Skipping 127 KB..
Full Log inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:03:30 creating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:03:30 creating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:03:30 creating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__1/
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:03:30 creating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__2/
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:03:30 creating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__3/
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:03:30 creating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/schema.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/views.sql
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/test.xml
01:03:30 inflating: openmicroscopy-5.6.3-437-964aac1678-ice36/update_dependencies.sh
01:03:30 extracting: openmicroscopy-5.6.3-437-964aac1678-ice36/components/antlib/resources/gitversion.xml
01:03:30 extracting: openmicroscopy-5.6.3-437-964aac1678-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
01:03:30 + rm -f openmicroscopy-5.6.3-437-964aac1678-ice36.zip
01:03:30 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-964aac1678-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
01:03:30 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:03:30 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:03:30 ++ ls OMERO.server-5.6.3-437-964aac1678-ice36.zip
01:03:30 + ZIP=OMERO.server-5.6.3-437-964aac1678-ice36.zip
01:03:30 + DIST=OMERO.server-5.6.3-437-964aac1678-ice36
01:03:30 + unzip -n OMERO.server-5.6.3-437-964aac1678-ice36.zip
01:03:30 Archive: OMERO.server-5.6.3-437-964aac1678-ice36.zip
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/blitz/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/grid/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/profiles/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/error/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/grid/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/luts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/luts/janelia/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/luts/ncsa_paledit/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/luts/wcif/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/omero/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/omero/analysis_scripts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/omero/annotation_scripts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/omero/export_scripts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/omero/figure_scripts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/omero/import_scripts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/scripts/omero/util_scripts/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/server/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/share/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/share/licenses/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/misc/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__1/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__10/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__11/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__2/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__3/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__4/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__5/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__6/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__7/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__8/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3A__9/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3__4/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3__5/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3__6/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO3__7/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO4.1__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO4.2__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO4.2__0/t/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO4.3__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO4.4__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO4__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.0__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.1__1/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__1/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__2/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__3/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/
01:03:30 creating: OMERO.server-5.6.3-437-964aac1678-ice36/var/
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/LICENSE.txt
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/backup.cfg
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/blitz/mail-senders.example
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/blitz/mail-server.example
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/build.properties
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/env.bat
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/env.sh
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/hibernate.properties
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/ice.config
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/logback-cli.xml
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/logback-indexing-cli.xml
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/logback-indexing.xml
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/logback.xml
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/mime.types
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/node1.cfg
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/node2.cfg
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/omero.properties
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/profiles/psql
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/rollover.cfg
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/Windows.cfg
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/error/maintainance.html
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/grid/README
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/grid/default.xml
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/grid/templates.xml
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/grid/windefault.xml
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/ice.config
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/internal.cfg
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/master.cfg
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/templates/robot.template
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/etc/testdropbox.config
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/history.rst
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/OMEZarrReader.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/activation.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/aggdesigner-algorithm.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/aircompressor.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/annotations.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/antlr.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/aopalliance.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/apache-client.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/arns.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/auth.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/avatica-core.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/avatica-metrics.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/aws-core.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/aws-query-protocol.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/aws-xml-protocol.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/base.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-all.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-anim.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-awt-util.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-bridge.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-codec.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-constants.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-css.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-dom.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-ext.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-extension.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-gui-util.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-gvt.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-i18n.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-parser.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-rasterizer-ext.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-rasterizer.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-script.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-slideshow.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-squiggle-ext.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-squiggle.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-svg-dom.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-svgbrowser.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-svggen.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-svgpp.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-svgrasterizer.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-swing.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-transcoder.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-ttf2svg.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-util.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/batik-xml.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/btm.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/bufr.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/c3p0.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/calcite-core.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/calcite-linq4j.jar
01:03:30 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/lib/client/cdm-core.jar
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01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/schema.sql
01:03:33 inflating: OMERO.server-5.6.3-437-964aac1678-ice36/sql/psql/OMERO5.4__0/views.sql
01:03:33 + rm -f OMERO.server-5.6.3-437-964aac1678-ice36.zip
01:03:33 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-964aac1678-ice36 /home/omero/workspace/OMERO-training/OMERO.server
01:03:33 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
01:03:33 ++ deactivate nondestructive
01:03:33 ++ '[' -n '' ']'
01:03:33 ++ '[' -n '' ']'
01:03:33 ++ '[' -n /bin/bash -o -n '' ']'
01:03:33 ++ hash -r
01:03:33 ++ '[' -n '' ']'
01:03:33 ++ unset VIRTUAL_ENV
01:03:33 ++ '[' '!' nondestructive = nondestructive ']'
01:03:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
01:03:33 ++ export VIRTUAL_ENV
01:03:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:33 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:33 ++ export PATH
01:03:33 ++ '[' -n '' ']'
01:03:33 ++ '[' -z '' ']'
01:03:33 ++ _OLD_VIRTUAL_PS1=
01:03:33 ++ PS1='(.venv3) '
01:03:33 ++ export PS1
01:03:33 ++ '[' -n /bin/bash -o -n '' ']'
01:03:33 ++ hash -r
01:03:33 + for x in *.gz
01:03:33 + pip install omero-dropbox-5.6.3.dev0.tar.gz
01:03:33 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
01:03:33 Installing build dependencies: started
01:03:35 Installing build dependencies: finished with status 'done'
01:03:35 Getting requirements to build wheel: started
01:03:35 Getting requirements to build wheel: finished with status 'done'
01:03:35 Installing backend dependencies: started
01:03:36 Installing backend dependencies: finished with status 'done'
01:03:36 Preparing metadata (pyproject.toml): started
01:03:37 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:37 Collecting omero-py (from omero-dropbox==5.6.3.dev0)
01:03:37 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
01:03:37 Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:37 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
01:03:37 Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:37 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:03:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
01:03:37 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
01:03:37 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:37 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
01:03:37 Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:37 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:03:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
01:03:38 Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:38 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
01:03:38 Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
01:03:38 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
01:03:38 Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:03:38 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
01:03:38 Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:03:38 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
01:03:38 Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:03:38 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
01:03:38 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
01:03:38 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:03:38 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
01:03:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:03:38 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
01:03:38 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
01:03:38 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
01:03:38 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
01:03:38 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
01:03:38 Using cached idna-3.6-py3-none-any.whl (61 kB)
01:03:38 Building wheels for collected packages: omero-dropbox
01:03:38 Building wheel for omero-dropbox (pyproject.toml): started
01:03:39 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:03:39 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=d970400593c45cbf825d2cc2cd19973fdfb7697b16983e3e0387b492eed65b0f
01:03:39 Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43
01:03:39 Successfully built omero-dropbox
01:03:39 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
01:03:42 Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
01:03:42 + for x in *.gz
01:03:42 + pip install omero_marshal-0.9.1.dev0.tar.gz
01:03:43 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:03:43 Installing build dependencies: started
01:03:45 Installing build dependencies: finished with status 'done'
01:03:45 Getting requirements to build wheel: started
01:03:45 Getting requirements to build wheel: finished with status 'done'
01:03:45 Installing backend dependencies: started
01:03:46 Installing backend dependencies: finished with status 'done'
01:03:46 Preparing metadata (pyproject.toml): started
01:03:46 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:46 Building wheels for collected packages: omero_marshal
01:03:46 Building wheel for omero_marshal (pyproject.toml): started
01:03:47 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:03:47 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=9c872ba9629117f5c2e0ad988a16e30e749d3004db88fcabd5a24a8be0c991cb
01:03:47 Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
01:03:47 Successfully built omero_marshal
01:03:47 Installing collected packages: omero_marshal
01:03:47 Successfully installed omero_marshal-0.9.1.dev0
01:03:47 + for x in *.gz
01:03:47 + pip install omero-py-5.19.1.dev0.tar.gz
01:03:48 Processing ./omero-py-5.19.1.dev0.tar.gz
01:03:48 Installing build dependencies: started
01:03:50 Installing build dependencies: finished with status 'done'
01:03:50 Getting requirements to build wheel: started
01:03:50 Getting requirements to build wheel: finished with status 'done'
01:03:50 Installing backend dependencies: started
01:03:51 Installing backend dependencies: finished with status 'done'
01:03:51 Preparing metadata (pyproject.toml): started
01:03:52 Preparing metadata (pyproject.toml): finished with status 'done'
01:03:52 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
01:03:52 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
01:03:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
01:03:52 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
01:03:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
01:03:52 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
01:03:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
01:03:52 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
01:03:52 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
01:03:52 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
01:03:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
01:03:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
01:03:52 Building wheels for collected packages: omero-py
01:03:52 Building wheel for omero-py (pyproject.toml): started
01:03:53 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:03:53 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781683 sha256=333be7ead9be0d07dbcea9f2502a27b4f7355d9ec62a236817b5d81bfcf1ba12
01:03:53 Stored in directory: /home/omero/.cache/pip/wheels/0f/f4/17/8aed7bcc59ee680e04154ad77e9d7c203954875e9f0e1940d5
01:03:53 Successfully built omero-py
01:03:53 Installing collected packages: omero-py
01:03:53 Attempting uninstall: omero-py
01:03:53 Found existing installation: omero-py 5.19.0
01:03:53 Uninstalling omero-py-5.19.0:
01:03:53 Successfully uninstalled omero-py-5.19.0
01:03:56 Successfully installed omero-py-5.19.1.dev0
01:03:56 + for x in *.gz
01:03:56 + pip install omero-scripts-5.8.1.dev0.tar.gz
01:03:56 Processing ./omero-scripts-5.8.1.dev0.tar.gz
01:03:56 Installing build dependencies: started
01:03:58 Installing build dependencies: finished with status 'done'
01:03:58 Getting requirements to build wheel: started
01:03:59 Getting requirements to build wheel: finished with status 'done'
01:03:59 Installing backend dependencies: started
01:04:00 Installing backend dependencies: finished with status 'done'
01:04:00 Preparing metadata (pyproject.toml): started
01:04:00 Preparing metadata (pyproject.toml): finished with status 'done'
01:04:00 Building wheels for collected packages: omero-scripts
01:04:00 Building wheel for omero-scripts (pyproject.toml): started
01:04:00 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:04:00 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=d8eea4f584d7423fef82d16be2dbe75eefea5c15d26cb980bbada7da48247824
01:04:00 Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196
01:04:00 Successfully built omero-scripts
01:04:00 Installing collected packages: omero-scripts
01:04:01 Successfully installed omero-scripts-5.8.1.dev0
01:04:01 + for x in *.gz
01:04:01 + pip install omero-web-5.25.1.dev0.tar.gz
01:04:01 Processing ./omero-web-5.25.1.dev0.tar.gz
01:04:01 Installing build dependencies: started
01:04:03 Installing build dependencies: finished with status 'done'
01:04:03 Getting requirements to build wheel: started
01:04:04 Getting requirements to build wheel: finished with status 'done'
01:04:04 Installing backend dependencies: started
01:04:05 Installing backend dependencies: finished with status 'done'
01:04:05 Preparing metadata (pyproject.toml): started
01:04:06 Preparing metadata (pyproject.toml): finished with status 'done'
01:04:06 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
01:04:06 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
01:04:06 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:04:06 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
01:04:06 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
01:04:06 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
01:04:06 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:04:06 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
01:04:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:04:06 Collecting django-csp (from omero-web==5.25.1.dev0)
01:04:06 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:04:06 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
01:04:06 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
01:04:06 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
01:04:06 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
01:04:06 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
01:04:06 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
01:04:07 Collecting pytz (from omero-web==5.25.1.dev0)
01:04:07 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
01:04:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
01:04:07 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
01:04:07 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:04:07 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:04:07 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:04:07 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
01:04:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
01:04:07 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
01:04:07 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
01:04:07 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
01:04:07 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
01:04:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
01:04:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
01:04:07 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:04:07 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
01:04:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
01:04:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
01:04:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
01:04:07 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:04:07 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:04:07 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:04:07 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
01:04:07 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
01:04:07 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
01:04:07 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:04:07 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
01:04:07 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:04:07 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
01:04:07 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
01:04:07 Building wheels for collected packages: omero-web
01:04:07 Building wheel for omero-web (pyproject.toml): started
01:04:09 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:04:09 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=20403830a93e57e849284c4d374225f8c2da3b0963206b9bba44fd8751add1e0
01:04:09 Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7
01:04:09 Successfully built omero-web
01:04:09 Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
01:04:12 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
01:04:12 + cd /home/omero/workspace/OMERO-training/OMERO.server
01:04:12 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
01:04:12 + HOSTNAME=d6309de3f85a
01:04:12 + PORT=4064
01:04:12 + WEBHOST=http://nginx/web
01:04:12 + SERVER_NAME=omero
01:04:12 + ROOT_PASSWORD=omero
01:04:12 + GROUP_NAME=training_group
01:04:12 + GROUP_NAME_2=training_group-2
01:04:12 + USER_NAME=training_user
01:04:12 + USER_NAME_2=training_user-2
01:04:12 + LIGHTADMIN_USER_NAME=ladmin_user
01:04:12 + USER_PASSWORD=ome
01:04:12 + CONFIG_FILENAME=training_ice.config
01:04:12 + omero login root@d6309de3f85a:4064 -w omero
01:04:14 Created session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:14 + omero group add training_group --type read-only --ignore-existing
01:04:15 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:15 Group exists: training_group (id=3)
01:04:15 + omero group add training_group-2 --type read-only --ignore-existing
01:04:16 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:16 Group exists: training_group-2 (id=4)
01:04:16 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
01:04:17 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:17 User exists: training_user (id=2)
01:04:17 + omero user joingroup --name training_user --group-name training_group training_group-2
01:04:18 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:18 2 is already in group 3
01:04:18 2 is already in group 4
01:04:18 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
01:04:19 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:19 User exists: training_user-2 (id=3)
01:04:19 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
01:04:20 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:20 3 is already in group 3
01:04:20 3 is already in group 4
01:04:20 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
01:04:21 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:21 User exists: ladmin_user (id=4)
01:04:21 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
01:04:22 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:22 4 is already in group 3
01:04:22 4 is already in group 4
01:04:22 ++ omero user info ladmin_user --style plain
01:04:22 ++ cut -d, -f1
01:04:23 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:24 + id=4
01:04:24 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
01:04:25 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:04:25 Experimenter:4
01:04:25 + omero logout
01:04:26 + touch test.fake
01:04:26 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group
01:04:27 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:28 + nProjects=1
01:04:28 + nDatasets=2
01:04:28 + echo 'Creating projects and datasets'
01:04:28 Creating projects and datasets
01:04:28 + (( i=1 ))
01:04:28 + (( i<=1 ))
01:04:28 ++ omero obj new Project 'name=Project 1'
01:04:29 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:29 + project=Project:351
01:04:29 + (( j=1 ))
01:04:29 + (( j<=2 ))
01:04:29 ++ omero obj new Dataset 'name=Dataset 1-1'
01:04:30 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:30 + dataset=Dataset:401
01:04:30 + omero obj new ProjectDatasetLink parent=Project:351 child=Dataset:401
01:04:31 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:31 ProjectDatasetLink:351
01:04:32 + echo 'Importing image into dataset'
01:04:32 Importing image into dataset
01:04:32 + omero import -d Dataset:401 test.fake --debug ERROR
01:04:32 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:33 2024-03-24 01:04:33,580 331 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:04:33 2024-03-24 01:04:33,599 350 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: d9f573f3b13f116319f16ec3fb67a2cb1f4f95e0 date: 24 March 2024
01:04:41 Image:2601
01:04:41 Other imported objects:
01:04:41 Fileset:1951
01:04:41
01:04:41 ==> Summary
01:04:41 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:05.925
01:04:42 + (( j++ ))
01:04:42 + (( j<=2 ))
01:04:42 ++ omero obj new Dataset 'name=Dataset 1-2'
01:04:43 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:43 + dataset=Dataset:402
01:04:43 + omero obj new ProjectDatasetLink parent=Project:351 child=Dataset:402
01:04:44 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:44 ProjectDatasetLink:352
01:04:44 + echo 'Importing image into dataset'
01:04:44 Importing image into dataset
01:04:44 + omero import -d Dataset:402 test.fake --debug ERROR
01:04:45 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:45 2024-03-24 01:04:45,867 284 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:04:45 2024-03-24 01:04:45,886 303 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: d9f573f3b13f116319f16ec3fb67a2cb1f4f95e0 date: 24 March 2024
01:04:49 Image:2602
01:04:49 Other imported objects:
01:04:49 Fileset:1952
01:04:49
01:04:49 ==> Summary
01:04:49 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.865
01:04:49 + (( j++ ))
01:04:49 + (( j<=2 ))
01:04:49 + (( i++ ))
01:04:49 + (( i<=1 ))
01:04:49 + (( j=1 ))
01:04:49 + (( j<=2 ))
01:04:49 + omero obj new Dataset 'name=Orphaned dataset 1'
01:04:50 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:50 Dataset:403
01:04:50 + (( j++ ))
01:04:50 + (( j<=2 ))
01:04:50 + omero obj new Dataset 'name=Orphaned dataset 2'
01:04:51 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:51 Dataset:404
01:04:52 + (( j++ ))
01:04:52 + (( j<=2 ))
01:04:52 + echo 'Importing image file'
01:04:52 Importing image file
01:04:52 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:04:52 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:04:57 ++ sed -n -e 's/^Image://p' image_import.log
01:04:57 + imageid=2603
01:04:57 ++ omero obj new MapAnnotation
01:04:58 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:04:59 + MAP=MapAnnotation:1451
01:04:59 + omero obj map-set MapAnnotation:1451 mapValue testkey testvalue
01:04:59 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:00 MapAnnotation:1451
01:05:00 + omero obj new ImageAnnotationLink parent=Image:2603 child=MapAnnotation:1451
01:05:01 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:01 ImageAnnotationLink:451
01:05:01 ++ omero obj new Screen name=Screen
01:05:02 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:03 + screen=Screen:251
01:05:03 ++ omero obj new Plate name=Plate
01:05:05 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:05 + plate=Plate:351
01:05:05 + omero obj new ScreenPlateLink parent=Screen:251 child=Plate:351
01:05:06 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:06 ScreenPlateLink:251
01:05:06 + echo 'Importing SPW file'
01:05:06 Importing SPW file
01:05:06 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:05:06 + omero import -r Screen:251 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:05:14 ++ sed -n -e 's/^Plate://p' plate_import.log
01:05:14 + plateid=352
01:05:14 + omero logout
01:05:16 + omero login training_user-2@d6309de3f85a:4064 -w ome -g training_group
01:05:17 Created session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:17 + omero obj new Project 'name=Project 0'
01:05:18 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:18 Project:352
01:05:18 + omero obj new Dataset 'name=Dataset 0'
01:05:19 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:19 Dataset:405
01:05:20 + omero import test.fake --debug ERROR
01:05:21 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:22 2024-03-24 01:05:22,584 396 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:05:22 2024-03-24 01:05:22,610 422 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: d9f573f3b13f116319f16ec3fb67a2cb1f4f95e0 date: 24 March 2024
01:05:26 Image:2607
01:05:26 Other imported objects:
01:05:26 Fileset:1955
01:05:26
01:05:26 ==> Summary
01:05:26 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.824
01:05:26 + omero obj new Screen name=Screen
01:05:27 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:27 Screen:252
01:05:27 + omero obj new Plate name=Plate
01:05:28 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:05:28 Plate:353
01:05:29 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group-2
01:05:30 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:30 + omero obj new Project 'name=Project 0'
01:05:31 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:31 Project:353
01:05:31 + omero obj new Dataset 'name=Dataset 0'
01:05:32 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:32 Dataset:406
01:05:32 + omero import test.fake --debug ERROR
01:05:33 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:34 2024-03-24 01:05:34,248 337 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:05:34 2024-03-24 01:05:34,270 359 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: d9f573f3b13f116319f16ec3fb67a2cb1f4f95e0 date: 24 March 2024
01:05:39 Image:2608
01:05:39 Other imported objects:
01:05:39 Fileset:1956
01:05:39
01:05:39 ==> Summary
01:05:39 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.678
01:05:39 + omero obj new Screen name=Screen
01:05:40 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:40 Screen:253
01:05:41 + omero obj new Plate name=Plate
01:05:42 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:05:42 Plate:354
01:05:42 + omero logout
01:05:43 + echo omero.host=d6309de3f85a
01:05:43 + echo omero.port=4064
01:05:43 + echo omero.webhost=http://nginx/web
01:05:43 + echo omero.servername=omero
01:05:43 + echo omero.user=training_user
01:05:43 + echo omero.pass=ome
01:05:43 + echo omero.group=training_group
01:05:43 + echo omero.projectid=351
01:05:43 + echo omero.datasetid=402
01:05:43 + echo omero.imageid=2603
01:05:43 + echo omero.plateid=352
01:05:43 + echo omero.screenid=251
01:05:43 + echo omero.group2=training_group-2
01:05:43 + echo omero.ladmin=ladmin_user
01:05:43 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:05:43 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:05:43 + omero sessions clear
01:05:44 1 session(s) cleared
01:05:44 !! 03/24/24 01:05:44.902 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:05:44 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:05:44 + pip install --upgrade requests
01:05:45 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
01:05:45 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
01:05:45 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6)
01:05:45 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
01:05:45 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
01:05:45 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:05:59 Running training suite
01:05:59 created 20 shapes
01:05:59 retrieved 20 shapes in 4 batches
01:05:59 Current user:
01:05:59 ID: 2
01:05:59 Username: training_user
01:05:59 Full Name: training_user training_user
01:05:59 Is Admin: False
01:05:59 []
01:05:59 Member of:
01:05:59 ID: 3 Name: training_group
01:05:59 ID: 4 Name: training_group-2
01:05:59 Current group: training_group
01:05:59 Group owners:
01:05:59 Group members:
01:05:59 ID: 2 UserName: training_user Name: training_user training_user
01:05:59 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:05:59 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:05:59 Owner of:
01:05:59 Admins:
01:05:59 ID: 0 UserName: root Name: root root
01:05:59 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:05:59 Created new Image:2609 Name:"numpy image"
01:05:59 newPlane for z,t: 0 0 uint8 0 127
01:05:59 newPlane for z,t: 0 1 uint8 0 127
01:05:59 newPlane for z,t: 0 2 uint8 0 127
01:05:59 newPlane for z,t: 0 3 uint8 0 127
01:05:59 newPlane for z,t: 0 4 uint8 0 127
01:05:59 newPlane for z,t: 0 5 uint8 0 127
01:05:59 newPlane for z,t: 0 6 uint8 0 127
01:05:59 newPlane for z,t: 0 7 uint8 0 127
01:05:59 newPlane for z,t: 0 8 uint8 0 127
01:05:59 newPlane for z,t: 0 9 uint8 0 127
01:05:59 newPlane for z,t: 1 0 uint8 0 127
01:05:59 newPlane for z,t: 1 1 uint8 0 127
01:05:59 newPlane for z,t: 1 2 uint8 0 127
01:05:59 newPlane for z,t: 1 3 uint8 0 127
01:05:59 newPlane for z,t: 1 4 uint8 0 127
01:05:59 newPlane for z,t: 1 5 uint8 0 127
01:05:59 newPlane for z,t: 1 6 uint8 0 127
01:05:59 newPlane for z,t: 1 7 uint8 0 127
01:05:59 newPlane for z,t: 1 8 uint8 0 127
01:05:59 newPlane for z,t: 1 9 uint8 0 127
01:05:59 newPlane for z,t: 2 0 uint8 0 127
01:05:59 newPlane for z,t: 2 1 uint8 0 127
01:05:59 newPlane for z,t: 2 2 uint8 0 127
01:05:59 newPlane for z,t: 2 3 uint8 0 127
01:05:59 newPlane for z,t: 2 4 uint8 0 127
01:05:59 newPlane for z,t: 2 5 uint8 0 127
01:05:59 newPlane for z,t: 2 6 uint8 0 127
01:05:59 newPlane for z,t: 2 7 uint8 0 127
01:05:59 newPlane for z,t: 2 8 uint8 0 127
01:05:59 newPlane for z,t: 2 9 uint8 0 127
01:05:59 newPlane for z,t: 3 0 uint8 0 127
01:05:59 newPlane for z,t: 3 1 uint8 0 127
01:05:59 newPlane for z,t: 3 2 uint8 0 127
01:05:59 newPlane for z,t: 3 3 uint8 0 127
01:05:59 newPlane for z,t: 3 4 uint8 0 127
01:05:59 newPlane for z,t: 3 5 uint8 0 127
01:05:59 newPlane for z,t: 3 6 uint8 0 127
01:05:59 newPlane for z,t: 3 7 uint8 0 127
01:05:59 newPlane for z,t: 3 8 uint8 0 127
01:05:59 newPlane for z,t: 3 9 uint8 0 127
01:05:59 newPlane for z,t: 4 0 uint8 0 127
01:05:59 newPlane for z,t: 4 1 uint8 0 127
01:05:59 newPlane for z,t: 4 2 uint8 0 127
01:05:59 newPlane for z,t: 4 3 uint8 0 127
01:05:59 newPlane for z,t: 4 4 uint8 0 127
01:05:59 newPlane for z,t: 4 5 uint8 0 127
01:05:59 newPlane for z,t: 4 6 uint8 0 127
01:05:59 newPlane for z,t: 4 7 uint8 0 127
01:05:59 newPlane for z,t: 4 8 uint8 0 127
01:05:59 newPlane for z,t: 4 9 uint8 0 127
01:05:59 Deleting, please wait.
01:05:59 Error? False
01:05:59 2603 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:05:59 training_user_2/Blitz-0-Ice.ThreadPool.Server-6/2024-03/24/01-04-55.237/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:05:59 1
01:05:59 training_user_2/Blitz-0-Ice.ThreadPool.Server-6/2024-03/24/01-04-55.237/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:05:59 Current group: training_group
01:05:59 Permissions: READ-ONLY (rwr---)
01:05:59 Project 1 Owner: training_user training_user
01:05:59 Project 1 Owner: training_user training_user
01:05:59 Project 1 Owner: training_user training_user
01:05:59 Project 1 Owner: training_user training_user
01:05:59 Project 1 Owner: training_user training_user
01:05:59 Project 1 Owner: training_user training_user
01:05:59 Project 0 Owner: training_user-2 training_user-2
01:05:59 Project 0 Owner: training_user-2 training_user-2
01:05:59 Project 0 Owner: training_user-2 training_user-2
01:05:59 Project 0 Owner: training_user-2 training_user-2
01:05:59 Project 0 Owner: training_user-2 training_user-2
01:05:59 Project 0 Owner: training_user-2 training_user-2
01:05:59 Image: <_ImageWrapper id=2603>
01:05:59 Image: <_ImageWrapper id=2603> Group: training_group 3
01:05:59 Image: <_ImageWrapper id=2603> Channel: 0
01:05:59 Channel: 1
01:05:59 Channel: 2
01:05:59
01:05:59
01:05:59 original_metadata
01:05:59 global_metadata
01:05:59 series_metadata
01:05:59
01:05:59 Plane at zct: 0 0 0
01:05:59 [[ 0 0 0 ... 253 254 255]
01:05:59 [ 0 0 0 ... 253 254 255]
01:05:59 [ 0 0 0 ... 253 254 255]
01:05:59 ...
01:05:59 [ 0 1 2 ... 253 254 255]
01:05:59 [ 0 1 2 ... 253 254 255]
01:05:59 [ 0 1 2 ... 253 254 255]]
01:05:59 shape: (512, 512)
01:05:59 min: 0 max: 255 pixel type: uint8
01:05:59
01:05:59 Z stack of tiles:
01:05:59 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:05:59 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:05:59 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:05:59 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:05:59 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:05:59
01:05:59 Hyper stack of planes:
01:05:59 plane zct: (2, 0, 0) min: 0 max: 255
01:05:59 plane zct: (2, 0, 1) min: 0 max: 255
01:05:59 plane zct: (2, 0, 2) min: 0 max: 255
01:05:59 plane zct: (2, 0, 3) min: 0 max: 255
01:05:59 plane zct: (2, 0, 4) min: 0 max: 255
01:05:59 plane zct: (2, 0, 5) min: 0 max: 255
01:05:59 plane zct: (2, 0, 6) min: 0 max: 255
01:05:59 plane zct: (2, 0, 7) min: 0 max: 255
01:05:59 plane zct: (2, 0, 8) min: 0 max: 255
01:05:59 plane zct: (2, 0, 9) min: 0 max: 255
01:05:59 plane zct: (2, 1, 0) min: 0 max: 255
01:05:59 plane zct: (2, 1, 1) min: 0 max: 255
01:05:59 plane zct: (2, 1, 2) min: 0 max: 255
01:05:59 plane zct: (2, 1, 3) min: 0 max: 255
01:05:59 plane zct: (2, 1, 4) min: 0 max: 255
01:05:59 plane zct: (2, 1, 5) min: 0 max: 255
01:05:59 plane zct: (2, 1, 6) min: 0 max: 255
01:05:59 plane zct: (2, 1, 7) min: 0 max: 255
01:05:59 plane zct: (2, 1, 8) min: 0 max: 255
01:05:59 plane zct: (2, 1, 9) min: 0 max: 255
01:05:59 plane zct: (2, 2, 0) min: 0 max: 255
01:05:59 plane zct: (2, 2, 1) min: 0 max: 255
01:05:59 plane zct: (2, 2, 2) min: 0 max: 255
01:05:59 plane zct: (2, 2, 3) min: 0 max: 255
01:05:59 plane zct: (2, 2, 4) min: 0 max: 255
01:05:59 plane zct: (2, 2, 5) min: 0 max: 255
01:05:59 plane zct: (2, 2, 6) min: 0 max: 255
01:05:59 plane zct: (2, 2, 7) min: 0 max: 255
01:05:59 plane zct: (2, 2, 8) min: 0 max: 255
01:05:59 plane zct: (2, 2, 9) min: 0 max: 255
01:05:59 plane zct: (3, 0, 0) min: 0 max: 255
01:05:59 plane zct: (3, 0, 1) min: 0 max: 255
01:05:59 plane zct: (3, 0, 2) min: 0 max: 255
01:05:59 plane zct: (3, 0, 3) min: 0 max: 255
01:05:59 plane zct: (3, 0, 4) min: 0 max: 255
01:05:59 plane zct: (3, 0, 5) min: 0 max: 255
01:05:59 plane zct: (3, 0, 6) min: 0 max: 255
01:05:59 plane zct: (3, 0, 7) min: 0 max: 255
01:05:59 plane zct: (3, 0, 8) min: 0 max: 255
01:05:59 plane zct: (3, 0, 9) min: 0 max: 255
01:05:59 plane zct: (3, 1, 0) min: 0 max: 255
01:05:59 plane zct: (3, 1, 1) min: 0 max: 255
01:05:59 plane zct: (3, 1, 2) min: 0 max: 255
01:05:59 plane zct: (3, 1, 3) min: 0 max: 255
01:05:59 plane zct: (3, 1, 4) min: 0 max: 255
01:05:59 plane zct: (3, 1, 5) min: 0 max: 255
01:05:59 plane zct: (3, 1, 6) min: 0 max: 255
01:05:59 plane zct: (3, 1, 7) min: 0 max: 255
01:05:59 plane zct: (3, 1, 8) min: 0 max: 255
01:05:59 plane zct: (3, 1, 9) min: 0 max: 255
01:05:59 plane zct: (3, 2, 0) min: 0 max: 255
01:05:59 plane zct: (3, 2, 1) min: 0 max: 255
01:05:59 plane zct: (3, 2, 2) min: 0 max: 255
01:05:59 plane zct: (3, 2, 3) min: 0 max: 255
01:05:59 plane zct: (3, 2, 4) min: 0 max: 255
01:05:59 plane zct: (3, 2, 5) min: 0 max: 255
01:05:59 plane zct: (3, 2, 6) min: 0 max: 255
01:05:59 plane zct: (3, 2, 7) min: 0 max: 255
01:05:59 plane zct: (3, 2, 8) min: 0 max: 255
01:05:59 plane zct: (3, 2, 9) min: 0 max: 255
01:05:59 plane zct: (4, 0, 0) min: 0 max: 255
01:05:59 plane zct: (4, 0, 1) min: 0 max: 255
01:05:59 plane zct: (4, 0, 2) min: 0 max: 255
01:05:59 plane zct: (4, 0, 3) min: 0 max: 255
01:05:59 plane zct: (4, 0, 4) min: 0 max: 255
01:05:59 plane zct: (4, 0, 5) min: 0 max: 255
01:05:59 plane zct: (4, 0, 6) min: 0 max: 255
01:05:59 plane zct: (4, 0, 7) min: 0 max: 255
01:05:59 plane zct: (4, 0, 8) min: 0 max: 255
01:05:59 plane zct: (4, 0, 9) min: 0 max: 255
01:05:59 plane zct: (4, 1, 0) min: 0 max: 255
01:05:59 plane zct: (4, 1, 1) min: 0 max: 255
01:05:59 plane zct: (4, 1, 2) min: 0 max: 255
01:05:59 plane zct: (4, 1, 3) min: 0 max: 255
01:05:59 plane zct: (4, 1, 4) min: 0 max: 255
01:05:59 plane zct: (4, 1, 5) min: 0 max: 255
01:05:59 plane zct: (4, 1, 6) min: 0 max: 255
01:05:59 plane zct: (4, 1, 7) min: 0 max: 255
01:05:59 plane zct: (4, 1, 8) min: 0 max: 255
01:05:59 plane zct: (4, 1, 9) min: 0 max: 255
01:05:59 plane zct: (4, 2, 0) min: 0 max: 255
01:05:59 plane zct: (4, 2, 1) min: 0 max: 255
01:05:59 plane zct: (4, 2, 2) min: 0 max: 255
01:05:59 plane zct: (4, 2, 3) min: 0 max: 255
01:05:59 plane zct: (4, 2, 4) min: 0 max: 255
01:05:59 plane zct: (4, 2, 5) min: 0 max: 255
01:05:59 plane zct: (4, 2, 6) min: 0 max: 255
01:05:59 plane zct: (4, 2, 7) min: 0 max: 255
01:05:59 plane zct: (4, 2, 8) min: 0 max: 255
01:05:59 plane zct: (4, 2, 9) min: 0 max: 255
01:06:01 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
01:06:01
01:06:01 List Projects:
01:06:01 ==================================================
01:06:01 Project:1 Name:"Project 1" (owner=training_user)
01:06:01 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:06:01 Image:1 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:06:01 Image:12 Name:"New Image" (owner=training_user)
01:06:01 Image:13 Name:"newImageFrom3" (owner=training_user)
01:06:01 Image:2 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:7 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:17 Name:"new Name 1" (owner=training_user)
01:06:01 Dataset:18 Name:"new Name 2" (owner=training_user)
01:06:01 Project:51 Name:"Project 1" (owner=training_user)
01:06:01 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
01:06:01 Image:51 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
01:06:01 Image:62 Name:"New Image" (owner=training_user)
01:06:01 Image:63 Name:"newImageFrom53" (owner=training_user)
01:06:01 Image:52 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:57 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:67 Name:"new Name 1" (owner=training_user)
01:06:01 Dataset:68 Name:"new Name 2" (owner=training_user)
01:06:01 Project:101 Name:"Project 1" (owner=training_user)
01:06:01 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
01:06:01 Image:101 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
01:06:01 Image:112 Name:"New Image" (owner=training_user)
01:06:01 Image:113 Name:"newImageFrom103" (owner=training_user)
01:06:01 Image:102 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:107 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:117 Name:"new Name 1" (owner=training_user)
01:06:01 Dataset:118 Name:"new Name 2" (owner=training_user)
01:06:01 Project:151 Name:"Project 1" (owner=training_user)
01:06:01 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
01:06:01 Image:151 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
01:06:01 Image:162 Name:"New Image" (owner=training_user)
01:06:01 Image:163 Name:"newImageFrom153" (owner=training_user)
01:06:01 Image:152 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:157 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:167 Name:"new Name 1" (owner=training_user)
01:06:01 Dataset:168 Name:"new Name 2" (owner=training_user)
01:06:01 Project:301 Name:"Project 1" (owner=training_user)
01:06:01 Dataset:351 Name:"Dataset 1-1" (owner=training_user)
01:06:01 Image:2551 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:352 Name:"Dataset 1-2" (owner=training_user)
01:06:01 Image:2562 Name:"New Image" (owner=training_user)
01:06:01 Image:2563 Name:"newImageFrom2553" (owner=training_user)
01:06:01 Image:2552 Name:"test.fake" (owner=training_user)
01:06:01 Dataset:357 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:367 Name:"new Name 1" (owner=training_user)
01:06:01 Dataset:368 Name:"new Name 2" (owner=training_user)
01:06:01
01:06:01 List orphaned Datasets:
01:06:01 ==================================================
01:06:01 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:06:01 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:06:01 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:06:01 Dataset:8 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:9 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:10 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:11 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:12 Name:"New Dataset2" (owner=training_user)
01:06:01 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
01:06:01 Dataset:14 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:15 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:16 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
01:06:01 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
01:06:01 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
01:06:01 Dataset:58 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:59 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:60 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:61 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:62 Name:"New Dataset2" (owner=training_user)
01:06:01 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
01:06:01 Dataset:64 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:65 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:66 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
01:06:01 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
01:06:01 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
01:06:01 Dataset:108 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:109 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:110 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:111 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:112 Name:"New Dataset2" (owner=training_user)
01:06:01 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
01:06:01 Dataset:114 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:115 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:116 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
01:06:01 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
01:06:01 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
01:06:01 Dataset:158 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:159 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:160 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:161 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:162 Name:"New Dataset2" (owner=training_user)
01:06:01 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
01:06:01 Dataset:164 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:165 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:166 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:353 Name:"Orphaned dataset 1" (owner=training_user)
01:06:01 Dataset:354 Name:"Orphaned dataset 2" (owner=training_user)
01:06:01 Dataset:355 Name:"Dataset 0" (owner=training_user-2)
01:06:01 Dataset:358 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:359 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:360 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:361 Name:"New Dataset" (owner=training_user)
01:06:01 Dataset:362 Name:"New Dataset2" (owner=training_user)
01:06:01 Dataset:363 Name:"FileAnnotationDelete" (owner=training_user)
01:06:01 Dataset:364 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:365 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:366 Name:"MyDataset" (owner=training_user)
01:06:01 Dataset:403 Name:"Orphaned dataset 1" (owner=training_user)
01:06:01 Dataset:404 Name:"Orphaned dataset 2" (owner=training_user)
01:06:01 Dataset:405 Name:"Dataset 0" (owner=training_user-2)
01:06:01
01:06:01 Images in Dataset: 402
01:06:01 ==================================================
01:06:01 Image:2602 Name:"test.fake" (owner=training_user)
01:06:01
01:06:01 Image:2603
01:06:01 ==================================================
01:06:01 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:01 X: 512
01:06:01 Y: 512
01:06:01 Z: 5
01:06:01 C: 3
01:06:01 T: 10
01:06:01 Channel: 0 Color: (255, 0, 0)
01:06:01 Lookup table: None
01:06:03 <string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
01:06:10 Is reverse intensity? False
01:06:10 Channel: 1 Color: (0, 255, 0)
01:06:10 Lookup table: None
01:06:10 Is reverse intensity? False
01:06:10 Channel: 2 Color: (0, 0, 255)
01:06:10 Lookup table: None
01:06:10 Is reverse intensity? False
01:06:10 Pixel Size X: None
01:06:10
01:06:10 List Screens:
01:06:10 ==================================================
01:06:10 Screen:251 Name:"Screen" (owner=training_user)
01:06:10 Plate:351 Name:"Plate" (owner=training_user)
01:06:10 Plate:352 Name:"Plate Name 0" (owner=training_user)
01:06:10 Screen:201 Name:"Screen" (owner=training_user)
01:06:10 Plate:301 Name:"Plate" (owner=training_user)
01:06:10 Plate:302 Name:"Plate Name 0" (owner=training_user)
01:06:10 Screen:151 Name:"Screen" (owner=training_user)
01:06:10 Plate:151 Name:"Plate" (owner=training_user)
01:06:10 Plate:152 Name:"Plate Name 0" (owner=training_user)
01:06:10 Screen:101 Name:"Screen" (owner=training_user)
01:06:10 Plate:101 Name:"Plate" (owner=training_user)
01:06:10 Plate:102 Name:"Plate Name 0" (owner=training_user)
01:06:10 Screen:51 Name:"Screen" (owner=training_user)
01:06:10 Plate:51 Name:"Plate" (owner=training_user)
01:06:10 Plate:52 Name:"Plate Name 0" (owner=training_user)
01:06:10 Screen:1 Name:"Screen" (owner=training_user)
01:06:10 Plate:1 Name:"Plate" (owner=training_user)
01:06:10 Plate:2 Name:"Plate Name 0" (owner=training_user)
01:06:10 Screen:252 Name:"Screen" (owner=training_user-2)
01:06:10 Screen:202 Name:"Screen" (owner=training_user-2)
01:06:10 Screen:152 Name:"Screen" (owner=training_user-2)
01:06:10 Screen:102 Name:"Screen" (owner=training_user-2)
01:06:10 Screen:52 Name:"Screen" (owner=training_user-2)
01:06:10 Screen:2 Name:"Screen" (owner=training_user-2)
01:06:10
01:06:10 Plate:352
01:06:10 ==================================================
01:06:10
01:06:10 Number of fields: (0, 0)
01:06:10
01:06:10 Grid size: {'rows': 1, 'columns': 3}
01:06:10
01:06:10 Wells in Plate: Plate Name 0
01:06:10 Well: 0 1 Fields: 1
01:06:10 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 2605
01:06:10 Well: 0 2 Fields: 1
01:06:10 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 2606
01:06:10 Well: 0 0 Fields: 1
01:06:10 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 2604
01:06:10 1451 <class 'omero.model.MapAnnotationI'>
01:06:10 added by training_user
01:06:10 Image ID: 2603
01:06:10 Annotation ID: 1451
01:06:10 2603
01:06:10 Channel rendering settings:
01:06:10 Name: 0
01:06:10 Color: FF0000
01:06:10 Active: True
01:06:10 Levels: 0.0 - 255.0
01:06:10 Name: 1
01:06:10 Color: 00FF00
01:06:10 Active: True
01:06:10 Levels: 0.0 - 255.0
01:06:10 Name: 2
01:06:10 Color: 0000FF
01:06:10 Active: True
01:06:10 Levels: 0.0 - 255.0
01:06:10 isGreyscaleRenderingModel: False
01:06:10 Default Z/T positions:
01:06:10 Z = 2, T = 0
01:06:10 Rendering Defs on Image:
01:06:10 ID: 2553 (owner: training_user training_user)
01:06:10 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:06:10 ROI: ID: 252
01:06:10 Shape: id 271 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:06:10 Shape: id 272 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:06:10 ROI: ID: 253
01:06:10 Shape: id 273 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:06:10 ROI: ID: 254
01:06:10 Shape: id 274 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:06:10 ROI: ID: 255
01:06:10 Shape: id 275 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:06:10 ROI: ID: 256
01:06:10 <class 'omero.model.PolygonI'> Not supported by this code
01:06:10 Shape: id 276 theT 0 theZ 2 textValue test-Polygon
01:06:10 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:06:10 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:06:10 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:06:10 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:06:10 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:06:10 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:06:10 Removing Shape from ROI...
01:06:10 Deleting ROI: 257
01:06:10 Table Columns:
01:06:10 Uid
01:06:10 MyStringColumnInit
01:06:10 Row count: 10
01:06:10
01:06:10 Get All Data for rows: [3, 5, 7]
01:06:10 Data for Column: Uid
01:06:10 1
01:06:10 2
01:06:10 3
01:06:10 4
01:06:10 5
01:06:10 6
01:06:10 7
01:06:10 8
01:06:10 9
01:06:10 10
01:06:10 Data for Column: MyStringColumnInit
01:06:10 one
01:06:10 two
01:06:10 three
01:06:10 four
01:06:10 five
01:06:10 six
01:06:10 seven
01:06:10 eight
01:06:10 nine
01:06:10 ten
01:06:10
01:06:10 Get All Data for rows with slice: [3, 5, 7]
01:06:10 Data for Column: Uid
01:06:10 4
01:06:10 6
01:06:10 8
01:06:10 Data for Column: MyStringColumnInit
01:06:10 four
01:06:10 six
01:06:10 eight
01:06:10
01:06:10 Get Data for cols: [1] and between rows: 3 - 7
01:06:10 Data for Column: MyStringColumnInit
01:06:10 four
01:06:10 five
01:06:10 six
01:06:10 seven
01:06:10
01:06:10 Get Data for cols: [1] and between rows: 3 - 7 with slice
01:06:10 Data for Column: MyStringColumnInit
01:06:10 four
01:06:10 five
01:06:10 six
01:06:10 seven
01:06:10 Query Results for Column: Uid
01:06:10 3
01:06:10 4
01:06:10 5
01:06:10 6
01:06:10 7
01:06:10 8
01:06:10 Query Results for Column: MyStringColumnInit
01:06:10 three
01:06:10 four
01:06:10 five
01:06:10 six
01:06:10 seven
01:06:10 eight
01:06:10 Opened table with row-count: 10
01:06:10 New dataset, Id: 407
01:06:10 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
01:06:10 1455 <class 'omero.model.TagAnnotationI'> added by training_user
01:06:10 Tag value: New Tag
01:06:10 1456 <class 'omero.model.MapAnnotationI'> added by training_user
01:06:10
01:06:10 Creating an OriginalFile and FileAnnotation
01:06:10 Attaching FileAnnotation to Dataset: File ID: 1457 , README.txt Size: 15
01:06:10
01:06:10 Annotations on Dataset: New Dataset
01:06:10 File ID: 8448 README.txt Size: 15
01:06:10
01:06:10 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
01:06:10 File downloaded!
01:06:10 7 README.txt
01:06:10 107 README.txt
01:06:10 157 README.txt
01:06:10 57 README.txt
01:06:10 1407 README.txt
01:06:10 1457 README.txt
01:06:10 Found Annotation with namespace: imperial.training.demo
01:06:10 Plane: 0 0 0
01:06:10 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
01:06:10 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
01:06:10
01:06:10 List Datasets:
01:06:10 ID: 8 Name: MyDataset
01:06:10 ID: 9 Name: MyDataset
01:06:10 ID: 10 Name: MyDataset
01:06:10 ID: 14 Name: MyDataset
01:06:10 ID: 15 Name: MyDataset
01:06:10 ID: 16 Name: MyDataset
01:06:10 ID: 58 Name: MyDataset
01:06:10 ID: 59 Name: MyDataset
01:06:10 ID: 60 Name: MyDataset
01:06:10 ID: 64 Name: MyDataset
01:06:10 ID: 65 Name: MyDataset
01:06:10 ID: 66 Name: MyDataset
01:06:10 ID: 108 Name: MyDataset
01:06:10 ID: 109 Name: MyDataset
01:06:10 ID: 110 Name: MyDataset
01:06:10 ID: 114 Name: MyDataset
01:06:10 ID: 115 Name: MyDataset
01:06:10 ID: 116 Name: MyDataset
01:06:10 ID: 158 Name: MyDataset
01:06:10 ID: 159 Name: MyDataset
01:06:10 ID: 160 Name: MyDataset
01:06:10 ID: 164 Name: MyDataset
01:06:10 ID: 165 Name: MyDataset
01:06:10 ID: 166 Name: MyDataset
01:06:10 ID: 358 Name: MyDataset
01:06:10 ID: 359 Name: MyDataset
01:06:10 ID: 360 Name: MyDataset
01:06:10 ID: 364 Name: MyDataset
01:06:10 ID: 365 Name: MyDataset
01:06:10 ID: 366 Name: MyDataset
01:06:10 ID: 408 Name: MyDataset
01:06:10 ID: 409 Name: MyDataset
01:06:10 ID: 410 Name: MyDataset
01:06:10
01:06:10 List Tags:
01:06:10 ID: 8 Text: MyTag Desc: MyTag 0
01:06:10 ID: 9 Text: MyTag Desc: MyTag 1
01:06:10 ID: 10 Text: MyTag Desc: MyTag 2
01:06:10 ID: 16 Text: MyTag Desc: MyTag 0
01:06:10 ID: 17 Text: MyTag Desc: MyTag 1
01:06:10 ID: 18 Text: MyTag Desc: MyTag 2
01:06:10 ID: 58 Text: MyTag Desc: MyTag 0
01:06:10 ID: 59 Text: MyTag Desc: MyTag 1
01:06:10 ID: 60 Text: MyTag Desc: MyTag 2
01:06:10 ID: 66 Text: MyTag Desc: MyTag 0
01:06:10 ID: 67 Text: MyTag Desc: MyTag 1
01:06:10 ID: 68 Text: MyTag Desc: MyTag 2
01:06:10 ID: 108 Text: MyTag Desc: MyTag 0
01:06:10 ID: 109 Text: MyTag Desc: MyTag 1
01:06:10 ID: 110 Text: MyTag Desc: MyTag 2
01:06:10 ID: 116 Text: MyTag Desc: MyTag 0
01:06:10 ID: 117 Text: MyTag Desc: MyTag 1
01:06:10 ID: 118 Text: MyTag Desc: MyTag 2
01:06:10 ID: 158 Text: MyTag Desc: MyTag 0
01:06:10 ID: 159 Text: MyTag Desc: MyTag 1
01:06:10 ID: 160 Text: MyTag Desc: MyTag 2
01:06:10 ID: 166 Text: MyTag Desc: MyTag 0
01:06:10 ID: 167 Text: MyTag Desc: MyTag 1
01:06:10 ID: 168 Text: MyTag Desc: MyTag 2
01:06:10 ID: 1408 Text: MyTag Desc: MyTag 0
01:06:10 ID: 1409 Text: MyTag Desc: MyTag 1
01:06:10 ID: 1410 Text: MyTag Desc: MyTag 2
01:06:10 ID: 1416 Text: MyTag Desc: MyTag 0
01:06:10 ID: 1417 Text: MyTag Desc: MyTag 1
01:06:10 ID: 1418 Text: MyTag Desc: MyTag 2
01:06:10 ID: 1458 Text: MyTag Desc: MyTag 0
01:06:10 ID: 1459 Text: MyTag Desc: MyTag 1
01:06:10 ID: 1460 Text: MyTag Desc: MyTag 2
01:06:10 New dataset, Id: 411
01:06:10 New dataset 2, Id: 412
01:06:10 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:10 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:06:10 [[ 0 0 0 ... 102 103 104]
01:06:10 [ 0 0 0 ... 102 103 104]
01:06:10 [ 0 0 0 ... 102 103 104]
01:06:10 ...
01:06:10 [ 5 6 7 ... 102 103 104]
01:06:10 [ 5 6 7 ... 102 103 104]
01:06:10 [ 5 6 7 ... 102 103 104]]
01:06:10 shape: (100, 100)
01:06:10 min: 0 max: 104 pixel type: uint8
01:06:10 Average : 53.9125
01:06:10 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:06:10 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:06:10 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:06:10 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:06:18 kymograph_data (512, 100)
01:06:18 Attaching kymograph.png to image
01:06:18 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:06:18 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:06:18 [[ 0 0 0 ... 102 103 104]
01:06:18 [ 0 0 0 ... 102 103 104]
01:06:18 [ 0 0 0 ... 102 103 104]
01:06:18 ...
01:06:18 [ 5 6 7 ... 102 103 104]
01:06:18 [ 5 6 7 ... 102 103 104]
01:06:18 [ 5 6 7 ... 102 103 104]]
01:06:18 shape: (100, 100)
01:06:18 min: 0 max: 104 pixel type: uint8
01:06:18 Average : 53.9125
01:06:18 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:06:18 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:06:18 kymograph_data (512, 100)
01:06:18 Attaching kymograph.png to image
01:06:18 No file downloaded. Project not rated.
01:06:18 New image, Id: 2612
01:06:18 Starting at: http://nginx/web/api/
01:06:18 CSRF token zenVjzdkmt74BDmkLn35N1oOyaZQA3RawqmtQZC6g1y9xVXuwpFec20IYCWnscgJ
01:06:18 Servers:
01:06:18 -id: 1
01:06:18 name: omero
01:06:18 host: omero
01:06:18 port: 4064
01:06:18 -id: 2
01:06:18 name: testintegration
01:06:18 host: testintegration
01:06:18 port: 14064
01:06:18 eventContext {'sessionId': 1643, 'sessionUuid': '9f24a63d-4688-48ab-ad25-2f465f2ac961', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
01:06:18 Projects:
01:06:18 2 Project 0
01:06:18 3 Project 0
01:06:18 Created Project: 356 API TEST foo
01:06:18 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 356, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/356/datasets/'}}
01:06:18 !! 03/24/24 01:06:18.836 error: communicator not destroyed during global destruction.+ deactivate
01:06:18 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:06:18 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:18 + export PATH
01:06:18 + unset _OLD_VIRTUAL_PATH
01:06:18 + '[' -n '' ']'
01:06:18 + '[' -n /bin/bash -o -n '' ']'
01:06:18 + hash -r
01:06:18 + '[' -n '' ']'
01:06:18 + unset VIRTUAL_ENV
01:06:18 + '[' '!' '' = nondestructive ']'
01:06:18 + unset -f deactivate
01:06:18 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
01:06:18 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
01:06:21 Note: Some input files use unchecked or unsafe operations.
01:06:21 Note: Recompile with -Xlint:unchecked for details.
01:06:21 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
01:06:27 omero.cmd.Delete2Response@6f0ca692
01:06:28 omero.cmd.Delete2Response@675d8c96
01:06:29 one [class java.lang.String] 1.0 [class java.lang.Double]
01:06:29 two [class java.lang.String] 2.0 [class java.lang.Double]
01:06:29 three [class java.lang.String] 3.0 [class java.lang.Double]
01:06:29 -1.0
01:06:29 0
01:06:29 1
01:06:29 2
01:06:35 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
01:06:35 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:35 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:35 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:35 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:06:35 6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:06:35 7 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:06:35 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
01:06:35 Project:2 Project 0
01:06:35 Project:52 Project 0
01:06:35 Project:352 Project 0
01:06:35 Project:1 Project 1
01:06:35 dataset:7 New Dataset
01:06:35 dataset:1 Dataset 1-1
01:06:35 dataset:17 new Name 1
01:06:35 dataset:2 Dataset 1-2
01:06:35 dataset:18 new Name 2
01:06:35 Project:51 Project 1
01:06:35 dataset:51 Dataset 1-1
01:06:35 dataset:52 Dataset 1-2
01:06:35 dataset:68 new Name 2
01:06:35 dataset:67 new Name 1
01:06:35 dataset:57 New Dataset
01:06:35 Project:151 Project 1
01:06:35 dataset:152 Dataset 1-2
01:06:35 dataset:157 New Dataset
01:06:35 dataset:151 Dataset 1-1
01:06:35 dataset:167 new Name 1
01:06:35 dataset:168 new Name 2
01:06:35 Project:301 Project 1
01:06:35 dataset:367 new Name 1
01:06:35 dataset:352 Dataset 1-2
01:06:35 dataset:357 New Dataset
01:06:35 dataset:368 new Name 2
01:06:35 dataset:351 Dataset 1-1
01:06:35 Project:102 Project 0
01:06:35 Project:302 Project 0
01:06:35 Project:101 Project 1
01:06:35 dataset:117 new Name 1
01:06:35 dataset:101 Dataset 1-1
01:06:35 dataset:118 new Name 2
01:06:35 dataset:107 New Dataset
01:06:35 dataset:102 Dataset 1-2
01:06:35 Project:351 Project 1
01:06:35 dataset:402 Dataset 1-2
01:06:35 dataset:401 Dataset 1-1
01:06:35 dataset:407 New Dataset
01:06:35 Project:152 Project 0
01:06:35 image:2602 test.fake
01:06:35 image:2613 newImageFrom2603
01:06:35 image:2612 New Image
01:06:35 5
01:06:35 10
01:06:35 3
01:06:35 512
01:06:35 512
01:06:36 screen:102 Screen
01:06:36 screen:202 Screen
01:06:36 screen:201 Screen
01:06:36 plate:302 Plate Name 0
01:06:36 plate:301 Plate
01:06:36 screen:252 Screen
01:06:36 screen:152 Screen
01:06:36 screen:51 Screen
01:06:36 plate:52 Plate Name 0
01:06:36 plate:51 Plate
01:06:36 screen:101 Screen
01:06:36 plate:102 Plate Name 0
01:06:36 plate:101 Plate
01:06:36 screen:251 Screen
01:06:36 plate:352 Plate Name 0
01:06:36 plate:351 Plate
01:06:36 screen:1 Screen
01:06:36 plate:1 Plate
01:06:36 plate:2 Plate Name 0
01:06:36 screen:151 Screen
01:06:36 plate:151 Plate
01:06:36 plate:152 Plate Name 0
01:06:36 screen:52 Screen
01:06:36 screen:2 Screen
01:06:36 well:451
01:06:36 well:452
01:06:36 well:453
01:06:36 plate:51
01:06:36 plate:353
01:06:36 plate:53
01:06:36 plate:101
01:06:36 plate:302
01:06:36 plate:351
01:06:36 plate:153
01:06:36 plate:3
01:06:36 plate:152
01:06:36 plate:52
01:06:36 plate:151
01:06:36 plate:301
01:06:36 plate:352
01:06:36 plate:1
01:06:36 plate:303
01:06:36 plate:103
01:06:36 plate:2
01:06:36 plate:102
01:06:36
01:06:36 List Datasets:
01:06:36 ID: 8 Name: MyDataset
01:06:36 ID: 9 Name: MyDataset
01:06:36 ID: 10 Name: MyDataset
01:06:36 ID: 14 Name: MyDataset
01:06:36 ID: 15 Name: MyDataset
01:06:36 ID: 16 Name: MyDataset
01:06:36 ID: 58 Name: MyDataset
01:06:36 ID: 59 Name: MyDataset
01:06:36 ID: 60 Name: MyDataset
01:06:36 ID: 64 Name: MyDataset
01:06:36
01:06:36 List Tags:
01:06:36 ID: 16 NS: omero.training.demo
01:06:36 ID: 17 NS: omero.training.demo
01:06:36 ID: 18 NS: omero.training.demo
01:06:36 ID: 66 NS: omero.training.demo
01:06:36 ID: 67 NS: omero.training.demo
01:06:36 ID: 68 NS: omero.training.demo
01:06:36 ID: 116 NS: omero.training.demo
01:06:36 ID: 117 NS: omero.training.demo
01:06:36 ID: 118 NS: omero.training.demo
01:06:36 ID: 166 NS: omero.training.demo
01:06:36 Dataset:115 MyDataset
01:06:36 Dataset:114 MyDataset
01:06:36 Dataset:366 MyDataset
01:06:36 Dataset:8 MyDataset
01:06:36 Dataset:61 New Dataset
01:06:36 Dataset:161 New Dataset
01:06:36 Dataset:108 MyDataset
01:06:36 Dataset:154 Orphaned dataset 2
01:06:36 Dataset:4 Orphaned dataset 2
01:06:36 Project:101 Project 1
01:06:36 Dataset:104 Orphaned dataset 2
01:06:36 Dataset:113 FileAnnotationDelete
01:06:36 Dataset:166 MyDataset
01:06:36 Dataset:416 MyDataset
01:06:36 Dataset:364 MyDataset
01:06:36 Dataset:16 MyDataset
01:06:36 Dataset:15 MyDataset
01:06:36 Dataset:66 MyDataset
01:06:36 Dataset:65 MyDataset
01:06:36 Dataset:413 FileAnnotationDelete
01:06:36 Dataset:411 New Dataset
01:06:36 Dataset:162 New Dataset2
01:06:36 Dataset:12 New Dataset2
01:06:36 Project:151 Project 1
01:06:36 Dataset:9 MyDataset
01:06:36 Dataset:109 MyDataset
01:06:36 Dataset:14 MyDataset
01:06:36 Dataset:415 MyDataset
01:06:36 Dataset:353 Orphaned dataset 1
01:06:36 Project:301 Project 1
01:06:36 Project:1 Project 1
01:06:36 Dataset:64 MyDataset
01:06:36 Dataset:365 MyDataset
01:06:36 Dataset:354 Orphaned dataset 2
01:06:36 Dataset:112 New Dataset2
01:06:36 Dataset:362 New Dataset2
01:06:36 Dataset:363 FileAnnotationDelete
01:06:36 Dataset:403 Orphaned dataset 1
01:06:36 Dataset:116 MyDataset
01:06:36 Dataset:60 MyDataset
01:06:36 Dataset:358 MyDataset
01:06:36 Dataset:10 MyDataset
01:06:36 Dataset:163 FileAnnotationDelete
01:06:36 Dataset:164 MyDataset
01:06:36 Dataset:63 FileAnnotationDelete
01:06:36 Dataset:359 MyDataset
01:06:36 Dataset:408 MyDataset
01:06:36 Dataset:159 MyDataset
01:06:36 Dataset:153 Orphaned dataset 1
01:06:36 Dataset:165 MyDataset
01:06:36 Dataset:53 Orphaned dataset 1
01:06:36 Project:51 Project 1
01:06:36 Dataset:3 Orphaned dataset 1
01:06:36 Dataset:409 MyDataset
01:06:36 Dataset:59 MyDataset
01:06:36 Dataset:360 MyDataset
01:06:36 Dataset:361 New Dataset
01:06:36 Dataset:11 New Dataset
01:06:36 Dataset:111 New Dataset
01:06:36 Dataset:13 FileAnnotationDelete
01:06:36 Dataset:158 MyDataset
01:06:36 Dataset:58 MyDataset
01:06:36 Project:351 Project 1
01:06:36 Dataset:404 Orphaned dataset 2
01:06:36 Dataset:410 MyDataset
01:06:36 Dataset:62 New Dataset2
01:06:36 Dataset:103 Orphaned dataset 1
01:06:36 Dataset:110 MyDataset
01:06:36 Dataset:54 Orphaned dataset 2
01:06:36 Dataset:160 MyDataset
01:06:36 Dataset:414 MyDataset
01:06:36 Dataset:412 New Dataset2
01:06:36 Size:0
01:06:37 512 512
01:06:38 9
01:06:38 9
01:06:38 1
01:06:41 Logged in as ladmin_user
01:06:41 Added 'training_user's tag' to dataset New Dataset on behalf of training_user
01:06:41 Added 'ladmin_user's tag' to dataset New Dataset as admin.
01:06:41 Finished: SUCCESS
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