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inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/edges.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/gem.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/phase.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/royal.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/sepia.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/smart.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/thal.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/thallium.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/ncsa_paledit/unionjack.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/physics.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/red-green.lut
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/seaborn/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/seaborn/mako.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/seaborn/rocket.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/spectrum.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/thermal.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/turbo.lut
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/cyan_hot.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/green_fire_blue.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/hilo.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/ica.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/ica2.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/ica3.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/magenta_hot.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/orange_hot.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/rainbow_rgb.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/red_hot.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/luts/wcif/yellow_hot.lut
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/omero.class
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/setup.cfg
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/README.txt
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/misc/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/misc/Makefile
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/misc/current.sql
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/misc/enums.py
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__1/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__1/OMERO3__7.sql
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__10/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__10/OMERO3A__9.sql
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__11/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__11/OMERO3A__10.sql
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__11/OMERO3A__5.sql
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__2/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__2/OMERO3A__1.sql
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__3/
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__3/OMERO3A__2.sql
02:21:14 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__3/OMERO3__5.sql
02:21:14 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__4/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__4/OMERO3A__3.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__4/OMERO3__5.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__5/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__5/OMERO3A__4.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__6/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__6/OMERO3A__5.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__7/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__7/OMERO3A__6.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__8/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__8/OMERO3A__6.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__9/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3A__9/OMERO3A__8.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__4/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__4/OMERO3__1.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__5/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__5/OMERO3__4.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__6/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__6/OMERO3__5.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__7/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO3__7/OMERO3__6.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.1__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.1__0/OMERO4__0.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/t/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.3__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.4__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__1/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__2/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__3/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
02:21:15 creating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/schema.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/views.sql
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/test.xml
02:21:15 inflating: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/update_dependencies.sh
02:21:15 extracting: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/components/antlib/resources/gitversion.xml
02:21:15 extracting: openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8/components/tools/OmeroCpp/cmake/GitVersion.cmake
02:21:16 + rm -f openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8.zip
02:21:16 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-614-b0d2e0b22b-ice36-b8 /home/omero/workspace/OMERO-training/openmicroscopy
02:21:16 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
02:21:16 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
02:21:16 ++ ls OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
02:21:16 + ZIP=OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
02:21:16 + DIST=OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8
02:21:16 + unzip -n OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
02:21:16 Archive: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/blitz/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/grid/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/profiles/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/error/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/etc/templates/grid/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/client/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/janelia/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/matplotlib/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/ncsa_paledit/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/seaborn/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/luts/wcif/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/
02:21:16 creating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/scripts/omero/analysis_scripts/
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02:21:28 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/lib/server/quartz.jar
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02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/crystalclear.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/django.txt
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02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/npl-1_1.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/path.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/pil.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/postgresql.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/psf-v2.0.txt
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02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/scons.txt
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02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/tablelayout.txt
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02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/zlib-libpng.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/share/licenses/zpl-v2.1.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/README.txt
02:21:29 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/misc/Makefile
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02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
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02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
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02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/schema.sql
02:21:30 inflating: OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8/sql/psql/OMERO5.4__0/views.sql
02:21:30 + rm -f OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8.zip
02:21:30 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-614-b0d2e0b22b-ice36-b8 /home/omero/workspace/OMERO-training/OMERO.server
02:21:30 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
02:21:30 ++ deactivate nondestructive
02:21:30 ++ '[' -n '' ']'
02:21:30 ++ '[' -n '' ']'
02:21:30 ++ hash -r
02:21:30 ++ '[' -n '' ']'
02:21:30 ++ unset VIRTUAL_ENV
02:21:30 ++ unset VIRTUAL_ENV_PROMPT
02:21:30 ++ '[' '!' nondestructive = nondestructive ']'
02:21:30 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
02:21:30 ++ export VIRTUAL_ENV
02:21:30 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:21:30 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:21:30 ++ export PATH
02:21:30 ++ '[' -n '' ']'
02:21:30 ++ '[' -z '' ']'
02:21:30 ++ _OLD_VIRTUAL_PS1=
02:21:30 ++ PS1='(.venv3) '
02:21:30 ++ export PS1
02:21:30 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
02:21:30 ++ export VIRTUAL_ENV_PROMPT
02:21:30 ++ hash -r
02:21:30 + for x in *.gz
02:21:30 + pip install omero_dropbox-5.7.1.dev0.tar.gz
02:21:31 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
02:21:31 Installing build dependencies: started
02:21:33 Installing build dependencies: finished with status 'done'
02:21:33 Getting requirements to build wheel: started
02:21:33 Getting requirements to build wheel: finished with status 'done'
02:21:33 Preparing metadata (pyproject.toml): started
02:21:33 Preparing metadata (pyproject.toml): finished with status 'done'
02:21:33 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
02:21:33 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
02:21:33 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
02:21:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
02:21:33 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
02:21:33 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
02:21:33 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
02:21:34 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
02:21:34 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
02:21:34 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
02:21:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
02:21:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
02:21:34 Collecting requests (from omero-py->omero-dropbox==5.7.1.dev0)
02:21:34 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
02:21:34 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
02:21:34 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
02:21:34 Collecting charset_normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
02:21:34 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
02:21:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
02:21:34 Collecting urllib3<3,>=1.26 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
02:21:34 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
02:21:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
02:21:34 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
02:21:34 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
02:21:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
02:21:34 Using cached future-1.0.0-py3-none-any.whl (491 kB)
02:21:34 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
02:21:34 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
02:21:34 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
02:21:34 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
02:21:34 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
02:21:34 Building wheels for collected packages: omero-dropbox
02:21:34 Building wheel for omero-dropbox (pyproject.toml): started
02:21:35 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
02:21:35 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=096c54aeb00c38136bf086fd12fcd6bc578fae1c41abda4e4a422937af6420ac
02:21:35 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
02:21:35 Successfully built omero-dropbox
02:21:35 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, future, charset_normalizer, requests, omero-py, omero-dropbox
02:22:03
02:22:03 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 charset_normalizer-3.4.9 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0
02:22:03 + for x in *.gz
02:22:03 + pip install omero_marshal-0.9.2.dev0.tar.gz
02:22:04 Processing ./omero_marshal-0.9.2.dev0.tar.gz
02:22:04 Installing build dependencies: started
02:22:05 Installing build dependencies: finished with status 'done'
02:22:05 Getting requirements to build wheel: started
02:22:06 Getting requirements to build wheel: finished with status 'done'
02:22:06 Preparing metadata (pyproject.toml): started
02:22:06 Preparing metadata (pyproject.toml): finished with status 'done'
02:22:06 Building wheels for collected packages: omero_marshal
02:22:06 Building wheel for omero_marshal (pyproject.toml): started
02:22:06 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
02:22:06 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=b5544568c7dee47d67c273ebf39bd4e6c4fb3dc9785946d2e388d71b45d24928
02:22:06 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
02:22:06 Successfully built omero_marshal
02:22:07 Installing collected packages: omero_marshal
02:22:09 Successfully installed omero_marshal-0.9.2.dev0
02:22:09 + for x in *.gz
02:22:09 + pip install omero_py-5.22.2.dev0.tar.gz
02:22:10 Processing ./omero_py-5.22.2.dev0.tar.gz
02:22:10 Installing build dependencies: started
02:22:11 Installing build dependencies: finished with status 'done'
02:22:11 Getting requirements to build wheel: started
02:22:12 Getting requirements to build wheel: finished with status 'done'
02:22:12 Preparing metadata (pyproject.toml): started
02:22:12 Preparing metadata (pyproject.toml): finished with status 'done'
02:22:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
02:22:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
02:22:12 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
02:22:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
02:22:12 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
02:22:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
02:22:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
02:22:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
02:22:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
02:22:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
02:22:12 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
02:22:12 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
02:22:12 Building wheels for collected packages: omero-py
02:22:12 Building wheel for omero-py (pyproject.toml): started
02:22:13 Building wheel for omero-py (pyproject.toml): finished with status 'done'
02:22:13 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=33eec46c8e3a6b629216a51436c03bd6307def5632c8f57b71ca5e290c8c14aa
02:22:13 Stored in directory: /home/omero/.cache/pip/wheels/67/6d/a0/54908d8e3aee8366415fea8426f418a6717addeb1669d2e673
02:22:13 Successfully built omero-py
02:22:13 Installing collected packages: omero-py
02:22:13 Attempting uninstall: omero-py
02:22:13 Found existing installation: omero-py 5.22.1
02:22:14 Uninstalling omero-py-5.22.1:
02:22:21 Successfully uninstalled omero-py-5.22.1
02:22:39 Successfully installed omero-py-5.22.2.dev0
02:22:39 + for x in *.gz
02:22:39 + pip install omero_scripts-5.10.1.dev0.tar.gz
02:22:40 Processing ./omero_scripts-5.10.1.dev0.tar.gz
02:22:40 Installing build dependencies: started
02:22:42 Installing build dependencies: finished with status 'done'
02:22:42 Getting requirements to build wheel: started
02:22:42 Getting requirements to build wheel: finished with status 'done'
02:22:42 Preparing metadata (pyproject.toml): started
02:22:42 Preparing metadata (pyproject.toml): finished with status 'done'
02:22:42 Building wheels for collected packages: omero-scripts
02:22:42 Building wheel for omero-scripts (pyproject.toml): started
02:22:43 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
02:22:43 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=b344f46a8922d924aaa8cdc263897cccf47242c76aed291559a7bf2399408d0a
02:22:43 Stored in directory: /home/omero/.cache/pip/wheels/88/2f/31/9478f1cef9d86ee7a706f3c8d94d67d22081ff846c64d43aa0
02:22:43 Successfully built omero-scripts
02:22:43 Installing collected packages: omero-scripts
02:22:44 Successfully installed omero-scripts-5.10.1.dev0
02:22:44 + for x in *.gz
02:22:44 + pip install omero_web-5.32.1.dev0.tar.gz
02:22:45 Processing ./omero_web-5.32.1.dev0.tar.gz
02:22:45 Installing build dependencies: started
02:22:46 Installing build dependencies: finished with status 'done'
02:22:46 Getting requirements to build wheel: started
02:22:47 Getting requirements to build wheel: finished with status 'done'
02:22:47 Preparing metadata (pyproject.toml): started
02:22:47 Preparing metadata (pyproject.toml): finished with status 'done'
02:22:47 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
02:22:47 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
02:22:47 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
02:22:47 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
02:22:47 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
02:22:48 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
02:22:48 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
02:22:48 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
02:22:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
02:22:48 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
02:22:48 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
02:22:48 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
02:22:48 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
02:22:48 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
02:22:48 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
02:22:48 Collecting pytz (from omero-web==5.32.1.dev0)
02:22:48 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
02:22:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
02:22:48 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
02:22:48 Collecting importlib-resources (from omero-web==5.32.1.dev0)
02:22:48 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
02:22:48 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
02:22:48 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
02:22:48 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
02:22:48 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
02:22:48 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (83.0.0)
02:22:48 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
02:22:48 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
02:22:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
02:22:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
02:22:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
02:22:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
02:22:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
02:22:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
02:22:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
02:22:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
02:22:48 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
02:22:48 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
02:22:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
02:22:48 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
02:22:48 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
02:22:48 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
02:22:48 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
02:22:48 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
02:22:48 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
02:22:48 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
02:22:48 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
02:22:48 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
02:22:48 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
02:22:48 Building wheels for collected packages: omero-web
02:22:48 Building wheel for omero-web (pyproject.toml): started
02:22:49 Building wheel for omero-web (pyproject.toml): finished with status 'done'
02:22:49 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=0fc872028134eaea2d8d6e027c5b0bab0b9d1db19ea012309800b1c8121274fc
02:22:49 Stored in directory: /home/omero/.cache/pip/wheels/91/ad/79/ec318377d2e814ec25bf29bc612d81f9a885cbc4aa52a338d5
02:22:49 Successfully built omero-web
02:22:50 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
02:24:02
02:24:02 Successfully installed Django-5.2.16 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
02:24:02 + cd /home/omero/workspace/OMERO-training/OMERO.server
02:24:02 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
02:24:02 + HOSTNAME=5a50d333d1f0
02:24:02 + PORT=4064
02:24:02 + WEBHOST=http://nginx/web
02:24:02 + SERVER_NAME=omero
02:24:02 + ROOT_PASSWORD=omero
02:24:02 + GROUP_NAME=training_group
02:24:02 + GROUP_NAME_2=training_group-2
02:24:02 + USER_NAME=training_user
02:24:02 + USER_NAME_2=training_user-2
02:24:02 + LIGHTADMIN_USER_NAME=ladmin_user
02:24:02 + USER_PASSWORD=ome
02:24:02 + CONFIG_FILENAME=training_ice.config
02:24:02 + omero login root@5a50d333d1f0:4064 -w omero
02:24:05 Created session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:05 + omero group add training_group --type read-only --ignore-existing
02:24:07 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:07 Group exists: training_group (id=3)
02:24:07 + omero group add training_group-2 --type read-only --ignore-existing
02:24:09 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:09 Group exists: training_group-2 (id=4)
02:24:09 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
02:24:10 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:10 User exists: training_user (id=2)
02:24:11 + omero user joingroup --name training_user --group-name training_group training_group-2
02:24:13 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:13 2 is already in group 3
02:24:13 2 is already in group 4
02:24:13 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
02:24:15 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:15 User exists: training_user-2 (id=3)
02:24:15 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
02:24:17 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:17 3 is already in group 3
02:24:17 3 is already in group 4
02:24:17 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
02:24:18 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:18 User exists: ladmin_user (id=4)
02:24:19 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
02:24:20 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:20 4 is already in group 3
02:24:20 4 is already in group 4
02:24:20 ++ omero user info ladmin_user --style plain
02:24:20 ++ cut -d, -f1
02:24:22 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:22 + id=4
02:24:22 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
02:24:24 Using session for root@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: system
02:24:24 Experimenter:4
02:24:24 + omero logout
02:24:26 + touch test.fake
02:24:26 + omero login training_user@5a50d333d1f0:4064 -w ome -g training_group
02:24:28 Created session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:28 + nProjects=1
02:24:28 + nDatasets=2
02:24:28 + echo 'Creating projects and datasets'
02:24:28 Creating projects and datasets
02:24:28 + (( i=1 ))
02:24:28 + (( i<=1 ))
02:24:28 ++ omero obj new Project 'name=Project 1'
02:24:30 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:30 + project=Project:151
02:24:30 + (( j=1 ))
02:24:30 + (( j<=2 ))
02:24:30 ++ omero obj new Dataset 'name=Dataset 1-1'
02:24:32 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:32 + dataset=Dataset:151
02:24:32 + omero obj new ProjectDatasetLink parent=Project:151 child=Dataset:151
02:24:34 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:34 ProjectDatasetLink:151
02:24:34 + echo 'Importing image into dataset'
02:24:34 Importing image into dataset
02:24:34 + omero import -d Dataset:151 test.fake --debug ERROR
02:24:36 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:37 2026-07-13 02:24:37,609 282 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:24:37 2026-07-13 02:24:37,631 304 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:24:42 Image:151
02:24:42 Other imported objects:
02:24:42 Fileset:151
02:24:42
02:24:42 ==> Summary
02:24:42 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.458
02:24:43 + (( j++ ))
02:24:43 + (( j<=2 ))
02:24:43 ++ omero obj new Dataset 'name=Dataset 1-2'
02:24:45 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:45 + dataset=Dataset:152
02:24:45 + omero obj new ProjectDatasetLink parent=Project:151 child=Dataset:152
02:24:47 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:47 ProjectDatasetLink:152
02:24:47 + echo 'Importing image into dataset'
02:24:47 Importing image into dataset
02:24:47 + omero import -d Dataset:152 test.fake --debug ERROR
02:24:51 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:51 2026-07-13 02:24:51,725 225 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:24:51 2026-07-13 02:24:51,738 238 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:24:54 Image:152
02:24:54 Other imported objects:
02:24:54 Fileset:152
02:24:54
02:24:54 ==> Summary
02:24:54 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.626
02:24:55 + (( j++ ))
02:24:55 + (( j<=2 ))
02:24:55 + (( i++ ))
02:24:55 + (( i<=1 ))
02:24:55 + (( j=1 ))
02:24:55 + (( j<=2 ))
02:24:55 + omero obj new Dataset 'name=Orphaned dataset 1'
02:24:56 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:56 Dataset:153
02:24:57 + (( j++ ))
02:24:57 + (( j<=2 ))
02:24:57 + omero obj new Dataset 'name=Orphaned dataset 2'
02:24:58 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:24:58 Dataset:154
02:24:58 + (( j++ ))
02:24:58 + (( j<=2 ))
02:24:58 + echo 'Importing image file'
02:24:58 Importing image file
02:24:58 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
02:24:58 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
02:25:06 ++ sed -n -e 's/^Image://p' image_import.log
02:25:06 + imageid=153
02:25:06 ++ omero obj new MapAnnotation
02:25:08 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:08 + MAP=MapAnnotation:151
02:25:08 + omero obj map-set MapAnnotation:151 mapValue testkey testvalue
02:25:10 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:10 MapAnnotation:151
02:25:10 + omero obj new ImageAnnotationLink parent=Image:153 child=MapAnnotation:151
02:25:12 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:12 ImageAnnotationLink:151
02:25:13 ++ omero obj new Screen name=Screen
02:25:15 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:15 + screen=Screen:151
02:25:15 ++ omero obj new Plate name=Plate
02:25:17 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:17 + plate=Plate:151
02:25:17 + omero obj new ScreenPlateLink parent=Screen:151 child=Plate:151
02:25:19 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:19 ScreenPlateLink:151
02:25:19 + echo 'Importing SPW file'
02:25:19 Importing SPW file
02:25:19 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
02:25:19 + omero import -r Screen:151 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
02:25:28 ++ sed -n -e 's/^Plate://p' plate_import.log
02:25:28 + plateid=152
02:25:28 + omero logout
02:25:30 + omero login training_user-2@5a50d333d1f0:4064 -w ome -g training_group
02:25:32 Created session for training_user-2@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:33 + omero obj new Project 'name=Project 0'
02:25:35 Using session for training_user-2@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:35 Project:152
02:25:35 + omero obj new Dataset 'name=Dataset 0'
02:25:37 Using session for training_user-2@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:37 Dataset:155
02:25:37 + omero import test.fake --debug ERROR
02:25:40 Using session for training_user-2@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:40 2026-07-13 02:25:40,826 222 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:25:40 2026-07-13 02:25:40,844 240 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:25:43 Image:157
02:25:43 Other imported objects:
02:25:43 Fileset:155
02:25:43
02:25:43 ==> Summary
02:25:43 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.313
02:25:43 + omero obj new Screen name=Screen
02:25:46 Using session for training_user-2@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:46 Screen:152
02:25:46 + omero obj new Plate name=Plate
02:25:48 Using session for training_user-2@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group
02:25:48 Plate:153
02:25:49 + omero login training_user@5a50d333d1f0:4064 -w ome -g training_group-2
02:25:51 Created session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group-2
02:25:52 + omero obj new Project 'name=Project 0'
02:25:54 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group-2
02:25:54 Project:153
02:25:54 + omero obj new Dataset 'name=Dataset 0'
02:25:57 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group-2
02:25:57 Dataset:156
02:25:57 + omero import test.fake --debug ERROR
02:26:00 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group-2
02:26:01 2026-07-13 02:26:01,164 218 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
02:26:01 2026-07-13 02:26:01,177 231 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
02:26:03 Image:158
02:26:03 Other imported objects:
02:26:03 Fileset:156
02:26:03
02:26:03 ==> Summary
02:26:03 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.134
02:26:03 + omero obj new Screen name=Screen
02:26:05 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group-2
02:26:05 Screen:153
02:26:06 + omero obj new Plate name=Plate
02:26:08 Using session for training_user@5a50d333d1f0:4064. Idle timeout: 10 min. Current group: training_group-2
02:26:08 Plate:154
02:26:08 + omero logout
02:26:10 + echo omero.host=5a50d333d1f0
02:26:10 + echo omero.port=4064
02:26:10 + echo omero.webhost=http://nginx/web
02:26:10 + echo omero.servername=omero
02:26:10 + echo omero.user=training_user
02:26:10 + echo omero.pass=ome
02:26:10 + echo omero.group=training_group
02:26:10 + echo omero.projectid=151
02:26:10 + echo omero.datasetid=152
02:26:10 + echo omero.imageid=153
02:26:10 + echo omero.plateid=152
02:26:10 + echo omero.screenid=151
02:26:10 + echo omero.group2=training_group-2
02:26:10 + echo omero.ladmin=ladmin_user
02:26:10 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
02:26:10 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
02:26:10 + omero sessions clear
02:26:12 1 session(s) cleared
02:26:12 !! 07/13/26 02:26:12.633 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
02:26:12 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
02:26:12 + pip install --upgrade requests
02:26:13 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.34.2)
02:26:13 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.9)
02:26:13 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.18)
02:26:13 Requirement already satisfied: urllib3<3,>=1.26 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.7.0)
02:26:13 Requirement already satisfied: certifi>=2023.5.7 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.6.17)
02:26:13 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
02:26:23 Running training suite
02:26:23 created 20 shapes
02:26:23 retrieved 20 shapes in 4 batches
02:26:23 Current user:
02:26:23 ID: 2
02:26:23 Username: training_user
02:26:23 Full Name: training_user training_user
02:26:23 Is Admin: False
02:26:23 []
02:26:23 Member of:
02:26:23 ID: 3 Name: training_group
02:26:23 ID: 4 Name: training_group-2
02:26:23 Current group: training_group
02:26:23 Group owners:
02:26:23 Group members:
02:26:23 ID: 2 UserName: training_user Name: training_user training_user
02:26:23 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
02:26:23 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
02:26:23 Owner of:
02:26:23 Admins:
02:26:23 ID: 0 UserName: root Name: root root
02:26:23 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
02:26:23 ID: 52 UserName: <hidden> Name: <hidden> <hidden>
02:26:23 Created new Image:159 Name:"numpy image"
02:26:23 newPlane for z,t: 0 0 uint8 0 127
02:26:23 newPlane for z,t: 0 1 uint8 0 127
02:26:23 newPlane for z,t: 0 2 uint8 0 127
02:26:23 newPlane for z,t: 0 3 uint8 0 127
02:26:23 newPlane for z,t: 0 4 uint8 0 127
02:26:23 newPlane for z,t: 0 5 uint8 0 127
02:26:23 newPlane for z,t: 0 6 uint8 0 127
02:26:23 newPlane for z,t: 0 7 uint8 0 127
02:26:23 newPlane for z,t: 0 8 uint8 0 127
02:26:23 newPlane for z,t: 0 9 uint8 0 127
02:26:23 newPlane for z,t: 1 0 uint8 0 127
02:26:23 newPlane for z,t: 1 1 uint8 0 127
02:26:23 newPlane for z,t: 1 2 uint8 0 127
02:26:23 newPlane for z,t: 1 3 uint8 0 127
02:26:23 newPlane for z,t: 1 4 uint8 0 127
02:26:23 newPlane for z,t: 1 5 uint8 0 127
02:26:23 newPlane for z,t: 1 6 uint8 0 127
02:26:23 newPlane for z,t: 1 7 uint8 0 127
02:26:23 newPlane for z,t: 1 8 uint8 0 127
02:26:23 newPlane for z,t: 1 9 uint8 0 127
02:26:23 newPlane for z,t: 2 0 uint8 0 127
02:26:23 newPlane for z,t: 2 1 uint8 0 127
02:26:23 newPlane for z,t: 2 2 uint8 0 127
02:26:23 newPlane for z,t: 2 3 uint8 0 127
02:26:23 newPlane for z,t: 2 4 uint8 0 127
02:26:23 newPlane for z,t: 2 5 uint8 0 127
02:26:23 newPlane for z,t: 2 6 uint8 0 127
02:26:23 newPlane for z,t: 2 7 uint8 0 127
02:26:23 newPlane for z,t: 2 8 uint8 0 127
02:26:23 newPlane for z,t: 2 9 uint8 0 127
02:26:23 newPlane for z,t: 3 0 uint8 0 127
02:26:23 newPlane for z,t: 3 1 uint8 0 127
02:26:23 newPlane for z,t: 3 2 uint8 0 127
02:26:23 newPlane for z,t: 3 3 uint8 0 127
02:26:23 newPlane for z,t: 3 4 uint8 0 127
02:26:23 newPlane for z,t: 3 5 uint8 0 127
02:26:23 newPlane for z,t: 3 6 uint8 0 127
02:26:23 newPlane for z,t: 3 7 uint8 0 127
02:26:23 newPlane for z,t: 3 8 uint8 0 127
02:26:23 newPlane for z,t: 3 9 uint8 0 127
02:26:23 newPlane for z,t: 4 0 uint8 0 127
02:26:23 newPlane for z,t: 4 1 uint8 0 127
02:26:23 newPlane for z,t: 4 2 uint8 0 127
02:26:23 newPlane for z,t: 4 3 uint8 0 127
02:26:23 newPlane for z,t: 4 4 uint8 0 127
02:26:23 newPlane for z,t: 4 5 uint8 0 127
02:26:23 newPlane for z,t: 4 6 uint8 0 127
02:26:23 newPlane for z,t: 4 7 uint8 0 127
02:26:23 newPlane for z,t: 4 8 uint8 0 127
02:26:23 newPlane for z,t: 4 9 uint8 0 127
02:26:23 Deleting, please wait.
02:26:23 Error? False
02:26:23 153 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:26:23 training_user_2/Blitz-0-Ice.ThreadPool.Server-8/2026-07/13/02-25-04.217/ test&sizeT=10&sizeZ=5&sizeC=3.fake
02:26:23 1
02:26:23 training_user_2/Blitz-0-Ice.ThreadPool.Server-8/2026-07/13/02-25-04.217/ test&sizeT=10&sizeZ=5&sizeC=3.fake
02:26:23 Current group: training_group
02:26:23 Permissions: READ-ONLY (rwr---)
02:26:23 Project 0 Owner: training_user-2 training_user-2
02:26:23 Project 0 Owner: training_user-2 training_user-2
02:26:23 Project 0 Owner: training_user-2 training_user-2
02:26:23 Project 0 Owner: training_user-2 training_user-2
02:26:23 Project 1 Owner: training_user training_user
02:26:23 Project 1 Owner: training_user training_user
02:26:23 Project 1 Owner: training_user training_user
02:26:23 Project 1 Owner: training_user training_user
02:26:23 Image: <_ImageWrapper id=153>
02:26:23 Image: <_ImageWrapper id=153> Group: training_group 3
02:26:23 Image: <_ImageWrapper id=153> Channel: 0
02:26:23 Channel: 1
02:26:23 Channel: 2
02:26:23
02:26:23
02:26:23 original_metadata
02:26:23 global_metadata
02:26:23 series_metadata
02:26:23
02:26:23 Plane at zct: 0 0 0
02:26:23 [[ 0 0 0 ... 253 254 255]
02:26:23 [ 0 0 0 ... 253 254 255]
02:26:23 [ 0 0 0 ... 253 254 255]
02:26:23 ...
02:26:23 [ 0 1 2 ... 253 254 255]
02:26:23 [ 0 1 2 ... 253 254 255]
02:26:23 [ 0 1 2 ... 253 254 255]]
02:26:23 shape: (512, 512)
02:26:23 min: 0 max: 255 pixel type: uint8
02:26:23
02:26:23 Z stack of tiles:
02:26:23 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:26:23 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:26:23 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:26:23 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:26:23 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
02:26:23
02:26:23 Hyper stack of planes:
02:26:23 plane zct: (2, 0, 0) min: 0 max: 255
02:26:23 plane zct: (2, 0, 1) min: 0 max: 255
02:26:23 plane zct: (2, 0, 2) min: 0 max: 255
02:26:23 plane zct: (2, 0, 3) min: 0 max: 255
02:26:23 plane zct: (2, 0, 4) min: 0 max: 255
02:26:23 plane zct: (2, 0, 5) min: 0 max: 255
02:26:23 plane zct: (2, 0, 6) min: 0 max: 255
02:26:23 plane zct: (2, 0, 7) min: 0 max: 255
02:26:23 plane zct: (2, 0, 8) min: 0 max: 255
02:26:23 plane zct: (2, 0, 9) min: 0 max: 255
02:26:23 plane zct: (2, 1, 0) min: 0 max: 255
02:26:23 plane zct: (2, 1, 1) min: 0 max: 255
02:26:23 plane zct: (2, 1, 2) min: 0 max: 255
02:26:23 plane zct: (2, 1, 3) min: 0 max: 255
02:26:23 plane zct: (2, 1, 4) min: 0 max: 255
02:26:23 plane zct: (2, 1, 5) min: 0 max: 255
02:26:23 plane zct: (2, 1, 6) min: 0 max: 255
02:26:23 plane zct: (2, 1, 7) min: 0 max: 255
02:26:23 plane zct: (2, 1, 8) min: 0 max: 255
02:26:23 plane zct: (2, 1, 9) min: 0 max: 255
02:26:23 plane zct: (2, 2, 0) min: 0 max: 255
02:26:23 plane zct: (2, 2, 1) min: 0 max: 255
02:26:23 plane zct: (2, 2, 2) min: 0 max: 255
02:26:23 plane zct: (2, 2, 3) min: 0 max: 255
02:26:23 plane zct: (2, 2, 4) min: 0 max: 255
02:26:23 plane zct: (2, 2, 5) min: 0 max: 255
02:26:23 plane zct: (2, 2, 6) min: 0 max: 255
02:26:23 plane zct: (2, 2, 7) min: 0 max: 255
02:26:23 plane zct: (2, 2, 8) min: 0 max: 255
02:26:23 plane zct: (2, 2, 9) min: 0 max: 255
02:26:23 plane zct: (3, 0, 0) min: 0 max: 255
02:26:23 plane zct: (3, 0, 1) min: 0 max: 255
02:26:23 plane zct: (3, 0, 2) min: 0 max: 255
02:26:23 plane zct: (3, 0, 3) min: 0 max: 255
02:26:23 plane zct: (3, 0, 4) min: 0 max: 255
02:26:23 plane zct: (3, 0, 5) min: 0 max: 255
02:26:23 plane zct: (3, 0, 6) min: 0 max: 255
02:26:23 plane zct: (3, 0, 7) min: 0 max: 255
02:26:23 plane zct: (3, 0, 8) min: 0 max: 255
02:26:23 plane zct: (3, 0, 9) min: 0 max: 255
02:26:23 plane zct: (3, 1, 0) min: 0 max: 255
02:26:23 plane zct: (3, 1, 1) min: 0 max: 255
02:26:23 plane zct: (3, 1, 2) min: 0 max: 255
02:26:23 plane zct: (3, 1, 3) min: 0 max: 255
02:26:23 plane zct: (3, 1, 4) min: 0 max: 255
02:26:23 plane zct: (3, 1, 5) min: 0 max: 255
02:26:23 plane zct: (3, 1, 6) min: 0 max: 255
02:26:23 plane zct: (3, 1, 7) min: 0 max: 255
02:26:23 plane zct: (3, 1, 8) min: 0 max: 255
02:26:23 plane zct: (3, 1, 9) min: 0 max: 255
02:26:23 plane zct: (3, 2, 0) min: 0 max: 255
02:26:23 plane zct: (3, 2, 1) min: 0 max: 255
02:26:23 plane zct: (3, 2, 2) min: 0 max: 255
02:26:23 plane zct: (3, 2, 3) min: 0 max: 255
02:26:23 plane zct: (3, 2, 4) min: 0 max: 255
02:26:23 plane zct: (3, 2, 5) min: 0 max: 255
02:26:23 plane zct: (3, 2, 6) min: 0 max: 255
02:26:23 plane zct: (3, 2, 7) min: 0 max: 255
02:26:23 plane zct: (3, 2, 8) min: 0 max: 255
02:26:23 plane zct: (3, 2, 9) min: 0 max: 255
02:26:23 plane zct: (4, 0, 0) min: 0 max: 255
02:26:23 plane zct: (4, 0, 1) min: 0 max: 255
02:26:23 plane zct: (4, 0, 2) min: 0 max: 255
02:26:23 plane zct: (4, 0, 3) min: 0 max: 255
02:26:23 plane zct: (4, 0, 4) min: 0 max: 255
02:26:23 plane zct: (4, 0, 5) min: 0 max: 255
02:26:23 plane zct: (4, 0, 6) min: 0 max: 255
02:26:23 plane zct: (4, 0, 7) min: 0 max: 255
02:26:23 plane zct: (4, 0, 8) min: 0 max: 255
02:26:23 plane zct: (4, 0, 9) min: 0 max: 255
02:26:23 plane zct: (4, 1, 0) min: 0 max: 255
02:26:23 plane zct: (4, 1, 1) min: 0 max: 255
02:26:23 plane zct: (4, 1, 2) min: 0 max: 255
02:26:23 plane zct: (4, 1, 3) min: 0 max: 255
02:26:23 plane zct: (4, 1, 4) min: 0 max: 255
02:26:23 plane zct: (4, 1, 5) min: 0 max: 255
02:26:23 plane zct: (4, 1, 6) min: 0 max: 255
02:26:23 plane zct: (4, 1, 7) min: 0 max: 255
02:26:23 plane zct: (4, 1, 8) min: 0 max: 255
02:26:23 plane zct: (4, 1, 9) min: 0 max: 255
02:26:23 plane zct: (4, 2, 0) min: 0 max: 255
02:26:23 plane zct: (4, 2, 1) min: 0 max: 255
02:26:23 plane zct: (4, 2, 2) min: 0 max: 255
02:26:23 plane zct: (4, 2, 3) min: 0 max: 255
02:26:23 plane zct: (4, 2, 4) min: 0 max: 255
02:26:23 plane zct: (4, 2, 5) min: 0 max: 255
02:26:23 plane zct: (4, 2, 6) min: 0 max: 255
02:26:23 plane zct: (4, 2, 7) min: 0 max: 255
02:26:23 plane zct: (4, 2, 8) min: 0 max: 255
02:26:23 plane zct: (4, 2, 9) min: 0 max: 255
02:26:23 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
02:26:26
02:26:26 List Projects:
02:26:26 ==================================================
02:26:26 Project:1 Name:"Project 1" (owner=training_user)
02:26:26 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
02:26:26 Image:1 Name:"test.fake" (owner=training_user)
02:26:26 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
02:26:26 Image:12 Name:"New Image" (owner=training_user)
02:26:26 Image:13 Name:"newImageFrom3" (owner=training_user)
02:26:26 Image:2 Name:"test.fake" (owner=training_user)
02:26:26 Dataset:7 Name:"New Dataset" (owner=training_user)
02:26:26 Dataset:17 Name:"new Name 1" (owner=training_user)
02:26:26 Dataset:18 Name:"new Name 2" (owner=training_user)
02:26:26 Project:51 Name:"Project 1" (owner=training_user)
02:26:26 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
02:26:26 Image:51 Name:"test.fake" (owner=training_user)
02:26:26 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
02:26:26 Image:62 Name:"New Image" (owner=training_user)
02:26:26 Image:63 Name:"newImageFrom53" (owner=training_user)
02:26:26 Image:52 Name:"test.fake" (owner=training_user)
02:26:26 Dataset:57 Name:"New Dataset" (owner=training_user)
02:26:26 Dataset:67 Name:"new Name 1" (owner=training_user)
02:26:26 Dataset:68 Name:"new Name 2" (owner=training_user)
02:26:26 Project:101 Name:"Project 1" (owner=training_user)
02:26:26 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
02:26:26 Image:101 Name:"test.fake" (owner=training_user)
02:26:26 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
02:26:26 Image:112 Name:"New Image" (owner=training_user)
02:26:26 Image:113 Name:"newImageFrom103" (owner=training_user)
02:26:26 Image:102 Name:"test.fake" (owner=training_user)
02:26:26 Dataset:107 Name:"New Dataset" (owner=training_user)
02:26:26 Dataset:117 Name:"new Name 1" (owner=training_user)
02:26:26 Dataset:118 Name:"new Name 2" (owner=training_user)
02:26:26 Project:151 Name:"Project 1" (owner=training_user)
02:26:26 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
02:26:26 Image:151 Name:"test.fake" (owner=training_user)
02:26:26 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
02:26:26 Image:152 Name:"test.fake" (owner=training_user)
02:26:26
02:26:26 List orphaned Datasets:
02:26:26 ==================================================
02:26:26 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
02:26:26 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
02:26:26 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
02:26:26 Dataset:10 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:9 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:8 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:11 Name:"New Dataset" (owner=training_user)
02:26:26 Dataset:12 Name:"New Dataset2" (owner=training_user)
02:26:26 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
02:26:26 Dataset:14 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:15 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:16 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
02:26:26 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
02:26:26 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
02:26:26 Dataset:60 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:59 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:58 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:61 Name:"New Dataset" (owner=training_user)
02:26:26 Dataset:62 Name:"New Dataset2" (owner=training_user)
02:26:26 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
02:26:26 Dataset:64 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:65 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:66 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
02:26:26 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
02:26:26 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
02:26:26 Dataset:110 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:109 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:108 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:111 Name:"New Dataset" (owner=training_user)
02:26:26 Dataset:112 Name:"New Dataset2" (owner=training_user)
02:26:26 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
02:26:26 Dataset:114 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:115 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:116 Name:"MyDataset" (owner=training_user)
02:26:26 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
02:26:26 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
02:26:26 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
02:26:26
02:26:26 Images in Dataset: 152
02:26:26 ==================================================
02:26:26 Image:152 Name:"test.fake" (owner=training_user)
02:26:26
02:26:26 Image:153
02:26:26 ==================================================
02:26:26 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:26:26 X: 512
02:26:26 Y: 512
02:26:26 Z: 5
02:26:26 C: 3
02:26:26 T: 10
02:26:26 Channel: 0 Color: (255, 0, 0)
02:26:26 Lookup table: None
02:26:26 Is reverse intensity? False
02:26:26 Channel: 1 Color: (0, 255, 0)
02:26:26 Lookup table: None
02:26:26 Is reverse intensity? False
02:26:26 Channel: 2 Color: (0, 0, 255)
02:26:26 Lookup table: None
02:26:26 Is reverse intensity? False
02:26:26 Pixel Size X: None
02:26:26
02:26:26 List Screens:
02:26:26 ==================================================
02:26:26 Screen:1 Name:"Screen" (owner=training_user)
02:26:26 Plate:1 Name:"Plate" (owner=training_user)
02:26:26 Plate:2 Name:"Plate Name 0" (owner=training_user)
02:26:26 Screen:51 Name:"Screen" (owner=training_user)
02:26:26 Plate:51 Name:"Plate" (owner=training_user)
02:26:26 Plate:52 Name:"Plate Name 0" (owner=training_user)
02:26:26 Screen:101 Name:"Screen" (owner=training_user)
02:26:26 Plate:101 Name:"Plate" (owner=training_user)
02:26:26 Plate:102 Name:"Plate Name 0" (owner=training_user)
02:26:26 Screen:151 Name:"Screen" (owner=training_user)
02:26:26 Plate:151 Name:"Plate" (owner=training_user)
02:26:26 Plate:152 Name:"Plate Name 0" (owner=training_user)
02:26:26 Screen:2 Name:"Screen" (owner=training_user-2)
02:26:26 Screen:52 Name:"Screen" (owner=training_user-2)
02:26:26 Screen:102 Name:"Screen" (owner=training_user-2)
02:26:26 Screen:152 Name:"Screen" (owner=training_user-2)
02:26:26
02:26:26 Plate:152
02:26:26 ==================================================
02:26:26
02:26:26 Number of fields: (0, 0)
02:26:26
02:26:26 Grid size: {'rows': 1, 'columns': 3}
02:26:26
02:26:26 Wells in Plate: Plate Name 0
02:26:26 Well: 0 0 Fields: 1
02:26:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 154
02:26:26 Well: 0 1 Fields: 1
02:26:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 156
02:26:26 Well: 0 2 Fields: 1
02:26:26 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 155
02:26:26 151 <class 'omero.model.MapAnnotationI'>
02:26:26 added by training_user
02:26:26 Image ID: 153
02:26:26 Annotation ID: 151
02:26:26 153
02:26:26 Channel rendering settings:
02:26:26 Name: 0
02:26:26 Color: FF0000
02:26:26 Active: True
02:26:26 Levels: 0.0 - 255.0
02:26:26 Name: 1
02:26:26 Color: 00FF00
02:26:26 Active: True
02:26:26 Levels: 0.0 - 255.0
02:26:26 Name: 2
02:26:26 Color: 0000FF
02:26:26 Active: True
02:26:26 Levels: 0.0 - 255.0
02:26:26 isGreyscaleRenderingModel: False
02:26:26 Default Z/T positions:
02:26:26 Z = 2, T = 0
02:26:26 Rendering Defs on Image:
02:26:26 ID: 153 (owner: training_user training_user)
02:26:26 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
02:26:26 ROI: ID: 152
02:26:26 Shape: id 171 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
02:26:26 Shape: id 172 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
02:26:26 ROI: ID: 153
02:26:26 Shape: id 173 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
02:26:26 ROI: ID: 154
02:26:26 Shape: id 174 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
02:26:26 ROI: ID: 155
02:26:26 Shape: id 175 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
02:26:26 ROI: ID: 156
02:26:26 <class 'omero.model.PolygonI'> Not supported by this code
02:26:26 Shape: id 176 theT 0 theZ 2 textValue test-Polygon
02:26:26 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
02:26:26 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
02:26:26 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
02:26:26 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
02:26:26 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
02:26:26 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
02:26:26 Removing Shape from ROI...
02:26:26 Deleting ROI: 157
02:26:26 Table Columns:
02:26:26 Uid
02:26:26 MyStringColumnInit
02:26:26 Row count: 10
02:26:26
02:26:26 Get All Data for rows: [3, 5, 7]
02:26:26 Data for Column: Uid
02:26:26 1
02:26:26 2
02:26:26 3
02:26:26 4
02:26:26 5
02:26:26 6
02:26:26 7
02:26:26 8
02:26:26 9
02:26:26 10
02:26:26 Data for Column: MyStringColumnInit
02:26:26 one
02:26:26 two
02:26:26 three
02:26:26 four
02:26:26 five
02:26:26 six
02:26:26 seven
02:26:26 eight
02:26:38 nine
02:26:38 ten
02:26:38
02:26:38 Get All Data for rows with slice: [3, 5, 7]
02:26:38 Data for Column: Uid
02:26:38 4
02:26:38 6
02:26:38 8
02:26:38 Data for Column: MyStringColumnInit
02:26:38 four
02:26:38 six
02:26:38 eight
02:26:38
02:26:38 Get Data for cols: [1] and between rows: 3 - 7
02:26:38 Data for Column: MyStringColumnInit
02:26:38 four
02:26:38 five
02:26:38 six
02:26:38 seven
02:26:38
02:26:38 Get Data for cols: [1] and between rows: 3 - 7 with slice
02:26:38 Data for Column: MyStringColumnInit
02:26:38 four
02:26:38 five
02:26:38 six
02:26:38 seven
02:26:38 Query Results for Column: Uid
02:26:38 3
02:26:38 4
02:26:38 5
02:26:38 6
02:26:38 7
02:26:38 8
02:26:38 Query Results for Column: MyStringColumnInit
02:26:38 three
02:26:38 four
02:26:38 five
02:26:38 six
02:26:38 seven
02:26:38 eight
02:26:38 Opened table with row-count: 10
02:26:38 New dataset, Id: 157
02:26:38 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
02:26:38 155 <class 'omero.model.TagAnnotationI'> added by training_user
02:26:38 Tag value: New Tag
02:26:38 156 <class 'omero.model.MapAnnotationI'> added by training_user
02:26:38
02:26:38 Creating an OriginalFile and FileAnnotation
02:26:38 Attaching FileAnnotation to Dataset: File ID: 157 , README.txt Size: 15
02:26:38
02:26:38 Annotations on Dataset: New Dataset
02:26:38 File ID: 450 README.txt Size: 15
02:26:38
02:26:38 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
02:26:38 File downloaded!
02:26:38 107 README.txt
02:26:38 7 README.txt
02:26:38 57 README.txt
02:26:38 157 README.txt
02:26:38 Found Annotation with namespace: imperial.training.demo
02:26:38 Plane: 0 0 0
02:26:38 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
02:26:38 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
02:26:38
02:26:38 List Datasets:
02:26:38 ID: 160 Name: MyDataset
02:26:38 ID: 159 Name: MyDataset
02:26:38 ID: 158 Name: MyDataset
02:26:38 ID: 116 Name: MyDataset
02:26:38 ID: 115 Name: MyDataset
02:26:38 ID: 114 Name: MyDataset
02:26:38 ID: 110 Name: MyDataset
02:26:38 ID: 109 Name: MyDataset
02:26:38 ID: 108 Name: MyDataset
02:26:38 ID: 66 Name: MyDataset
02:26:38 ID: 65 Name: MyDataset
02:26:38 ID: 64 Name: MyDataset
02:26:38 ID: 60 Name: MyDataset
02:26:38 ID: 59 Name: MyDataset
02:26:38 ID: 58 Name: MyDataset
02:26:38 ID: 16 Name: MyDataset
02:26:38 ID: 15 Name: MyDataset
02:26:38 ID: 14 Name: MyDataset
02:26:38 ID: 10 Name: MyDataset
02:26:38 ID: 9 Name: MyDataset
02:26:38 ID: 8 Name: MyDataset
02:26:38
02:26:38 List Tags:
02:26:38 ID: 8 Text: MyTag Desc: MyTag 0
02:26:38 ID: 9 Text: MyTag Desc: MyTag 1
02:26:38 ID: 10 Text: MyTag Desc: MyTag 2
02:26:38 ID: 16 Text: MyTag Desc: MyTag 0
02:26:38 ID: 17 Text: MyTag Desc: MyTag 1
02:26:38 ID: 18 Text: MyTag Desc: MyTag 2
02:26:38 ID: 58 Text: MyTag Desc: MyTag 0
02:26:38 ID: 59 Text: MyTag Desc: MyTag 1
02:26:38 ID: 60 Text: MyTag Desc: MyTag 2
02:26:38 ID: 66 Text: MyTag Desc: MyTag 0
02:26:38 ID: 67 Text: MyTag Desc: MyTag 1
02:26:38 ID: 68 Text: MyTag Desc: MyTag 2
02:26:38 ID: 108 Text: MyTag Desc: MyTag 0
02:26:38 ID: 109 Text: MyTag Desc: MyTag 1
02:26:38 ID: 110 Text: MyTag Desc: MyTag 2
02:26:38 ID: 116 Text: MyTag Desc: MyTag 0
02:26:38 ID: 117 Text: MyTag Desc: MyTag 1
02:26:38 ID: 118 Text: MyTag Desc: MyTag 2
02:26:38 ID: 158 Text: MyTag Desc: MyTag 0
02:26:38 ID: 159 Text: MyTag Desc: MyTag 1
02:26:38 ID: 160 Text: MyTag Desc: MyTag 2
02:26:38 New dataset, Id: 161
02:26:38 New dataset 2, Id: 162
02:26:38 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:26:38 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
02:26:38 [[ 0 0 0 ... 102 103 104]
02:26:38 [ 0 0 0 ... 102 103 104]
02:26:38 [ 0 0 0 ... 102 103 104]
02:26:38 ...
02:26:38 [ 5 6 7 ... 102 103 104]
02:26:38 [ 5 6 7 ... 102 103 104]
02:26:38 [ 5 6 7 ... 102 103 104]]
02:26:38 shape: (100, 100)
02:26:38 min: 0 max: 104 pixel type: uint8
02:26:38 Average : 53.9125
02:26:38 Getting data for T, tile: 0 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 1 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 2 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 3 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 4 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 5 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 6 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 7 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 8 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 9 (256, 0, 10, 512)
02:26:38 kymograph_data (512, 100)
02:26:38 Attaching kymograph.png to image
02:26:38 test&sizeT=10&sizeZ=5&sizeC=3.fake
02:26:38 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
02:26:38 [[ 0 0 0 ... 102 103 104]
02:26:38 [ 0 0 0 ... 102 103 104]
02:26:38 [ 0 0 0 ... 102 103 104]
02:26:38 ...
02:26:38 [ 5 6 7 ... 102 103 104]
02:26:38 [ 5 6 7 ... 102 103 104]
02:26:38 [ 5 6 7 ... 102 103 104]]
02:26:38 shape: (100, 100)
02:26:38 min: 0 max: 104 pixel type: uint8
02:26:38 Average : 53.9125
02:26:38 Getting data for T, tile: 0 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 1 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 2 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 3 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 4 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 5 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 6 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 7 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 8 (256, 0, 10, 512)
02:26:38 Getting data for T, tile: 9 (256, 0, 10, 512)
02:26:38 kymograph_data (512, 100)
02:26:38 Attaching kymograph.png to image
02:26:38 No file downloaded. Project not rated.
02:26:38 New image, Id: 162
02:26:38 Starting at: http://nginx/web/api/
02:26:38 CSRF token TyjPmlHfFLRktorkl0VjVbVDn148HnSY
02:26:38 Servers:
02:26:38 -id: 1
02:26:38 name: omero
02:26:38 host: omero
02:26:38 port: 4064
02:26:38 -id: 2
02:26:38 name: testintegration
02:26:38 host: testintegration
02:26:38 port: 14064
02:26:38 eventContext {'sessionId': 464, 'sessionUuid': 'eb120fd7-4cfb-4d4f-ac56-92ceb1a09c3b', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
02:26:38 Projects:
02:26:38 2 Project 0
02:26:38 3 Project 0
02:26:38 Created Project: 156 API TEST foo
02:26:38 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 156, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/156/datasets/'}}
02:26:38 !! 07/13/26 02:26:38.429 error: communicator not destroyed during global destruction.+ deactivate
02:26:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
02:26:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:26:38 + export PATH
02:26:38 + unset _OLD_VIRTUAL_PATH
02:26:38 + '[' -n '' ']'
02:26:38 + hash -r
02:26:38 + '[' -n '' ']'
02:26:38 + unset VIRTUAL_ENV
02:26:38 + unset VIRTUAL_ENV_PROMPT
02:26:38 + '[' '!' '' = nondestructive ']'
02:26:38 + unset -f deactivate
02:26:38 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
02:26:38 + javac --release 11 -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
02:26:40 Note: Some input files use unchecked or unsafe operations.
02:26:40 Note: Recompile with -Xlint:unchecked for details.
02:26:40 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
02:26:44 omero.cmd.Delete2Response@5ed731d0
02:26:44 omero.cmd.Delete2Response@58e6d4b8
02:26:44 one [class java.lang.String] 1.0 [class java.lang.Double]
02:26:44 two [class java.lang.String] 2.0 [class java.lang.Double]
02:26:44 three [class java.lang.String] 3.0 [class java.lang.Double]
02:26:45 -1.0
02:26:45 0
02:26:45 1
02:26:45 2
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02:26:47 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
02:26:47 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
02:26:47 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
02:26:47 5 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
02:26:47 6 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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02:26:47 247 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 248 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 249 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 253 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 254 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
02:26:47 Project:52 Project 0
02:26:47 Project:101 Project 1
02:26:47 dataset:118 new Name 2
02:26:47 dataset:117 new Name 1
02:26:47 dataset:107 New Dataset
02:26:47 dataset:101 Dataset 1-1
02:26:47 dataset:102 Dataset 1-2
02:26:47 Project:152 Project 0
02:26:47 Project:1 Project 1
02:26:47 dataset:18 new Name 2
02:26:47 dataset:1 Dataset 1-1
02:26:47 dataset:2 Dataset 1-2
02:26:47 dataset:7 New Dataset
02:26:47 dataset:17 new Name 1
02:26:47 Project:51 Project 1
02:26:47 dataset:52 Dataset 1-2
02:26:47 dataset:51 Dataset 1-1
02:26:47 dataset:67 new Name 1
02:26:47 dataset:57 New Dataset
02:26:47 dataset:68 new Name 2
02:26:47 Project:102 Project 0
02:26:47 Project:2 Project 0
02:26:47 Project:151 Project 1
02:26:47 dataset:157 New Dataset
02:26:47 dataset:151 Dataset 1-1
02:26:47 dataset:152 Dataset 1-2
02:26:47 image:163 newImageFrom153
02:26:47 image:152 test.fake
02:26:47 image:162 New Image
02:26:47 5
02:26:47 10
02:26:47 3
02:26:47 512
02:26:47 512
02:26:47 screen:151 Screen
02:26:47 plate:152 Plate Name 0
02:26:47 plate:151 Plate
02:26:47 screen:101 Screen
02:26:47 plate:102 Plate Name 0
02:26:47 plate:101 Plate
02:26:47 screen:2 Screen
02:26:47 screen:1 Screen
02:26:47 plate:2 Plate Name 0
02:26:47 plate:1 Plate
02:26:47 screen:52 Screen
02:26:47 screen:102 Screen
02:26:47 screen:51 Screen
02:26:47 plate:52 Plate Name 0
02:26:47 plate:51 Plate
02:26:47 screen:152 Screen
02:26:47 well:153
02:26:47 well:152
02:26:47 well:151
02:26:47 plate:53
02:26:47 plate:152
02:26:47 plate:101
02:26:47 plate:51
02:26:47 plate:151
02:26:47 plate:52
02:26:47 plate:102
02:26:47 plate:103
02:26:47 plate:2
02:26:47 plate:3
02:26:47 plate:1
02:26:47 plate:153
02:26:47
02:26:47 List Datasets:
02:26:47 ID: 8 Name: MyDataset
02:26:47 ID: 9 Name: MyDataset
02:26:47 ID: 10 Name: MyDataset
02:26:47 ID: 14 Name: MyDataset
02:26:47 ID: 15 Name: MyDataset
02:26:47 ID: 16 Name: MyDataset
02:26:47 ID: 58 Name: MyDataset
02:26:47 ID: 59 Name: MyDataset
02:26:47 ID: 60 Name: MyDataset
02:26:47 ID: 64 Name: MyDataset
02:26:47
02:26:47 List Tags:
02:26:47 ID: 16 NS: omero.training.demo
02:26:47 ID: 17 NS: omero.training.demo
02:26:47 ID: 18 NS: omero.training.demo
02:26:47 ID: 66 NS: omero.training.demo
02:26:47 ID: 67 NS: omero.training.demo
02:26:47 ID: 68 NS: omero.training.demo
02:26:47 ID: 116 NS: omero.training.demo
02:26:47 ID: 117 NS: omero.training.demo
02:26:47 ID: 118 NS: omero.training.demo
02:26:47 ID: 166 NS: omero.training.demo
02:26:48 Dataset:10 MyDataset
02:26:48 Dataset:104 Orphaned dataset 2
02:26:48 Dataset:113 FileAnnotationDelete
02:26:48 Dataset:66 MyDataset
02:26:48 Dataset:15 MyDataset
02:26:48 Dataset:116 MyDataset
02:26:48 Dataset:61 New Dataset
02:26:48 Dataset:3 Orphaned dataset 1
02:26:48 Dataset:13 FileAnnotationDelete
02:26:48 Dataset:8 MyDataset
02:26:48 Dataset:159 MyDataset
02:26:48 Dataset:9 MyDataset
02:26:48 Dataset:14 MyDataset
02:26:48 Dataset:59 MyDataset
02:26:48 Dataset:165 MyDataset
02:26:48 Dataset:164 MyDataset
02:26:48 Dataset:162 New Dataset2
02:26:48 Dataset:115 MyDataset
02:26:48 Dataset:153 Orphaned dataset 1
02:26:48 Dataset:154 Orphaned dataset 2
02:26:48 Dataset:16 MyDataset
02:26:48 Project:51 Project 1
02:26:48 Dataset:112 New Dataset2
02:26:48 Project:1 Project 1
02:26:48 Dataset:65 MyDataset
02:26:48 Dataset:110 MyDataset
02:26:48 Dataset:63 FileAnnotationDelete
02:26:48 Project:101 Project 1
02:26:48 Dataset:58 MyDataset
02:26:48 Dataset:11 New Dataset
02:26:48 Dataset:54 Orphaned dataset 2
02:26:48 Dataset:4 Orphaned dataset 2
02:26:48 Dataset:109 MyDataset
02:26:48 Dataset:62 New Dataset2
02:26:48 Dataset:108 MyDataset
02:26:48 Dataset:60 MyDataset
02:26:48 Dataset:111 New Dataset
02:26:48 Dataset:160 MyDataset
02:26:48 Dataset:166 MyDataset
02:26:48 Dataset:12 New Dataset2
02:26:48 Dataset:53 Orphaned dataset 1
02:26:48 Dataset:64 MyDataset
02:26:48 Dataset:163 FileAnnotationDelete
02:26:48 Dataset:161 New Dataset
02:26:48 Project:151 Project 1
02:26:48 Dataset:103 Orphaned dataset 1
02:26:48 Dataset:114 MyDataset
02:26:48 Dataset:158 MyDataset
02:26:48 Size:0
02:26:48 512 512
02:26:48 9
02:26:48 9
02:26:49 1
02:26:50 Logged in as ladmin_user
02:26:50 Added 'training_user's tag' to dataset MyDataset on behalf of training_user
02:26:50 Added 'ladmin_user's tag' to dataset MyDataset as admin.
02:26:50 Finished: SUCCESS
