11:20:55 Started by upstream project "Trigger" build number 158
11:20:55 originally caused by:
11:20:55 Started by user devspace
11:20:55 Running as SYSTEM
11:20:55 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
11:20:55 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7897934421916024249.sh
11:20:55 + source /home/settings.env
11:20:55 ++ OMERO_DB_HOST=pg
11:20:55 ++ OMERO_DB_USER=postgres
11:20:55 ++ OMERO_DB_PASS=
11:20:55 ++ OMERO_ROOT_PASS=omero
11:20:55 ++ OMERO_DATA_DIR=/OMERO
11:20:55 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:20:55 + OMERO_DB_NAME=OMERO-server
11:20:55 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
11:20:55 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:20:55 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:20:55 + OMERO_DATA_DIR=/home/omero/omero-server-data
11:20:55 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
11:20:55 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
11:20:55 ++ deactivate nondestructive
11:20:55 ++ '[' -n '' ']'
11:20:55 ++ '[' -n '' ']'
11:20:55 ++ hash -r
11:20:55 ++ '[' -n '' ']'
11:20:55 ++ unset VIRTUAL_ENV
11:20:55 ++ unset VIRTUAL_ENV_PROMPT
11:20:55 ++ '[' '!' nondestructive = nondestructive ']'
11:20:55 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
11:20:55 ++ export VIRTUAL_ENV
11:20:55 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:20:55 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:20:55 ++ export PATH
11:20:55 ++ '[' -n '' ']'
11:20:55 ++ '[' -z '' ']'
11:20:55 ++ _OLD_VIRTUAL_PS1=
11:20:55 ++ PS1='(.venv3) '
11:20:55 ++ export PS1
11:20:55 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
11:20:55 ++ export VIRTUAL_ENV_PROMPT
11:20:55 ++ hash -r
11:20:55 + omero admin stop
11:20:56 Waiting on shutdown. Use CTRL-C to exit
11:20:56 .+ sleep 5
11:21:12 + deactivate
11:21:12 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:21:12 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:21:12 + export PATH
11:21:12 + unset _OLD_VIRTUAL_PATH
11:21:12 + '[' -n '' ']'
11:21:12 + hash -r
11:21:12 + '[' -n '' ']'
11:21:12 + unset VIRTUAL_ENV
11:21:12 + unset VIRTUAL_ENV_PROMPT
11:21:12 + '[' '!' '' = nondestructive ']'
11:21:12 + unset -f deactivate
11:21:12 + rm -rf /home/omero/workspace/OMERO-server/.venv3
11:21:13 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
11:21:16 + '[' false = true ']'
11:21:16 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
11:21:16 Skipping PURGE_DATA:CleanDbAndRepo
11:21:16 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
11:21:18 Copied 1 artifact from "OMERO-build" build number 129
11:21:18 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 120
11:21:18 Copied 2 artifacts from "OMERO-build-build" build number 130
11:21:18 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13958667771198400188.sh
11:21:18 + source /home/settings.env
11:21:18 ++ OMERO_DB_HOST=pg
11:21:18 ++ OMERO_DB_USER=postgres
11:21:18 ++ OMERO_DB_PASS=
11:21:18 ++ OMERO_ROOT_PASS=omero
11:21:18 ++ OMERO_DATA_DIR=/OMERO
11:21:18 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:21:18 + OMERO_DB_NAME=OMERO-server
11:21:18 + OMERO_DATA_DIR=/home/omero/omero-server-data
11:21:18 + mkdir -p /home/omero/omero-server-data
11:21:18 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
11:21:18 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:21:18 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:21:18 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
11:21:18 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
11:21:18 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
11:21:18 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
11:21:18 ++ ls OMERO.server-5.6.3-597-b51737ada9-ice36-b129.zip
11:21:18 + ZIP=OMERO.server-5.6.3-597-b51737ada9-ice36-b129.zip
11:21:18 + '[' '!' -z '' ']'
11:21:18 + DIST=OMERO.server-5.6.3-597-b51737ada9-ice36-b129
11:21:18 + unzip OMERO.server-5.6.3-597-b51737ada9-ice36-b129.zip
11:21:18 Archive: OMERO.server-5.6.3-597-b51737ada9-ice36-b129.zip
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/blitz/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/grid/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/profiles/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/error/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/grid/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/luts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/luts/janelia/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/luts/matplotlib/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/luts/ncsa_paledit/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/luts/seaborn/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/luts/wcif/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/omero/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/omero/analysis_scripts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/omero/annotation_scripts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/omero/export_scripts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/omero/figure_scripts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/omero/import_scripts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/scripts/omero/util_scripts/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/server/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/share/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/share/licenses/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/misc/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__1/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__10/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__11/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__2/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__3/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__4/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__5/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__6/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__7/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__8/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3A__9/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3__4/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3__5/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3__6/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO3__7/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO4.1__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO4.2__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO4.2__0/t/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO4.3__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO4.4__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO4__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.0__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.1__1/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.2__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.3__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4DEV__1/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4DEV__2/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4DEV__3/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4__0/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/var/
11:21:18 creating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/var/tmp/
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/LICENSE.txt
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/backup.cfg
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/blitz/mail-senders.example
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/blitz/mail-server.example
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/build.properties
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/env.bat
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/env.sh
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/hibernate.properties
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/ice.config
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/logback-cli.xml
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/logback-indexing-cli.xml
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/logback-indexing.xml
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/logback.xml
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/mime.types
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/node1.cfg
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/node2.cfg
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/omero.properties
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/profiles/psql
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/rollover.cfg
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/Windows.cfg
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/error/maintainance.html
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/grid/README
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/grid/default.xml
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/grid/templates.xml
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/grid/windefault.xml
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/ice.config
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/internal.cfg
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/master.cfg
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/templates/robot.template
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/etc/testdropbox.config
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/history.rst
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/OMEZarrReader.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/accessors-smart.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/activation.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/aggdesigner-algorithm.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/aircompressor.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/antlr.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/aopalliance.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/apiguardian-api.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/asm.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/avatica-core.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/avatica-metrics.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/aws-java-sdk-core.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/aws-java-sdk-kms.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/aws-java-sdk-s3.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/base.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-anim.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-awt-util.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-bridge.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-codec.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-constants.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-css.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-dom.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-ext.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-gvt.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-i18n.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-parser.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-script.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-shared-resources.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-svg-dom.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-svggen.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-transcoder.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-util.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/batik-xml.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/btm.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/calcite-core.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/calcite-linq4j.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/cdm-core.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/checker-qual.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/commons-beanutils.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/commons-codec.jar
11:21:18 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/lib/client/commons-collections.jar
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11:21:20 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
11:21:20 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
11:21:20 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4__0/psql-footer.sql
11:21:20 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4__0/psql-header.sql
11:21:20 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4__0/schema.sql
11:21:20 inflating: OMERO.server-5.6.3-597-b51737ada9-ice36-b129/sql/psql/OMERO5.4__0/views.sql
11:21:20 + rm -f OMERO.server-5.6.3-597-b51737ada9-ice36-b129.zip
11:21:20 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-597-b51737ada9-ice36-b129 /home/omero/workspace/OMERO-server/OMERO.server
11:21:20 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
11:21:20 ++ deactivate nondestructive
11:21:20 ++ '[' -n '' ']'
11:21:20 ++ '[' -n '' ']'
11:21:20 ++ hash -r
11:21:20 ++ '[' -n '' ']'
11:21:20 ++ unset VIRTUAL_ENV
11:21:20 ++ unset VIRTUAL_ENV_PROMPT
11:21:20 ++ '[' '!' nondestructive = nondestructive ']'
11:21:20 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
11:21:20 ++ export VIRTUAL_ENV
11:21:20 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:21:20 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:21:20 ++ export PATH
11:21:20 ++ '[' -n '' ']'
11:21:20 ++ '[' -z '' ']'
11:21:20 ++ _OLD_VIRTUAL_PS1=
11:21:20 ++ PS1='(.venv3) '
11:21:20 ++ export PS1
11:21:20 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
11:21:20 ++ export VIRTUAL_ENV_PROMPT
11:21:20 ++ hash -r
11:21:20 + pip install -U pip
11:21:21 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
11:21:23 Collecting pip
11:21:23 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
11:21:23 Installing collected packages: pip
11:21:23 Attempting uninstall: pip
11:21:23 Found existing installation: pip 22.3.1
11:21:23 Uninstalling pip-22.3.1:
11:21:23 Successfully uninstalled pip-22.3.1
11:21:24 Successfully installed pip-26.0.1
11:21:24 WARNING: There was an error checking the latest version of pip.
11:21:24 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
11:21:24 Collecting zeroc-ice==3.6.5
11:21:25 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:21:28 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 14.3 MB/s 0:00:02
11:21:28 Installing collected packages: zeroc-ice
11:21:28 Successfully installed zeroc-ice-3.6.5
11:21:28 + pip install markdown
11:21:29 Collecting markdown
11:21:29 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
11:21:29 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
11:21:29 Installing collected packages: markdown
11:21:29 Successfully installed markdown-3.10.2
11:21:29 + pip install reportlab
11:21:30 Collecting reportlab
11:21:30 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
11:21:30 Collecting pillow>=9.0.0 (from reportlab)
11:21:30 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
11:21:30 Collecting charset-normalizer (from reportlab)
11:21:30 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
11:21:30 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
11:21:30 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
11:21:30 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
11:21:30 Installing collected packages: pillow, charset-normalizer, reportlab
11:21:31
11:21:31 Successfully installed charset-normalizer-3.4.7 pillow-12.2.0 reportlab-4.4.10
11:21:31 + pip install omego
11:21:32 Collecting omego
11:21:32 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
11:21:32 Collecting future (from omego)
11:21:32 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
11:21:32 Collecting yaclifw>=0.1.1 (from omego)
11:21:32 Using cached yaclifw-0.2.0-py3-none-any.whl
11:21:32 Collecting six (from yaclifw>=0.1.1->omego)
11:21:32 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
11:21:32 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
11:21:32 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:21:32 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
11:21:32 Installing collected packages: six, future, yaclifw, omego
11:21:32
11:21:32 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
11:21:32 + pip install tables
11:21:32 Collecting tables
11:21:32 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
11:21:33 Collecting numpy>=1.20.0 (from tables)
11:21:33 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
11:21:33 Collecting numexpr>=2.6.2 (from tables)
11:21:33 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
11:21:33 Collecting packaging (from tables)
11:21:33 Using cached packaging-26.1-py3-none-any.whl.metadata (3.5 kB)
11:21:33 Collecting py-cpuinfo (from tables)
11:21:33 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
11:21:33 Collecting blosc2>=2.3.0 (from tables)
11:21:33 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.2 kB)
11:21:33 Collecting ndindex (from blosc2>=2.3.0->tables)
11:21:33 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
11:21:33 Collecting msgpack (from blosc2>=2.3.0->tables)
11:21:33 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
11:21:33 Collecting requests (from blosc2>=2.3.0->tables)
11:21:33 Using cached requests-2.33.1-py3-none-any.whl.metadata (4.8 kB)
11:21:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7)
11:21:33 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
11:21:33 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
11:21:33 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
11:21:33 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
11:21:33 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
11:21:33 Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
11:21:33 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
11:21:33 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.2 MB)
11:21:33 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
11:21:33 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
11:21:33 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
11:21:33 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
11:21:33 Using cached packaging-26.1-py3-none-any.whl (95 kB)
11:21:33 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
11:21:33 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
11:21:33 Using cached idna-3.11-py3-none-any.whl (71 kB)
11:21:33 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
11:21:33 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
11:21:33 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
11:21:37
11:21:37 Successfully installed blosc2-4.1.2 certifi-2026.2.25 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.4 packaging-26.1 py-cpuinfo-9.0.0 requests-2.33.1 tables-3.11.1 urllib3-2.6.3
11:21:37 + pip install jinja2
11:21:37 Collecting jinja2
11:21:37 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
11:21:37 Collecting MarkupSafe>=2.0 (from jinja2)
11:21:37 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
11:21:37 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
11:21:37 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
11:21:37 Installing collected packages: MarkupSafe, jinja2
11:21:37
11:21:37 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
11:21:37 + pip install omero-py
11:21:38 Collecting omero-py
11:21:38 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
11:21:38 Collecting appdirs (from omero-py)
11:21:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
11:21:38 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
11:21:38 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.4)
11:21:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.2.0)
11:21:38 Collecting PyYAML (from omero-py)
11:21:38 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
11:21:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
11:21:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.33.1)
11:21:38 Collecting portalocker (from omero-py)
11:21:38 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
11:21:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7)
11:21:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
11:21:38 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
11:21:38 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.2.25)
11:21:38 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
11:21:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:21:38 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
11:21:38 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
11:21:38 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
11:21:40
11:21:40 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0
11:21:40 + pip install pyarrow
11:21:40 Collecting pyarrow
11:21:40 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
11:21:40 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
11:21:41 Installing collected packages: pyarrow
11:21:42 Successfully installed pyarrow-23.0.1
11:21:42 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
11:21:42 Collecting omero-metadata
11:21:42 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-ebc7ksf9/omero-metadata_4927eb933a694cb49f619becbda4d6e6
11:21:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-ebc7ksf9/omero-metadata_4927eb933a694cb49f619becbda4d6e6
11:21:44 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 3206fa3d2c248a2ddf2ed4ab5289dc2051d022c6
11:21:44 Installing build dependencies: started
11:21:45 Installing build dependencies: finished with status 'done'
11:21:45 Getting requirements to build wheel: started
11:21:45 Getting requirements to build wheel: finished with status 'done'
11:21:45 Preparing metadata (pyproject.toml): started
11:21:45 Preparing metadata (pyproject.toml): finished with status 'done'
11:21:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
11:21:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
11:21:45 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
11:21:45 Collecting pandas (from omero-metadata)
11:21:45 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
11:21:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
11:21:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
11:21:45 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.4)
11:21:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.2.0)
11:21:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
11:21:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.33.1)
11:21:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
11:21:46 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
11:21:46 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
11:21:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
11:21:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
11:21:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7)
11:21:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
11:21:46 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
11:21:46 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.2.25)
11:21:46 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
11:21:46 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
11:21:46 Building wheels for collected packages: omero-metadata
11:21:46 Building wheel for omero-metadata (pyproject.toml): started
11:21:46 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
11:21:46 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=4788468e397277d6100e8fa8661b3e4852936430744ae06e46e8e84aa74bb660
11:21:46 Stored in directory: /tmp/pip-ephem-wheel-cache-xq5atdh8/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
11:21:46 Successfully built omero-metadata
11:21:46 Installing collected packages: python-dateutil, pandas, omero-metadata
11:21:50
11:21:50 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.2 python-dateutil-2.9.0.post0
11:21:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
11:21:51 Collecting omero-cli-render
11:21:51 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-dys_rppj/omero-cli-render_d6dacba87c674f359641aeac7900f8a5
11:21:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-dys_rppj/omero-cli-render_d6dacba87c674f359641aeac7900f8a5
11:21:52 Running command git checkout -b merge_ci --track origin/merge_ci
11:21:52 Switched to a new branch 'merge_ci'
11:21:52 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:21:52 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a9cc3e035bb9e164cc8ad6d8b23b1413bc54641d
11:21:52 Installing build dependencies: started
11:21:53 Installing build dependencies: finished with status 'done'
11:21:53 Getting requirements to build wheel: started
11:21:53 Getting requirements to build wheel: finished with status 'done'
11:21:53 Preparing metadata (pyproject.toml): started
11:21:53 Preparing metadata (pyproject.toml): finished with status 'done'
11:21:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
11:21:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
11:21:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
11:21:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
11:21:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.4)
11:21:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.2.0)
11:21:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
11:21:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.33.1)
11:21:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
11:21:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7)
11:21:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
11:21:53 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
11:21:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.2.25)
11:21:53 Building wheels for collected packages: omero-cli-render
11:21:53 Building wheel for omero-cli-render (pyproject.toml): started
11:21:54 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
11:21:54 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19839 sha256=48186171d87af759a814ad769c6ba37dc47ab8f8c5bde22b44cd03c3cafdc4b3
11:21:54 Stored in directory: /tmp/pip-ephem-wheel-cache-z4aj0i4_/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
11:21:54 Successfully built omero-cli-render
11:21:54 Installing collected packages: omero-cli-render
11:21:55 Successfully installed omero-cli-render-0.8.2.dev0
11:21:55 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
11:21:55 Collecting omero-cli-duplicate
11:21:55 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-bd681bbu/omero-cli-duplicate_2b6853a40fcb431fb90c73ab917131bb
11:21:55 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-bd681bbu/omero-cli-duplicate_2b6853a40fcb431fb90c73ab917131bb
11:21:56 Running command git checkout -b merge_ci --track origin/merge_ci
11:21:56 Switched to a new branch 'merge_ci'
11:21:56 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:21:56 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit d366a7f026892b172484ee47e0db9e9e1cd51e84
11:21:56 Installing build dependencies: started
11:21:57 Installing build dependencies: finished with status 'done'
11:21:57 Getting requirements to build wheel: started
11:21:57 Getting requirements to build wheel: finished with status 'done'
11:21:57 Preparing metadata (pyproject.toml): started
11:21:58 Preparing metadata (pyproject.toml): finished with status 'done'
11:21:58 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
11:21:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
11:21:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
11:21:58 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.4)
11:21:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.2.0)
11:21:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
11:21:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
11:21:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.33.1)
11:21:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
11:21:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.7)
11:21:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
11:21:58 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
11:21:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.2.25)
11:21:58 Building wheels for collected packages: omero-cli-duplicate
11:21:58 Building wheel for omero-cli-duplicate (pyproject.toml): started
11:21:58 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
11:21:58 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=8f0224c85de45711c6f6c4e8eda807fc7e729f1bd86894be01fa2d4d356c45e8
11:21:58 Stored in directory: /tmp/pip-ephem-wheel-cache-05_o8ooy/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
11:21:58 Successfully built omero-cli-duplicate
11:21:58 Installing collected packages: omero-cli-duplicate
11:21:58 Successfully installed omero-cli-duplicate-0.4.1.dev0
11:21:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
11:21:58 Collecting omero-cli-zarr
11:21:58 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-vh2nijhk/omero-cli-zarr_f925a1f32d8a492c9437534a2eb11cc9
11:21:58 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-vh2nijhk/omero-cli-zarr_f925a1f32d8a492c9437534a2eb11cc9
11:21:59 Running command git checkout -b merge_ci --track origin/merge_ci
11:22:00 Switched to a new branch 'merge_ci'
11:22:00 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:22:00 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 32d6895b44cb5ec1832c58314a460d1d496ef111
11:22:00 Installing build dependencies: started
11:22:02 Installing build dependencies: finished with status 'done'
11:22:02 Getting requirements to build wheel: started
11:22:02 Getting requirements to build wheel: finished with status 'done'
11:22:02 Installing backend dependencies: started
11:22:03 Installing backend dependencies: finished with status 'done'
11:22:03 Preparing metadata (pyproject.toml): started
11:22:03 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:03 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
11:22:03 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
11:22:03 Using cached ome_zarr-0.16.0-py3-none-any.whl.metadata (2.9 kB)
11:22:03 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.4)
11:22:03 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
11:22:03 Using cached dask-2026.3.0-py3-none-any.whl.metadata (3.9 kB)
11:22:03 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
11:22:03 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
11:22:03 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:03 Using cached fsspec-2026.3.0-py3-none-any.whl.metadata (10 kB)
11:22:04 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
11:22:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.33.1)
11:22:04 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
11:22:04 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
11:22:04 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
11:22:04 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
11:22:04 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached click-8.3.2-py3-none-any.whl.metadata (2.6 kB)
11:22:04 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
11:22:04 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.1)
11:22:04 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
11:22:04 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
11:22:04 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
11:22:04 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached s3fs-2026.3.0-py3-none-any.whl.metadata (1.2 kB)
11:22:04 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached zipp-3.23.1-py3-none-any.whl.metadata (3.6 kB)
11:22:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
11:22:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
11:22:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.2.0)
11:22:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
11:22:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
11:22:04 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
11:22:04 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached aiobotocore-3.4.0-py3-none-any.whl.metadata (27 kB)
11:22:04 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:04 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
11:22:05 Collecting botocore<1.42.85,>=1.42.79 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached botocore-1.42.84-py3-none-any.whl.metadata (5.9 kB)
11:22:05 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
11:22:05 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
11:22:05 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
11:22:05 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
11:22:05 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
11:22:05 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
11:22:05 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
11:22:05 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:05 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
11:22:06 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:06 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
11:22:06 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:06 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
11:22:06 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.85,>=1.42.79->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
11:22:06 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
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11:22:06 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:06 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
11:22:06 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:06 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
11:22:06 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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11:22:06 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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11:22:06 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
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11:22:06 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:06 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
11:22:06 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
11:22:06 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
11:22:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.7)
11:22:06 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.2.25)
11:22:06 Using cached ome_zarr-0.16.0-py3-none-any.whl (46 kB)
11:22:06 Using cached dask-2026.3.0-py3-none-any.whl (1.5 MB)
11:22:06 Using cached click-8.3.2-py3-none-any.whl (108 kB)
11:22:06 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
11:22:06 Using cached fsspec-2026.3.0-py3-none-any.whl (202 kB)
11:22:06 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
11:22:06 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
11:22:06 Using cached s3fs-2026.3.0-py3-none-any.whl (32 kB)
11:22:06 Using cached aiobotocore-3.4.0-py3-none-any.whl (88 kB)
11:22:06 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
11:22:06 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
11:22:06 Using cached botocore-1.42.84-py3-none-any.whl (14.8 MB)
11:22:06 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
11:22:06 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
11:22:06 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
11:22:06 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (102 kB)
11:22:06 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
11:22:06 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
11:22:06 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
11:22:06 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
11:22:06 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
11:22:06 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
11:22:07 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
11:22:07 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
11:22:07 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
11:22:07 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
11:22:07 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
11:22:07 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
11:22:07 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
11:22:07 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
11:22:07 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
11:22:07 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
11:22:07 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
11:22:07 Using cached zipp-3.23.1-py3-none-any.whl (10 kB)
11:22:07 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
11:22:07 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
11:22:07 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
11:22:07 Building wheels for collected packages: omero-cli-zarr
11:22:07 Building wheel for omero-cli-zarr (pyproject.toml): started
11:22:07 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
11:22:07 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g32d6895-py3-none-any.whl size=38290 sha256=39d94e1aee2227b04a6426676aadc0c303c475a028d3ccaadb5e5a0d0c870df8
11:22:07 Stored in directory: /tmp/pip-ephem-wheel-cache-8wmu5m_z/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
11:22:07 Successfully built omero-cli-zarr
11:22:07 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, Deprecated, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
11:22:18
11:22:18 Successfully installed Deprecated-1.3.1 aiobotocore-3.4.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.42.84 click-8.3.2 cloudpickle-3.1.2 dask-2026.3.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.3.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.16.0 omero-cli-zarr-0.5.5.dev162+g32d6895 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.3.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.2 yarl-1.23.0 zarr-3.1.6 zipp-3.23.1
11:22:18 + pip install omero-certificates
11:22:19 Collecting omero-certificates
11:22:19 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
11:22:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
11:22:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
11:22:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
11:22:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.4)
11:22:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.2.0)
11:22:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
11:22:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
11:22:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.33.1)
11:22:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
11:22:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.7)
11:22:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
11:22:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
11:22:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.2.25)
11:22:19 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
11:22:19 Installing collected packages: omero-certificates
11:22:19 Successfully installed omero-certificates-0.4.0
11:22:19 + for x in *.tar.gz
11:22:19 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
11:22:19 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
11:22:19 Installing build dependencies: started
11:22:20 Installing build dependencies: finished with status 'done'
11:22:20 Getting requirements to build wheel: started
11:22:20 Getting requirements to build wheel: finished with status 'done'
11:22:20 Preparing metadata (pyproject.toml): started
11:22:21 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:21 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
11:22:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
11:22:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
11:22:21 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.4)
11:22:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.2.0)
11:22:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
11:22:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
11:22:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.33.1)
11:22:21 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
11:22:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.7)
11:22:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
11:22:21 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
11:22:21 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.2.25)
11:22:21 Building wheels for collected packages: omero-dropbox
11:22:21 Building wheel for omero-dropbox (pyproject.toml): started
11:22:21 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
11:22:21 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=c81e2dfdf2abada25ac3be617f4f83af09f21de85f7fd2f081dafb0c8ca33f9c
11:22:21 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
11:22:21 Successfully built omero-dropbox
11:22:21 Installing collected packages: omero-dropbox
11:22:21 Successfully installed omero-dropbox-5.7.1.dev0
11:22:21 + for x in *.tar.gz
11:22:21 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
11:22:21 Processing ./omero_marshal-0.9.2.dev0.tar.gz
11:22:21 Installing build dependencies: started
11:22:22 Installing build dependencies: finished with status 'done'
11:22:22 Getting requirements to build wheel: started
11:22:23 Getting requirements to build wheel: finished with status 'done'
11:22:23 Preparing metadata (pyproject.toml): started
11:22:23 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:23 Building wheels for collected packages: omero_marshal
11:22:23 Building wheel for omero_marshal (pyproject.toml): started
11:22:23 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
11:22:23 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=9642d55b21be01d6ed4cf44f2f062f8327a5f567dc1dab2ae9724b6bd6aa5490
11:22:23 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
11:22:23 Successfully built omero_marshal
11:22:23 Installing collected packages: omero_marshal
11:22:23 Successfully installed omero_marshal-0.9.2.dev0
11:22:23 + for x in *.tar.gz
11:22:23 + pip install -U omero_py-5.22.2.dev0.tar.gz
11:22:24 Processing ./omero_py-5.22.2.dev0.tar.gz
11:22:24 Installing build dependencies: started
11:22:25 Installing build dependencies: finished with status 'done'
11:22:25 Getting requirements to build wheel: started
11:22:25 Getting requirements to build wheel: finished with status 'done'
11:22:25 Preparing metadata (pyproject.toml): started
11:22:25 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:25 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
11:22:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
11:22:25 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.4)
11:22:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.2.0)
11:22:25 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
11:22:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
11:22:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.33.1)
11:22:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
11:22:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.7)
11:22:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.11)
11:22:25 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.6.3)
11:22:25 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.2.25)
11:22:25 Building wheels for collected packages: omero-py
11:22:25 Building wheel for omero-py (pyproject.toml): started
11:22:26 Building wheel for omero-py (pyproject.toml): finished with status 'done'
11:22:26 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2786692 sha256=cd1e03cf0460ee8cc1f080c1244ee8300d77bbebeea0f20ab91206154d6db34e
11:22:26 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
11:22:26 Successfully built omero-py
11:22:26 Installing collected packages: omero-py
11:22:26 Attempting uninstall: omero-py
11:22:26 Found existing installation: omero-py 5.22.1
11:22:26 Uninstalling omero-py-5.22.1:
11:22:27 Successfully uninstalled omero-py-5.22.1
11:22:29 Successfully installed omero-py-5.22.2.dev0
11:22:29 + for x in *.tar.gz
11:22:29 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
11:22:29 Processing ./omero_scripts-5.10.1.dev0.tar.gz
11:22:29 Installing build dependencies: started
11:22:30 Installing build dependencies: finished with status 'done'
11:22:30 Getting requirements to build wheel: started
11:22:30 Getting requirements to build wheel: finished with status 'done'
11:22:30 Preparing metadata (pyproject.toml): started
11:22:30 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:30 Building wheels for collected packages: omero-scripts
11:22:30 Building wheel for omero-scripts (pyproject.toml): started
11:22:31 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
11:22:31 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=ba393181e6e2181e8c46f320f8d5efa19b6c613e98f5201dbedee51dd3d2a15f
11:22:31 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
11:22:31 Successfully built omero-scripts
11:22:31 Installing collected packages: omero-scripts
11:22:31 Successfully installed omero-scripts-5.10.1.dev0
11:22:31 + for x in *.tar.gz
11:22:31 + pip install -U omero_web-5.31.1.dev0.tar.gz
11:22:31 Processing ./omero_web-5.31.1.dev0.tar.gz
11:22:32 Installing build dependencies: started
11:22:32 Installing build dependencies: finished with status 'done'
11:22:32 Getting requirements to build wheel: started
11:22:33 Getting requirements to build wheel: finished with status 'done'
11:22:33 Preparing metadata (pyproject.toml): started
11:22:33 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:33 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.2.dev0)
11:22:33 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
11:22:33 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
11:22:33 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
11:22:33 Using cached django-5.2.13-py3-none-any.whl.metadata (4.1 kB)
11:22:33 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
11:22:33 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
11:22:33 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
11:22:33 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
11:22:33 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
11:22:33 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
11:22:33 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
11:22:33 Using cached gunicorn-25.3.0-py3-none-any.whl.metadata (5.5 kB)
11:22:33 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
11:22:33 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.2.0)
11:22:33 Collecting pytz (from omero-web==5.31.1.dev0)
11:22:33 Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB)
11:22:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
11:22:33 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.1)
11:22:33 Collecting importlib-resources (from omero-web==5.31.1.dev0)
11:22:33 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
11:22:33 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
11:22:33 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
11:22:33 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
11:22:33 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
11:22:33 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
11:22:34 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
11:22:34 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
11:22:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
11:22:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
11:22:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.4)
11:22:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
11:22:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
11:22:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.33.1)
11:22:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.7)
11:22:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
11:22:34 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
11:22:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.2.25)
11:22:34 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
11:22:34 Using cached django-5.2.13-py3-none-any.whl (8.3 MB)
11:22:34 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
11:22:34 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
11:22:34 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
11:22:34 Using cached gunicorn-25.3.0-py3-none-any.whl (208 kB)
11:22:34 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
11:22:34 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
11:22:34 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
11:22:34 Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB)
11:22:34 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
11:22:34 Building wheels for collected packages: omero-web
11:22:34 Building wheel for omero-web (pyproject.toml): started
11:22:35 Building wheel for omero-web (pyproject.toml): finished with status 'done'
11:22:35 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819315 sha256=40de3d07bc51cae3efc92090ac4c6608a43e1d00d1247bb510deaf65c1142e73
11:22:35 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
11:22:35 Successfully built omero-web
11:22:35 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
11:22:38
11:22:38 Successfully installed Django-5.2.13 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.3.0 importlib-resources-7.1.0 omero-web-5.31.1.dev0 pytz-2026.1.post1 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.12.0
11:22:38 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
11:22:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
11:22:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
11:22:38 --2026-04-17 11:22:38-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
11:22:39 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
11:22:39 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
11:22:39 HTTP request sent, awaiting response... 200 OK
11:22:39 Length: 139338 (136K) [text/plain]
11:22:39 Saving to: ‘Figure_To_Pdf.py’
11:22:39
11:22:39 0K .......... .......... .......... .......... .......... 36% 2.66M 0s
11:22:39 50K .......... .......... .......... .......... .......... 73% 3.99M 0s
11:22:39 100K .......... .......... .......... ...... 100% 14.7M=0.03s
11:22:39
11:22:39 2026-04-17 11:22:39 (4.03 MB/s) - ‘Figure_To_Pdf.py’ saved [139338/139338]
11:22:39
11:22:39 + chmod 755 Figure_To_Pdf.py
11:22:39 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
11:22:39 + omero config set omero.db.name OMERO-server
11:22:41 + omero config set omero.db.host pg
11:22:43 + omero config set omero.db.user postgres
11:22:45 + omero config set omero.data.dir /home/omero/omero-server-data
11:22:47 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
11:22:49 + omero config set omero.db.poolsize 25
11:22:51 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
11:22:53 + omero config set omero.security.trustStorePassword changeit
11:22:55 + omero config set omero.mail.config true
11:22:57 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
11:22:59 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
11:23:01 + omero certificates
11:23:03 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
11:23:03 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
11:23:03 + '[' false = true ']'
11:23:03 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
11:23:03 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
11:23:03 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
11:23:03 2026-04-17 11:23:03,530 [ omego.db] DEBUG dbcommand => upgrade
11:23:03 2026-04-17 11:23:03,530 [ omego.db] DEBUG dbhost => localhost
11:23:03 2026-04-17 11:23:03,530 [ omego.db] DEBUG dbname => OMERO-server
11:23:03 2026-04-17 11:23:03,530 [ omego.db] DEBUG dbpass => omero
11:23:03 2026-04-17 11:23:03,530 [ omego.db] DEBUG dbuser => omero
11:23:03 2026-04-17 11:23:03,530 [ omego.db] DEBUG rootpass => omero
11:23:03 2026-04-17 11:23:03,530 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
11:23:03 2026-04-17 11:23:03,530 [omego.extern] INFO Executing : omero version
11:23:05 OMERO.py version:
11:23:05 OMERO.server version:
11:23:05 5.6.3-597-b51737ada9-ice36-b129
11:23:05 5.22.2.dev0
11:23:05 2026-04-17 11:23:05,652 [omego.extern] INFO Completed [2.122 s]
11:23:05 2026-04-17 11:23:05,652 [omego.extern] DEBUG Using omero CLI from omero
11:23:05 2026-04-17 11:23:05,652 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
11:23:05 2026-04-17 11:23:05,652 [omego.extern] INFO Running [current environment]: omero config get --show-password
11:23:05 2026-04-17 11:23:05,652 [omego.extern] INFO Executing : omero config get --show-password
11:23:07 2026-04-17 11:23:07,635 [omego.extern] INFO Completed [1.983 s]
11:23:07 2026-04-17 11:23:07,635 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
11:23:07 2026-04-17 11:23:07,636 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
11:23:07 2026-04-17 11:23:07,642 [omego.extern] INFO Completed [0.006 s]
11:23:07 2026-04-17 11:23:07,642 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
11:23:07 2026-04-17 11:23:07,642 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
11:23:07
11:23:07 2026-04-17 11:23:07,642 [omego.extern] INFO Running [current environment]: omero config get --show-password
11:23:07 2026-04-17 11:23:07,642 [omego.extern] INFO Executing : omero config get --show-password
11:23:09 2026-04-17 11:23:09,688 [omego.extern] INFO Completed [2.046 s]
11:23:09 2026-04-17 11:23:09,688 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
11:23:09 2026-04-17 11:23:09,688 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
11:23:09 2026-04-17 11:23:09,697 [omego.extern] INFO Completed [0.009 s]
11:23:09 2026-04-17 11:23:09,697 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n'
11:23:09 2026-04-17 11:23:09,697 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
11:23:09 2026-04-17 11:23:09,697 [omego.extern] INFO Running [current environment]: omero config get --show-password
11:23:09 2026-04-17 11:23:09,697 [omego.extern] INFO Executing : omero config get --show-password
11:23:11 2026-04-17 11:23:11,740 [omego.extern] INFO Completed [2.042 s]
11:23:11 2026-04-17 11:23:11,740 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
11:23:11 2026-04-17 11:23:11,740 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
11:23:11 2026-04-17 11:23:11,750 [omego.extern] INFO Completed [0.010 s]
11:23:11 2026-04-17 11:23:11,750 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
11:23:11 2026-04-17 11:23:11,750 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
11:23:11 2026-04-17 11:23:11,752 [ omego.db] INFO Database is already at OMERO5.4__0
11:23:11 + export LANG=en_US.UTF-8
11:23:11 + LANG=en_US.UTF-8
11:23:11 + export LANGUAGE=en_US:en
11:23:11 + LANGUAGE=en_US:en
11:23:11 + export LC_ALL=en_US.UTF-8
11:23:11 + LC_ALL=en_US.UTF-8
11:23:11 + BUILD_ID=DONT_KILL_ME
11:23:11 + omero admin start
11:23:16 No descriptor given. Using etc/grid/default.xml
11:23:22 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
11:23:22 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
11:23:22 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
11:23:22 Waiting on startup. Use CTRL-C to exit
11:23:22 .............................
11:28:12 Failed to startup some components after 300 seconds
11:28:12 Calling "stop" on remaining components
11:28:12 Waiting on shutdown. Use CTRL-C to exit
11:28:12 ......Build step 'Execute shell' marked build as failure
11:29:13 Finished: FAILURE
