1='(.venv3) '
07:37:06 ++ export PS1
07:37:06 ++ '[' -n /bin/bash -o -n '' ']'
07:37:06 ++ hash -r
07:37:06 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
07:37:06 Collecting zeroc-ice==3.6.5
07:37:07 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
07:37:09 Installing collected packages: zeroc-ice
07:37:10 Successfully installed zeroc-ice-3.6.5
07:37:10 WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
07:37:10 You should consider upgrading via the '/home/omero/workspace/OMERO-server/.venv3/bin/python3 -m pip install --upgrade pip' command.
07:37:10 + pip install -U pip future
07:37:10 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
07:37:10 Collecting pip
07:37:10 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
07:37:10 Collecting future
07:37:10 Using cached future-1.0.0-py3-none-any.whl (491 kB)
07:37:10 Installing collected packages: pip, future
07:37:10 Attempting uninstall: pip
07:37:10 Found existing installation: pip 21.2.3
07:37:11 Uninstalling pip-21.2.3:
07:37:11 Successfully uninstalled pip-21.2.3
07:37:12 Successfully installed future-1.0.0 pip-24.0
07:37:12 + pip install markdown
07:37:13 Collecting markdown
07:37:13 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
07:37:13 Collecting importlib-metadata>=4.4 (from markdown)
07:37:13 Using cached importlib_metadata-7.0.2-py3-none-any.whl.metadata (4.6 kB)
07:37:13 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
07:37:13 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
07:37:13 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
07:37:13 Using cached importlib_metadata-7.0.2-py3-none-any.whl (24 kB)
07:37:13 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
07:37:13 Installing collected packages: zipp, importlib-metadata, markdown
07:37:13 Successfully installed importlib-metadata-7.0.2 markdown-3.6 zipp-3.18.1
07:37:13 + pip install reportlab
07:37:14 Collecting reportlab
07:37:14 Using cached reportlab-4.1.0-py3-none-any.whl.metadata (1.4 kB)
07:37:14 Collecting pillow>=9.0.0 (from reportlab)
07:37:14 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
07:37:14 Collecting chardet (from reportlab)
07:37:14 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
07:37:14 Using cached reportlab-4.1.0-py3-none-any.whl (1.9 MB)
07:37:14 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
07:37:14 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
07:37:14 Installing collected packages: pillow, chardet, reportlab
07:37:15 Successfully installed chardet-5.2.0 pillow-10.2.0 reportlab-4.1.0
07:37:16 + pip install omego
07:37:16 Collecting omego
07:37:16 Using cached omego-0.7.0-py3-none-any.whl
07:37:16 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
07:37:16 Collecting yaclifw>=0.1.1 (from omego)
07:37:16 Using cached yaclifw-0.2.0-py3-none-any.whl
07:37:16 Collecting six (from yaclifw>=0.1.1->omego)
07:37:16 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
07:37:16 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
07:37:16 Installing collected packages: six, yaclifw, omego
07:37:16 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
07:37:17 + pip install tables
07:37:17 Collecting tables
07:37:17 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
07:37:17 Collecting numpy>=1.19.0 (from tables)
07:37:17 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
07:37:17 Collecting numexpr>=2.6.2 (from tables)
07:37:17 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
07:37:17 Collecting packaging (from tables)
07:37:17 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
07:37:17 Collecting py-cpuinfo (from tables)
07:37:17 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
07:37:18 Collecting blosc2>=2.3.0 (from tables)
07:37:18 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
07:37:18 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
07:37:18 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
07:37:18 Collecting msgpack (from blosc2>=2.3.0->tables)
07:37:18 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
07:37:18 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
07:37:18 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
07:37:18 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
07:37:18 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
07:37:18 Using cached packaging-24.0-py3-none-any.whl (53 kB)
07:37:18 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
07:37:18 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
07:37:18 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
07:37:18 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
07:37:21 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
07:37:21 + pip install jinja2
07:37:22 Collecting jinja2
07:37:22 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
07:37:22 Collecting MarkupSafe>=2.0 (from jinja2)
07:37:22 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
07:37:22 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
07:37:22 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
07:37:22 Installing collected packages: MarkupSafe, jinja2
07:37:22 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
07:37:22 + pip install omero-py
07:37:23 Collecting omero-py
07:37:23 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
07:37:23 Collecting urllib3<2 (from omero-py)
07:37:23 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
07:37:23 Collecting appdirs (from omero-py)
07:37:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
07:37:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
07:37:23 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
07:37:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.2.0)
07:37:23 Collecting PyYAML (from omero-py)
07:37:23 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
07:37:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
07:37:23 Collecting requests (from omero-py)
07:37:23 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
07:37:23 Collecting portalocker (from omero-py)
07:37:23 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
07:37:23 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
07:37:23 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
07:37:23 Collecting idna<4,>=2.5 (from requests->omero-py)
07:37:23 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
07:37:23 Collecting certifi>=2017.4.17 (from requests->omero-py)
07:37:23 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
07:37:23 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
07:37:23 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
07:37:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
07:37:23 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
07:37:23 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
07:37:23 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
07:37:23 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
07:37:23 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
07:37:23 Using cached idna-3.6-py3-none-any.whl (61 kB)
07:37:24 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
07:37:26 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
07:37:26 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
07:37:26 Collecting omero-metadata
07:37:26 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-57lc1xp6/omero-metadata_e53471f0e3534c43b6f9a1ce7b28ff8d
07:37:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-57lc1xp6/omero-metadata_e53471f0e3534c43b6f9a1ce7b28ff8d
07:37:28 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit b7565ded6846dd0245a39241b440e1a5be134210
07:37:28 Installing build dependencies: started
07:37:29 Installing build dependencies: finished with status 'done'
07:37:29 Getting requirements to build wheel: started
07:37:29 Getting requirements to build wheel: finished with status 'done'
07:37:29 Installing backend dependencies: started
07:37:30 Installing backend dependencies: finished with status 'done'
07:37:30 Preparing metadata (pyproject.toml): started
07:37:30 Preparing metadata (pyproject.toml): finished with status 'done'
07:37:30 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.0)
07:37:30 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
07:37:30 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
07:37:31 Collecting pandas (from omero-metadata)
07:37:31 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
07:37:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
07:37:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
07:37:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
07:37:31 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
07:37:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.2.0)
07:37:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
07:37:31 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
07:37:31 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
07:37:31 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
07:37:31 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
07:37:31 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
07:37:31 Collecting pytz>=2020.1 (from pandas->omero-metadata)
07:37:31 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
07:37:31 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
07:37:31 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
07:37:31 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
07:37:31 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
07:37:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.6)
07:37:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
07:37:31 Using cached pandas-2.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB)
07:37:31 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
07:37:32 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
07:37:32 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
07:37:32 Building wheels for collected packages: omero-metadata
07:37:32 Building wheel for omero-metadata (pyproject.toml): started
07:37:32 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
07:37:32 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=f761e7eedeb7dd40a948ef533521e6459365cdcd23d2f9c87c3f63957caf1510
07:37:32 Stored in directory: /tmp/pip-ephem-wheel-cache-h395uxhe/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
07:37:32 Successfully built omero-metadata
07:37:32 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
07:37:37 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.1 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
07:37:37 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
07:37:38 Collecting omero-cli-render
07:37:38 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ypbzex0u/omero-cli-render_7f343d84072e49b3b0b6353e66e419da
07:37:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ypbzex0u/omero-cli-render_7f343d84072e49b3b0b6353e66e419da
07:37:39 Running command git checkout -b merge_ci --track origin/merge_ci
07:37:39 Switched to a new branch 'merge_ci'
07:37:39 branch 'merge_ci' set up to track 'origin/merge_ci'.
07:37:39 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 893d3c4d6403b666ac141e324f855c2b4175f247
07:37:39 Installing build dependencies: started
07:37:41 Installing build dependencies: finished with status 'done'
07:37:41 Getting requirements to build wheel: started
07:37:41 Getting requirements to build wheel: finished with status 'done'
07:37:41 Installing backend dependencies: started
07:37:42 Installing backend dependencies: finished with status 'done'
07:37:42 Preparing metadata (pyproject.toml): started
07:37:42 Preparing metadata (pyproject.toml): finished with status 'done'
07:37:42 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
07:37:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.0)
07:37:42 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
07:37:42 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
07:37:42 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
07:37:42 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
07:37:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.2.0)
07:37:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
07:37:42 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
07:37:42 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
07:37:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
07:37:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.6)
07:37:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
07:37:42 Building wheels for collected packages: omero-cli-render
07:37:42 Building wheel for omero-cli-render (pyproject.toml): started
07:37:42 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
07:37:42 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=871436264157ac760722fbee23df1b191d52d36f0a165f5f4b6407734b6e8292
07:37:42 Stored in directory: /tmp/pip-ephem-wheel-cache-gdcyx617/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
07:37:42 Successfully built omero-cli-render
07:37:43 Installing collected packages: omero-cli-render
07:37:43 Successfully installed omero-cli-render-0.8.1.dev0
07:37:43 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
07:37:43 Collecting omero-cli-duplicate
07:37:43 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-cbqeufxw/omero-cli-duplicate_5085f1fd9b4b41e58c3259e37ab8cd2d
07:37:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-cbqeufxw/omero-cli-duplicate_5085f1fd9b4b41e58c3259e37ab8cd2d
07:37:44 Running command git checkout -b merge_ci --track origin/merge_ci
07:37:45 Switched to a new branch 'merge_ci'
07:37:45 branch 'merge_ci' set up to track 'origin/merge_ci'.
07:37:45 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 1bf3e75187fb609b30478610750cc394889da0b5
07:37:45 Installing build dependencies: started
07:37:46 Installing build dependencies: finished with status 'done'
07:37:46 Getting requirements to build wheel: started
07:37:46 Getting requirements to build wheel: finished with status 'done'
07:37:46 Installing backend dependencies: started
07:37:47 Installing backend dependencies: finished with status 'done'
07:37:47 Preparing metadata (pyproject.toml): started
07:37:47 Preparing metadata (pyproject.toml): finished with status 'done'
07:37:47 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.0)
07:37:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
07:37:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
07:37:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
07:37:47 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
07:37:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.2.0)
07:37:47 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
07:37:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
07:37:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
07:37:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
07:37:48 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
07:37:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.6)
07:37:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
07:37:48 Building wheels for collected packages: omero-cli-duplicate
07:37:48 Building wheel for omero-cli-duplicate (pyproject.toml): started
07:37:48 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
07:37:48 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=949ba833a59b3cee5e1857c36ca6dd11e93c662b709eac3881cf8fd244a35ae2
07:37:48 Stored in directory: /tmp/pip-ephem-wheel-cache-fp9d_t1v/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
07:37:48 Successfully built omero-cli-duplicate
07:37:48 Installing collected packages: omero-cli-duplicate
07:37:48 Successfully installed omero-cli-duplicate-0.4.1.dev0
07:37:48 + pip install omero-certificates
07:37:49 Collecting omero-certificates
07:37:49 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
07:37:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.0)
07:37:49 Collecting distro==1.8.0 (from omero-certificates)
07:37:49 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
07:37:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
07:37:49 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
07:37:49 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
07:37:49 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
07:37:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.2.0)
07:37:49 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
07:37:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
07:37:49 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
07:37:49 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
07:37:49 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
07:37:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.6)
07:37:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
07:37:49 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
07:37:49 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
07:37:49 Installing collected packages: distro, omero-certificates
07:37:49 Successfully installed distro-1.8.0 omero-certificates-0.3.2
07:37:49 + for x in *.tar.gz
07:37:49 + pip install -U omero-dropbox-5.6.3.dev0.tar.gz
07:37:50 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
07:37:50 Installing build dependencies: started
07:37:51 Installing build dependencies: finished with status 'done'
07:37:51 Getting requirements to build wheel: started
07:37:51 Getting requirements to build wheel: finished with status 'done'
07:37:51 Installing backend dependencies: started
07:37:52 Installing backend dependencies: finished with status 'done'
07:37:52 Preparing metadata (pyproject.toml): started
07:37:52 Preparing metadata (pyproject.toml): finished with status 'done'
07:37:52 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.0)
07:37:52 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
07:37:52 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
07:37:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
07:37:52 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
07:37:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.2.0)
07:37:52 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
07:37:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
07:37:52 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
07:37:52 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
07:37:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
07:37:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.6)
07:37:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
07:37:53 Building wheels for collected packages: omero-dropbox
07:37:53 Building wheel for omero-dropbox (pyproject.toml): started
07:37:53 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
07:37:53 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=f65ea33d05697b32d954038c63081ce91bcfba9336687489183eec61180ffc3c
07:37:53 Stored in directory: /home/omero/.cache/pip/wheels/a5/63/29/4452e52704e5ad491f397a0013b20ebb9d413ceb110f8101d1
07:37:53 Successfully built omero-dropbox
07:37:53 Installing collected packages: omero-dropbox
07:37:53 Successfully installed omero-dropbox-5.6.3.dev0
07:37:53 + for x in *.tar.gz
07:37:53 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
07:37:53 Processing ./omero_marshal-0.9.1.dev0.tar.gz
07:37:53 Installing build dependencies: started
07:37:55 Installing build dependencies: finished with status 'done'
07:37:55 Getting requirements to build wheel: started
07:37:55 Getting requirements to build wheel: finished with status 'done'
07:37:55 Installing backend dependencies: started
07:37:56 Installing backend dependencies: finished with status 'done'
07:37:56 Preparing metadata (pyproject.toml): started
07:37:56 Preparing metadata (pyproject.toml): finished with status 'done'
07:37:56 Building wheels for collected packages: omero_marshal
07:37:56 Building wheel for omero_marshal (pyproject.toml): started
07:37:57 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
07:37:57 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=3aa57ee5e4afcf51e5698d89d5ae6b7bd20eee10c081508234a1bc4e248c7df6
07:37:57 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
07:37:57 Successfully built omero_marshal
07:37:57 Installing collected packages: omero_marshal
07:37:57 Successfully installed omero_marshal-0.9.1.dev0
07:37:57 + for x in *.tar.gz
07:37:57 + pip install -U omero-py-5.19.1.dev0.tar.gz
07:37:57 Processing ./omero-py-5.19.1.dev0.tar.gz
07:37:58 Installing build dependencies: started
07:37:59 Installing build dependencies: finished with status 'done'
07:37:59 Getting requirements to build wheel: started
07:38:00 Getting requirements to build wheel: finished with status 'done'
07:38:00 Installing backend dependencies: started
07:38:00 Installing backend dependencies: finished with status 'done'
07:38:00 Preparing metadata (pyproject.toml): started
07:38:01 Preparing metadata (pyproject.toml): finished with status 'done'
07:38:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
07:38:01 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
07:38:01 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
07:38:01 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
07:38:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
07:38:01 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
07:38:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
07:38:01 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
07:38:01 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
07:38:01 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
07:38:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
07:38:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
07:38:01 Building wheels for collected packages: omero-py
07:38:01 Building wheel for omero-py (pyproject.toml): started
07:38:02 Building wheel for omero-py (pyproject.toml): finished with status 'done'
07:38:02 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781647 sha256=45e525a2873ff8bd9a8f821e1372770cd901fa0b30cdc651695f42d02d1bbc7a
07:38:02 Stored in directory: /home/omero/.cache/pip/wheels/52/ce/ea/f5d1427ab67c2783e3f124f0ebf8311109c5ac331893a591ad
07:38:02 Successfully built omero-py
07:38:02 Installing collected packages: omero-py
07:38:02 Attempting uninstall: omero-py
07:38:02 Found existing installation: omero-py 5.19.0
07:38:02 Uninstalling omero-py-5.19.0:
07:38:02 Successfully uninstalled omero-py-5.19.0
07:38:04 Successfully installed omero-py-5.19.1.dev0
07:38:04 + for x in *.tar.gz
07:38:04 + pip install -U omero-scripts-5.8.1.dev0.tar.gz
07:38:05 Processing ./omero-scripts-5.8.1.dev0.tar.gz
07:38:05 Installing build dependencies: started
07:38:06 Installing build dependencies: finished with status 'done'
07:38:06 Getting requirements to build wheel: started
07:38:07 Getting requirements to build wheel: finished with status 'done'
07:38:07 Installing backend dependencies: started
07:38:08 Installing backend dependencies: finished with status 'done'
07:38:08 Preparing metadata (pyproject.toml): started
07:38:08 Preparing metadata (pyproject.toml): finished with status 'done'
07:38:08 Building wheels for collected packages: omero-scripts
07:38:08 Building wheel for omero-scripts (pyproject.toml): started
07:38:08 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
07:38:08 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=d95ecc8449c9c00d32e5eb0054f2d2d96435d092b315c2a1d84ef2af3494de4a
07:38:08 Stored in directory: /home/omero/.cache/pip/wheels/ef/a0/80/e3393129cedc64a3ad2b8c2fa437d83a3d318cba65d425f5cf
07:38:08 Successfully built omero-scripts
07:38:08 Installing collected packages: omero-scripts
07:38:08 Successfully installed omero-scripts-5.8.1.dev0
07:38:08 + for x in *.tar.gz
07:38:08 + pip install -U omero-web-5.25.1.dev0.tar.gz
07:38:09 Processing ./omero-web-5.25.1.dev0.tar.gz
07:38:09 Installing build dependencies: started
07:38:11 Installing build dependencies: finished with status 'done'
07:38:11 Getting requirements to build wheel: started
07:38:11 Getting requirements to build wheel: finished with status 'done'
07:38:11 Installing backend dependencies: started
07:38:12 Installing backend dependencies: finished with status 'done'
07:38:12 Preparing metadata (pyproject.toml): started
07:38:12 Preparing metadata (pyproject.toml): finished with status 'done'
07:38:12 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
07:38:12 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
07:38:12 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
07:38:12 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
07:38:12 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
07:38:12 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
07:38:12 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
07:38:12 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
07:38:12 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
07:38:12 Collecting django-csp (from omero-web==5.25.1.dev0)
07:38:12 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
07:38:13 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
07:38:13 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
07:38:13 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
07:38:13 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
07:38:13 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
07:38:13 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
07:38:13 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
07:38:13 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
07:38:13 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
07:38:13 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
07:38:13 Using cached asgiref-3.7.2-py3-none-any.whl.metadata (9.2 kB)
07:38:13 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
07:38:13 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
07:38:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
07:38:13 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
07:38:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
07:38:13 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
07:38:13 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
07:38:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
07:38:13 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
07:38:13 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
07:38:13 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
07:38:13 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
07:38:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
07:38:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
07:38:13 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
07:38:13 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
07:38:13 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
07:38:13 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
07:38:13 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
07:38:13 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
07:38:13 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
07:38:13 Using cached asgiref-3.7.2-py3-none-any.whl (24 kB)
07:38:13 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
07:38:13 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
07:38:13 Building wheels for collected packages: omero-web
07:38:13 Building wheel for omero-web (pyproject.toml): started
07:38:14 Building wheel for omero-web (pyproject.toml): finished with status 'done'
07:38:15 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769827 sha256=5504ce48b574c0be8e6dde2c53828ade754f318d8cb68e89a2039499f1df72b9
07:38:15 Stored in directory: /home/omero/.cache/pip/wheels/c5/4f/aa/011f4ecfdcda915571d213b068a736fbddf1b36b2e590de11a
07:38:15 Successfully built omero-web
07:38:15 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
07:38:18 Successfully installed Django-4.2.11 asgiref-3.7.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
07:38:18 + omero config set omero.db.name OMERO-server
07:38:19 + omero config set omero.db.host pg
07:38:20 + omero config set omero.db.user postgres
07:38:22 + omero config set omero.data.dir /home/omero/omero-server-data
07:38:23 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
07:38:24 + omero config set omero.db.poolsize 25
07:38:25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
07:38:27 + omero config set omero.security.trustStorePassword changeit
07:38:28 + omero config set omero.mail.config true
07:38:29 + //omero config set omero.mail.from your_address
07:38:29 /tmp/jenkins5909130259172565140.sh: line 55: //omero: No such file or directory
07:38:29 Build step 'Execute shell' marked build as failure
07:38:29 Finished: FAILURE
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