Skipping 123 KB..
Full Log10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__1/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__10/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__11/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__2/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__3/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__4/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__5/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__6/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__7/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__8/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__9/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__4/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__5/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__6/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__7/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.1__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/t/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.3__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.4__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__1/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__2/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__3/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:23:45 creating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/psql-header.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/schema.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/views.sql
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/test.xml
10:23:45 inflating: openmicroscopy-5.6.3-437-4311821d91-ice36/update_dependencies.sh
10:23:45 extracting: openmicroscopy-5.6.3-437-4311821d91-ice36/components/antlib/resources/gitversion.xml
10:23:45 extracting: openmicroscopy-5.6.3-437-4311821d91-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
10:23:45 + rm -f openmicroscopy-5.6.3-437-4311821d91-ice36.zip
10:23:45 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-4311821d91-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
10:23:45 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
10:23:45 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
10:23:45 ++ ls OMERO.server-5.6.3-437-4311821d91-ice36.zip
10:23:45 + ZIP=OMERO.server-5.6.3-437-4311821d91-ice36.zip
10:23:45 + DIST=OMERO.server-5.6.3-437-4311821d91-ice36
10:23:45 + unzip -n OMERO.server-5.6.3-437-4311821d91-ice36.zip
10:23:45 Archive: OMERO.server-5.6.3-437-4311821d91-ice36.zip
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/blitz/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/grid/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/profiles/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/error/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/client/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/luts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/luts/janelia/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/luts/ncsa_paledit/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/luts/wcif/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/analysis_scripts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/annotation_scripts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/export_scripts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/figure_scripts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/import_scripts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/scripts/omero/util_scripts/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/lib/server/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/share/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/misc/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__1/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__10/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__11/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__2/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__3/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__4/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__5/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__6/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__7/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__8/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__9/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__4/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__5/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__6/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__7/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.1__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/t/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.3__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.4__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__1/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__2/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__3/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/
10:23:45 creating: OMERO.server-5.6.3-437-4311821d91-ice36/var/
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/LICENSE.txt
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/backup.cfg
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/blitz/mail-senders.example
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/blitz/mail-server.example
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/build.properties
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/env.bat
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/env.sh
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/hibernate.properties
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/ice.config
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/logback-cli.xml
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/logback-indexing-cli.xml
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/logback-indexing.xml
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/logback.xml
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/mime.types
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/node1.cfg
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/node2.cfg
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/omero.properties
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/profiles/psql
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/rollover.cfg
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/Windows.cfg
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/error/maintainance.html
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/README
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/default.xml
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/templates.xml
10:23:45 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/etc/templates/grid/windefault.xml
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10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/share/licenses/zpl-v2.1.txt
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/README.txt
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/misc/Makefile
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/misc/current.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/misc/enums.py
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/psql-header.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/schema.sql
10:23:48 inflating: OMERO.server-5.6.3-437-4311821d91-ice36/sql/psql/OMERO5.4__0/views.sql
10:23:48 + rm -f OMERO.server-5.6.3-437-4311821d91-ice36.zip
10:23:48 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-4311821d91-ice36 /home/omero/workspace/OMERO-training/OMERO.server
10:23:48 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
10:23:48 ++ deactivate nondestructive
10:23:48 ++ '[' -n '' ']'
10:23:48 ++ '[' -n '' ']'
10:23:48 ++ '[' -n /bin/bash -o -n '' ']'
10:23:48 ++ hash -r
10:23:48 ++ '[' -n '' ']'
10:23:48 ++ unset VIRTUAL_ENV
10:23:48 ++ '[' '!' nondestructive = nondestructive ']'
10:23:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
10:23:48 ++ export VIRTUAL_ENV
10:23:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:23:48 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:23:48 ++ export PATH
10:23:48 ++ '[' -n '' ']'
10:23:48 ++ '[' -z '' ']'
10:23:48 ++ _OLD_VIRTUAL_PS1=
10:23:48 ++ PS1='(.venv3) '
10:23:48 ++ export PS1
10:23:48 ++ '[' -n /bin/bash -o -n '' ']'
10:23:48 ++ hash -r
10:23:48 + for x in *.gz
10:23:48 + pip install omero-dropbox-5.6.3.dev0.tar.gz
10:23:48 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
10:23:48 Installing build dependencies: started
10:23:50 Installing build dependencies: finished with status 'done'
10:23:50 Getting requirements to build wheel: started
10:23:50 Getting requirements to build wheel: finished with status 'done'
10:23:50 Installing backend dependencies: started
10:23:51 Installing backend dependencies: finished with status 'done'
10:23:51 Preparing metadata (pyproject.toml): started
10:23:51 Preparing metadata (pyproject.toml): finished with status 'done'
10:23:51 Collecting omero-py (from omero-dropbox==5.6.3.dev0)
10:23:51 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
10:23:51 Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
10:23:51 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
10:23:52 Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
10:23:52 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:23:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
10:23:52 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
10:23:52 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
10:23:52 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
10:23:55 Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
10:23:55 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
10:23:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
10:23:55 Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
10:23:55 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
10:23:55 Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
10:23:55 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
10:23:55 Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
10:23:55 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
10:23:56 Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
10:23:56 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
10:23:56 Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
10:23:56 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
10:23:56 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
10:23:56 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
10:23:56 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
10:23:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:23:56 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
10:23:56 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
10:23:56 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
10:23:56 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
10:23:56 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
10:23:56 Using cached idna-3.6-py3-none-any.whl (61 kB)
10:23:56 Building wheels for collected packages: omero-dropbox
10:23:56 Building wheel for omero-dropbox (pyproject.toml): started
10:23:56 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:23:56 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=a94052aad81a230a236bc046cca0a20f2f4c9b1fc0f541a965dbc15385ca30a7
10:23:56 Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43
10:23:56 Successfully built omero-dropbox
10:23:57 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
10:24:00 Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
10:24:01 + for x in *.gz
10:24:01 + pip install omero_marshal-0.9.1.dev0.tar.gz
10:24:01 Processing ./omero_marshal-0.9.1.dev0.tar.gz
10:24:01 Installing build dependencies: started
10:24:03 Installing build dependencies: finished with status 'done'
10:24:03 Getting requirements to build wheel: started
10:24:03 Getting requirements to build wheel: finished with status 'done'
10:24:03 Installing backend dependencies: started
10:24:04 Installing backend dependencies: finished with status 'done'
10:24:04 Preparing metadata (pyproject.toml): started
10:24:05 Preparing metadata (pyproject.toml): finished with status 'done'
10:24:05 Building wheels for collected packages: omero_marshal
10:24:05 Building wheel for omero_marshal (pyproject.toml): started
10:24:05 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:24:05 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=0825852f315937b52b251822f1fbe1272f530cbabb706d236615fa192c5c6ca6
10:24:05 Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
10:24:05 Successfully built omero_marshal
10:24:05 Installing collected packages: omero_marshal
10:24:05 Successfully installed omero_marshal-0.9.1.dev0
10:24:06 + for x in *.gz
10:24:06 + pip install omero-py-5.19.1.dev0.tar.gz
10:24:06 Processing ./omero-py-5.19.1.dev0.tar.gz
10:24:06 Installing build dependencies: started
10:24:08 Installing build dependencies: finished with status 'done'
10:24:08 Getting requirements to build wheel: started
10:24:09 Getting requirements to build wheel: finished with status 'done'
10:24:09 Installing backend dependencies: started
10:24:10 Installing backend dependencies: finished with status 'done'
10:24:10 Preparing metadata (pyproject.toml): started
10:24:10 Preparing metadata (pyproject.toml): finished with status 'done'
10:24:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
10:24:10 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
10:24:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
10:24:10 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
10:24:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
10:24:10 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
10:24:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
10:24:10 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
10:24:10 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
10:24:10 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
10:24:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
10:24:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
10:24:10 Building wheels for collected packages: omero-py
10:24:10 Building wheel for omero-py (pyproject.toml): started
10:24:11 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:24:11 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781680 sha256=c49c544a600d0bdc593a68d96938adb05701a24240a814799382a2b863587a68
10:24:11 Stored in directory: /home/omero/.cache/pip/wheels/0f/f4/17/8aed7bcc59ee680e04154ad77e9d7c203954875e9f0e1940d5
10:24:12 Successfully built omero-py
10:24:12 Installing collected packages: omero-py
10:24:12 Attempting uninstall: omero-py
10:24:12 Found existing installation: omero-py 5.19.0
10:24:12 Uninstalling omero-py-5.19.0:
10:24:12 Successfully uninstalled omero-py-5.19.0
10:24:15 Successfully installed omero-py-5.19.1.dev0
10:24:16 + for x in *.gz
10:24:16 + pip install omero-scripts-5.8.1.dev0.tar.gz
10:24:16 Processing ./omero-scripts-5.8.1.dev0.tar.gz
10:24:16 Installing build dependencies: started
10:24:19 Installing build dependencies: finished with status 'done'
10:24:19 Getting requirements to build wheel: started
10:24:19 Getting requirements to build wheel: finished with status 'done'
10:24:19 Installing backend dependencies: started
10:24:20 Installing backend dependencies: finished with status 'done'
10:24:20 Preparing metadata (pyproject.toml): started
10:24:20 Preparing metadata (pyproject.toml): finished with status 'done'
10:24:20 Building wheels for collected packages: omero-scripts
10:24:20 Building wheel for omero-scripts (pyproject.toml): started
10:24:21 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:24:21 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=3cd56c551f6647d1e996d644cf768d05f0c7b92b30c7b9bfd538c6c5ef3a87a5
10:24:21 Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196
10:24:21 Successfully built omero-scripts
10:24:21 Installing collected packages: omero-scripts
10:24:21 Successfully installed omero-scripts-5.8.1.dev0
10:24:21 + for x in *.gz
10:24:21 + pip install omero-web-5.25.1.dev0.tar.gz
10:24:22 Processing ./omero-web-5.25.1.dev0.tar.gz
10:24:22 Installing build dependencies: started
10:24:24 Installing build dependencies: finished with status 'done'
10:24:24 Getting requirements to build wheel: started
10:24:25 Getting requirements to build wheel: finished with status 'done'
10:24:25 Installing backend dependencies: started
10:24:26 Installing backend dependencies: finished with status 'done'
10:24:26 Preparing metadata (pyproject.toml): started
10:24:26 Preparing metadata (pyproject.toml): finished with status 'done'
10:24:26 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
10:24:26 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
10:24:26 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
10:24:27 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
10:24:27 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
10:24:27 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
10:24:27 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
10:24:27 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
10:24:27 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:24:27 Collecting django-csp (from omero-web==5.25.1.dev0)
10:24:27 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
10:24:27 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
10:24:27 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
10:24:27 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
10:24:27 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
10:24:27 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
10:24:27 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
10:24:27 Collecting pytz (from omero-web==5.25.1.dev0)
10:24:27 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
10:24:27 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
10:24:27 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
10:24:27 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
10:24:27 Using cached asgiref-3.7.2-py3-none-any.whl.metadata (9.2 kB)
10:24:28 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
10:24:28 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
10:24:28 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
10:24:28 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
10:24:28 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
10:24:28 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
10:24:28 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
10:24:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
10:24:28 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
10:24:28 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
10:24:28 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
10:24:28 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
10:24:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
10:24:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
10:24:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:24:28 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
10:24:28 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
10:24:28 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
10:24:28 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
10:24:28 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
10:24:28 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
10:24:28 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
10:24:28 Using cached asgiref-3.7.2-py3-none-any.whl (24 kB)
10:24:28 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
10:24:28 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
10:24:28 Building wheels for collected packages: omero-web
10:24:28 Building wheel for omero-web (pyproject.toml): started
10:24:30 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:24:30 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2769903 sha256=63b82c9d8bbd3e4db40bfb1b4f353f063003d0dc23c80007dc31de546f9797cc
10:24:30 Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7
10:24:30 Successfully built omero-web
10:24:30 Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
10:24:34 Successfully installed Django-4.2.11 asgiref-3.7.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
10:24:34 + cd /home/omero/workspace/OMERO-training/OMERO.server
10:24:34 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
10:24:34 + HOSTNAME=7ef93461c40d
10:24:34 + PORT=4064
10:24:34 + WEBHOST=http://nginx/web
10:24:34 + SERVER_NAME=omero
10:24:34 + ROOT_PASSWORD=omero
10:24:34 + GROUP_NAME=training_group
10:24:34 + GROUP_NAME_2=training_group-2
10:24:34 + USER_NAME=training_user
10:24:34 + USER_NAME_2=training_user-2
10:24:34 + LIGHTADMIN_USER_NAME=ladmin_user
10:24:34 + USER_PASSWORD=ome
10:24:34 + CONFIG_FILENAME=training_ice.config
10:24:34 + omero login root@7ef93461c40d:4064 -w omero
10:24:36 Created session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:36 + omero group add training_group --type read-only --ignore-existing
10:24:37 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:37 Group exists: training_group (id=3)
10:24:37 + omero group add training_group-2 --type read-only --ignore-existing
10:24:38 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:38 Group exists: training_group-2 (id=4)
10:24:39 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
10:24:40 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:40 User exists: training_user (id=2)
10:24:40 + omero user joingroup --name training_user --group-name training_group training_group-2
10:24:41 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:41 2 is already in group 3
10:24:41 2 is already in group 4
10:24:41 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
10:24:43 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:43 User exists: training_user-2 (id=3)
10:24:43 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
10:24:44 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:44 3 is already in group 3
10:24:44 3 is already in group 4
10:24:44 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
10:24:45 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:45 User exists: ladmin_user (id=4)
10:24:46 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
10:24:47 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:47 4 is already in group 3
10:24:47 4 is already in group 4
10:24:47 ++ omero user info ladmin_user --style plain
10:24:47 ++ cut -d, -f1
10:24:48 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:48 + id=4
10:24:48 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
10:24:49 Using session for root@7ef93461c40d:4064. Idle timeout: 10 min. Current group: system
10:24:49 Experimenter:4
10:24:49 + omero logout
10:24:51 + touch test.fake
10:24:51 + omero login training_user@7ef93461c40d:4064 -w ome -g training_group
10:24:52 Created session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:24:52 + nProjects=1
10:24:52 + nDatasets=2
10:24:52 + echo 'Creating projects and datasets'
10:24:52 Creating projects and datasets
10:24:52 + (( i=1 ))
10:24:52 + (( i<=1 ))
10:24:52 ++ omero obj new Project 'name=Project 1'
10:24:53 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:24:54 + project=Project:151
10:24:54 + (( j=1 ))
10:24:54 + (( j<=2 ))
10:24:54 ++ omero obj new Dataset 'name=Dataset 1-1'
10:24:55 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:24:55 + dataset=Dataset:151
10:24:55 + omero obj new ProjectDatasetLink parent=Project:151 child=Dataset:151
10:24:56 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:24:56 ProjectDatasetLink:151
10:24:57 + echo 'Importing image into dataset'
10:24:57 Importing image into dataset
10:24:57 + omero import -d Dataset:151 test.fake --debug ERROR
10:24:58 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:24:58 2024-03-20 10:24:58,891 439 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
10:24:58 2024-03-20 10:24:58,923 471 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
10:25:06 Image:151
10:25:06 Other imported objects:
10:25:06 Fileset:151
10:25:06
10:25:06 ==> Summary
10:25:06 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:05.161
10:25:06 + (( j++ ))
10:25:06 + (( j<=2 ))
10:25:06 ++ omero obj new Dataset 'name=Dataset 1-2'
10:25:07 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:07 + dataset=Dataset:152
10:25:07 + omero obj new ProjectDatasetLink parent=Project:151 child=Dataset:152
10:25:08 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:08 ProjectDatasetLink:152
10:25:08 + echo 'Importing image into dataset'
10:25:08 Importing image into dataset
10:25:08 + omero import -d Dataset:152 test.fake --debug ERROR
10:25:09 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:10 2024-03-20 10:25:10,396 405 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
10:25:10 2024-03-20 10:25:10,418 427 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
10:25:13 Image:152
10:25:13 Other imported objects:
10:25:13 Fileset:152
10:25:13
10:25:13 ==> Summary
10:25:13 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.763
10:25:14 + (( j++ ))
10:25:14 + (( j<=2 ))
10:25:14 + (( i++ ))
10:25:14 + (( i<=1 ))
10:25:14 + (( j=1 ))
10:25:14 + (( j<=2 ))
10:25:14 + omero obj new Dataset 'name=Orphaned dataset 1'
10:25:15 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:15 Dataset:153
10:25:15 + (( j++ ))
10:25:15 + (( j<=2 ))
10:25:15 + omero obj new Dataset 'name=Orphaned dataset 2'
10:25:16 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:16 Dataset:154
10:25:16 + (( j++ ))
10:25:16 + (( j<=2 ))
10:25:16 + echo 'Importing image file'
10:25:16 Importing image file
10:25:16 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:25:16 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:25:23 ++ sed -n -e 's/^Image://p' image_import.log
10:25:23 + imageid=153
10:25:23 ++ omero obj new MapAnnotation
10:25:24 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:24 + MAP=MapAnnotation:151
10:25:24 + omero obj map-set MapAnnotation:151 mapValue testkey testvalue
10:25:25 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:25 MapAnnotation:151
10:25:26 + omero obj new ImageAnnotationLink parent=Image:153 child=MapAnnotation:151
10:25:27 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:28 ImageAnnotationLink:151
10:25:28 ++ omero obj new Screen name=Screen
10:25:29 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:30 + screen=Screen:151
10:25:30 ++ omero obj new Plate name=Plate
10:25:31 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:31 + plate=Plate:151
10:25:31 + omero obj new ScreenPlateLink parent=Screen:151 child=Plate:151
10:25:32 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:32 ScreenPlateLink:151
10:25:32 + echo 'Importing SPW file'
10:25:32 Importing SPW file
10:25:32 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
10:25:32 + omero import -r Screen:151 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
10:25:41 ++ sed -n -e 's/^Plate://p' plate_import.log
10:25:41 + plateid=152
10:25:41 + omero logout
10:25:42 + omero login training_user-2@7ef93461c40d:4064 -w ome -g training_group
10:25:43 Created session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:43 + omero obj new Project 'name=Project 0'
10:25:44 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:44 Project:152
10:25:45 + omero obj new Dataset 'name=Dataset 0'
10:25:45 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:45 Dataset:155
10:25:46 + omero import test.fake --debug ERROR
10:25:47 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:47 2024-03-20 10:25:47,690 314 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
10:25:47 2024-03-20 10:25:47,709 333 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
10:25:50 Image:157
10:25:50 Other imported objects:
10:25:50 Fileset:155
10:25:50
10:25:50 ==> Summary
10:25:50 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.109
10:25:50 + omero obj new Screen name=Screen
10:25:51 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:51 Screen:152
10:25:51 + omero obj new Plate name=Plate
10:25:52 Using session for training_user-2@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group
10:25:52 Plate:153
10:25:52 + omero login training_user@7ef93461c40d:4064 -w ome -g training_group-2
10:25:53 Created session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
10:25:54 + omero obj new Project 'name=Project 0'
10:25:54 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
10:25:54 Project:153
10:25:55 + omero obj new Dataset 'name=Dataset 0'
10:25:55 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
10:25:56 Dataset:156
10:25:56 + omero import test.fake --debug ERROR
10:25:57 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
10:25:57 2024-03-20 10:25:57,731 320 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
10:25:57 2024-03-20 10:25:57,751 340 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 5d76f93745031c4c579e0858696ff3253aab48bb date: 20 March 2024
10:26:01 Image:158
10:26:01 Other imported objects:
10:26:01 Fileset:156
10:26:01
10:26:01 ==> Summary
10:26:01 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.578
10:26:02 + omero obj new Screen name=Screen
10:26:03 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
10:26:03 Screen:153
10:26:03 + omero obj new Plate name=Plate
10:26:04 Using session for training_user@7ef93461c40d:4064. Idle timeout: 10 min. Current group: training_group-2
10:26:04 Plate:154
10:26:04 + omero logout
10:26:05 + echo omero.host=7ef93461c40d
10:26:05 + echo omero.port=4064
10:26:05 + echo omero.webhost=http://nginx/web
10:26:05 + echo omero.servername=omero
10:26:05 + echo omero.user=training_user
10:26:05 + echo omero.pass=ome
10:26:05 + echo omero.group=training_group
10:26:05 + echo omero.projectid=151
10:26:05 + echo omero.datasetid=152
10:26:05 + echo omero.imageid=153
10:26:05 + echo omero.plateid=152
10:26:05 + echo omero.screenid=151
10:26:05 + echo omero.group2=training_group-2
10:26:05 + echo omero.ladmin=ladmin_user
10:26:05 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:26:05 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
10:26:05 + omero sessions clear
10:26:06 1 session(s) cleared
10:26:06 !! 03/20/24 10:26:06.768 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
10:26:06 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
10:26:06 + pip install --upgrade requests
10:26:07 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
10:26:07 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
10:26:07 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6)
10:26:07 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
10:26:07 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
10:26:07 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
10:26:20 Running training suite
10:26:20 created 20 shapes
10:26:20 retrieved 20 shapes in 4 batches
10:26:20 Current user:
10:26:20 ID: 2
10:26:20 Username: training_user
10:26:20 Full Name: training_user training_user
10:26:20 Is Admin: False
10:26:20 []
10:26:20 Member of:
10:26:20 ID: 3 Name: training_group
10:26:20 ID: 4 Name: training_group-2
10:26:20 Current group: training_group
10:26:20 Group owners:
10:26:20 Group members:
10:26:20 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
10:26:20 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
10:26:20 ID: 2 UserName: training_user Name: training_user training_user
10:26:20 Owner of:
10:26:20 Admins:
10:26:20 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
10:26:20 ID: 0 UserName: root Name: root root
10:26:20 Created new Image:159 Name:"numpy image"
10:26:20 newPlane for z,t: 0 0 uint8 0 127
10:26:20 newPlane for z,t: 0 1 uint8 0 127
10:26:20 newPlane for z,t: 0 2 uint8 0 127
10:26:20 newPlane for z,t: 0 3 uint8 0 127
10:26:20 newPlane for z,t: 0 4 uint8 0 127
10:26:20 newPlane for z,t: 0 5 uint8 0 127
10:26:20 newPlane for z,t: 0 6 uint8 0 127
10:26:20 newPlane for z,t: 0 7 uint8 0 127
10:26:20 newPlane for z,t: 0 8 uint8 0 127
10:26:20 newPlane for z,t: 0 9 uint8 0 127
10:26:20 newPlane for z,t: 1 0 uint8 0 127
10:26:20 newPlane for z,t: 1 1 uint8 0 127
10:26:20 newPlane for z,t: 1 2 uint8 0 127
10:26:20 newPlane for z,t: 1 3 uint8 0 127
10:26:20 newPlane for z,t: 1 4 uint8 0 127
10:26:20 newPlane for z,t: 1 5 uint8 0 127
10:26:20 newPlane for z,t: 1 6 uint8 0 127
10:26:20 newPlane for z,t: 1 7 uint8 0 127
10:26:20 newPlane for z,t: 1 8 uint8 0 127
10:26:20 newPlane for z,t: 1 9 uint8 0 127
10:26:20 newPlane for z,t: 2 0 uint8 0 127
10:26:20 newPlane for z,t: 2 1 uint8 0 127
10:26:20 newPlane for z,t: 2 2 uint8 0 127
10:26:20 newPlane for z,t: 2 3 uint8 0 127
10:26:20 newPlane for z,t: 2 4 uint8 0 127
10:26:20 newPlane for z,t: 2 5 uint8 0 127
10:26:20 newPlane for z,t: 2 6 uint8 0 127
10:26:20 newPlane for z,t: 2 7 uint8 0 127
10:26:20 newPlane for z,t: 2 8 uint8 0 127
10:26:20 newPlane for z,t: 2 9 uint8 0 127
10:26:20 newPlane for z,t: 3 0 uint8 0 127
10:26:20 newPlane for z,t: 3 1 uint8 0 127
10:26:20 newPlane for z,t: 3 2 uint8 0 127
10:26:20 newPlane for z,t: 3 3 uint8 0 127
10:26:20 newPlane for z,t: 3 4 uint8 0 127
10:26:20 newPlane for z,t: 3 5 uint8 0 127
10:26:20 newPlane for z,t: 3 6 uint8 0 127
10:26:20 newPlane for z,t: 3 7 uint8 0 127
10:26:20 newPlane for z,t: 3 8 uint8 0 127
10:26:20 newPlane for z,t: 3 9 uint8 0 127
10:26:20 newPlane for z,t: 4 0 uint8 0 127
10:26:20 newPlane for z,t: 4 1 uint8 0 127
10:26:20 newPlane for z,t: 4 2 uint8 0 127
10:26:20 newPlane for z,t: 4 3 uint8 0 127
10:26:20 newPlane for z,t: 4 4 uint8 0 127
10:26:20 newPlane for z,t: 4 5 uint8 0 127
10:26:20 newPlane for z,t: 4 6 uint8 0 127
10:26:20 newPlane for z,t: 4 7 uint8 0 127
10:26:20 newPlane for z,t: 4 8 uint8 0 127
10:26:20 newPlane for z,t: 4 9 uint8 0 127
10:26:20 Deleting, please wait.
10:26:20 Error? False
10:26:20 153 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:26:20 training_user_2/Blitz-0-Ice.ThreadPool.Server-3/2024-03/20/10-25-20.782/ test&sizeT=10&sizeZ=5&sizeC=3.fake
10:26:20 1
10:26:20 training_user_2/Blitz-0-Ice.ThreadPool.Server-3/2024-03/20/10-25-20.782/ test&sizeT=10&sizeZ=5&sizeC=3.fake
10:26:20 Current group: training_group
10:26:20 Permissions: READ-ONLY (rwr---)
10:26:20 Project 1 Owner: training_user training_user
10:26:20 Project 1 Owner: training_user training_user
10:26:20 Project 1 Owner: training_user training_user
10:26:20 Project 1 Owner: training_user training_user
10:26:20 Project 0 Owner: training_user-2 training_user-2
10:26:20 Project 0 Owner: training_user-2 training_user-2
10:26:20 Project 0 Owner: training_user-2 training_user-2
10:26:20 Project 0 Owner: training_user-2 training_user-2
10:26:20 Image: <_ImageWrapper id=153>
10:26:20 Image: <_ImageWrapper id=153> Group: training_group 3
10:26:20 Image: <_ImageWrapper id=153> Channel: 0
10:26:20 Channel: 1
10:26:20 Channel: 2
10:26:20
10:26:20
10:26:20 original_metadata
10:26:20 global_metadata
10:26:20 series_metadata
10:26:20
10:26:20 Plane at zct: 0 0 0
10:26:20 [[ 0 0 0 ... 253 254 255]
10:26:20 [ 0 0 0 ... 253 254 255]
10:26:20 [ 0 0 0 ... 253 254 255]
10:26:20 ...
10:26:20 [ 0 1 2 ... 253 254 255]
10:26:20 [ 0 1 2 ... 253 254 255]
10:26:20 [ 0 1 2 ... 253 254 255]]
10:26:20 shape: (512, 512)
10:26:20 min: 0 max: 255 pixel type: uint8
10:26:20
10:26:20 Z stack of tiles:
10:26:20 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:26:20 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:26:20 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:26:20 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:26:20 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
10:26:20
10:26:20 Hyper stack of planes:
10:26:20 plane zct: (2, 0, 0) min: 0 max: 255
10:26:20 plane zct: (2, 0, 1) min: 0 max: 255
10:26:20 plane zct: (2, 0, 2) min: 0 max: 255
10:26:20 plane zct: (2, 0, 3) min: 0 max: 255
10:26:20 plane zct: (2, 0, 4) min: 0 max: 255
10:26:20 plane zct: (2, 0, 5) min: 0 max: 255
10:26:20 plane zct: (2, 0, 6) min: 0 max: 255
10:26:20 plane zct: (2, 0, 7) min: 0 max: 255
10:26:20 plane zct: (2, 0, 8) min: 0 max: 255
10:26:20 plane zct: (2, 0, 9) min: 0 max: 255
10:26:20 plane zct: (2, 1, 0) min: 0 max: 255
10:26:20 plane zct: (2, 1, 1) min: 0 max: 255
10:26:20 plane zct: (2, 1, 2) min: 0 max: 255
10:26:20 plane zct: (2, 1, 3) min: 0 max: 255
10:26:20 plane zct: (2, 1, 4) min: 0 max: 255
10:26:20 plane zct: (2, 1, 5) min: 0 max: 255
10:26:20 plane zct: (2, 1, 6) min: 0 max: 255
10:26:20 plane zct: (2, 1, 7) min: 0 max: 255
10:26:20 plane zct: (2, 1, 8) min: 0 max: 255
10:26:20 plane zct: (2, 1, 9) min: 0 max: 255
10:26:20 plane zct: (2, 2, 0) min: 0 max: 255
10:26:20 plane zct: (2, 2, 1) min: 0 max: 255
10:26:20 plane zct: (2, 2, 2) min: 0 max: 255
10:26:20 plane zct: (2, 2, 3) min: 0 max: 255
10:26:20 plane zct: (2, 2, 4) min: 0 max: 255
10:26:20 plane zct: (2, 2, 5) min: 0 max: 255
10:26:20 plane zct: (2, 2, 6) min: 0 max: 255
10:26:20 plane zct: (2, 2, 7) min: 0 max: 255
10:26:20 plane zct: (2, 2, 8) min: 0 max: 255
10:26:20 plane zct: (2, 2, 9) min: 0 max: 255
10:26:20 plane zct: (3, 0, 0) min: 0 max: 255
10:26:20 plane zct: (3, 0, 1) min: 0 max: 255
10:26:20 plane zct: (3, 0, 2) min: 0 max: 255
10:26:20 plane zct: (3, 0, 3) min: 0 max: 255
10:26:20 plane zct: (3, 0, 4) min: 0 max: 255
10:26:20 plane zct: (3, 0, 5) min: 0 max: 255
10:26:20 plane zct: (3, 0, 6) min: 0 max: 255
10:26:20 plane zct: (3, 0, 7) min: 0 max: 255
10:26:20 plane zct: (3, 0, 8) min: 0 max: 255
10:26:20 plane zct: (3, 0, 9) min: 0 max: 255
10:26:20 plane zct: (3, 1, 0) min: 0 max: 255
10:26:20 plane zct: (3, 1, 1) min: 0 max: 255
10:26:20 plane zct: (3, 1, 2) min: 0 max: 255
10:26:20 plane zct: (3, 1, 3) min: 0 max: 255
10:26:20 plane zct: (3, 1, 4) min: 0 max: 255
10:26:20 plane zct: (3, 1, 5) min: 0 max: 255
10:26:20 plane zct: (3, 1, 6) min: 0 max: 255
10:26:20 plane zct: (3, 1, 7) min: 0 max: 255
10:26:20 plane zct: (3, 1, 8) min: 0 max: 255
10:26:20 plane zct: (3, 1, 9) min: 0 max: 255
10:26:20 plane zct: (3, 2, 0) min: 0 max: 255
10:26:20 plane zct: (3, 2, 1) min: 0 max: 255
10:26:20 plane zct: (3, 2, 2) min: 0 max: 255
10:26:20 plane zct: (3, 2, 3) min: 0 max: 255
10:26:20 plane zct: (3, 2, 4) min: 0 max: 255
10:26:20 plane zct: (3, 2, 5) min: 0 max: 255
10:26:20 plane zct: (3, 2, 6) min: 0 max: 255
10:26:20 plane zct: (3, 2, 7) min: 0 max: 255
10:26:20 plane zct: (3, 2, 8) min: 0 max: 255
10:26:20 plane zct: (3, 2, 9) min: 0 max: 255
10:26:20 plane zct: (4, 0, 0) min: 0 max: 255
10:26:20 plane zct: (4, 0, 1) min: 0 max: 255
10:26:20 plane zct: (4, 0, 2) min: 0 max: 255
10:26:20 plane zct: (4, 0, 3) min: 0 max: 255
10:26:20 plane zct: (4, 0, 4) min: 0 max: 255
10:26:20 plane zct: (4, 0, 5) min: 0 max: 255
10:26:20 plane zct: (4, 0, 6) min: 0 max: 255
10:26:20 plane zct: (4, 0, 7) min: 0 max: 255
10:26:20 plane zct: (4, 0, 8) min: 0 max: 255
10:26:20 plane zct: (4, 0, 9) min: 0 max: 255
10:26:20 plane zct: (4, 1, 0) min: 0 max: 255
10:26:20 plane zct: (4, 1, 1) min: 0 max: 255
10:26:20 plane zct: (4, 1, 2) min: 0 max: 255
10:26:20 plane zct: (4, 1, 3) min: 0 max: 255
10:26:20 plane zct: (4, 1, 4) min: 0 max: 255
10:26:20 plane zct: (4, 1, 5) min: 0 max: 255
10:26:20 plane zct: (4, 1, 6) min: 0 max: 255
10:26:20 plane zct: (4, 1, 7) min: 0 max: 255
10:26:20 plane zct: (4, 1, 8) min: 0 max: 255
10:26:20 plane zct: (4, 1, 9) min: 0 max: 255
10:26:20 plane zct: (4, 2, 0) min: 0 max: 255
10:26:20 plane zct: (4, 2, 1) min: 0 max: 255
10:26:20 plane zct: (4, 2, 2) min: 0 max: 255
10:26:20 plane zct: (4, 2, 3) min: 0 max: 255
10:26:20 plane zct: (4, 2, 4) min: 0 max: 255
10:26:20 plane zct: (4, 2, 5) min: 0 max: 255
10:26:20 plane zct: (4, 2, 6) min: 0 max: 255
10:26:20 plane zct: (4, 2, 7) min: 0 max: 255
10:26:20 plane zct: (4, 2, 8) min: 0 max: 255
10:26:20 plane zct: (4, 2, 9) min: 0 max: 255
10:26:23 <string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
10:26:24 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
10:26:24
10:26:24 List Projects:
10:26:24 ==================================================
10:26:24 Project:1 Name:"Project 1" (owner=training_user)
10:26:24 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
10:26:24 Image:1 Name:"test.fake" (owner=training_user)
10:26:24 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
10:26:24 Image:12 Name:"New Image" (owner=training_user)
10:26:24 Image:13 Name:"newImageFrom3" (owner=training_user)
10:26:24 Image:2 Name:"test.fake" (owner=training_user)
10:26:24 Dataset:7 Name:"New Dataset" (owner=training_user)
10:26:24 Dataset:17 Name:"new Name 1" (owner=training_user)
10:26:24 Dataset:18 Name:"new Name 2" (owner=training_user)
10:26:24 Project:51 Name:"Project 1" (owner=training_user)
10:26:24 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
10:26:24 Image:51 Name:"test.fake" (owner=training_user)
10:26:24 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
10:26:24 Image:62 Name:"New Image" (owner=training_user)
10:26:24 Image:63 Name:"newImageFrom53" (owner=training_user)
10:26:24 Image:52 Name:"test.fake" (owner=training_user)
10:26:24 Dataset:57 Name:"New Dataset" (owner=training_user)
10:26:24 Dataset:67 Name:"new Name 1" (owner=training_user)
10:26:24 Dataset:68 Name:"new Name 2" (owner=training_user)
10:26:24 Project:101 Name:"Project 1" (owner=training_user)
10:26:24 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
10:26:24 Image:101 Name:"test.fake" (owner=training_user)
10:26:24 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
10:26:24 Image:112 Name:"New Image" (owner=training_user)
10:26:24 Image:113 Name:"newImageFrom103" (owner=training_user)
10:26:24 Image:102 Name:"test.fake" (owner=training_user)
10:26:24 Dataset:107 Name:"New Dataset" (owner=training_user)
10:26:24 Dataset:117 Name:"new Name 1" (owner=training_user)
10:26:24 Dataset:118 Name:"new Name 2" (owner=training_user)
10:26:24 Project:151 Name:"Project 1" (owner=training_user)
10:26:24 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
10:26:24 Image:151 Name:"test.fake" (owner=training_user)
10:26:24 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
10:26:24 Image:152 Name:"test.fake" (owner=training_user)
10:26:24
10:26:24 List orphaned Datasets:
10:26:24 ==================================================
10:26:24 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
10:26:24 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
10:26:24 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
10:26:24 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
10:26:24 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
10:26:24 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
10:26:24 Dataset:10 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:9 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:8 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:11 Name:"New Dataset" (owner=training_user)
10:26:24 Dataset:12 Name:"New Dataset2" (owner=training_user)
10:26:24 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
10:26:24 Dataset:14 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:15 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:16 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:60 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:59 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:58 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:61 Name:"New Dataset" (owner=training_user)
10:26:24 Dataset:62 Name:"New Dataset2" (owner=training_user)
10:26:24 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
10:26:24 Dataset:64 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:65 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:66 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
10:26:24 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
10:26:24 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
10:26:24 Dataset:110 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:109 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:108 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:111 Name:"New Dataset" (owner=training_user)
10:26:24 Dataset:112 Name:"New Dataset2" (owner=training_user)
10:26:24 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
10:26:24 Dataset:114 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:115 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:116 Name:"MyDataset" (owner=training_user)
10:26:24 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
10:26:24 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
10:26:24 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
10:26:24
10:26:24 Images in Dataset: 152
10:26:24 ==================================================
10:26:24 Image:152 Name:"test.fake" (owner=training_user)
10:26:24
10:26:24 Image:153
10:26:24 ==================================================
10:26:24 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:26:24 X: 512
10:26:24 Y: 512
10:26:24 Z: 5
10:26:24 C: 3
10:26:24 T: 10
10:26:24 Channel: 0 Color: (255, 0, 0)
10:26:24 Lookup table: None
10:26:24 Is reverse intensity? False
10:26:24 Channel: 1 Color: (0, 255, 0)
10:26:24 Lookup table: None
10:26:24 Is reverse intensity? False
10:26:24 Channel: 2 Color: (0, 0, 255)
10:26:24 Lookup table: None
10:26:24 Is reverse intensity? False
10:26:24 Pixel Size X: None
10:26:24
10:26:24 List Screens:
10:26:24 ==================================================
10:26:24 Screen:151 Name:"Screen" (owner=training_user)
10:26:24 Plate:151 Name:"Plate" (owner=training_user)
10:26:24 Plate:152 Name:"Plate Name 0" (owner=training_user)
10:26:24 Screen:101 Name:"Screen" (owner=training_user)
10:26:24 Plate:101 Name:"Plate" (owner=training_user)
10:26:24 Plate:102 Name:"Plate Name 0" (owner=training_user)
10:26:24 Screen:51 Name:"Screen" (owner=training_user)
10:26:24 Plate:51 Name:"Plate" (owner=training_user)
10:26:24 Plate:52 Name:"Plate Name 0" (owner=training_user)
10:26:24 Screen:1 Name:"Screen" (owner=training_user)
10:26:24 Plate:1 Name:"Plate" (owner=training_user)
10:26:24 Plate:2 Name:"Plate Name 0" (owner=training_user)
10:26:24 Screen:152 Name:"Screen" (owner=training_user-2)
10:26:24 Screen:102 Name:"Screen" (owner=training_user-2)
10:26:24 Screen:52 Name:"Screen" (owner=training_user-2)
10:26:24 Screen:2 Name:"Screen" (owner=training_user-2)
10:26:24
10:26:24 Plate:152
10:26:24 ==================================================
10:26:24
10:26:24 Number of fields: (0, 0)
10:26:24
10:26:24 Grid size: {'rows': 1, 'columns': 3}
10:26:24
10:26:24 Wells in Plate: Plate Name 0
10:26:24 Well: 0 0 Fields: 1
10:26:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 154
10:26:24 Well: 0 1 Fields: 1
10:26:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 156
10:26:24 Well: 0 2 Fields: 1
10:26:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 155
10:26:24 151 <class 'omero.model.MapAnnotationI'>
10:26:24 added by training_user
10:26:24 Image ID: 153
10:26:24 Annotation ID: 151
10:26:24 153
10:26:24 Channel rendering settings:
10:26:24 Name: 0
10:26:24 Color: FF0000
10:26:24 Active: True
10:26:24 Levels: 0.0 - 255.0
10:26:24 Name: 1
10:26:24 Color: 00FF00
10:26:24 Active: True
10:26:24 Levels: 0.0 - 255.0
10:26:24 Name: 2
10:26:24 Color: 0000FF
10:26:24 Active: True
10:26:24 Levels: 0.0 - 255.0
10:26:24 isGreyscaleRenderingModel: False
10:26:24 Default Z/T positions:
10:26:24 Z = 2, T = 0
10:26:24 Rendering Defs on Image:
10:26:24 ID: 153 (owner: training_user training_user)
10:26:24 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
10:26:24 ROI: ID: 152
10:26:24 Shape: id 171 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
10:26:35 Shape: id 172 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
10:26:35 ROI: ID: 153
10:26:35 Shape: id 173 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
10:26:35 ROI: ID: 154
10:26:35 Shape: id 174 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
10:26:35 ROI: ID: 155
10:26:35 Shape: id 175 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
10:26:35 ROI: ID: 156
10:26:35 <class 'omero.model.PolygonI'> Not supported by this code
10:26:35 Shape: id 176 theT 0 theZ 2 textValue test-Polygon
10:26:35 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
10:26:35 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
10:26:35 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
10:26:35 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
10:26:35 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
10:26:35 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
10:26:35 Removing Shape from ROI...
10:26:35 Deleting ROI: 157
10:26:35 Table Columns:
10:26:35 Uid
10:26:35 MyStringColumnInit
10:26:35 Row count: 10
10:26:35
10:26:35 Get All Data for rows: [3, 5, 7]
10:26:35 Data for Column: Uid
10:26:35 1
10:26:35 2
10:26:35 3
10:26:35 4
10:26:35 5
10:26:35 6
10:26:35 7
10:26:35 8
10:26:35 9
10:26:35 10
10:26:35 Data for Column: MyStringColumnInit
10:26:35 one
10:26:35 two
10:26:35 three
10:26:35 four
10:26:35 five
10:26:35 six
10:26:35 seven
10:26:35 eight
10:26:35 nine
10:26:35 ten
10:26:35
10:26:35 Get All Data for rows with slice: [3, 5, 7]
10:26:35 Data for Column: Uid
10:26:35 4
10:26:35 6
10:26:35 8
10:26:35 Data for Column: MyStringColumnInit
10:26:35 four
10:26:35 six
10:26:35 eight
10:26:35
10:26:35 Get Data for cols: [1] and between rows: 3 - 7
10:26:35 Data for Column: MyStringColumnInit
10:26:35 four
10:26:35 five
10:26:35 six
10:26:35 seven
10:26:35
10:26:35 Get Data for cols: [1] and between rows: 3 - 7 with slice
10:26:35 Data for Column: MyStringColumnInit
10:26:35 four
10:26:35 five
10:26:35 six
10:26:35 seven
10:26:35 Query Results for Column: Uid
10:26:35 3
10:26:35 4
10:26:35 5
10:26:35 6
10:26:35 7
10:26:35 8
10:26:35 Query Results for Column: MyStringColumnInit
10:26:35 three
10:26:35 four
10:26:35 five
10:26:35 six
10:26:35 seven
10:26:35 eight
10:26:35 Opened table with row-count: 10
10:26:35 New dataset, Id: 157
10:26:35 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
10:26:35 155 <class 'omero.model.TagAnnotationI'> added by training_user
10:26:35 Tag value: New Tag
10:26:35 156 <class 'omero.model.MapAnnotationI'> added by training_user
10:26:35
10:26:35 Creating an OriginalFile and FileAnnotation
10:26:35 Attaching FileAnnotation to Dataset: File ID: 157 , README.txt Size: 15
10:26:35
10:26:35 Annotations on Dataset: New Dataset
10:26:35 File ID: 449 README.txt Size: 15
10:26:35
10:26:35 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
10:26:35 File downloaded!
10:26:35 7 README.txt
10:26:35 57 README.txt
10:26:35 107 README.txt
10:26:35 157 README.txt
10:26:35 Found Annotation with namespace: imperial.training.demo
10:26:35 Plane: 0 0 0
10:26:35 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
10:26:35 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
10:26:35
10:26:35 List Datasets:
10:26:35 ID: 10 Name: MyDataset
10:26:35 ID: 9 Name: MyDataset
10:26:35 ID: 8 Name: MyDataset
10:26:35 ID: 14 Name: MyDataset
10:26:35 ID: 15 Name: MyDataset
10:26:35 ID: 16 Name: MyDataset
10:26:35 ID: 60 Name: MyDataset
10:26:35 ID: 59 Name: MyDataset
10:26:35 ID: 58 Name: MyDataset
10:26:35 ID: 64 Name: MyDataset
10:26:35 ID: 65 Name: MyDataset
10:26:35 ID: 66 Name: MyDataset
10:26:35 ID: 110 Name: MyDataset
10:26:35 ID: 109 Name: MyDataset
10:26:35 ID: 108 Name: MyDataset
10:26:35 ID: 114 Name: MyDataset
10:26:35 ID: 115 Name: MyDataset
10:26:35 ID: 116 Name: MyDataset
10:26:35 ID: 160 Name: MyDataset
10:26:35 ID: 159 Name: MyDataset
10:26:35 ID: 158 Name: MyDataset
10:26:35
10:26:35 List Tags:
10:26:35 ID: 8 Text: MyTag Desc: MyTag 0
10:26:35 ID: 9 Text: MyTag Desc: MyTag 1
10:26:35 ID: 10 Text: MyTag Desc: MyTag 2
10:26:35 ID: 16 Text: MyTag Desc: MyTag 0
10:26:35 ID: 17 Text: MyTag Desc: MyTag 1
10:26:35 ID: 18 Text: MyTag Desc: MyTag 2
10:26:35 ID: 58 Text: MyTag Desc: MyTag 0
10:26:35 ID: 59 Text: MyTag Desc: MyTag 1
10:26:35 ID: 60 Text: MyTag Desc: MyTag 2
10:26:35 ID: 66 Text: MyTag Desc: MyTag 0
10:26:35 ID: 67 Text: MyTag Desc: MyTag 1
10:26:35 ID: 68 Text: MyTag Desc: MyTag 2
10:26:35 ID: 108 Text: MyTag Desc: MyTag 0
10:26:35 ID: 109 Text: MyTag Desc: MyTag 1
10:26:35 ID: 110 Text: MyTag Desc: MyTag 2
10:26:35 ID: 116 Text: MyTag Desc: MyTag 0
10:26:35 ID: 117 Text: MyTag Desc: MyTag 1
10:26:35 ID: 118 Text: MyTag Desc: MyTag 2
10:26:35 ID: 158 Text: MyTag Desc: MyTag 0
10:26:35 ID: 159 Text: MyTag Desc: MyTag 1
10:26:35 ID: 160 Text: MyTag Desc: MyTag 2
10:26:35 New dataset, Id: 161
10:26:35 New dataset 2, Id: 162
10:26:35 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:26:35 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
10:26:35 [[ 0 0 0 ... 102 103 104]
10:26:35 [ 0 0 0 ... 102 103 104]
10:26:35 [ 0 0 0 ... 102 103 104]
10:26:35 ...
10:26:35 [ 5 6 7 ... 102 103 104]
10:26:35 [ 5 6 7 ... 102 103 104]
10:26:35 [ 5 6 7 ... 102 103 104]]
10:26:35 shape: (100, 100)
10:26:35 min: 0 max: 104 pixel type: uint8
10:26:35 Average : 53.9125
10:26:35 Getting data for T, tile: 0 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 1 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 2 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 3 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 4 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 5 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 6 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 7 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 8 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 9 (256.0, 0, 10, 512)
10:26:35 kymograph_data (512, 100)
10:26:35 Attaching kymograph.png to image
10:26:35 test&sizeT=10&sizeZ=5&sizeC=3.fake
10:26:35 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
10:26:35 [[ 0 0 0 ... 102 103 104]
10:26:35 [ 0 0 0 ... 102 103 104]
10:26:35 [ 0 0 0 ... 102 103 104]
10:26:35 ...
10:26:35 [ 5 6 7 ... 102 103 104]
10:26:35 [ 5 6 7 ... 102 103 104]
10:26:35 [ 5 6 7 ... 102 103 104]]
10:26:35 shape: (100, 100)
10:26:35 min: 0 max: 104 pixel type: uint8
10:26:35 Average : 53.9125
10:26:35 Getting data for T, tile: 0 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 1 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 2 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 3 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 4 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 5 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 6 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 7 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 8 (256.0, 0, 10, 512)
10:26:35 Getting data for T, tile: 9 (256.0, 0, 10, 512)
10:26:35 kymograph_data (512, 100)
10:26:35 Attaching kymograph.png to image
10:26:35 No file downloaded. Project not rated.
10:26:35 New image, Id: 162
10:26:35 Starting at: http://nginx/web/api/
10:26:35 CSRF token hxfps2DexTcglWntjhoi2wihtgkxYe3aw92C2tiDJmGmZL80j1SW9DKqbpxk3Ern
10:26:35 Servers:
10:26:35 -id: 1
10:26:35 name: omero
10:26:35 host: omero
10:26:35 port: 4064
10:26:35 -id: 2
10:26:35 name: testintegration
10:26:35 host: testintegration
10:26:35 port: 14064
10:26:35 eventContext {'sessionId': 668, 'sessionUuid': '3c69e060-0235-4778-b0ea-3bf78cccd8ab', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
10:26:35 Projects:
10:26:35 2 Project 0
10:26:35 3 Project 0
10:26:35 Created Project: 156 API TEST foo
10:26:36 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 156, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/156/datasets/'}}
10:26:36 !! 03/20/24 10:26:36.275 error: communicator not destroyed during global destruction.+ deactivate
10:26:36 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:26:36 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:26:36 + export PATH
10:26:36 + unset _OLD_VIRTUAL_PATH
10:26:36 + '[' -n '' ']'
10:26:36 + '[' -n /bin/bash -o -n '' ']'
10:26:36 + hash -r
10:26:36 + '[' -n '' ']'
10:26:36 + unset VIRTUAL_ENV
10:26:36 + '[' '!' '' = nondestructive ']'
10:26:36 + unset -f deactivate
10:26:36 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
10:26:36 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
10:26:38 Note: Some input files use unchecked or unsafe operations.
10:26:38 Note: Recompile with -Xlint:unchecked for details.
10:26:38 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
10:26:43 omero.cmd.Delete2Response@73c60324
10:26:44 omero.cmd.Delete2Response@28276e50
10:26:44 one [class java.lang.String] 1.0 [class java.lang.Double]
10:26:44 two [class java.lang.String] 2.0 [class java.lang.Double]
10:26:44 three [class java.lang.String] 3.0 [class java.lang.Double]
10:26:44 -1.0
10:26:44 0
10:26:44 1
10:26:44 2
10:26:49 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
10:26:49 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
10:26:49 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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10:26:50 Project:151 Project 1
10:26:50 dataset:152 Dataset 1-2
10:26:50 dataset:157 New Dataset
10:26:50 dataset:151 Dataset 1-1
10:26:50 Project:102 Project 0
10:26:50 Project:1 Project 1
10:26:50 dataset:18 new Name 2
10:26:50 dataset:2 Dataset 1-2
10:26:50 dataset:7 New Dataset
10:26:50 dataset:17 new Name 1
10:26:50 dataset:1 Dataset 1-1
10:26:50 Project:101 Project 1
10:26:50 dataset:107 New Dataset
10:26:50 dataset:102 Dataset 1-2
10:26:50 dataset:101 Dataset 1-1
10:26:50 dataset:117 new Name 1
10:26:50 dataset:118 new Name 2
10:26:50 Project:2 Project 0
10:26:50 Project:51 Project 1
10:26:50 dataset:57 New Dataset
10:26:50 dataset:52 Dataset 1-2
10:26:50 dataset:68 new Name 2
10:26:50 dataset:51 Dataset 1-1
10:26:50 dataset:67 new Name 1
10:26:50 Project:52 Project 0
10:26:50 Project:152 Project 0
10:26:50 image:152 test.fake
10:26:50 image:162 New Image
10:26:50 image:163 newImageFrom153
10:26:50 5
10:26:50 10
10:26:50 3
10:26:50 512
10:26:50 512
10:26:50 screen:52 Screen
10:26:50 screen:152 Screen
10:26:50 screen:2 Screen
10:26:50 screen:102 Screen
10:26:50 screen:151 Screen
10:26:50 plate:151 Plate
10:26:50 plate:152 Plate Name 0
10:26:50 screen:1 Screen
10:26:50 plate:2 Plate Name 0
10:26:50 plate:1 Plate
10:26:50 screen:51 Screen
10:26:50 plate:51 Plate
10:26:50 plate:52 Plate Name 0
10:26:50 screen:101 Screen
10:26:50 plate:102 Plate Name 0
10:26:50 plate:101 Plate
10:26:50 well:153
10:26:50 well:152
10:26:50 well:151
10:26:50 plate:103
10:26:50 plate:3
10:26:50 plate:102
10:26:50 plate:152
10:26:50 plate:1
10:26:50 plate:101
10:26:50 plate:51
10:26:50 plate:151
10:26:50 plate:53
10:26:50 plate:153
10:26:50 plate:52
10:26:50 plate:2
10:26:50
10:26:50 List Datasets:
10:26:50 ID: 8 Name: MyDataset
10:26:50 ID: 9 Name: MyDataset
10:26:50 ID: 10 Name: MyDataset
10:26:50 ID: 14 Name: MyDataset
10:26:50 ID: 15 Name: MyDataset
10:26:50 ID: 16 Name: MyDataset
10:26:50 ID: 58 Name: MyDataset
10:26:50 ID: 59 Name: MyDataset
10:26:50 ID: 60 Name: MyDataset
10:26:50 ID: 64 Name: MyDataset
10:26:50
10:26:50 List Tags:
10:26:50 ID: 16 NS: omero.training.demo
10:26:50 ID: 17 NS: omero.training.demo
10:26:50 ID: 18 NS: omero.training.demo
10:26:50 ID: 66 NS: omero.training.demo
10:26:50 ID: 67 NS: omero.training.demo
10:26:50 ID: 68 NS: omero.training.demo
10:26:50 ID: 116 NS: omero.training.demo
10:26:50 ID: 117 NS: omero.training.demo
10:26:50 ID: 118 NS: omero.training.demo
10:26:50 ID: 166 NS: omero.training.demo
10:26:50 Dataset:3 Orphaned dataset 1
10:26:50 Dataset:53 Orphaned dataset 1
10:26:50 Dataset:64 MyDataset
10:26:50 Dataset:110 MyDataset
10:26:50 Dataset:158 MyDataset
10:26:50 Dataset:111 New Dataset
10:26:50 Dataset:115 MyDataset
10:26:50 Dataset:62 New Dataset2
10:26:50 Dataset:9 MyDataset
10:26:50 Dataset:153 Orphaned dataset 1
10:26:50 Dataset:65 MyDataset
10:26:50 Dataset:103 Orphaned dataset 1
10:26:50 Dataset:63 FileAnnotationDelete
10:26:50 Project:151 Project 1
10:26:50 Dataset:61 New Dataset
10:26:50 Project:51 Project 1
10:26:50 Project:101 Project 1
10:26:50 Dataset:54 Orphaned dataset 2
10:26:50 Dataset:12 New Dataset2
10:26:50 Dataset:58 MyDataset
10:26:50 Dataset:15 MyDataset
10:26:50 Dataset:108 MyDataset
10:26:50 Dataset:165 MyDataset
10:26:50 Dataset:166 MyDataset
10:26:50 Dataset:164 MyDataset
10:26:50 Dataset:160 MyDataset
10:26:50 Dataset:66 MyDataset
10:26:50 Dataset:59 MyDataset
10:26:50 Dataset:163 FileAnnotationDelete
10:26:50 Project:1 Project 1
10:26:50 Dataset:13 FileAnnotationDelete
10:26:50 Dataset:60 MyDataset
10:26:50 Dataset:104 Orphaned dataset 2
10:26:50 Dataset:162 New Dataset2
10:26:50 Dataset:161 New Dataset
10:26:50 Dataset:4 Orphaned dataset 2
10:26:50 Dataset:14 MyDataset
10:26:50 Dataset:112 New Dataset2
10:26:50 Dataset:159 MyDataset
10:26:50 Dataset:116 MyDataset
10:26:50 Dataset:10 MyDataset
10:26:50 Dataset:16 MyDataset
10:26:50 Dataset:154 Orphaned dataset 2
10:26:50 Dataset:113 FileAnnotationDelete
10:26:50 Dataset:109 MyDataset
10:26:50 Dataset:114 MyDataset
10:26:50 Dataset:11 New Dataset
10:26:50 Dataset:8 MyDataset
10:26:50 Size:0
10:26:51 512 512
10:26:52 9
10:26:52 9
10:26:52 1
10:26:53 Logged in as ladmin_user
10:26:54 Added 'training_user's tag' to dataset New Dataset on behalf of training_user
10:26:54 Added 'ladmin_user's tag' to dataset New Dataset as admin.
10:26:54 Finished: SUCCESS
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