16:32:23 Started by user devspace
16:32:23 Running as SYSTEM
16:32:24 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
16:32:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11376901210670232934.sh
16:32:24 + source /home/settings.env
16:32:24 ++ OMERO_DB_HOST=pg
16:32:24 ++ OMERO_DB_USER=postgres
16:32:24 ++ OMERO_DB_PASS=
16:32:24 ++ OMERO_ROOT_PASS=omero
16:32:24 ++ OMERO_DATA_DIR=/OMERO
16:32:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:32:24 + OMERO_DB_NAME=OMERO-server
16:32:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
16:32:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:32:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:32:24 + OMERO_DATA_DIR=/home/omero/omero-server-data
16:32:24 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
16:32:24 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
16:32:24 ++ deactivate nondestructive
16:32:24 ++ '[' -n '' ']'
16:32:24 ++ '[' -n '' ']'
16:32:24 ++ '[' -n /bin/bash -o -n '' ']'
16:32:24 ++ hash -r
16:32:24 ++ '[' -n '' ']'
16:32:24 ++ unset VIRTUAL_ENV
16:32:24 ++ '[' '!' nondestructive = nondestructive ']'
16:32:24 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
16:32:24 ++ export VIRTUAL_ENV
16:32:24 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:32:24 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:32:24 ++ export PATH
16:32:24 ++ '[' -n '' ']'
16:32:24 ++ '[' -z '' ']'
16:32:24 ++ _OLD_VIRTUAL_PS1=
16:32:24 ++ PS1='(.venv3) '
16:32:24 ++ export PS1
16:32:24 ++ '[' -n /bin/bash -o -n '' ']'
16:32:24 ++ hash -r
16:32:24 + omero admin stop
16:32:32 Waiting on shutdown. Use CTRL-C to exit
16:32:32 .+ sleep 5
16:32:48 + deactivate
16:32:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
16:32:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:32:48 + export PATH
16:32:48 + unset _OLD_VIRTUAL_PATH
16:32:48 + '[' -n '' ']'
16:32:48 + '[' -n /bin/bash -o -n '' ']'
16:32:48 + hash -r
16:32:48 + '[' -n '' ']'
16:32:48 + unset VIRTUAL_ENV
16:32:48 + '[' '!' '' = nondestructive ']'
16:32:48 + unset -f deactivate
16:32:48 + rm -rf /home/omero/workspace/OMERO-server/.venv3
16:32:52 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
16:32:55 + '[' false = true ']'
16:32:55 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
16:32:55 Skipping PURGE_DATA:CleanDbAndRepo
16:32:55 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
16:32:58 Copied 1 artifact from "OMERO-build" build number 48
16:32:58 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 48
16:32:58 Copied 2 artifacts from "OMERO-build-build" build number 49
16:32:58 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2816054498799233360.sh
16:32:58 + source /home/settings.env
16:32:58 ++ OMERO_DB_HOST=pg
16:32:58 ++ OMERO_DB_USER=postgres
16:32:58 ++ OMERO_DB_PASS=
16:32:58 ++ OMERO_ROOT_PASS=omero
16:32:58 ++ OMERO_DATA_DIR=/OMERO
16:32:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:32:58 + OMERO_DB_NAME=OMERO-server
16:32:58 + OMERO_DATA_DIR=/home/omero/omero-server-data
16:32:58 + mkdir -p /home/omero/omero-server-data
16:32:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
16:32:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:32:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
16:32:58 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
16:32:58 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
16:32:58 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
16:32:58 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
16:32:58 ++ ls OMERO.server-5.6.3-458-da8aba771d-ice36.zip
16:32:58 + ZIP=OMERO.server-5.6.3-458-da8aba771d-ice36.zip
16:32:58 + '[' '!' -z '' ']'
16:32:58 + DIST=OMERO.server-5.6.3-458-da8aba771d-ice36
16:32:58 + unzip OMERO.server-5.6.3-458-da8aba771d-ice36.zip
16:32:58 Archive: OMERO.server-5.6.3-458-da8aba771d-ice36.zip
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/grid/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/profiles/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/error/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/janelia/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/ncsa_paledit/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/wcif/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/analysis_scripts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/annotation_scripts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/export_scripts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/figure_scripts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/import_scripts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/util_scripts/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__1/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__10/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__11/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__2/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__3/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__4/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__5/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__6/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__7/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__8/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__9/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__4/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__5/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__6/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__7/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.1__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__1/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__2/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__3/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/
16:32:58 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/var/
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/LICENSE.txt
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/backup.cfg
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/mail-senders.example
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/mail-server.example
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/build.properties
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/env.bat
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/env.sh
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/hibernate.properties
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/ice.config
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-cli.xml
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-indexing-cli.xml
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-indexing.xml
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback.xml
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/mime.types
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/node1.cfg
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/node2.cfg
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/omero.properties
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/profiles/psql
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/rollover.cfg
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/Windows.cfg
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/error/maintainance.html
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/README
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/default.xml
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/templates.xml
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/windefault.xml
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/ice.config
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/internal.cfg
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/master.cfg
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/robot.template
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/testdropbox.config
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/history.rst
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/OMEZarrReader.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/activation.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aggdesigner-algorithm.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aircompressor.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/annotations.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/antlr.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aopalliance.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/avatica-core.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/avatica-metrics.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-core.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-kms.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-s3.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/base.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-all.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-anim.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-awt-util.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-bridge.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-codec.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-constants.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-css.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-dom.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-ext.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-extension.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-gui-util.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-gvt.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-i18n.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-parser.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-rasterizer-ext.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-rasterizer.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-script.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-slideshow.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-squiggle-ext.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-squiggle.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svg-dom.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgbrowser.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svggen.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgpp.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgrasterizer.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-swing.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-transcoder.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-ttf2svg.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-util.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-xml.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/btm.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/bufr.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/c3p0.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/calcite-core.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/calcite-linq4j.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/cdm-core.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/checker-qual.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-beanutils.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-codec.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-collections.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-collections4.jar
16:32:58 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-compiler.jar
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16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jtidy.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-3.0.txt
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16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v2.1.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v3.0.txt
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16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/mit.txt
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16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/npl-1_1.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/path.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/pil.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/postgresql.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/psf-v2.0.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/psf-v2.5.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/scons.txt
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16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/tablelayout.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/which.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/zlib-libpng.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/zpl-v2.1.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/README.txt
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/Makefile
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/current.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/enums.py
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
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16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/psql-header.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/schema.sql
16:33:00 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/views.sql
16:33:00 + rm -f OMERO.server-5.6.3-458-da8aba771d-ice36.zip
16:33:00 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-458-da8aba771d-ice36 /home/omero/workspace/OMERO-server/OMERO.server
16:33:00 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
16:33:00 ++ deactivate nondestructive
16:33:00 ++ '[' -n '' ']'
16:33:00 ++ '[' -n '' ']'
16:33:00 ++ '[' -n /bin/bash -o -n '' ']'
16:33:00 ++ hash -r
16:33:00 ++ '[' -n '' ']'
16:33:00 ++ unset VIRTUAL_ENV
16:33:00 ++ '[' '!' nondestructive = nondestructive ']'
16:33:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
16:33:00 ++ export VIRTUAL_ENV
16:33:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:33:00 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:33:00 ++ export PATH
16:33:00 ++ '[' -n '' ']'
16:33:00 ++ '[' -z '' ']'
16:33:00 ++ _OLD_VIRTUAL_PS1=
16:33:00 ++ PS1='(.venv3) '
16:33:00 ++ export PS1
16:33:00 ++ '[' -n /bin/bash -o -n '' ']'
16:33:00 ++ hash -r
16:33:00 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
16:33:01 Collecting zeroc-ice==3.6.5
16:33:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
16:33:03 Installing collected packages: zeroc-ice
16:33:04 Successfully installed zeroc-ice-3.6.5
16:33:04 + pip install -U pip future
16:33:04 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
16:33:04 Collecting pip
16:33:05 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
16:33:05 Collecting future
16:33:05 Using cached future-1.0.0-py3-none-any.whl (491 kB)
16:33:05 Installing collected packages: pip, future
16:33:05 Attempting uninstall: pip
16:33:05 Found existing installation: pip 21.2.3
16:33:05 Uninstalling pip-21.2.3:
16:33:05 Successfully uninstalled pip-21.2.3
16:33:06 Successfully installed future-1.0.0 pip-24.0
16:33:06 + pip install markdown
16:33:07 Collecting markdown
16:33:07 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
16:33:07 Collecting importlib-metadata>=4.4 (from markdown)
16:33:07 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
16:33:07 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
16:33:07 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
16:33:07 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
16:33:07 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
16:33:07 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
16:33:07 Installing collected packages: zipp, importlib-metadata, markdown
16:33:07 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
16:33:07 + pip install reportlab
16:33:08 Collecting reportlab
16:33:08 Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB)
16:33:08 Collecting pillow>=9.0.0 (from reportlab)
16:33:08 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
16:33:09 Collecting chardet (from reportlab)
16:33:09 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
16:33:09 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB)
16:33:09 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
16:33:09 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
16:33:09 Installing collected packages: pillow, chardet, reportlab
16:33:10 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0
16:33:10 + pip install omego
16:33:11 Collecting omego
16:33:11 Using cached omego-0.7.0-py3-none-any.whl
16:33:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
16:33:11 Collecting yaclifw>=0.1.1 (from omego)
16:33:11 Using cached yaclifw-0.2.0-py3-none-any.whl
16:33:11 Collecting six (from yaclifw>=0.1.1->omego)
16:33:11 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
16:33:11 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
16:33:11 Installing collected packages: six, yaclifw, omego
16:33:12 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
16:33:12 + pip install tables
16:33:12 Collecting tables
16:33:12 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
16:33:12 Collecting numpy>=1.19.0 (from tables)
16:33:12 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
16:33:12 Collecting numexpr>=2.6.2 (from tables)
16:33:12 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
16:33:13 Collecting packaging (from tables)
16:33:13 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
16:33:13 Collecting py-cpuinfo (from tables)
16:33:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
16:33:13 Collecting blosc2>=2.3.0 (from tables)
16:33:13 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
16:33:13 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
16:33:13 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
16:33:13 Collecting msgpack (from blosc2>=2.3.0->tables)
16:33:13 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
16:33:13 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
16:33:13 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
16:33:13 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB)
16:33:13 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
16:33:13 Using cached packaging-24.0-py3-none-any.whl (53 kB)
16:33:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
16:33:13 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
16:33:13 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
16:33:13 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
16:33:16 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
16:33:16 + pip install jinja2
16:33:17 Collecting jinja2
16:33:17 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
16:33:17 Collecting MarkupSafe>=2.0 (from jinja2)
16:33:17 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
16:33:17 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
16:33:17 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
16:33:17 Installing collected packages: MarkupSafe, jinja2
16:33:17 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
16:33:17 + pip install omero-py
16:33:18 Collecting omero-py
16:33:18 Using cached omero_py-5.19.2-py3-none-any.whl.metadata (6.6 kB)
16:33:18 Collecting urllib3<2 (from omero-py)
16:33:18 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
16:33:18 Collecting appdirs (from omero-py)
16:33:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
16:33:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
16:33:18 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
16:33:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0)
16:33:18 Collecting PyYAML (from omero-py)
16:33:18 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
16:33:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
16:33:18 Collecting requests (from omero-py)
16:33:18 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
16:33:18 Collecting portalocker (from omero-py)
16:33:18 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
16:33:18 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
16:33:18 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
16:33:18 Collecting idna<4,>=2.5 (from requests->omero-py)
16:33:18 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
16:33:18 Collecting certifi>=2017.4.17 (from requests->omero-py)
16:33:18 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
16:33:18 Using cached omero_py-5.19.2-py3-none-any.whl (2.8 MB)
16:33:18 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
16:33:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
16:33:18 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
16:33:18 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
16:33:18 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
16:33:18 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
16:33:18 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
16:33:19 Using cached idna-3.7-py3-none-any.whl (66 kB)
16:33:19 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
16:33:21 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.2 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
16:33:21 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
16:33:21 Collecting omero-metadata
16:33:21 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-ze9taha7/omero-metadata_4d829f9bac9644cfa81c92f5e36af2c3
16:33:21 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-ze9taha7/omero-metadata_4d829f9bac9644cfa81c92f5e36af2c3
16:33:22 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit dac98655f76cdf25be7dc6319cc675b90ef5b1a1
16:33:22 Installing build dependencies: started
16:33:24 Installing build dependencies: finished with status 'done'
16:33:24 Getting requirements to build wheel: started
16:33:24 Getting requirements to build wheel: finished with status 'done'
16:33:24 Installing backend dependencies: started
16:33:25 Installing backend dependencies: finished with status 'done'
16:33:25 Preparing metadata (pyproject.toml): started
16:33:25 Preparing metadata (pyproject.toml): finished with status 'done'
16:33:25 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.2)
16:33:25 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
16:33:25 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
16:33:25 Collecting pandas (from omero-metadata)
16:33:25 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
16:33:25 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
16:33:25 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
16:33:25 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
16:33:25 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
16:33:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0)
16:33:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
16:33:25 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
16:33:25 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
16:33:25 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
16:33:26 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
16:33:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
16:33:26 Collecting pytz>=2020.1 (from pandas->omero-metadata)
16:33:26 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
16:33:26 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
16:33:26 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
16:33:26 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
16:33:26 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
16:33:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
16:33:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
16:33:26 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
16:33:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
16:33:26 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
16:33:26 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
16:33:26 Building wheels for collected packages: omero-metadata
16:33:26 Building wheel for omero-metadata (pyproject.toml): started
16:33:26 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
16:33:26 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=d3062aaeab5a87fa4b47eb87a3e1855d984e2b1edd41c546956d476dda4a5655
16:33:26 Stored in directory: /tmp/pip-ephem-wheel-cache-k5s29kis/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
16:33:26 Successfully built omero-metadata
16:33:26 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
16:33:31 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
16:33:31 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
16:33:32 Collecting omero-cli-render
16:33:32 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-63sdwktq/omero-cli-render_fd644e77f485435eba8eb74f165577b5
16:33:32 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-63sdwktq/omero-cli-render_fd644e77f485435eba8eb74f165577b5
16:33:33 Running command git checkout -b merge_ci --track origin/merge_ci
16:33:33 Switched to a new branch 'merge_ci'
16:33:33 branch 'merge_ci' set up to track 'origin/merge_ci'.
16:33:33 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 65fb948a5d5013aafdf54e9f53561dda61855e8b
16:33:33 Installing build dependencies: started
16:33:35 Installing build dependencies: finished with status 'done'
16:33:35 Getting requirements to build wheel: started
16:33:35 Getting requirements to build wheel: finished with status 'done'
16:33:35 Installing backend dependencies: started
16:33:36 Installing backend dependencies: finished with status 'done'
16:33:36 Preparing metadata (pyproject.toml): started
16:33:36 Preparing metadata (pyproject.toml): finished with status 'done'
16:33:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
16:33:36 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.2)
16:33:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
16:33:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
16:33:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
16:33:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
16:33:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0)
16:33:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
16:33:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
16:33:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
16:33:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
16:33:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
16:33:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
16:33:36 Building wheels for collected packages: omero-cli-render
16:33:36 Building wheel for omero-cli-render (pyproject.toml): started
16:33:37 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
16:33:37 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=66c6bb1407614452b5201ed60ef236c119c47e67f421525a1126c995161f00c6
16:33:37 Stored in directory: /tmp/pip-ephem-wheel-cache-nnhmq3v7/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
16:33:37 Successfully built omero-cli-render
16:33:37 Installing collected packages: omero-cli-render
16:33:37 Successfully installed omero-cli-render-0.8.1.dev0
16:33:37 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
16:33:37 Collecting omero-cli-duplicate
16:33:37 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-5ytht_c5/omero-cli-duplicate_92750e1f5b1b422da7303c8708792270
16:33:37 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-5ytht_c5/omero-cli-duplicate_92750e1f5b1b422da7303c8708792270
16:33:38 Running command git checkout -b merge_ci --track origin/merge_ci
16:33:39 Switched to a new branch 'merge_ci'
16:33:39 branch 'merge_ci' set up to track 'origin/merge_ci'.
16:33:39 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 48685a845b3a0e5d45076fad08a70428788f6337
16:33:39 Installing build dependencies: started
16:33:40 Installing build dependencies: finished with status 'done'
16:33:40 Getting requirements to build wheel: started
16:33:40 Getting requirements to build wheel: finished with status 'done'
16:33:40 Installing backend dependencies: started
16:33:41 Installing backend dependencies: finished with status 'done'
16:33:41 Preparing metadata (pyproject.toml): started
16:33:41 Preparing metadata (pyproject.toml): finished with status 'done'
16:33:41 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.2)
16:33:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
16:33:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
16:33:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
16:33:41 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
16:33:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0)
16:33:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
16:33:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
16:33:41 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
16:33:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
16:33:42 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
16:33:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
16:33:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
16:33:42 Building wheels for collected packages: omero-cli-duplicate
16:33:42 Building wheel for omero-cli-duplicate (pyproject.toml): started
16:33:42 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
16:33:42 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=d848baa10f15f3fd0f2374664b4e2a24552eaa493f759a4ffad0a60ae16818d6
16:33:42 Stored in directory: /tmp/pip-ephem-wheel-cache-i3rkbhb_/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
16:33:42 Successfully built omero-cli-duplicate
16:33:42 Installing collected packages: omero-cli-duplicate
16:33:42 Successfully installed omero-cli-duplicate-0.4.1.dev0
16:33:42 + pip install omero-certificates
16:33:43 Collecting omero-certificates
16:33:43 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
16:33:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.2)
16:33:43 Collecting distro==1.8.0 (from omero-certificates)
16:33:43 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
16:33:43 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
16:33:43 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
16:33:43 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
16:33:43 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
16:33:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0)
16:33:43 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
16:33:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
16:33:43 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
16:33:43 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
16:33:43 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
16:33:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
16:33:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
16:33:43 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
16:33:43 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
16:33:43 Installing collected packages: distro, omero-certificates
16:33:43 Successfully installed distro-1.8.0 omero-certificates-0.3.2
16:33:43 + for x in *.tar.gz
16:33:43 + pip install -U omero_dropbox-5.6.3.dev0.tar.gz
16:33:43 Processing ./omero_dropbox-5.6.3.dev0.tar.gz
16:33:43 Installing build dependencies: started
16:33:45 Installing build dependencies: finished with status 'done'
16:33:45 Getting requirements to build wheel: started
16:33:45 Getting requirements to build wheel: finished with status 'done'
16:33:45 Installing backend dependencies: started
16:33:46 Installing backend dependencies: finished with status 'done'
16:33:46 Preparing metadata (pyproject.toml): started
16:33:46 Preparing metadata (pyproject.toml): finished with status 'done'
16:33:46 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.2)
16:33:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
16:33:46 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
16:33:46 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
16:33:46 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
16:33:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0)
16:33:46 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
16:33:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
16:33:46 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
16:33:46 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
16:33:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
16:33:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.7)
16:33:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
16:33:46 Building wheels for collected packages: omero-dropbox
16:33:46 Building wheel for omero-dropbox (pyproject.toml): started
16:33:47 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
16:33:47 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=5ba5556fa636c25d736f974959d4fdebdf0ee0f63036f5e7a7d583d16acae71d
16:33:47 Stored in directory: /home/omero/.cache/pip/wheels/f4/cc/2d/e8cb90723edb0dd09a23d7e300334e5aa51dc6579befeaf8c6
16:33:47 Successfully built omero-dropbox
16:33:47 Installing collected packages: omero-dropbox
16:33:47 Successfully installed omero-dropbox-5.6.3.dev0
16:33:47 + for x in *.tar.gz
16:33:47 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
16:33:47 Processing ./omero_marshal-0.9.1.dev0.tar.gz
16:33:47 Installing build dependencies: started
16:33:49 Installing build dependencies: finished with status 'done'
16:33:49 Getting requirements to build wheel: started
16:33:49 Getting requirements to build wheel: finished with status 'done'
16:33:49 Installing backend dependencies: started
16:33:50 Installing backend dependencies: finished with status 'done'
16:33:50 Preparing metadata (pyproject.toml): started
16:33:50 Preparing metadata (pyproject.toml): finished with status 'done'
16:33:50 Building wheels for collected packages: omero_marshal
16:33:50 Building wheel for omero_marshal (pyproject.toml): started
16:33:51 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
16:33:51 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=e813feccbbc02a8d328b46bf1c302c7f4844b71b3dd121fbec65caa87da0662e
16:33:51 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
16:33:51 Successfully built omero_marshal
16:33:51 Installing collected packages: omero_marshal
16:33:51 Successfully installed omero_marshal-0.9.1.dev0
16:33:51 + for x in *.tar.gz
16:33:51 + pip install -U omero_py-5.19.3.dev0.tar.gz
16:33:51 Processing ./omero_py-5.19.3.dev0.tar.gz
16:33:52 Installing build dependencies: started
16:33:53 Installing build dependencies: finished with status 'done'
16:33:53 Getting requirements to build wheel: started
16:33:54 Getting requirements to build wheel: finished with status 'done'
16:33:54 Installing backend dependencies: started
16:33:54 Installing backend dependencies: finished with status 'done'
16:33:54 Preparing metadata (pyproject.toml): started
16:33:55 Preparing metadata (pyproject.toml): finished with status 'done'
16:33:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.18)
16:33:55 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.4.4)
16:33:55 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.0.0)
16:33:55 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.4)
16:33:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (10.3.0)
16:33:55 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (6.0.1)
16:33:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (3.6.5)
16:33:55 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.31.0)
16:33:55 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.8.2)
16:33:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.3.2)
16:33:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.7)
16:33:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (2024.2.2)
16:33:55 Building wheels for collected packages: omero-py
16:33:55 Building wheel for omero-py (pyproject.toml): started
16:33:56 Building wheel for omero-py (pyproject.toml): finished with status 'done'
16:33:56 Created wheel for omero-py: filename=omero_py-5.19.3.dev0-py3-none-any.whl size=2783096 sha256=db2b2c473ed89c5df683058200c3e5fb55449c510fa8db6d8e17fbdb71a2f6b3
16:33:56 Stored in directory: /home/omero/.cache/pip/wheels/da/30/d3/f2a83bdd6a0fbad84aa00dad9eb9431eedebb0e1310be5dd41
16:33:56 Successfully built omero-py
16:33:56 Installing collected packages: omero-py
16:33:56 Attempting uninstall: omero-py
16:33:56 Found existing installation: omero-py 5.19.2
16:33:56 Uninstalling omero-py-5.19.2:
16:33:56 Successfully uninstalled omero-py-5.19.2
16:33:58 Successfully installed omero-py-5.19.3.dev0
16:33:58 + for x in *.tar.gz
16:33:58 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
16:33:59 Processing ./omero_scripts-5.8.3.dev0.tar.gz
16:33:59 Installing build dependencies: started
16:34:01 Installing build dependencies: finished with status 'done'
16:34:01 Getting requirements to build wheel: started
16:34:01 Getting requirements to build wheel: finished with status 'done'
16:34:01 Installing backend dependencies: started
16:34:02 Installing backend dependencies: finished with status 'done'
16:34:02 Preparing metadata (pyproject.toml): started
16:34:02 Preparing metadata (pyproject.toml): finished with status 'done'
16:34:02 Building wheels for collected packages: omero-scripts
16:34:02 Building wheel for omero-scripts (pyproject.toml): started
16:34:02 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
16:34:02 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=6e25553c0502f4420b5bcac52fa002d77d57536b39dacc776aa8353bbcd29f26
16:34:02 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
16:34:02 Successfully built omero-scripts
16:34:02 Installing collected packages: omero-scripts
16:34:02 Successfully installed omero-scripts-5.8.3.dev0
16:34:02 + for x in *.tar.gz
16:34:02 + pip install -U omero_web-5.25.1.dev0.tar.gz
16:34:03 Processing ./omero_web-5.25.1.dev0.tar.gz
16:34:03 Installing build dependencies: started
16:34:05 Installing build dependencies: finished with status 'done'
16:34:05 Getting requirements to build wheel: started
16:34:05 Getting requirements to build wheel: finished with status 'done'
16:34:05 Installing backend dependencies: started
16:34:06 Installing backend dependencies: finished with status 'done'
16:34:06 Preparing metadata (pyproject.toml): started
16:34:06 Preparing metadata (pyproject.toml): finished with status 'done'
16:34:06 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.3.dev0)
16:34:06 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
16:34:06 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
16:34:07 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
16:34:07 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
16:34:07 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
16:34:07 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
16:34:07 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
16:34:07 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
16:34:07 Collecting django-csp (from omero-web==5.25.1.dev0)
16:34:07 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
16:34:07 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
16:34:07 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
16:34:07 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
16:34:07 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
16:34:07 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
16:34:07 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0)
16:34:07 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
16:34:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
16:34:07 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
16:34:07 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
16:34:07 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
16:34:07 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
16:34:07 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
16:34:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
16:34:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
16:34:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
16:34:07 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
16:34:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
16:34:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
16:34:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
16:34:07 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
16:34:07 Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
16:34:08 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
16:34:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7)
16:34:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
16:34:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
16:34:08 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
16:34:08 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
16:34:08 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
16:34:08 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
16:34:08 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
16:34:08 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
16:34:08 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
16:34:08 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
16:34:08 Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
16:34:08 Building wheels for collected packages: omero-web
16:34:08 Building wheel for omero-web (pyproject.toml): started
16:34:09 Building wheel for omero-web (pyproject.toml): finished with status 'done'
16:34:09 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2768887 sha256=a0105803de8addf3d733385ef8e2a93d79250ba51f872aeb6265315bb90ce759
16:34:09 Stored in directory: /home/omero/.cache/pip/wheels/33/ba/09/ce4e387d041ff0c2197723e41a9f679d0a8e4d0d4f906c19c9
16:34:09 Successfully built omero-web
16:34:09 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
16:34:12 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.25.1.dev0 sqlparse-0.5.0 typing-extensions-4.11.0 whitenoise-6.6.0
16:34:12 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
16:34:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
16:34:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
16:34:12 --2024-05-01 16:34:12-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
16:34:13 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ...
16:34:13 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
16:34:13 HTTP request sent, awaiting response... 200 OK
16:34:13 Length: 94763 (93K) [text/plain]
16:34:13 Saving to: ‘Figure_To_Pdf.py’
16:34:13
16:34:13 0K .......... .......... .......... .......... .......... 54% 3.46M 0s
16:34:13 50K .......... .......... .......... .......... .. 100% 7.32M=0.02s
16:34:13
16:34:13 2024-05-01 16:34:13 (4.57 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763]
16:34:13
16:34:13 + chmod 755 Figure_To_Pdf.py
16:34:13 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
16:34:13 + omero config set omero.db.name OMERO-server
16:34:14 + omero config set omero.db.host pg
16:34:15 + omero config set omero.db.user postgres
16:34:17 + omero config set omero.data.dir /home/omero/omero-server-data
16:34:18 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
16:34:19 + omero config set omero.db.poolsize 25
16:34:20 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
16:34:22 + omero config set omero.security.trustStorePassword changeit
16:34:23 + omero config set omero.mail.config true
16:34:24 + omero config set omero.mail.from qa@openmicroscopy.org.uk
16:34:26 + omero config set omero.mail.host smtp.dundee.ac.uk
16:34:27 + omero certificates
16:34:28 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
16:34:28 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
16:34:28 + '[' false = true ']'
16:34:28 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
16:34:28 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
16:34:28 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
16:34:28 2024-05-01 16:34:28,872 [ omego.db] DEBUG dbcommand => upgrade
16:34:28 2024-05-01 16:34:28,872 [ omego.db] DEBUG dbhost => localhost
16:34:28 2024-05-01 16:34:28,872 [ omego.db] DEBUG dbname => OMERO-server
16:34:28 2024-05-01 16:34:28,872 [ omego.db] DEBUG dbpass => omero
16:34:28 2024-05-01 16:34:28,872 [ omego.db] DEBUG dbuser => omero
16:34:28 2024-05-01 16:34:28,872 [ omego.db] DEBUG rootpass => omero
16:34:28 2024-05-01 16:34:28,872 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
16:34:28 2024-05-01 16:34:28,872 [omego.extern] INFO Executing : omero version
16:34:29 OMERO.py version:
16:34:30 OMERO.server version:
16:34:30 5.6.3-458-da8aba771d-ice36
16:34:30 5.19.3.dev0
16:34:30 2024-05-01 16:34:30,221 [omego.extern] INFO Completed [1.348 s]
16:34:30 2024-05-01 16:34:30,221 [omego.extern] DEBUG Using omero CLI from omero
16:34:30 2024-05-01 16:34:30,221 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
16:34:30 2024-05-01 16:34:30,221 [omego.extern] INFO Running [current environment]: omero config get --show-password
16:34:30 2024-05-01 16:34:30,221 [omego.extern] INFO Executing : omero config get --show-password
16:34:31 2024-05-01 16:34:31,502 [omego.extern] INFO Completed [1.281 s]
16:34:31 2024-05-01 16:34:31,502 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
16:34:31 2024-05-01 16:34:31,502 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
16:34:31 2024-05-01 16:34:31,551 [omego.extern] INFO Completed [0.048 s]
16:34:31 2024-05-01 16:34:31,551 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
16:34:31 2024-05-01 16:34:31,551 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
16:34:31
16:34:31 2024-05-01 16:34:31,551 [omego.extern] INFO Running [current environment]: omero config get --show-password
16:34:31 2024-05-01 16:34:31,551 [omego.extern] INFO Executing : omero config get --show-password
16:34:32 2024-05-01 16:34:32,811 [omego.extern] INFO Completed [1.260 s]
16:34:32 2024-05-01 16:34:32,812 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
16:34:32 2024-05-01 16:34:32,812 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
16:34:32 2024-05-01 16:34:32,915 [omego.extern] INFO Completed [0.103 s]
16:34:32 2024-05-01 16:34:32,916 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.6") at port "5432".\n'
16:34:32 2024-05-01 16:34:32,916 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
16:34:32 2024-05-01 16:34:32,916 [omego.extern] INFO Running [current environment]: omero config get --show-password
16:34:32 2024-05-01 16:34:32,916 [omego.extern] INFO Executing : omero config get --show-password
16:34:34 2024-05-01 16:34:34,170 [omego.extern] INFO Completed [1.254 s]
16:34:34 2024-05-01 16:34:34,170 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
16:34:34 2024-05-01 16:34:34,171 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
16:34:34 2024-05-01 16:34:34,485 [omego.extern] INFO Completed [0.315 s]
16:34:34 2024-05-01 16:34:34,485 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
16:34:34 2024-05-01 16:34:34,485 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
16:34:34 2024-05-01 16:34:34,487 [ omego.db] INFO Database is already at OMERO5.4__0
16:34:34 + export LANG=en_US.UTF-8
16:34:34 + LANG=en_US.UTF-8
16:34:34 + export LANGUAGE=en_US:en
16:34:34 + LANGUAGE=en_US:en
16:34:34 + export LC_ALL=en_US.UTF-8
16:34:34 + LC_ALL=en_US.UTF-8
16:34:34 + BUILD_ID=DONT_KILL_ME
16:34:34 + omero admin start
16:34:42 No descriptor given. Using etc/grid/default.xml
16:34:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
16:34:44 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
16:34:44 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
16:34:44 Waiting on startup. Use CTRL-C to exit
16:34:44 ......Build was aborted
16:35:41 Aborted by devspace
16:35:41 Finished: ABORTED
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