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15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/luts/wcif/ica3.lut
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/luts/wcif/magenta_hot.lut
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/luts/wcif/orange_hot.lut
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/luts/wcif/rainbow_rgb.lut
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/luts/wcif/red_hot.lut
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/luts/wcif/yellow_hot.lut
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/omero.class
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/setup.cfg
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/README.txt
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/Makefile
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/current.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/enums.py
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__1/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__1/OMERO3__7.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__10/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__10/OMERO3A__9.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__11/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__11/OMERO3A__10.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__11/OMERO3A__5.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__2/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__2/OMERO3A__1.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__3/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__3/OMERO3A__2.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__3/OMERO3__5.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__4/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__4/OMERO3A__3.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__4/OMERO3__5.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__5/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__5/OMERO3A__4.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__6/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__6/OMERO3A__5.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__7/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__7/OMERO3A__6.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__8/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__8/OMERO3A__6.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__9/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__9/OMERO3A__8.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__4/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__4/OMERO3__1.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__5/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__5/OMERO3__4.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__6/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__6/OMERO3__5.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__7/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__7/OMERO3__6.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.1__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.1__0/OMERO4__0.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/t/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.3__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.4__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4__0/OMERO3A__11.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.0__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.2__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__1/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__2/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__3/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
15:23:28 creating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/psql-footer.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/psql-header.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/schema.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/views.sql
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/test.xml
15:23:28 inflating: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/update_dependencies.sh
15:23:28 extracting: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/components/antlib/resources/gitversion.xml
15:23:28 extracting: openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6/components/tools/OmeroCpp/cmake/GitVersion.cmake
15:23:28 + rm -f openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:23:28 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-578-d52c0e2f83-ice36-b6 /home/omero/workspace/OMERO-training/openmicroscopy
15:23:28 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
15:23:28 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
15:23:28 ++ ls OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:23:28 + ZIP=OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:23:28 + DIST=OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6
15:23:28 + unzip -n OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:23:28 Archive: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/etc/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/etc/blitz/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/etc/grid/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/etc/profiles/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/etc/templates/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/etc/templates/error/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/etc/templates/grid/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/client/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/luts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/luts/janelia/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/luts/matplotlib/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/luts/ncsa_paledit/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/luts/seaborn/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/luts/wcif/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/omero/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/omero/analysis_scripts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/omero/annotation_scripts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/omero/export_scripts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/omero/figure_scripts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/omero/import_scripts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/scripts/omero/util_scripts/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/server/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__1/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__10/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__11/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__2/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__3/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__4/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__5/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__6/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__7/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__8/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__9/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__4/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__5/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__6/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__7/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.1__0/
15:23:28 creating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/
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15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/server/xercesImpl.jar
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/server/xml-apis-ext.jar
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/server/xml-apis.jar
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/server/xmlgraphics-commons.jar
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/server/xmpcore.jar
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/lib/server/xpp3.jar
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/README
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/agpl.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/antlr.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/apache-v1.1.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/apache-v2.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/asm.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/bouncy_castle_license.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/bsd.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/cddl-v1.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/cpl-v10.html
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/crystalclear.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/django.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/dom4j.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/epl-v1.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/fbsd.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/freemarker.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/gpl-v2.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/gpl.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/gtest.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/iconsweets_license.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/jamon.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/jmock.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/jquery.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/jtidy.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/lgpl-3.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/lgpl-v2.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/lgpl-v2.1.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/lgpl-v3.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/lgpl.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/matplotlib.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/mit.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/mpl-v1_0.htm
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/npl-1_1.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/path.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/pil.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/postgresql.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/psf-v2.0.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/psf-v2.5.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/scons.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/slf4j.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/tablelayout.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/which.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/zlib-libpng.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/share/licenses/zpl-v2.1.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/README.txt
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/Makefile
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/current.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/misc/enums.py
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__1/OMERO3__7.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__10/OMERO3A__9.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__11/OMERO3A__10.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__11/OMERO3A__5.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__2/OMERO3A__1.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__3/OMERO3A__2.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__3/OMERO3__5.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__4/OMERO3A__3.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__4/OMERO3__5.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__5/OMERO3A__4.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__6/OMERO3A__5.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__7/OMERO3A__6.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__8/OMERO3A__6.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3A__9/OMERO3A__8.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__4/OMERO3__1.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__5/OMERO3__4.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__6/OMERO3__5.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO3__7/OMERO3__6.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.1__0/OMERO4__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO4__0/OMERO3A__11.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/psql-footer.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/psql-header.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/schema.sql
15:23:31 inflating: OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6/sql/psql/OMERO5.4__0/views.sql
15:23:31 + rm -f OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6.zip
15:23:31 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-578-d52c0e2f83-ice36-b6 /home/omero/workspace/OMERO-training/OMERO.server
15:23:31 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
15:23:31 ++ deactivate nondestructive
15:23:31 ++ '[' -n '' ']'
15:23:31 ++ '[' -n '' ']'
15:23:31 ++ hash -r
15:23:31 ++ '[' -n '' ']'
15:23:31 ++ unset VIRTUAL_ENV
15:23:31 ++ unset VIRTUAL_ENV_PROMPT
15:23:31 ++ '[' '!' nondestructive = nondestructive ']'
15:23:31 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
15:23:31 ++ export VIRTUAL_ENV
15:23:31 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:23:31 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:23:31 ++ export PATH
15:23:31 ++ '[' -n '' ']'
15:23:31 ++ '[' -z '' ']'
15:23:31 ++ _OLD_VIRTUAL_PS1=
15:23:31 ++ PS1='(.venv3) '
15:23:31 ++ export PS1
15:23:31 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
15:23:31 ++ export VIRTUAL_ENV_PROMPT
15:23:31 ++ hash -r
15:23:31 + for x in *.gz
15:23:31 + pip install omero_dropbox-5.7.1.dev0.tar.gz
15:23:31 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
15:23:31 Installing build dependencies: started
15:23:32 Installing build dependencies: finished with status 'done'
15:23:32 Getting requirements to build wheel: started
15:23:32 Getting requirements to build wheel: finished with status 'done'
15:23:32 Preparing metadata (pyproject.toml): started
15:23:32 Preparing metadata (pyproject.toml): finished with status 'done'
15:23:32 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
15:23:32 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
15:23:32 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
15:23:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
15:23:32 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
15:23:32 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
15:23:32 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0)
15:23:33 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
15:23:33 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
15:23:33 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
15:23:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
15:23:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
15:23:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
15:23:33 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
15:23:33 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
15:23:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
15:23:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
15:23:33 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
15:23:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
15:23:33 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
15:23:33 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
15:23:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
15:23:33 Using cached future-1.0.0-py3-none-any.whl (491 kB)
15:23:33 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
15:23:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
15:23:33 Building wheels for collected packages: omero-dropbox
15:23:33 Building wheel for omero-dropbox (pyproject.toml): started
15:23:33 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
15:23:33 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=9ae34e3175add2ad0aed7fc45b4a124fb5b405f2b85ef5c1a9d2f5fdd4c79832
15:23:33 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
15:23:33 Successfully built omero-dropbox
15:23:33 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
15:23:35
15:23:35 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
15:23:36 + for x in *.gz
15:23:36 + pip install omero_marshal-0.9.2.dev0.tar.gz
15:23:36 Processing ./omero_marshal-0.9.2.dev0.tar.gz
15:23:36 Installing build dependencies: started
15:23:37 Installing build dependencies: finished with status 'done'
15:23:37 Getting requirements to build wheel: started
15:23:37 Getting requirements to build wheel: finished with status 'done'
15:23:37 Preparing metadata (pyproject.toml): started
15:23:37 Preparing metadata (pyproject.toml): finished with status 'done'
15:23:37 Building wheels for collected packages: omero_marshal
15:23:37 Building wheel for omero_marshal (pyproject.toml): started
15:23:37 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
15:23:37 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=1d917cbcd282a9addeb1c479cb8b79c4b8d2c3e041bec0ee2c8e51e9cce09fef
15:23:37 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
15:23:37 Successfully built omero_marshal
15:23:38 Installing collected packages: omero_marshal
15:23:38 Successfully installed omero_marshal-0.9.2.dev0
15:23:38 + for x in *.gz
15:23:38 + pip install omero_py-5.22.0.dev0.tar.gz
15:23:38 Processing ./omero_py-5.22.0.dev0.tar.gz
15:23:38 Installing build dependencies: started
15:23:39 Installing build dependencies: finished with status 'done'
15:23:39 Getting requirements to build wheel: started
15:23:39 Getting requirements to build wheel: finished with status 'done'
15:23:39 Preparing metadata (pyproject.toml): started
15:23:40 Preparing metadata (pyproject.toml): finished with status 'done'
15:23:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
15:23:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
15:23:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0)
15:23:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
15:23:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
15:23:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
15:23:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
15:23:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
15:23:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
15:23:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
15:23:40 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
15:23:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
15:23:40 Building wheels for collected packages: omero-py
15:23:40 Building wheel for omero-py (pyproject.toml): started
15:23:41 Building wheel for omero-py (pyproject.toml): finished with status 'done'
15:23:41 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=21af59f6db101acfb4bd415d7cb57c74ed5df399d463c9007933cbfbe5b337db
15:23:41 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
15:23:41 Successfully built omero-py
15:23:41 Installing collected packages: omero-py
15:23:41 Attempting uninstall: omero-py
15:23:41 Found existing installation: omero-py 5.21.3
15:23:41 Uninstalling omero-py-5.21.3:
15:23:42 Successfully uninstalled omero-py-5.21.3
15:23:44 Successfully installed omero-py-5.22.0.dev0
15:23:44 + for x in *.gz
15:23:44 + pip install omero_scripts-5.9.2.dev0.tar.gz
15:23:44 Processing ./omero_scripts-5.9.2.dev0.tar.gz
15:23:44 Installing build dependencies: started
15:23:45 Installing build dependencies: finished with status 'done'
15:23:45 Getting requirements to build wheel: started
15:23:45 Getting requirements to build wheel: finished with status 'done'
15:23:45 Preparing metadata (pyproject.toml): started
15:23:45 Preparing metadata (pyproject.toml): finished with status 'done'
15:23:45 Building wheels for collected packages: omero-scripts
15:23:45 Building wheel for omero-scripts (pyproject.toml): started
15:23:46 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
15:23:46 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=d144e21dde35490a09993aa79aa4dd8227b43bdb53ac7b8e545cdbc58c87343b
15:23:46 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
15:23:46 Successfully built omero-scripts
15:23:46 Installing collected packages: omero-scripts
15:23:46 Successfully installed omero-scripts-5.9.2.dev0
15:23:46 + for x in *.gz
15:23:46 + pip install omero_web-5.30.1.dev0.tar.gz
15:23:46 Processing ./omero_web-5.30.1.dev0.tar.gz
15:23:46 Installing build dependencies: started
15:23:47 Installing build dependencies: finished with status 'done'
15:23:47 Getting requirements to build wheel: started
15:23:48 Getting requirements to build wheel: finished with status 'done'
15:23:48 Preparing metadata (pyproject.toml): started
15:23:48 Preparing metadata (pyproject.toml): finished with status 'done'
15:23:48 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
15:23:48 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
15:23:48 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
15:23:48 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
15:23:48 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
15:23:48 Collecting django-pipeline (from omero-web==5.30.1.dev0)
15:23:48 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
15:23:48 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
15:23:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
15:23:48 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
15:23:48 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
15:23:48 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
15:23:48 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
15:23:48 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
15:23:48 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.1.0)
15:23:48 Collecting pytz (from omero-web==5.30.1.dev0)
15:23:48 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
15:23:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
15:23:48 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
15:23:48 Collecting importlib-resources (from omero-web==5.30.1.dev0)
15:23:48 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
15:23:48 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
15:23:48 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
15:23:48 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
15:23:48 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
15:23:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
15:23:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
15:23:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.4.0)
15:23:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
15:23:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
15:23:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
15:23:48 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
15:23:48 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
15:23:48 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
15:23:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
15:23:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
15:23:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
15:23:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
15:23:49 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
15:23:49 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
15:23:49 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
15:23:49 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
15:23:49 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
15:23:49 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
15:23:49 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
15:23:49 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
15:23:49 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
15:23:49 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
15:23:49 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
15:23:49 Building wheels for collected packages: omero-web
15:23:49 Building wheel for omero-web (pyproject.toml): started
15:23:50 Building wheel for omero-web (pyproject.toml): finished with status 'done'
15:23:50 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=a33b02536664fc6c4f9d161834fe793617759d6fe3885c0ffd328fadaf5726a8
15:23:50 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
15:23:50 Successfully built omero-web
15:23:50 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
15:23:52
15:23:52 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
15:23:52 + cd /home/omero/workspace/OMERO-training/OMERO.server
15:23:52 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
15:23:52 + HOSTNAME=9aa82dd07910
15:23:52 + PORT=4064
15:23:52 + WEBHOST=http://nginx/web
15:23:52 + SERVER_NAME=omero
15:23:52 + ROOT_PASSWORD=omero
15:23:52 + GROUP_NAME=training_group
15:23:52 + GROUP_NAME_2=training_group-2
15:23:52 + USER_NAME=training_user
15:23:52 + USER_NAME_2=training_user-2
15:23:52 + LIGHTADMIN_USER_NAME=ladmin_user
15:23:52 + USER_PASSWORD=ome
15:23:52 + CONFIG_FILENAME=training_ice.config
15:23:52 + omero login root@9aa82dd07910:4064 -w omero
15:23:53 Created session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:23:54 + omero group add training_group --type read-only --ignore-existing
15:23:54 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:23:54 Group exists: training_group (id=3)
15:23:55 + omero group add training_group-2 --type read-only --ignore-existing
15:23:55 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:23:55 Group exists: training_group-2 (id=4)
15:23:55 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
15:23:56 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:23:56 User exists: training_user (id=2)
15:23:56 + omero user joingroup --name training_user --group-name training_group training_group-2
15:23:57 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:23:57 2 is already in group 3
15:23:57 2 is already in group 4
15:23:57 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
15:23:58 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:23:58 User exists: training_user-2 (id=3)
15:23:58 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
15:23:59 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:23:59 3 is already in group 3
15:23:59 3 is already in group 4
15:23:59 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
15:24:00 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:24:00 User exists: ladmin_user (id=4)
15:24:00 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
15:24:01 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:24:01 4 is already in group 3
15:24:01 4 is already in group 4
15:24:01 ++ omero user info ladmin_user --style plain
15:24:01 ++ cut -d, -f1
15:24:02 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:24:02 + id=4
15:24:02 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
15:24:03 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
15:24:03 Experimenter:4
15:24:03 + omero logout
15:24:04 + touch test.fake
15:24:04 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group
15:24:05 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:05 + nProjects=1
15:24:05 + nDatasets=2
15:24:05 + echo 'Creating projects and datasets'
15:24:05 Creating projects and datasets
15:24:05 + (( i=1 ))
15:24:05 + (( i<=1 ))
15:24:05 ++ omero obj new Project 'name=Project 1'
15:24:06 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:06 + project=Project:201
15:24:06 + (( j=1 ))
15:24:06 + (( j<=2 ))
15:24:06 ++ omero obj new Dataset 'name=Dataset 1-1'
15:24:07 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:07 + dataset=Dataset:201
15:24:07 + omero obj new ProjectDatasetLink parent=Project:201 child=Dataset:201
15:24:08 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:08 ProjectDatasetLink:201
15:24:08 + echo 'Importing image into dataset'
15:24:08 Importing image into dataset
15:24:08 + omero import -d Dataset:201 test.fake --debug ERROR
15:24:09 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:09 2026-01-03 15:24:09,646 244 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
15:24:09 2026-01-03 15:24:09,662 260 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 4d4288e77fd5a6b9de2ae83c93d339f7c84b6025 date: 3 January 2026
15:24:17 Image:701
15:24:17 Other imported objects:
15:24:17 Fileset:201
15:24:17
15:24:17 ==> Summary
15:24:17 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.264
15:24:17 + (( j++ ))
15:24:17 + (( j<=2 ))
15:24:17 ++ omero obj new Dataset 'name=Dataset 1-2'
15:24:18 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:18 + dataset=Dataset:202
15:24:18 + omero obj new ProjectDatasetLink parent=Project:201 child=Dataset:202
15:24:19 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:19 ProjectDatasetLink:202
15:24:19 + echo 'Importing image into dataset'
15:24:19 Importing image into dataset
15:24:19 + omero import -d Dataset:202 test.fake --debug ERROR
15:24:20 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:20 2026-01-03 15:24:20,849 241 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
15:24:20 2026-01-03 15:24:20,864 256 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 4d4288e77fd5a6b9de2ae83c93d339f7c84b6025 date: 3 January 2026
15:24:22 2026-01-03 15:24:22,068 1460 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc."
15:24:23 Image:702
15:24:23 Other imported objects:
15:24:23 Fileset:202
15:24:23
15:24:23 ==> Summary
15:24:23 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.145
15:24:23 + (( j++ ))
15:24:23 + (( j<=2 ))
15:24:23 + (( i++ ))
15:24:23 + (( i<=1 ))
15:24:23 + (( j=1 ))
15:24:23 + (( j<=2 ))
15:24:23 + omero obj new Dataset 'name=Orphaned dataset 1'
15:24:24 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:24 Dataset:203
15:24:24 + (( j++ ))
15:24:24 + (( j<=2 ))
15:24:24 + omero obj new Dataset 'name=Orphaned dataset 2'
15:24:25 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:25 Dataset:204
15:24:25 + (( j++ ))
15:24:25 + (( j<=2 ))
15:24:25 + echo 'Importing image file'
15:24:25 Importing image file
15:24:25 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
15:24:25 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
15:24:30 ++ sed -n -e 's/^Image://p' image_import.log
15:24:30 + imageid=703
15:24:30 ++ omero obj new MapAnnotation
15:24:31 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:31 + MAP=MapAnnotation:201
15:24:31 + omero obj map-set MapAnnotation:201 mapValue testkey testvalue
15:24:32 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:32 MapAnnotation:201
15:24:32 + omero obj new ImageAnnotationLink parent=Image:703 child=MapAnnotation:201
15:24:33 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:33 ImageAnnotationLink:201
15:24:33 ++ omero obj new Screen name=Screen
15:24:34 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:34 + screen=Screen:201
15:24:34 ++ omero obj new Plate name=Plate
15:24:35 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:35 + plate=Plate:201
15:24:35 + omero obj new ScreenPlateLink parent=Screen:201 child=Plate:201
15:24:36 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:36 ScreenPlateLink:201
15:24:36 + echo 'Importing SPW file'
15:24:36 Importing SPW file
15:24:36 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
15:24:36 + omero import -r Screen:201 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
15:24:46 ++ sed -n -e 's/^Plate://p' plate_import.log
15:24:46 + plateid=202
15:24:46 + omero logout
15:24:47 + omero login training_user-2@9aa82dd07910:4064 -w ome -g training_group
15:24:48 Created session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:48 + omero obj new Project 'name=Project 0'
15:24:49 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:49 Project:202
15:24:49 + omero obj new Dataset 'name=Dataset 0'
15:24:50 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:50 Dataset:205
15:24:50 + omero import test.fake --debug ERROR
15:24:51 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:51 2026-01-03 15:24:51,700 301 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
15:24:51 2026-01-03 15:24:51,716 317 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 4d4288e77fd5a6b9de2ae83c93d339f7c84b6025 date: 3 January 2026
15:24:58 Image:707
15:24:58 Other imported objects:
15:24:58 Fileset:205
15:24:58
15:24:58 ==> Summary
15:24:58 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.784
15:24:58 + omero obj new Screen name=Screen
15:24:59 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:24:59 Screen:202
15:24:59 + omero obj new Plate name=Plate
15:25:00 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
15:25:00 Plate:203
15:25:00 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group-2
15:25:01 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
15:25:01 + omero obj new Project 'name=Project 0'
15:25:02 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
15:25:02 Project:203
15:25:02 + omero obj new Dataset 'name=Dataset 0'
15:25:03 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
15:25:03 Dataset:206
15:25:03 + omero import test.fake --debug ERROR
15:25:04 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
15:25:05 2026-01-03 15:25:05,036 299 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
15:25:05 2026-01-03 15:25:05,051 314 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 4d4288e77fd5a6b9de2ae83c93d339f7c84b6025 date: 3 January 2026
15:25:06 2026-01-03 15:25:06,246 1509 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc."
15:25:08 Image:708
15:25:08 Other imported objects:
15:25:08 Fileset:206
15:25:08
15:25:08 ==> Summary
15:25:08 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.874
15:25:08 + omero obj new Screen name=Screen
15:25:09 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
15:25:09 Screen:203
15:25:09 + omero obj new Plate name=Plate
15:25:10 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
15:25:10 Plate:204
15:25:10 + omero logout
15:25:11 + echo omero.host=9aa82dd07910
15:25:11 + echo omero.port=4064
15:25:11 + echo omero.webhost=http://nginx/web
15:25:11 + echo omero.servername=omero
15:25:11 + echo omero.user=training_user
15:25:11 + echo omero.pass=ome
15:25:11 + echo omero.group=training_group
15:25:11 + echo omero.projectid=201
15:25:11 + echo omero.datasetid=202
15:25:11 + echo omero.imageid=703
15:25:11 + echo omero.plateid=202
15:25:11 + echo omero.screenid=201
15:25:11 + echo omero.group2=training_group-2
15:25:11 + echo omero.ladmin=ladmin_user
15:25:11 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
15:25:11 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
15:25:11 + omero sessions clear
15:25:12 1 session(s) cleared
15:25:13 !! 01/03/26 15:25:13.059 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
15:25:13 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
15:25:13 + pip install --upgrade requests
15:25:13 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
15:25:13 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
15:25:13 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
15:25:13 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
15:25:13 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2025.11.12)
15:25:13 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
15:25:21 Running training suite
15:25:21 created 20 shapes
15:25:21 retrieved 20 shapes in 4 batches
15:25:21 Current user:
15:25:21 ID: 2
15:25:21 Username: training_user
15:25:21 Full Name: training_user training_user
15:25:21 Is Admin: False
15:25:21 []
15:25:21 Member of:
15:25:21 ID: 3 Name: training_group
15:25:21 ID: 4 Name: training_group-2
15:25:21 Current group: training_group
15:25:21 Group owners:
15:25:21 Group members:
15:25:21 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
15:25:21 ID: 2 UserName: training_user Name: training_user training_user
15:25:21 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
15:25:21 Owner of:
15:25:21 Admins:
15:25:21 ID: 0 UserName: root Name: root root
15:25:21 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
15:25:21 Created new Image:709 Name:"numpy image"
15:25:21 newPlane for z,t: 0 0 uint8 0 127
15:25:21 newPlane for z,t: 0 1 uint8 0 127
15:25:21 newPlane for z,t: 0 2 uint8 0 127
15:25:21 newPlane for z,t: 0 3 uint8 0 127
15:25:21 newPlane for z,t: 0 4 uint8 0 127
15:25:21 newPlane for z,t: 0 5 uint8 0 127
15:25:21 newPlane for z,t: 0 6 uint8 0 127
15:25:21 newPlane for z,t: 0 7 uint8 0 127
15:25:21 newPlane for z,t: 0 8 uint8 0 127
15:25:21 newPlane for z,t: 0 9 uint8 0 127
15:25:21 newPlane for z,t: 1 0 uint8 0 127
15:25:21 newPlane for z,t: 1 1 uint8 0 127
15:25:21 newPlane for z,t: 1 2 uint8 0 127
15:25:21 newPlane for z,t: 1 3 uint8 0 127
15:25:21 newPlane for z,t: 1 4 uint8 0 127
15:25:21 newPlane for z,t: 1 5 uint8 0 127
15:25:21 newPlane for z,t: 1 6 uint8 0 127
15:25:21 newPlane for z,t: 1 7 uint8 0 127
15:25:21 newPlane for z,t: 1 8 uint8 0 127
15:25:21 newPlane for z,t: 1 9 uint8 0 127
15:25:21 newPlane for z,t: 2 0 uint8 0 127
15:25:21 newPlane for z,t: 2 1 uint8 0 127
15:25:21 newPlane for z,t: 2 2 uint8 0 127
15:25:21 newPlane for z,t: 2 3 uint8 0 127
15:25:21 newPlane for z,t: 2 4 uint8 0 127
15:25:21 newPlane for z,t: 2 5 uint8 0 127
15:25:21 newPlane for z,t: 2 6 uint8 0 127
15:25:21 newPlane for z,t: 2 7 uint8 0 127
15:25:21 newPlane for z,t: 2 8 uint8 0 127
15:25:21 newPlane for z,t: 2 9 uint8 0 127
15:25:21 newPlane for z,t: 3 0 uint8 0 127
15:25:21 newPlane for z,t: 3 1 uint8 0 127
15:25:21 newPlane for z,t: 3 2 uint8 0 127
15:25:21 newPlane for z,t: 3 3 uint8 0 127
15:25:21 newPlane for z,t: 3 4 uint8 0 127
15:25:21 newPlane for z,t: 3 5 uint8 0 127
15:25:21 newPlane for z,t: 3 6 uint8 0 127
15:25:21 newPlane for z,t: 3 7 uint8 0 127
15:25:21 newPlane for z,t: 3 8 uint8 0 127
15:25:21 newPlane for z,t: 3 9 uint8 0 127
15:25:21 newPlane for z,t: 4 0 uint8 0 127
15:25:21 newPlane for z,t: 4 1 uint8 0 127
15:25:21 newPlane for z,t: 4 2 uint8 0 127
15:25:21 newPlane for z,t: 4 3 uint8 0 127
15:25:21 newPlane for z,t: 4 4 uint8 0 127
15:25:21 newPlane for z,t: 4 5 uint8 0 127
15:25:21 newPlane for z,t: 4 6 uint8 0 127
15:25:21 newPlane for z,t: 4 7 uint8 0 127
15:25:21 newPlane for z,t: 4 8 uint8 0 127
15:25:21 newPlane for z,t: 4 9 uint8 0 127
15:25:21 Deleting, please wait.
15:25:21 Error? False
15:25:21 703 test&sizeT=10&sizeZ=5&sizeC=3.fake
15:25:21 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2026-01/03/15-24-28.497/ test&sizeT=10&sizeZ=5&sizeC=3.fake
15:25:21 1
15:25:21 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2026-01/03/15-24-28.497/ test&sizeT=10&sizeZ=5&sizeC=3.fake
15:25:21 Current group: training_group
15:25:21 Permissions: READ-ONLY (rwr---)
15:25:21 Project 0 Owner: training_user-2 training_user-2
15:25:21 Project 0 Owner: training_user-2 training_user-2
15:25:21 Project 0 Owner: training_user-2 training_user-2
15:25:21 Project 0 Owner: training_user-2 training_user-2
15:25:21 Project 0 Owner: training_user-2 training_user-2
15:25:21 Project 0 Owner: training_user-2 training_user-2
15:25:21 Project 1 Owner: training_user training_user
15:25:21 Project 1 Owner: training_user training_user
15:25:21 Project 1 Owner: training_user training_user
15:25:21 Project 1 Owner: training_user training_user
15:25:21 Project 1 Owner: training_user training_user
15:25:21 Project 1 Owner: training_user training_user
15:25:21 Image: <_ImageWrapper id=703>
15:25:21 Image: <_ImageWrapper id=703> Group: training_group 3
15:25:21 Image: <_ImageWrapper id=703> Channel: 0
15:25:21 Channel: 1
15:25:21 Channel: 2
15:25:21
15:25:21
15:25:21 original_metadata
15:25:21 global_metadata
15:25:21 series_metadata
15:25:21
15:25:21 Plane at zct: 0 0 0
15:25:21 [[ 0 0 0 ... 253 254 255]
15:25:21 [ 0 0 0 ... 253 254 255]
15:25:21 [ 0 0 0 ... 253 254 255]
15:25:21 ...
15:25:21 [ 0 1 2 ... 253 254 255]
15:25:21 [ 0 1 2 ... 253 254 255]
15:25:21 [ 0 1 2 ... 253 254 255]]
15:25:21 shape: (512, 512)
15:25:21 min: 0 max: 255 pixel type: uint8
15:25:21
15:25:21 Z stack of tiles:
15:25:21 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
15:25:21 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
15:25:21 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
15:25:21 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
15:25:21 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
15:25:21
15:25:21 Hyper stack of planes:
15:25:21 plane zct: (2, 0, 0) min: 0 max: 255
15:25:21 plane zct: (2, 0, 1) min: 0 max: 255
15:25:21 plane zct: (2, 0, 2) min: 0 max: 255
15:25:21 plane zct: (2, 0, 3) min: 0 max: 255
15:25:21 plane zct: (2, 0, 4) min: 0 max: 255
15:25:21 plane zct: (2, 0, 5) min: 0 max: 255
15:25:21 plane zct: (2, 0, 6) min: 0 max: 255
15:25:21 plane zct: (2, 0, 7) min: 0 max: 255
15:25:21 plane zct: (2, 0, 8) min: 0 max: 255
15:25:21 plane zct: (2, 0, 9) min: 0 max: 255
15:25:21 plane zct: (2, 1, 0) min: 0 max: 255
15:25:21 plane zct: (2, 1, 1) min: 0 max: 255
15:25:21 plane zct: (2, 1, 2) min: 0 max: 255
15:25:21 plane zct: (2, 1, 3) min: 0 max: 255
15:25:21 plane zct: (2, 1, 4) min: 0 max: 255
15:25:21 plane zct: (2, 1, 5) min: 0 max: 255
15:25:21 plane zct: (2, 1, 6) min: 0 max: 255
15:25:21 plane zct: (2, 1, 7) min: 0 max: 255
15:25:21 plane zct: (2, 1, 8) min: 0 max: 255
15:25:21 plane zct: (2, 1, 9) min: 0 max: 255
15:25:21 plane zct: (2, 2, 0) min: 0 max: 255
15:25:21 plane zct: (2, 2, 1) min: 0 max: 255
15:25:21 plane zct: (2, 2, 2) min: 0 max: 255
15:25:21 plane zct: (2, 2, 3) min: 0 max: 255
15:25:21 plane zct: (2, 2, 4) min: 0 max: 255
15:25:21 plane zct: (2, 2, 5) min: 0 max: 255
15:25:21 plane zct: (2, 2, 6) min: 0 max: 255
15:25:21 plane zct: (2, 2, 7) min: 0 max: 255
15:25:21 plane zct: (2, 2, 8) min: 0 max: 255
15:25:21 plane zct: (2, 2, 9) min: 0 max: 255
15:25:21 plane zct: (3, 0, 0) min: 0 max: 255
15:25:21 plane zct: (3, 0, 1) min: 0 max: 255
15:25:21 plane zct: (3, 0, 2) min: 0 max: 255
15:25:21 plane zct: (3, 0, 3) min: 0 max: 255
15:25:21 plane zct: (3, 0, 4) min: 0 max: 255
15:25:21 plane zct: (3, 0, 5) min: 0 max: 255
15:25:21 plane zct: (3, 0, 6) min: 0 max: 255
15:25:21 plane zct: (3, 0, 7) min: 0 max: 255
15:25:21 plane zct: (3, 0, 8) min: 0 max: 255
15:25:21 plane zct: (3, 0, 9) min: 0 max: 255
15:25:21 plane zct: (3, 1, 0) min: 0 max: 255
15:25:21 plane zct: (3, 1, 1) min: 0 max: 255
15:25:21 plane zct: (3, 1, 2) min: 0 max: 255
15:25:21 plane zct: (3, 1, 3) min: 0 max: 255
15:25:21 plane zct: (3, 1, 4) min: 0 max: 255
15:25:21 plane zct: (3, 1, 5) min: 0 max: 255
15:25:21 plane zct: (3, 1, 6) min: 0 max: 255
15:25:21 plane zct: (3, 1, 7) min: 0 max: 255
15:25:21 plane zct: (3, 1, 8) min: 0 max: 255
15:25:21 plane zct: (3, 1, 9) min: 0 max: 255
15:25:21 plane zct: (3, 2, 0) min: 0 max: 255
15:25:21 plane zct: (3, 2, 1) min: 0 max: 255
15:25:21 plane zct: (3, 2, 2) min: 0 max: 255
15:25:21 plane zct: (3, 2, 3) min: 0 max: 255
15:25:21 plane zct: (3, 2, 4) min: 0 max: 255
15:25:21 plane zct: (3, 2, 5) min: 0 max: 255
15:25:21 plane zct: (3, 2, 6) min: 0 max: 255
15:25:21 plane zct: (3, 2, 7) min: 0 max: 255
15:25:21 plane zct: (3, 2, 8) min: 0 max: 255
15:25:21 plane zct: (3, 2, 9) min: 0 max: 255
15:25:21 plane zct: (4, 0, 0) min: 0 max: 255
15:25:21 plane zct: (4, 0, 1) min: 0 max: 255
15:25:21 plane zct: (4, 0, 2) min: 0 max: 255
15:25:21 plane zct: (4, 0, 3) min: 0 max: 255
15:25:21 plane zct: (4, 0, 4) min: 0 max: 255
15:25:21 plane zct: (4, 0, 5) min: 0 max: 255
15:25:21 plane zct: (4, 0, 6) min: 0 max: 255
15:25:21 plane zct: (4, 0, 7) min: 0 max: 255
15:25:21 plane zct: (4, 0, 8) min: 0 max: 255
15:25:21 plane zct: (4, 0, 9) min: 0 max: 255
15:25:21 plane zct: (4, 1, 0) min: 0 max: 255
15:25:21 plane zct: (4, 1, 1) min: 0 max: 255
15:25:21 plane zct: (4, 1, 2) min: 0 max: 255
15:25:21 plane zct: (4, 1, 3) min: 0 max: 255
15:25:21 plane zct: (4, 1, 4) min: 0 max: 255
15:25:21 plane zct: (4, 1, 5) min: 0 max: 255
15:25:21 plane zct: (4, 1, 6) min: 0 max: 255
15:25:21 plane zct: (4, 1, 7) min: 0 max: 255
15:25:21 plane zct: (4, 1, 8) min: 0 max: 255
15:25:21 plane zct: (4, 1, 9) min: 0 max: 255
15:25:21 plane zct: (4, 2, 0) min: 0 max: 255
15:25:21 plane zct: (4, 2, 1) min: 0 max: 255
15:25:21 plane zct: (4, 2, 2) min: 0 max: 255
15:25:21 plane zct: (4, 2, 3) min: 0 max: 255
15:25:21 plane zct: (4, 2, 4) min: 0 max: 255
15:25:21 plane zct: (4, 2, 5) min: 0 max: 255
15:25:21 plane zct: (4, 2, 6) min: 0 max: 255
15:25:21 plane zct: (4, 2, 7) min: 0 max: 255
15:25:21 plane zct: (4, 2, 8) min: 0 max: 255
15:25:21 plane zct: (4, 2, 9) min: 0 max: 255
15:25:21 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
15:25:22
15:25:22 List Projects:
15:25:22 ==================================================
15:25:22 Project:1 Name:"Project 1" (owner=training_user)
15:25:22 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
15:25:22 Image:1 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
15:25:22 Image:12 Name:"New Image" (owner=training_user)
15:25:22 Image:2 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:7 Name:"New Dataset" (owner=training_user)
15:25:22 Project:7 Name:"Project 1" (owner=training_user)
15:25:22 Dataset:13 Name:"Dataset 1-1" (owner=training_user)
15:25:22 Image:13 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:14 Name:"Dataset 1-2" (owner=training_user)
15:25:22 Image:24 Name:"New Image" (owner=training_user)
15:25:22 Image:25 Name:"newImageFrom15" (owner=training_user)
15:25:22 Image:14 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:19 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:29 Name:"new Name 1" (owner=training_user)
15:25:22 Dataset:30 Name:"new Name 2" (owner=training_user)
15:25:22 Project:51 Name:"Project 1" (owner=training_user)
15:25:22 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
15:25:22 Image:551 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
15:25:22 Image:562 Name:"New Image" (owner=training_user)
15:25:22 Image:563 Name:"newImageFrom553" (owner=training_user)
15:25:22 Image:552 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:57 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:67 Name:"new Name 1" (owner=training_user)
15:25:22 Dataset:68 Name:"new Name 2" (owner=training_user)
15:25:22 Project:101 Name:"Project 1" (owner=training_user)
15:25:22 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
15:25:22 Image:601 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
15:25:22 Image:612 Name:"New Image" (owner=training_user)
15:25:22 Image:613 Name:"newImageFrom603" (owner=training_user)
15:25:22 Image:602 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:107 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:117 Name:"new Name 1" (owner=training_user)
15:25:22 Dataset:118 Name:"new Name 2" (owner=training_user)
15:25:22 Project:151 Name:"Project 1" (owner=training_user)
15:25:22 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
15:25:22 Image:651 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
15:25:22 Image:662 Name:"New Image" (owner=training_user)
15:25:22 Image:663 Name:"newImageFrom653" (owner=training_user)
15:25:22 Image:652 Name:"test.fake" (owner=training_user)
15:25:22 Dataset:157 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:167 Name:"new Name 1" (owner=training_user)
15:25:22 Dataset:168 Name:"new Name 2" (owner=training_user)
15:25:22
15:25:22 List orphaned Datasets:
15:25:22 ==================================================
15:25:22 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
15:25:22 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
15:25:22 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
15:25:22 Dataset:8 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:9 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:10 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:11 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:12 Name:"New Dataset2" (owner=training_user)
15:25:22 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user)
15:25:22 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user)
15:25:22 Dataset:17 Name:"Dataset 0" (owner=training_user-2)
15:25:22 Dataset:20 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:21 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:22 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:23 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:24 Name:"New Dataset2" (owner=training_user)
15:25:22 Dataset:25 Name:"FileAnnotationDelete" (owner=training_user)
15:25:22 Dataset:26 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:27 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:28 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
15:25:22 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
15:25:22 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
15:25:22 Dataset:58 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:59 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:60 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:61 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:62 Name:"New Dataset2" (owner=training_user)
15:25:22 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
15:25:22 Dataset:64 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:65 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:66 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
15:25:22 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
15:25:22 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
15:25:22 Dataset:108 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:109 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:110 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:111 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:112 Name:"New Dataset2" (owner=training_user)
15:25:22 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
15:25:22 Dataset:114 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:115 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:116 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
15:25:22 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
15:25:22 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
15:25:22 Dataset:158 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:159 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:160 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:161 Name:"New Dataset" (owner=training_user)
15:25:22 Dataset:162 Name:"New Dataset2" (owner=training_user)
15:25:22 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
15:25:22 Dataset:164 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:165 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:166 Name:"MyDataset" (owner=training_user)
15:25:22 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user)
15:25:22 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user)
15:25:22 Dataset:205 Name:"Dataset 0" (owner=training_user-2)
15:25:22
15:25:22 Images in Dataset: 202
15:25:22 ==================================================
15:25:22 Image:702 Name:"test.fake" (owner=training_user)
15:25:22
15:25:22 Image:703
15:25:22 ==================================================
15:25:22 test&sizeT=10&sizeZ=5&sizeC=3.fake
15:25:22 X: 512
15:25:22 Y: 512
15:25:22 Z: 5
15:25:22 C: 3
15:25:22 T: 10
15:25:22 Channel: 0 Color: (255, 0, 0)
15:25:22 Lookup table: None
15:25:22 Is reverse intensity? False
15:25:22 Channel: 1 Color: (0, 255, 0)
15:25:22 Lookup table: None
15:25:22 Is reverse intensity? False
15:25:22 Channel: 2 Color: (0, 0, 255)
15:25:22 Lookup table: None
15:25:22 Is reverse intensity? False
15:25:22 Pixel Size X: None
15:25:22
15:25:22 List Screens:
15:25:22 ==================================================
15:25:22 Screen:1 Name:"Screen" (owner=training_user)
15:25:22 Plate:1 Name:"Plate" (owner=training_user)
15:25:22 Plate:2 Name:"Plate Name 0" (owner=training_user)
15:25:22 Screen:4 Name:"Screen" (owner=training_user)
15:25:22 Plate:5 Name:"Plate" (owner=training_user)
15:25:22 Plate:6 Name:"Plate Name 0" (owner=training_user)
15:25:22 Screen:51 Name:"Screen" (owner=training_user)
15:25:22 Plate:51 Name:"Plate" (owner=training_user)
15:25:22 Plate:52 Name:"Plate Name 0" (owner=training_user)
15:25:22 Screen:101 Name:"Screen" (owner=training_user)
15:25:22 Plate:101 Name:"Plate" (owner=training_user)
15:25:22 Plate:102 Name:"Plate Name 0" (owner=training_user)
15:25:22 Screen:151 Name:"Screen" (owner=training_user)
15:25:22 Plate:151 Name:"Plate" (owner=training_user)
15:25:22 Plate:152 Name:"Plate Name 0" (owner=training_user)
15:25:22 Screen:201 Name:"Screen" (owner=training_user)
15:25:22 Plate:201 Name:"Plate" (owner=training_user)
15:25:22 Plate:202 Name:"Plate Name 0" (owner=training_user)
15:25:22 Screen:2 Name:"Screen" (owner=training_user-2)
15:25:22 Screen:5 Name:"Screen" (owner=training_user-2)
15:25:22 Screen:52 Name:"Screen" (owner=training_user-2)
15:25:22 Screen:102 Name:"Screen" (owner=training_user-2)
15:25:22 Screen:152 Name:"Screen" (owner=training_user-2)
15:25:22 Screen:202 Name:"Screen" (owner=training_user-2)
15:25:22
15:25:22 Plate:202
15:25:22 ==================================================
15:25:22
15:25:22 Number of fields: (0, 0)
15:25:22
15:25:22 Grid size: {'rows': 1, 'columns': 3}
15:25:22
15:25:22 Wells in Plate: Plate Name 0
15:25:22 Well: 0 0 Fields: 1
15:25:22 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 704
15:25:22 Well: 0 1 Fields: 1
15:25:22 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 706
15:25:22 Well: 0 2 Fields: 1
15:25:22 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 705
15:25:22 201 <class 'omero.model.MapAnnotationI'>
15:25:30 added by training_user
15:25:30 Image ID: 703
15:25:30 Annotation ID: 201
15:25:30 703
15:25:30 Channel rendering settings:
15:25:30 Name: 0
15:25:30 Color: FF0000
15:25:30 Active: True
15:25:30 Levels: 0.0 - 255.0
15:25:30 Name: 1
15:25:30 Color: 00FF00
15:25:30 Active: True
15:25:30 Levels: 0.0 - 255.0
15:25:30 Name: 2
15:25:30 Color: 0000FF
15:25:30 Active: True
15:25:30 Levels: 0.0 - 255.0
15:25:30 isGreyscaleRenderingModel: False
15:25:30 Default Z/T positions:
15:25:30 Z = 2, T = 0
15:25:30 Rendering Defs on Image:
15:25:30 ID: 303 (owner: training_user training_user)
15:25:30 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
15:25:30 ROI: ID: 202
15:25:30 Shape: id 271 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
15:25:30 Shape: id 272 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
15:25:30 ROI: ID: 203
15:25:30 Shape: id 273 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
15:25:30 ROI: ID: 204
15:25:30 Shape: id 274 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
15:25:30 ROI: ID: 205
15:25:30 Shape: id 275 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
15:25:30 ROI: ID: 206
15:25:30 <class 'omero.model.PolygonI'> Not supported by this code
15:25:30 Shape: id 276 theT 0 theZ 2 textValue test-Polygon
15:25:30 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
15:25:30 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
15:25:30 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
15:25:30 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
15:25:30 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
15:25:30 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
15:25:30 Removing Shape from ROI...
15:25:30 Deleting ROI: 207
15:25:30 Table Columns:
15:25:30 Uid
15:25:30 MyStringColumnInit
15:25:30 Row count: 10
15:25:30
15:25:30 Get All Data for rows: [3, 5, 7]
15:25:30 Data for Column: Uid
15:25:30 1
15:25:30 2
15:25:30 3
15:25:30 4
15:25:30 5
15:25:30 6
15:25:30 7
15:25:30 8
15:25:30 9
15:25:30 10
15:25:30 Data for Column: MyStringColumnInit
15:25:30 one
15:25:30 two
15:25:30 three
15:25:30 four
15:25:30 five
15:25:30 six
15:25:30 seven
15:25:30 eight
15:25:30 nine
15:25:30 ten
15:25:30
15:25:30 Get All Data for rows with slice: [3, 5, 7]
15:25:30 Data for Column: Uid
15:25:30 4
15:25:30 6
15:25:30 8
15:25:30 Data for Column: MyStringColumnInit
15:25:30 four
15:25:30 six
15:25:30 eight
15:25:30
15:25:30 Get Data for cols: [1] and between rows: 3 - 7
15:25:30 Data for Column: MyStringColumnInit
15:25:30 four
15:25:30 five
15:25:30 six
15:25:30 seven
15:25:30
15:25:30 Get Data for cols: [1] and between rows: 3 - 7 with slice
15:25:30 Data for Column: MyStringColumnInit
15:25:30 four
15:25:30 five
15:25:30 six
15:25:30 seven
15:25:30 Query Results for Column: Uid
15:25:30 3
15:25:30 4
15:25:30 5
15:25:30 6
15:25:30 7
15:25:30 8
15:25:30 Query Results for Column: MyStringColumnInit
15:25:30 three
15:25:30 four
15:25:30 five
15:25:30 six
15:25:30 seven
15:25:30 eight
15:25:30 Opened table with row-count: 10
15:25:30 New dataset, Id: 207
15:25:30 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
15:25:30 205 <class 'omero.model.TagAnnotationI'> added by training_user
15:25:30 Tag value: New Tag
15:25:30 206 <class 'omero.model.MapAnnotationI'> added by training_user
15:25:30
15:25:30 Creating an OriginalFile and FileAnnotation
15:25:30 Attaching FileAnnotation to Dataset: File ID: 207 , README.txt Size: 15
15:25:30
15:25:30 Annotations on Dataset: New Dataset
15:25:30 File ID: 702 README.txt Size: 15
15:25:30
15:25:30 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
15:25:30 File downloaded!
15:25:30 107 README.txt
15:25:30 207 README.txt
15:25:30 7 README.txt
15:25:30 57 README.txt
15:25:30 157 README.txt
15:25:30 20 README.txt
15:25:30 Found Annotation with namespace: imperial.training.demo
15:25:30 Plane: 0 0 0
15:25:30 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
15:25:30 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
15:25:30
15:25:30 List Datasets:
15:25:30 ID: 210 Name: MyDataset
15:25:30 ID: 209 Name: MyDataset
15:25:30 ID: 208 Name: MyDataset
15:25:30 ID: 166 Name: MyDataset
15:25:30 ID: 165 Name: MyDataset
15:25:30 ID: 164 Name: MyDataset
15:25:30 ID: 160 Name: MyDataset
15:25:30 ID: 159 Name: MyDataset
15:25:30 ID: 158 Name: MyDataset
15:25:30 ID: 116 Name: MyDataset
15:25:30 ID: 115 Name: MyDataset
15:25:30 ID: 114 Name: MyDataset
15:25:30 ID: 110 Name: MyDataset
15:25:30 ID: 109 Name: MyDataset
15:25:30 ID: 108 Name: MyDataset
15:25:30 ID: 66 Name: MyDataset
15:25:30 ID: 65 Name: MyDataset
15:25:30 ID: 64 Name: MyDataset
15:25:30 ID: 60 Name: MyDataset
15:25:30 ID: 59 Name: MyDataset
15:25:30 ID: 58 Name: MyDataset
15:25:30 ID: 28 Name: MyDataset
15:25:30 ID: 27 Name: MyDataset
15:25:30 ID: 26 Name: MyDataset
15:25:30 ID: 22 Name: MyDataset
15:25:30 ID: 21 Name: MyDataset
15:25:30 ID: 20 Name: MyDataset
15:25:30 ID: 10 Name: MyDataset
15:25:30 ID: 9 Name: MyDataset
15:25:30 ID: 8 Name: MyDataset
15:25:30
15:25:30 List Tags:
15:25:30 ID: 210 Text: MyTag Desc: MyTag 2
15:25:30 ID: 209 Text: MyTag Desc: MyTag 1
15:25:30 ID: 208 Text: MyTag Desc: MyTag 0
15:25:30 ID: 168 Text: MyTag Desc: MyTag 2
15:25:30 ID: 167 Text: MyTag Desc: MyTag 1
15:25:30 ID: 166 Text: MyTag Desc: MyTag 0
15:25:30 ID: 160 Text: MyTag Desc: MyTag 2
15:25:30 ID: 159 Text: MyTag Desc: MyTag 1
15:25:30 ID: 158 Text: MyTag Desc: MyTag 0
15:25:30 ID: 118 Text: MyTag Desc: MyTag 2
15:25:30 ID: 117 Text: MyTag Desc: MyTag 1
15:25:30 ID: 116 Text: MyTag Desc: MyTag 0
15:25:30 ID: 110 Text: MyTag Desc: MyTag 2
15:25:30 ID: 109 Text: MyTag Desc: MyTag 1
15:25:30 ID: 108 Text: MyTag Desc: MyTag 0
15:25:30 ID: 68 Text: MyTag Desc: MyTag 2
15:25:30 ID: 67 Text: MyTag Desc: MyTag 1
15:25:30 ID: 66 Text: MyTag Desc: MyTag 0
15:25:30 ID: 60 Text: MyTag Desc: MyTag 2
15:25:30 ID: 59 Text: MyTag Desc: MyTag 1
15:25:30 ID: 58 Text: MyTag Desc: MyTag 0
15:25:30 ID: 31 Text: MyTag Desc: MyTag 2
15:25:30 ID: 30 Text: MyTag Desc: MyTag 1
15:25:30 ID: 29 Text: MyTag Desc: MyTag 0
15:25:30 ID: 23 Text: MyTag Desc: MyTag 2
15:25:30 ID: 22 Text: MyTag Desc: MyTag 1
15:25:30 ID: 21 Text: MyTag Desc: MyTag 0
15:25:30 ID: 10 Text: MyTag Desc: MyTag 2
15:25:30 ID: 9 Text: MyTag Desc: MyTag 1
15:25:30 ID: 8 Text: MyTag Desc: MyTag 0
15:25:30 New dataset, Id: 211
15:25:30 New dataset 2, Id: 212
15:25:30 test&sizeT=10&sizeZ=5&sizeC=3.fake
15:25:30 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
15:25:30 [[ 0 0 0 ... 102 103 104]
15:25:30 [ 0 0 0 ... 102 103 104]
15:25:30 [ 0 0 0 ... 102 103 104]
15:25:30 ...
15:25:30 [ 5 6 7 ... 102 103 104]
15:25:30 [ 5 6 7 ... 102 103 104]
15:25:30 [ 5 6 7 ... 102 103 104]]
15:25:30 shape: (100, 100)
15:25:30 min: 0 max: 104 pixel type: uint8
15:25:30 Average : 53.9125
15:25:30 Getting data for T, tile: 0 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 1 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 2 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 3 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 4 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 5 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 6 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 7 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 8 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 9 (256, 0, 10, 512)
15:25:30 kymograph_data (512, 100)
15:25:30 Attaching kymograph.png to image
15:25:30 test&sizeT=10&sizeZ=5&sizeC=3.fake
15:25:30 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
15:25:30 [[ 0 0 0 ... 102 103 104]
15:25:30 [ 0 0 0 ... 102 103 104]
15:25:30 [ 0 0 0 ... 102 103 104]
15:25:30 ...
15:25:30 [ 5 6 7 ... 102 103 104]
15:25:30 [ 5 6 7 ... 102 103 104]
15:25:30 [ 5 6 7 ... 102 103 104]]
15:25:30 shape: (100, 100)
15:25:30 min: 0 max: 104 pixel type: uint8
15:25:30 Average : 53.9125
15:25:30 Getting data for T, tile: 0 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 1 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 2 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 3 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 4 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 5 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 6 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 7 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 8 (256, 0, 10, 512)
15:25:30 Getting data for T, tile: 9 (256, 0, 10, 512)
15:25:30 kymograph_data (512, 100)
15:25:30 Attaching kymograph.png to image
15:25:30 No file downloaded. Project not rated.
15:25:30 New image, Id: 712
15:25:30 Starting at: http://nginx/web/api/
15:25:30 CSRF token 5EKjtMSEmqpztLaUplqbUkBYfeaF2zJS
15:25:30 Servers:
15:25:30 -id: 1
15:25:30 name: omero
15:25:30 host: omero
15:25:30 port: 4064
15:25:30 -id: 2
15:25:30 name: testintegration
15:25:30 host: testintegration
15:25:30 port: 14064
15:25:30 eventContext {'sessionId': 616, 'sessionUuid': '9b193deb-1821-43a2-ba8c-28216c21dc30', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
15:25:30 Projects:
15:25:30 2 Project 0
15:25:30 3 Project 0
15:25:30 Created Project: 206 API TEST foo
15:25:30 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 206, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/206/datasets/'}}
15:25:30 !! 01/03/26 15:25:30.390 error: communicator not destroyed during global destruction.+ deactivate
15:25:30 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
15:25:30 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:25:30 + export PATH
15:25:30 + unset _OLD_VIRTUAL_PATH
15:25:30 + '[' -n '' ']'
15:25:30 + hash -r
15:25:30 + '[' -n '' ']'
15:25:30 + unset VIRTUAL_ENV
15:25:30 + unset VIRTUAL_ENV_PROMPT
15:25:30 + '[' '!' '' = nondestructive ']'
15:25:30 + unset -f deactivate
15:25:30 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
15:25:30 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
15:25:32 Note: Some input files use unchecked or unsafe operations.
15:25:32 Note: Recompile with -Xlint:unchecked for details.
15:25:32 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
15:25:32 Error: LinkageError occurred while loading main class training.Setup
15:25:32 java.lang.UnsupportedClassVersionError: training/Setup has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
15:25:32 Build step 'Execute shell' marked build as failure
15:25:32 Finished: FAILURE
