Skipping 129 KB..
Full Log inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:07:14 creating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/schema.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/views.sql
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/test.xml
01:07:14 inflating: openmicroscopy-5.6.3-437-55f26f9220-ice36/update_dependencies.sh
01:07:14 extracting: openmicroscopy-5.6.3-437-55f26f9220-ice36/components/antlib/resources/gitversion.xml
01:07:14 extracting: openmicroscopy-5.6.3-437-55f26f9220-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
01:07:14 + rm -f openmicroscopy-5.6.3-437-55f26f9220-ice36.zip
01:07:14 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-55f26f9220-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
01:07:14 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:07:14 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:07:14 ++ ls OMERO.server-5.6.3-437-55f26f9220-ice36.zip
01:07:14 + ZIP=OMERO.server-5.6.3-437-55f26f9220-ice36.zip
01:07:14 + DIST=OMERO.server-5.6.3-437-55f26f9220-ice36
01:07:14 + unzip -n OMERO.server-5.6.3-437-55f26f9220-ice36.zip
01:07:14 Archive: OMERO.server-5.6.3-437-55f26f9220-ice36.zip
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/blitz/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/grid/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/profiles/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/error/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/grid/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/luts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/luts/janelia/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/luts/ncsa_paledit/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/luts/wcif/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/omero/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/omero/analysis_scripts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/omero/annotation_scripts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/omero/export_scripts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/omero/figure_scripts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/omero/import_scripts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/scripts/omero/util_scripts/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/server/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/share/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/share/licenses/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/misc/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__1/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__10/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__11/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__2/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__3/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__4/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__5/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__6/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__7/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__8/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3A__9/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3__4/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3__5/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3__6/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO3__7/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO4.1__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO4.2__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO4.2__0/t/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO4.3__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO4.4__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO4__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.0__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.1__1/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.2__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.3__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4DEV__1/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4DEV__2/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4DEV__3/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/
01:07:14 creating: OMERO.server-5.6.3-437-55f26f9220-ice36/var/
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/LICENSE.txt
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/backup.cfg
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/blitz/mail-senders.example
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/blitz/mail-server.example
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/build.properties
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/env.bat
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/env.sh
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/hibernate.properties
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/ice.config
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/logback-cli.xml
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/logback-indexing-cli.xml
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/logback-indexing.xml
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/logback.xml
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/mime.types
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/node1.cfg
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/node2.cfg
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/omero.properties
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/profiles/psql
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/rollover.cfg
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/Windows.cfg
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/error/maintainance.html
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/grid/README
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/grid/default.xml
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/grid/templates.xml
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/grid/windefault.xml
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/ice.config
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/internal.cfg
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/master.cfg
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/templates/robot.template
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/etc/testdropbox.config
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/history.rst
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/OMEZarrReader.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/activation.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/aggdesigner-algorithm.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/aircompressor.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/annotations.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/antlr.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/aopalliance.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/apache-client.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/arns.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/auth.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/avatica-core.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/avatica-metrics.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/aws-core.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/aws-query-protocol.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/aws-xml-protocol.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/base.jar
01:07:14 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-all.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-anim.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-awt-util.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-bridge.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-codec.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-constants.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-css.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-dom.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-ext.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-extension.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-gui-util.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-gvt.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-i18n.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-parser.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-rasterizer-ext.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-rasterizer.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-script.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-slideshow.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-squiggle-ext.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-squiggle.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-svg-dom.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-svgbrowser.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-svggen.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-svgpp.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-svgrasterizer.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-swing.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-transcoder.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-ttf2svg.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-util.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/batik-xml.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/btm.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/bufr.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/c3p0.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/calcite-core.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/calcite-linq4j.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/cdm-core.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/checker-qual.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-beanutils.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-codec.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-collections.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-collections4.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-compiler.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-dbcp2.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-io.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-lang.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-lang3.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-logging.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/commons-pool2.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/dom4j.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/ehcache.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/error_prone_annotations.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/esri-geometry-api.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/eventstream.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/failureaccess.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/filters.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/fontbox.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/formats-api.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/formats-bsd.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/formats-gpl.jar
01:07:15 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/lib/client/glacier2.jar
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01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/schema.sql
01:07:17 inflating: OMERO.server-5.6.3-437-55f26f9220-ice36/sql/psql/OMERO5.4__0/views.sql
01:07:17 + rm -f OMERO.server-5.6.3-437-55f26f9220-ice36.zip
01:07:17 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-55f26f9220-ice36 /home/omero/workspace/OMERO-training/OMERO.server
01:07:17 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
01:07:17 ++ deactivate nondestructive
01:07:17 ++ '[' -n '' ']'
01:07:17 ++ '[' -n '' ']'
01:07:17 ++ '[' -n /bin/bash -o -n '' ']'
01:07:17 ++ hash -r
01:07:17 ++ '[' -n '' ']'
01:07:17 ++ unset VIRTUAL_ENV
01:07:17 ++ '[' '!' nondestructive = nondestructive ']'
01:07:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
01:07:17 ++ export VIRTUAL_ENV
01:07:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:07:17 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:07:17 ++ export PATH
01:07:17 ++ '[' -n '' ']'
01:07:17 ++ '[' -z '' ']'
01:07:17 ++ _OLD_VIRTUAL_PS1=
01:07:17 ++ PS1='(.venv3) '
01:07:17 ++ export PS1
01:07:17 ++ '[' -n /bin/bash -o -n '' ']'
01:07:17 ++ hash -r
01:07:17 + for x in *.gz
01:07:17 + pip install omero-dropbox-5.6.3.dev0.tar.gz
01:07:18 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
01:07:18 Installing build dependencies: started
01:07:20 Installing build dependencies: finished with status 'done'
01:07:20 Getting requirements to build wheel: started
01:07:20 Getting requirements to build wheel: finished with status 'done'
01:07:20 Installing backend dependencies: started
01:07:21 Installing backend dependencies: finished with status 'done'
01:07:21 Preparing metadata (pyproject.toml): started
01:07:22 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:22 Collecting omero-py (from omero-dropbox==5.6.3.dev0)
01:07:22 Using cached omero_py-5.19.0-py3-none-any.whl.metadata (6.6 kB)
01:07:22 Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
01:07:22 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
01:07:22 Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
01:07:22 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:07:22 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
01:07:22 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
01:07:22 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
01:07:22 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
01:07:23 Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
01:07:23 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:07:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
01:07:23 Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
01:07:23 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
01:07:23 Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
01:07:23 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
01:07:23 Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:07:23 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
01:07:23 Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:07:23 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
01:07:23 Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
01:07:23 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
01:07:23 Using cached omero_py-5.19.0-py3-none-any.whl (2.8 MB)
01:07:23 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:07:23 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
01:07:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:07:23 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
01:07:23 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
01:07:23 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
01:07:23 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
01:07:23 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
01:07:23 Using cached idna-3.6-py3-none-any.whl (61 kB)
01:07:23 Building wheels for collected packages: omero-dropbox
01:07:23 Building wheel for omero-dropbox (pyproject.toml): started
01:07:23 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:07:23 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=453c877580ffd3450c9080062c0729a9f70988e8477bcaeb12a513026c186a72
01:07:23 Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43
01:07:23 Successfully built omero-dropbox
01:07:24 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
01:07:27 Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.0 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
01:07:27 + for x in *.gz
01:07:27 + pip install omero_marshal-0.9.1.dev0.tar.gz
01:07:27 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:07:27 Installing build dependencies: started
01:07:30 Installing build dependencies: finished with status 'done'
01:07:30 Getting requirements to build wheel: started
01:07:30 Getting requirements to build wheel: finished with status 'done'
01:07:30 Installing backend dependencies: started
01:07:31 Installing backend dependencies: finished with status 'done'
01:07:31 Preparing metadata (pyproject.toml): started
01:07:31 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:31 Building wheels for collected packages: omero_marshal
01:07:31 Building wheel for omero_marshal (pyproject.toml): started
01:07:31 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:07:31 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=5e719d3e8f4d006a0ea2c7f27692f86d5145b914611e838f02bf4a935430da3b
01:07:31 Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
01:07:31 Successfully built omero_marshal
01:07:32 Installing collected packages: omero_marshal
01:07:32 Successfully installed omero_marshal-0.9.1.dev0
01:07:32 + for x in *.gz
01:07:32 + pip install omero-py-5.19.1.dev0.tar.gz
01:07:32 Processing ./omero-py-5.19.1.dev0.tar.gz
01:07:33 Installing build dependencies: started
01:07:34 Installing build dependencies: finished with status 'done'
01:07:34 Getting requirements to build wheel: started
01:07:35 Getting requirements to build wheel: finished with status 'done'
01:07:35 Installing backend dependencies: started
01:07:36 Installing backend dependencies: finished with status 'done'
01:07:36 Preparing metadata (pyproject.toml): started
01:07:36 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.18)
01:07:36 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.4.4)
01:07:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.0.0)
01:07:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (1.26.4)
01:07:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (10.2.0)
01:07:36 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (6.0.1)
01:07:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (3.6.5)
01:07:36 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.31.0)
01:07:36 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.1.dev0) (2.8.2)
01:07:36 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.3.2)
01:07:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (3.6)
01:07:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.1.dev0) (2024.2.2)
01:07:36 Building wheels for collected packages: omero-py
01:07:36 Building wheel for omero-py (pyproject.toml): started
01:07:37 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:07:37 Created wheel for omero-py: filename=omero_py-5.19.1.dev0-py3-none-any.whl size=2781683 sha256=d73507207a92225d8d3fee606d0c52eb36a9c670317d80e69d1ce2a66f0fcd94
01:07:37 Stored in directory: /home/omero/.cache/pip/wheels/0f/f4/17/8aed7bcc59ee680e04154ad77e9d7c203954875e9f0e1940d5
01:07:37 Successfully built omero-py
01:07:37 Installing collected packages: omero-py
01:07:37 Attempting uninstall: omero-py
01:07:37 Found existing installation: omero-py 5.19.0
01:07:37 Uninstalling omero-py-5.19.0:
01:07:38 Successfully uninstalled omero-py-5.19.0
01:07:40 Successfully installed omero-py-5.19.1.dev0
01:07:40 + for x in *.gz
01:07:40 + pip install omero-scripts-5.8.1.dev0.tar.gz
01:07:41 Processing ./omero-scripts-5.8.1.dev0.tar.gz
01:07:41 Installing build dependencies: started
01:07:43 Installing build dependencies: finished with status 'done'
01:07:43 Getting requirements to build wheel: started
01:07:43 Getting requirements to build wheel: finished with status 'done'
01:07:43 Installing backend dependencies: started
01:07:44 Installing backend dependencies: finished with status 'done'
01:07:44 Preparing metadata (pyproject.toml): started
01:07:45 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:45 Building wheels for collected packages: omero-scripts
01:07:45 Building wheel for omero-scripts (pyproject.toml): started
01:07:45 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:07:45 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=17772ea6ad87be575f537c4afb0dfefbb747148e8c45fafc173a1d3dca7acb8d
01:07:45 Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196
01:07:45 Successfully built omero-scripts
01:07:45 Installing collected packages: omero-scripts
01:07:45 Successfully installed omero-scripts-5.8.1.dev0
01:07:45 + for x in *.gz
01:07:45 + pip install omero-web-5.25.1.dev0.tar.gz
01:07:46 Processing ./omero-web-5.25.1.dev0.tar.gz
01:07:46 Installing build dependencies: started
01:07:49 Installing build dependencies: finished with status 'done'
01:07:49 Getting requirements to build wheel: started
01:07:49 Getting requirements to build wheel: finished with status 'done'
01:07:49 Installing backend dependencies: started
01:07:51 Installing backend dependencies: finished with status 'done'
01:07:51 Preparing metadata (pyproject.toml): started
01:07:51 Preparing metadata (pyproject.toml): finished with status 'done'
01:07:51 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.1.dev0)
01:07:51 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
01:07:51 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:07:51 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
01:07:51 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
01:07:51 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
01:07:51 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:07:51 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
01:07:51 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:07:52 Collecting django-csp (from omero-web==5.25.1.dev0)
01:07:52 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:07:52 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
01:07:52 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
01:07:52 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
01:07:52 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
01:07:52 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
01:07:52 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
01:07:52 Collecting pytz (from omero-web==5.25.1.dev0)
01:07:52 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
01:07:52 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
01:07:52 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
01:07:52 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:07:52 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:07:52 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:07:52 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
01:07:52 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
01:07:52 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
01:07:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
01:07:52 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
01:07:52 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
01:07:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
01:07:52 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
01:07:52 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
01:07:52 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
01:07:52 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
01:07:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
01:07:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
01:07:52 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:07:52 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:07:52 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:07:52 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
01:07:52 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
01:07:52 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
01:07:52 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:07:52 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
01:07:52 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:07:52 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
01:07:53 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
01:07:53 Building wheels for collected packages: omero-web
01:07:53 Building wheel for omero-web (pyproject.toml): started
01:07:54 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:07:54 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=92c5c461a87e30a114640bed52b8dea2ef4b3504bcdf01e5e5dbe0239d2c59bb
01:07:54 Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7
01:07:54 Successfully built omero-web
01:07:54 Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
01:07:57 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
01:07:58 + cd /home/omero/workspace/OMERO-training/OMERO.server
01:07:58 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
01:07:58 + HOSTNAME=d6309de3f85a
01:07:58 + PORT=4064
01:07:58 + WEBHOST=http://nginx/web
01:07:58 + SERVER_NAME=omero
01:07:58 + ROOT_PASSWORD=omero
01:07:58 + GROUP_NAME=training_group
01:07:58 + GROUP_NAME_2=training_group-2
01:07:58 + USER_NAME=training_user
01:07:58 + USER_NAME_2=training_user-2
01:07:58 + LIGHTADMIN_USER_NAME=ladmin_user
01:07:58 + USER_PASSWORD=ome
01:07:58 + CONFIG_FILENAME=training_ice.config
01:07:58 + omero login root@d6309de3f85a:4064 -w omero
01:08:00 Created session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:00 + omero group add training_group --type read-only --ignore-existing
01:08:01 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:01 Group exists: training_group (id=3)
01:08:01 + omero group add training_group-2 --type read-only --ignore-existing
01:08:02 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:02 Group exists: training_group-2 (id=4)
01:08:02 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
01:08:03 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:03 User exists: training_user (id=2)
01:08:03 + omero user joingroup --name training_user --group-name training_group training_group-2
01:08:04 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:04 2 is already in group 3
01:08:04 2 is already in group 4
01:08:05 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
01:08:05 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:05 User exists: training_user-2 (id=3)
01:08:06 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
01:08:07 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:07 3 is already in group 3
01:08:07 3 is already in group 4
01:08:07 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
01:08:08 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:08 User exists: ladmin_user (id=4)
01:08:08 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
01:08:09 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:09 4 is already in group 3
01:08:09 4 is already in group 4
01:08:09 ++ omero user info ladmin_user --style plain
01:08:09 ++ cut -d, -f1
01:08:10 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:10 + id=4
01:08:10 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
01:08:11 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
01:08:11 Experimenter:4
01:08:11 + omero logout
01:08:12 + touch test.fake
01:08:12 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group
01:08:13 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:14 + nProjects=1
01:08:14 + nDatasets=2
01:08:14 + echo 'Creating projects and datasets'
01:08:14 Creating projects and datasets
01:08:14 + (( i=1 ))
01:08:14 + (( i<=1 ))
01:08:14 ++ omero obj new Project 'name=Project 1'
01:08:14 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:15 + project=Project:401
01:08:15 + (( j=1 ))
01:08:15 + (( j<=2 ))
01:08:15 ++ omero obj new Dataset 'name=Dataset 1-1'
01:08:16 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:16 + dataset=Dataset:451
01:08:16 + omero obj new ProjectDatasetLink parent=Project:401 child=Dataset:451
01:08:17 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:17 ProjectDatasetLink:401
01:08:17 + echo 'Importing image into dataset'
01:08:17 Importing image into dataset
01:08:17 + omero import -d Dataset:451 test.fake --debug ERROR
01:08:18 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:20 2024-03-25 01:08:20,091 713 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:08:20 2024-03-25 01:08:20,110 732 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fa6f76cc8567a489db689a2f414b1e2d4a68dd52 date: 25 March 2024
01:08:30 Image:2651
01:08:30 Other imported objects:
01:08:30 Fileset:2001
01:08:30
01:08:30 ==> Summary
01:08:30 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:08.132
01:08:31 + (( j++ ))
01:08:31 + (( j<=2 ))
01:08:31 ++ omero obj new Dataset 'name=Dataset 1-2'
01:08:33 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:33 + dataset=Dataset:452
01:08:33 + omero obj new ProjectDatasetLink parent=Project:401 child=Dataset:452
01:08:34 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:34 ProjectDatasetLink:402
01:08:35 + echo 'Importing image into dataset'
01:08:35 Importing image into dataset
01:08:35 + omero import -d Dataset:452 test.fake --debug ERROR
01:08:36 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:37 2024-03-25 01:08:37,264 333 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:08:37 2024-03-25 01:08:37,289 358 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fa6f76cc8567a489db689a2f414b1e2d4a68dd52 date: 25 March 2024
01:08:41 Image:2652
01:08:41 Other imported objects:
01:08:41 Fileset:2002
01:08:41
01:08:41 ==> Summary
01:08:41 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.974
01:08:41 + (( j++ ))
01:08:41 + (( j<=2 ))
01:08:41 + (( i++ ))
01:08:41 + (( i<=1 ))
01:08:41 + (( j=1 ))
01:08:41 + (( j<=2 ))
01:08:41 + omero obj new Dataset 'name=Orphaned dataset 1'
01:08:42 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:42 Dataset:453
01:08:42 + (( j++ ))
01:08:42 + (( j<=2 ))
01:08:42 + omero obj new Dataset 'name=Orphaned dataset 2'
01:08:43 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:43 Dataset:454
01:08:44 + (( j++ ))
01:08:44 + (( j<=2 ))
01:08:44 + echo 'Importing image file'
01:08:44 Importing image file
01:08:44 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:08:44 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:08:52 ++ sed -n -e 's/^Image://p' image_import.log
01:08:52 + imageid=2653
01:08:52 ++ omero obj new MapAnnotation
01:08:53 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:53 + MAP=MapAnnotation:1501
01:08:53 + omero obj map-set MapAnnotation:1501 mapValue testkey testvalue
01:08:54 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:55 MapAnnotation:1501
01:08:55 + omero obj new ImageAnnotationLink parent=Image:2653 child=MapAnnotation:1501
01:08:56 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:57 ImageAnnotationLink:501
01:08:57 ++ omero obj new Screen name=Screen
01:08:58 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:08:59 + screen=Screen:301
01:08:59 ++ omero obj new Plate name=Plate
01:09:00 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:00 + plate=Plate:401
01:09:00 + omero obj new ScreenPlateLink parent=Screen:301 child=Plate:401
01:09:01 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:01 ScreenPlateLink:301
01:09:02 + echo 'Importing SPW file'
01:09:02 Importing SPW file
01:09:02 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:09:02 + omero import -r Screen:301 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:09:14 ++ sed -n -e 's/^Plate://p' plate_import.log
01:09:14 + plateid=402
01:09:14 + omero logout
01:09:15 + omero login training_user-2@d6309de3f85a:4064 -w ome -g training_group
01:09:17 Created session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:18 + omero obj new Project 'name=Project 0'
01:09:19 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:19 Project:402
01:09:19 + omero obj new Dataset 'name=Dataset 0'
01:09:21 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:21 Dataset:455
01:09:21 + omero import test.fake --debug ERROR
01:09:22 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:24 2024-03-25 01:09:24,315 765 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:09:24 2024-03-25 01:09:24,351 801 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fa6f76cc8567a489db689a2f414b1e2d4a68dd52 date: 25 March 2024
01:09:28 Image:2657
01:09:28 Other imported objects:
01:09:28 Fileset:2005
01:09:28
01:09:28 ==> Summary
01:09:28 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.810
01:09:29 + omero obj new Screen name=Screen
01:09:30 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:30 Screen:302
01:09:30 + omero obj new Plate name=Plate
01:09:31 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:09:31 Plate:403
01:09:32 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group-2
01:09:33 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:09:33 + omero obj new Project 'name=Project 0'
01:09:34 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:09:34 Project:403
01:09:35 + omero obj new Dataset 'name=Dataset 0'
01:09:36 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:09:36 Dataset:456
01:09:36 + omero import test.fake --debug ERROR
01:09:37 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:09:39 2024-03-25 01:09:39,384 730 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:09:39 2024-03-25 01:09:39,405 751 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: fa6f76cc8567a489db689a2f414b1e2d4a68dd52 date: 25 March 2024
01:09:43 Image:2658
01:09:43 Other imported objects:
01:09:43 Fileset:2006
01:09:43
01:09:43 ==> Summary
01:09:43 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.878
01:09:43 + omero obj new Screen name=Screen
01:09:44 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:09:44 Screen:303
01:09:44 + omero obj new Plate name=Plate
01:09:46 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:09:46 Plate:404
01:09:46 + omero logout
01:09:47 + echo omero.host=d6309de3f85a
01:09:47 + echo omero.port=4064
01:09:47 + echo omero.webhost=http://nginx/web
01:09:47 + echo omero.servername=omero
01:09:47 + echo omero.user=training_user
01:09:47 + echo omero.pass=ome
01:09:47 + echo omero.group=training_group
01:09:47 + echo omero.projectid=401
01:09:47 + echo omero.datasetid=452
01:09:47 + echo omero.imageid=2653
01:09:47 + echo omero.plateid=402
01:09:47 + echo omero.screenid=301
01:09:47 + echo omero.group2=training_group-2
01:09:47 + echo omero.ladmin=ladmin_user
01:09:47 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:09:47 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:09:47 + omero sessions clear
01:09:48 1 session(s) cleared
01:09:48 !! 03/25/24 01:09:48.872 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:09:48 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:09:48 + pip install --upgrade requests
01:09:49 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
01:09:49 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
01:09:49 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6)
01:09:49 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
01:09:49 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
01:09:50 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:10:08 Running training suite
01:10:08 created 20 shapes
01:10:08 retrieved 20 shapes in 4 batches
01:10:08 Current user:
01:10:08 ID: 2
01:10:08 Username: training_user
01:10:08 Full Name: training_user training_user
01:10:08 Is Admin: False
01:10:08 []
01:10:08 Member of:
01:10:08 ID: 3 Name: training_group
01:10:08 ID: 4 Name: training_group-2
01:10:08 Current group: training_group
01:10:08 Group owners:
01:10:08 Group members:
01:10:08 ID: 2 UserName: training_user Name: training_user training_user
01:10:08 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:10:08 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:10:08 Owner of:
01:10:08 Admins:
01:10:08 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:10:08 ID: 0 UserName: root Name: root root
01:10:08 Created new Image:2659 Name:"numpy image"
01:10:08 newPlane for z,t: 0 0 uint8 0 127
01:10:08 newPlane for z,t: 0 1 uint8 0 127
01:10:08 newPlane for z,t: 0 2 uint8 0 127
01:10:08 newPlane for z,t: 0 3 uint8 0 127
01:10:08 newPlane for z,t: 0 4 uint8 0 127
01:10:08 newPlane for z,t: 0 5 uint8 0 127
01:10:08 newPlane for z,t: 0 6 uint8 0 127
01:10:08 newPlane for z,t: 0 7 uint8 0 127
01:10:08 newPlane for z,t: 0 8 uint8 0 127
01:10:08 newPlane for z,t: 0 9 uint8 0 127
01:10:08 newPlane for z,t: 1 0 uint8 0 127
01:10:08 newPlane for z,t: 1 1 uint8 0 127
01:10:08 newPlane for z,t: 1 2 uint8 0 127
01:10:08 newPlane for z,t: 1 3 uint8 0 127
01:10:08 newPlane for z,t: 1 4 uint8 0 127
01:10:08 newPlane for z,t: 1 5 uint8 0 127
01:10:08 newPlane for z,t: 1 6 uint8 0 127
01:10:08 newPlane for z,t: 1 7 uint8 0 127
01:10:08 newPlane for z,t: 1 8 uint8 0 127
01:10:08 newPlane for z,t: 1 9 uint8 0 127
01:10:08 newPlane for z,t: 2 0 uint8 0 127
01:10:08 newPlane for z,t: 2 1 uint8 0 127
01:10:08 newPlane for z,t: 2 2 uint8 0 127
01:10:08 newPlane for z,t: 2 3 uint8 0 127
01:10:08 newPlane for z,t: 2 4 uint8 0 127
01:10:08 newPlane for z,t: 2 5 uint8 0 127
01:10:08 newPlane for z,t: 2 6 uint8 0 127
01:10:08 newPlane for z,t: 2 7 uint8 0 127
01:10:08 newPlane for z,t: 2 8 uint8 0 127
01:10:08 newPlane for z,t: 2 9 uint8 0 127
01:10:08 newPlane for z,t: 3 0 uint8 0 127
01:10:08 newPlane for z,t: 3 1 uint8 0 127
01:10:08 newPlane for z,t: 3 2 uint8 0 127
01:10:08 newPlane for z,t: 3 3 uint8 0 127
01:10:08 newPlane for z,t: 3 4 uint8 0 127
01:10:08 newPlane for z,t: 3 5 uint8 0 127
01:10:08 newPlane for z,t: 3 6 uint8 0 127
01:10:08 newPlane for z,t: 3 7 uint8 0 127
01:10:08 newPlane for z,t: 3 8 uint8 0 127
01:10:08 newPlane for z,t: 3 9 uint8 0 127
01:10:08 newPlane for z,t: 4 0 uint8 0 127
01:10:08 newPlane for z,t: 4 1 uint8 0 127
01:10:08 newPlane for z,t: 4 2 uint8 0 127
01:10:08 newPlane for z,t: 4 3 uint8 0 127
01:10:08 newPlane for z,t: 4 4 uint8 0 127
01:10:08 newPlane for z,t: 4 5 uint8 0 127
01:10:08 newPlane for z,t: 4 6 uint8 0 127
01:10:08 newPlane for z,t: 4 7 uint8 0 127
01:10:08 newPlane for z,t: 4 8 uint8 0 127
01:10:08 newPlane for z,t: 4 9 uint8 0 127
01:10:08 Deleting, please wait.
01:10:08 Error? False
01:10:08 2653 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:10:08 training_user_2/Blitz-0-Ice.ThreadPool.Server-9/2024-03/25/01-08-48.559/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:10:08 1
01:10:08 training_user_2/Blitz-0-Ice.ThreadPool.Server-9/2024-03/25/01-08-48.559/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:10:08 Current group: training_group
01:10:08 Permissions: READ-ONLY (rwr---)
01:10:08 Project 1 Owner: training_user training_user
01:10:08 Project 1 Owner: training_user training_user
01:10:08 Project 1 Owner: training_user training_user
01:10:08 Project 1 Owner: training_user training_user
01:10:08 Project 1 Owner: training_user training_user
01:10:08 Project 1 Owner: training_user training_user
01:10:08 Project 1 Owner: training_user training_user
01:10:08 Project 0 Owner: training_user-2 training_user-2
01:10:08 Project 0 Owner: training_user-2 training_user-2
01:10:08 Project 0 Owner: training_user-2 training_user-2
01:10:08 Project 0 Owner: training_user-2 training_user-2
01:10:08 Project 0 Owner: training_user-2 training_user-2
01:10:08 Project 0 Owner: training_user-2 training_user-2
01:10:08 Project 0 Owner: training_user-2 training_user-2
01:10:08 Image: <_ImageWrapper id=2653>
01:10:08 Image: <_ImageWrapper id=2653> Group: training_group 3
01:10:08 Image: <_ImageWrapper id=2653> Channel: 0
01:10:08 Channel: 1
01:10:08 Channel: 2
01:10:08
01:10:08
01:10:08 original_metadata
01:10:08 global_metadata
01:10:08 series_metadata
01:10:08
01:10:08 Plane at zct: 0 0 0
01:10:08 [[ 0 0 0 ... 253 254 255]
01:10:08 [ 0 0 0 ... 253 254 255]
01:10:08 [ 0 0 0 ... 253 254 255]
01:10:08 ...
01:10:08 [ 0 1 2 ... 253 254 255]
01:10:08 [ 0 1 2 ... 253 254 255]
01:10:08 [ 0 1 2 ... 253 254 255]]
01:10:08 shape: (512, 512)
01:10:08 min: 0 max: 255 pixel type: uint8
01:10:08
01:10:08 Z stack of tiles:
01:10:08 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:10:08 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:10:08 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:10:08 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:10:08 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:10:08
01:10:08 Hyper stack of planes:
01:10:08 plane zct: (2, 0, 0) min: 0 max: 255
01:10:08 plane zct: (2, 0, 1) min: 0 max: 255
01:10:08 plane zct: (2, 0, 2) min: 0 max: 255
01:10:08 plane zct: (2, 0, 3) min: 0 max: 255
01:10:08 plane zct: (2, 0, 4) min: 0 max: 255
01:10:08 plane zct: (2, 0, 5) min: 0 max: 255
01:10:08 plane zct: (2, 0, 6) min: 0 max: 255
01:10:08 plane zct: (2, 0, 7) min: 0 max: 255
01:10:08 plane zct: (2, 0, 8) min: 0 max: 255
01:10:08 plane zct: (2, 0, 9) min: 0 max: 255
01:10:08 plane zct: (2, 1, 0) min: 0 max: 255
01:10:08 plane zct: (2, 1, 1) min: 0 max: 255
01:10:08 plane zct: (2, 1, 2) min: 0 max: 255
01:10:08 plane zct: (2, 1, 3) min: 0 max: 255
01:10:08 plane zct: (2, 1, 4) min: 0 max: 255
01:10:08 plane zct: (2, 1, 5) min: 0 max: 255
01:10:08 plane zct: (2, 1, 6) min: 0 max: 255
01:10:08 plane zct: (2, 1, 7) min: 0 max: 255
01:10:08 plane zct: (2, 1, 8) min: 0 max: 255
01:10:08 plane zct: (2, 1, 9) min: 0 max: 255
01:10:08 plane zct: (2, 2, 0) min: 0 max: 255
01:10:08 plane zct: (2, 2, 1) min: 0 max: 255
01:10:08 plane zct: (2, 2, 2) min: 0 max: 255
01:10:08 plane zct: (2, 2, 3) min: 0 max: 255
01:10:08 plane zct: (2, 2, 4) min: 0 max: 255
01:10:08 plane zct: (2, 2, 5) min: 0 max: 255
01:10:08 plane zct: (2, 2, 6) min: 0 max: 255
01:10:08 plane zct: (2, 2, 7) min: 0 max: 255
01:10:08 plane zct: (2, 2, 8) min: 0 max: 255
01:10:08 plane zct: (2, 2, 9) min: 0 max: 255
01:10:08 plane zct: (3, 0, 0) min: 0 max: 255
01:10:08 plane zct: (3, 0, 1) min: 0 max: 255
01:10:08 plane zct: (3, 0, 2) min: 0 max: 255
01:10:08 plane zct: (3, 0, 3) min: 0 max: 255
01:10:08 plane zct: (3, 0, 4) min: 0 max: 255
01:10:08 plane zct: (3, 0, 5) min: 0 max: 255
01:10:08 plane zct: (3, 0, 6) min: 0 max: 255
01:10:08 plane zct: (3, 0, 7) min: 0 max: 255
01:10:08 plane zct: (3, 0, 8) min: 0 max: 255
01:10:08 plane zct: (3, 0, 9) min: 0 max: 255
01:10:08 plane zct: (3, 1, 0) min: 0 max: 255
01:10:08 plane zct: (3, 1, 1) min: 0 max: 255
01:10:08 plane zct: (3, 1, 2) min: 0 max: 255
01:10:08 plane zct: (3, 1, 3) min: 0 max: 255
01:10:08 plane zct: (3, 1, 4) min: 0 max: 255
01:10:08 plane zct: (3, 1, 5) min: 0 max: 255
01:10:08 plane zct: (3, 1, 6) min: 0 max: 255
01:10:08 plane zct: (3, 1, 7) min: 0 max: 255
01:10:08 plane zct: (3, 1, 8) min: 0 max: 255
01:10:08 plane zct: (3, 1, 9) min: 0 max: 255
01:10:08 plane zct: (3, 2, 0) min: 0 max: 255
01:10:08 plane zct: (3, 2, 1) min: 0 max: 255
01:10:08 plane zct: (3, 2, 2) min: 0 max: 255
01:10:08 plane zct: (3, 2, 3) min: 0 max: 255
01:10:08 plane zct: (3, 2, 4) min: 0 max: 255
01:10:08 plane zct: (3, 2, 5) min: 0 max: 255
01:10:08 plane zct: (3, 2, 6) min: 0 max: 255
01:10:08 plane zct: (3, 2, 7) min: 0 max: 255
01:10:08 plane zct: (3, 2, 8) min: 0 max: 255
01:10:08 plane zct: (3, 2, 9) min: 0 max: 255
01:10:08 plane zct: (4, 0, 0) min: 0 max: 255
01:10:08 plane zct: (4, 0, 1) min: 0 max: 255
01:10:08 plane zct: (4, 0, 2) min: 0 max: 255
01:10:08 plane zct: (4, 0, 3) min: 0 max: 255
01:10:08 plane zct: (4, 0, 4) min: 0 max: 255
01:10:08 plane zct: (4, 0, 5) min: 0 max: 255
01:10:08 plane zct: (4, 0, 6) min: 0 max: 255
01:10:08 plane zct: (4, 0, 7) min: 0 max: 255
01:10:08 plane zct: (4, 0, 8) min: 0 max: 255
01:10:08 plane zct: (4, 0, 9) min: 0 max: 255
01:10:08 plane zct: (4, 1, 0) min: 0 max: 255
01:10:08 plane zct: (4, 1, 1) min: 0 max: 255
01:10:08 plane zct: (4, 1, 2) min: 0 max: 255
01:10:08 plane zct: (4, 1, 3) min: 0 max: 255
01:10:08 plane zct: (4, 1, 4) min: 0 max: 255
01:10:08 plane zct: (4, 1, 5) min: 0 max: 255
01:10:08 plane zct: (4, 1, 6) min: 0 max: 255
01:10:08 plane zct: (4, 1, 7) min: 0 max: 255
01:10:08 plane zct: (4, 1, 8) min: 0 max: 255
01:10:08 plane zct: (4, 1, 9) min: 0 max: 255
01:10:08 plane zct: (4, 2, 0) min: 0 max: 255
01:10:08 plane zct: (4, 2, 1) min: 0 max: 255
01:10:08 plane zct: (4, 2, 2) min: 0 max: 255
01:10:08 plane zct: (4, 2, 3) min: 0 max: 255
01:10:08 plane zct: (4, 2, 4) min: 0 max: 255
01:10:08 plane zct: (4, 2, 5) min: 0 max: 255
01:10:08 plane zct: (4, 2, 6) min: 0 max: 255
01:10:08 plane zct: (4, 2, 7) min: 0 max: 255
01:10:08 plane zct: (4, 2, 8) min: 0 max: 255
01:10:08 plane zct: (4, 2, 9) min: 0 max: 255
01:10:10 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
01:10:10
01:10:10 List Projects:
01:10:10 ==================================================
01:10:10 Project:1 Name:"Project 1" (owner=training_user)
01:10:10 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:10:10 Image:1 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:10:10 Image:12 Name:"New Image" (owner=training_user)
01:10:10 Image:13 Name:"newImageFrom3" (owner=training_user)
01:10:10 Image:2 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:7 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:17 Name:"new Name 1" (owner=training_user)
01:10:10 Dataset:18 Name:"new Name 2" (owner=training_user)
01:10:10 Project:51 Name:"Project 1" (owner=training_user)
01:10:10 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
01:10:10 Image:51 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
01:10:10 Image:62 Name:"New Image" (owner=training_user)
01:10:10 Image:63 Name:"newImageFrom53" (owner=training_user)
01:10:10 Image:52 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:57 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:67 Name:"new Name 1" (owner=training_user)
01:10:10 Dataset:68 Name:"new Name 2" (owner=training_user)
01:10:10 Project:101 Name:"Project 1" (owner=training_user)
01:10:10 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
01:10:10 Image:101 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
01:10:10 Image:112 Name:"New Image" (owner=training_user)
01:10:10 Image:113 Name:"newImageFrom103" (owner=training_user)
01:10:10 Image:102 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:107 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:117 Name:"new Name 1" (owner=training_user)
01:10:10 Dataset:118 Name:"new Name 2" (owner=training_user)
01:10:10 Project:151 Name:"Project 1" (owner=training_user)
01:10:10 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
01:10:10 Image:151 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
01:10:10 Image:162 Name:"New Image" (owner=training_user)
01:10:10 Image:163 Name:"newImageFrom153" (owner=training_user)
01:10:10 Image:152 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:157 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:167 Name:"new Name 1" (owner=training_user)
01:10:10 Dataset:168 Name:"new Name 2" (owner=training_user)
01:10:10 Project:301 Name:"Project 1" (owner=training_user)
01:10:10 Dataset:351 Name:"Dataset 1-1" (owner=training_user)
01:10:10 Image:2551 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:352 Name:"Dataset 1-2" (owner=training_user)
01:10:10 Image:2562 Name:"New Image" (owner=training_user)
01:10:10 Image:2563 Name:"newImageFrom2553" (owner=training_user)
01:10:10 Image:2552 Name:"test.fake" (owner=training_user)
01:10:10 Dataset:357 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:367 Name:"new Name 1" (owner=training_user)
01:10:10 Dataset:368 Name:"new Name 2" (owner=training_user)
01:10:10
01:10:10 List orphaned Datasets:
01:10:10 ==================================================
01:10:10 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:10:10 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:10:10 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:10:10 Dataset:8 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:9 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:10 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:11 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:12 Name:"New Dataset2" (owner=training_user)
01:10:10 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
01:10:10 Dataset:14 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:15 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:16 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
01:10:10 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
01:10:10 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
01:10:10 Dataset:58 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:59 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:60 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:61 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:62 Name:"New Dataset2" (owner=training_user)
01:10:10 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
01:10:10 Dataset:64 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:65 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:66 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
01:10:10 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
01:10:10 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
01:10:10 Dataset:108 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:109 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:110 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:111 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:112 Name:"New Dataset2" (owner=training_user)
01:10:10 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
01:10:10 Dataset:114 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:115 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:116 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
01:10:10 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
01:10:10 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
01:10:10 Dataset:158 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:159 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:160 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:161 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:162 Name:"New Dataset2" (owner=training_user)
01:10:10 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
01:10:10 Dataset:164 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:165 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:166 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:353 Name:"Orphaned dataset 1" (owner=training_user)
01:10:10 Dataset:354 Name:"Orphaned dataset 2" (owner=training_user)
01:10:10 Dataset:355 Name:"Dataset 0" (owner=training_user-2)
01:10:10 Dataset:358 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:359 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:360 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:361 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:362 Name:"New Dataset2" (owner=training_user)
01:10:10 Dataset:363 Name:"FileAnnotationDelete" (owner=training_user)
01:10:10 Dataset:364 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:365 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:366 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:403 Name:"Orphaned dataset 1" (owner=training_user)
01:10:10 Dataset:404 Name:"Orphaned dataset 2" (owner=training_user)
01:10:10 Dataset:405 Name:"Dataset 0" (owner=training_user-2)
01:10:10 Dataset:408 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:409 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:410 Name:"MyDataset" (owner=training_user)
01:10:10 Dataset:411 Name:"New Dataset" (owner=training_user)
01:10:10 Dataset:412 Name:"New Dataset2" (owner=training_user)
01:10:13 <string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
01:10:21 Dataset:413 Name:"FileAnnotationDelete" (owner=training_user)
01:10:21 Dataset:414 Name:"MyDataset" (owner=training_user)
01:10:21 Dataset:415 Name:"MyDataset" (owner=training_user)
01:10:21 Dataset:416 Name:"MyDataset" (owner=training_user)
01:10:21 Dataset:453 Name:"Orphaned dataset 1" (owner=training_user)
01:10:21 Dataset:454 Name:"Orphaned dataset 2" (owner=training_user)
01:10:21 Dataset:455 Name:"Dataset 0" (owner=training_user-2)
01:10:21
01:10:21 Images in Dataset: 452
01:10:21 ==================================================
01:10:21 Image:2652 Name:"test.fake" (owner=training_user)
01:10:21
01:10:21 Image:2653
01:10:21 ==================================================
01:10:21 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:10:21 X: 512
01:10:21 Y: 512
01:10:21 Z: 5
01:10:21 C: 3
01:10:21 T: 10
01:10:21 Channel: 0 Color: (255, 0, 0)
01:10:21 Lookup table: None
01:10:21 Is reverse intensity? False
01:10:21 Channel: 1 Color: (0, 255, 0)
01:10:21 Lookup table: None
01:10:21 Is reverse intensity? False
01:10:21 Channel: 2 Color: (0, 0, 255)
01:10:21 Lookup table: None
01:10:21 Is reverse intensity? False
01:10:21 Pixel Size X: None
01:10:21
01:10:21 List Screens:
01:10:21 ==================================================
01:10:21 Screen:301 Name:"Screen" (owner=training_user)
01:10:21 Plate:401 Name:"Plate" (owner=training_user)
01:10:21 Plate:402 Name:"Plate Name 0" (owner=training_user)
01:10:21 Screen:251 Name:"Screen" (owner=training_user)
01:10:21 Plate:351 Name:"Plate" (owner=training_user)
01:10:21 Plate:352 Name:"Plate Name 0" (owner=training_user)
01:10:21 Screen:201 Name:"Screen" (owner=training_user)
01:10:21 Plate:301 Name:"Plate" (owner=training_user)
01:10:21 Plate:302 Name:"Plate Name 0" (owner=training_user)
01:10:21 Screen:151 Name:"Screen" (owner=training_user)
01:10:21 Plate:151 Name:"Plate" (owner=training_user)
01:10:21 Plate:152 Name:"Plate Name 0" (owner=training_user)
01:10:21 Screen:101 Name:"Screen" (owner=training_user)
01:10:21 Plate:101 Name:"Plate" (owner=training_user)
01:10:21 Plate:102 Name:"Plate Name 0" (owner=training_user)
01:10:21 Screen:51 Name:"Screen" (owner=training_user)
01:10:21 Plate:51 Name:"Plate" (owner=training_user)
01:10:21 Plate:52 Name:"Plate Name 0" (owner=training_user)
01:10:21 Screen:1 Name:"Screen" (owner=training_user)
01:10:21 Plate:1 Name:"Plate" (owner=training_user)
01:10:21 Plate:2 Name:"Plate Name 0" (owner=training_user)
01:10:21 Screen:302 Name:"Screen" (owner=training_user-2)
01:10:21 Screen:252 Name:"Screen" (owner=training_user-2)
01:10:21 Screen:202 Name:"Screen" (owner=training_user-2)
01:10:21 Screen:152 Name:"Screen" (owner=training_user-2)
01:10:21 Screen:102 Name:"Screen" (owner=training_user-2)
01:10:21 Screen:52 Name:"Screen" (owner=training_user-2)
01:10:21 Screen:2 Name:"Screen" (owner=training_user-2)
01:10:21
01:10:21 Plate:402
01:10:21 ==================================================
01:10:21
01:10:21 Number of fields: (0, 0)
01:10:21
01:10:21 Grid size: {'rows': 1, 'columns': 3}
01:10:21
01:10:21 Wells in Plate: Plate Name 0
01:10:21 Well: 0 1 Fields: 1
01:10:21 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 2655
01:10:21 Well: 0 0 Fields: 1
01:10:21 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 2654
01:10:21 Well: 0 2 Fields: 1
01:10:21 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 2656
01:10:21 1501 <class 'omero.model.MapAnnotationI'>
01:10:21 added by training_user
01:10:21 Image ID: 2653
01:10:21 Annotation ID: 1501
01:10:21 2653
01:10:21 Channel rendering settings:
01:10:21 Name: 0
01:10:21 Color: FF0000
01:10:21 Active: True
01:10:21 Levels: 0.0 - 255.0
01:10:21 Name: 1
01:10:21 Color: 00FF00
01:10:21 Active: True
01:10:21 Levels: 0.0 - 255.0
01:10:21 Name: 2
01:10:21 Color: 0000FF
01:10:21 Active: True
01:10:21 Levels: 0.0 - 255.0
01:10:21 isGreyscaleRenderingModel: False
01:10:21 Default Z/T positions:
01:10:21 Z = 2, T = 0
01:10:21 Rendering Defs on Image:
01:10:21 ID: 2603 (owner: training_user training_user)
01:10:21 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:10:21 ROI: ID: 302
01:10:21 Shape: id 321 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:10:21 Shape: id 322 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:10:21 ROI: ID: 303
01:10:21 Shape: id 323 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:10:21 ROI: ID: 304
01:10:21 Shape: id 324 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:10:21 ROI: ID: 305
01:10:21 Shape: id 325 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:10:21 ROI: ID: 306
01:10:21 <class 'omero.model.PolygonI'> Not supported by this code
01:10:21 Shape: id 326 theT 0 theZ 2 textValue test-Polygon
01:10:21 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:10:21 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:10:21 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:10:21 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:10:21 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:10:21 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:10:21 Removing Shape from ROI...
01:10:21 Deleting ROI: 307
01:10:21 Table Columns:
01:10:21 Uid
01:10:21 MyStringColumnInit
01:10:21 Row count: 10
01:10:21
01:10:21 Get All Data for rows: [3, 5, 7]
01:10:21 Data for Column: Uid
01:10:21 1
01:10:21 2
01:10:21 3
01:10:21 4
01:10:21 5
01:10:21 6
01:10:21 7
01:10:21 8
01:10:21 9
01:10:21 10
01:10:21 Data for Column: MyStringColumnInit
01:10:21 one
01:10:21 two
01:10:21 three
01:10:21 four
01:10:21 five
01:10:21 six
01:10:21 seven
01:10:21 eight
01:10:21 nine
01:10:21 ten
01:10:21
01:10:21 Get All Data for rows with slice: [3, 5, 7]
01:10:21 Data for Column: Uid
01:10:21 4
01:10:21 6
01:10:21 8
01:10:21 Data for Column: MyStringColumnInit
01:10:21 four
01:10:21 six
01:10:21 eight
01:10:21
01:10:21 Get Data for cols: [1] and between rows: 3 - 7
01:10:21 Data for Column: MyStringColumnInit
01:10:21 four
01:10:21 five
01:10:21 six
01:10:21 seven
01:10:21
01:10:21 Get Data for cols: [1] and between rows: 3 - 7 with slice
01:10:21 Data for Column: MyStringColumnInit
01:10:21 four
01:10:21 five
01:10:21 six
01:10:21 seven
01:10:21 Query Results for Column: Uid
01:10:21 3
01:10:21 4
01:10:21 5
01:10:21 6
01:10:21 7
01:10:21 8
01:10:21 Query Results for Column: MyStringColumnInit
01:10:21 three
01:10:21 four
01:10:21 five
01:10:21 six
01:10:21 seven
01:10:21 eight
01:10:21 Opened table with row-count: 10
01:10:21 New dataset, Id: 457
01:10:21 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
01:10:21 1505 <class 'omero.model.TagAnnotationI'> added by training_user
01:10:21 Tag value: New Tag
01:10:21 1506 <class 'omero.model.MapAnnotationI'> added by training_user
01:10:21
01:10:21 Creating an OriginalFile and FileAnnotation
01:10:21 Attaching FileAnnotation to Dataset: File ID: 1507 , README.txt Size: 15
01:10:21
01:10:21 Annotations on Dataset: New Dataset
01:10:21 File ID: 8548 README.txt Size: 15
01:10:21
01:10:21 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
01:10:21 File downloaded!
01:10:21 157 README.txt
01:10:21 57 README.txt
01:10:21 1407 README.txt
01:10:21 1507 README.txt
01:10:21 1457 README.txt
01:10:21 7 README.txt
01:10:21 107 README.txt
01:10:21 Found Annotation with namespace: imperial.training.demo
01:10:21 Plane: 0 0 0
01:10:21 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
01:10:21 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
01:10:21
01:10:21 List Datasets:
01:10:21 ID: 8 Name: MyDataset
01:10:21 ID: 9 Name: MyDataset
01:10:21 ID: 10 Name: MyDataset
01:10:21 ID: 14 Name: MyDataset
01:10:21 ID: 15 Name: MyDataset
01:10:21 ID: 16 Name: MyDataset
01:10:21 ID: 58 Name: MyDataset
01:10:21 ID: 59 Name: MyDataset
01:10:21 ID: 60 Name: MyDataset
01:10:21 ID: 64 Name: MyDataset
01:10:21 ID: 65 Name: MyDataset
01:10:21 ID: 66 Name: MyDataset
01:10:21 ID: 108 Name: MyDataset
01:10:21 ID: 109 Name: MyDataset
01:10:21 ID: 110 Name: MyDataset
01:10:21 ID: 114 Name: MyDataset
01:10:21 ID: 115 Name: MyDataset
01:10:21 ID: 116 Name: MyDataset
01:10:21 ID: 158 Name: MyDataset
01:10:21 ID: 159 Name: MyDataset
01:10:21 ID: 160 Name: MyDataset
01:10:21 ID: 164 Name: MyDataset
01:10:21 ID: 165 Name: MyDataset
01:10:21 ID: 166 Name: MyDataset
01:10:21 ID: 358 Name: MyDataset
01:10:21 ID: 359 Name: MyDataset
01:10:21 ID: 360 Name: MyDataset
01:10:21 ID: 364 Name: MyDataset
01:10:21 ID: 365 Name: MyDataset
01:10:21 ID: 366 Name: MyDataset
01:10:21 ID: 408 Name: MyDataset
01:10:21 ID: 409 Name: MyDataset
01:10:21 ID: 410 Name: MyDataset
01:10:21 ID: 414 Name: MyDataset
01:10:21 ID: 415 Name: MyDataset
01:10:21 ID: 416 Name: MyDataset
01:10:21 ID: 458 Name: MyDataset
01:10:21 ID: 459 Name: MyDataset
01:10:21 ID: 460 Name: MyDataset
01:10:21
01:10:21 List Tags:
01:10:21 ID: 8 Text: MyTag Desc: MyTag 0
01:10:21 ID: 9 Text: MyTag Desc: MyTag 1
01:10:21 ID: 10 Text: MyTag Desc: MyTag 2
01:10:21 ID: 16 Text: MyTag Desc: MyTag 0
01:10:21 ID: 17 Text: MyTag Desc: MyTag 1
01:10:21 ID: 18 Text: MyTag Desc: MyTag 2
01:10:21 ID: 58 Text: MyTag Desc: MyTag 0
01:10:21 ID: 59 Text: MyTag Desc: MyTag 1
01:10:21 ID: 60 Text: MyTag Desc: MyTag 2
01:10:21 ID: 66 Text: MyTag Desc: MyTag 0
01:10:21 ID: 67 Text: MyTag Desc: MyTag 1
01:10:21 ID: 68 Text: MyTag Desc: MyTag 2
01:10:21 ID: 108 Text: MyTag Desc: MyTag 0
01:10:21 ID: 109 Text: MyTag Desc: MyTag 1
01:10:21 ID: 110 Text: MyTag Desc: MyTag 2
01:10:21 ID: 116 Text: MyTag Desc: MyTag 0
01:10:21 ID: 117 Text: MyTag Desc: MyTag 1
01:10:21 ID: 118 Text: MyTag Desc: MyTag 2
01:10:21 ID: 158 Text: MyTag Desc: MyTag 0
01:10:32 ID: 159 Text: MyTag Desc: MyTag 1
01:10:32 ID: 160 Text: MyTag Desc: MyTag 2
01:10:32 ID: 166 Text: MyTag Desc: MyTag 0
01:10:32 ID: 167 Text: MyTag Desc: MyTag 1
01:10:32 ID: 168 Text: MyTag Desc: MyTag 2
01:10:32 ID: 1408 Text: MyTag Desc: MyTag 0
01:10:32 ID: 1409 Text: MyTag Desc: MyTag 1
01:10:32 ID: 1410 Text: MyTag Desc: MyTag 2
01:10:32 ID: 1416 Text: MyTag Desc: MyTag 0
01:10:32 ID: 1417 Text: MyTag Desc: MyTag 1
01:10:32 ID: 1418 Text: MyTag Desc: MyTag 2
01:10:32 ID: 1458 Text: MyTag Desc: MyTag 0
01:10:32 ID: 1459 Text: MyTag Desc: MyTag 1
01:10:32 ID: 1460 Text: MyTag Desc: MyTag 2
01:10:32 ID: 1466 Text: MyTag Desc: MyTag 0
01:10:32 ID: 1467 Text: MyTag Desc: MyTag 1
01:10:32 ID: 1468 Text: MyTag Desc: MyTag 2
01:10:32 ID: 1508 Text: MyTag Desc: MyTag 0
01:10:32 ID: 1509 Text: MyTag Desc: MyTag 1
01:10:32 ID: 1510 Text: MyTag Desc: MyTag 2
01:10:32 New dataset, Id: 461
01:10:32 New dataset 2, Id: 462
01:10:32 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:10:32 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:10:32 [[ 0 0 0 ... 102 103 104]
01:10:32 [ 0 0 0 ... 102 103 104]
01:10:32 [ 0 0 0 ... 102 103 104]
01:10:32 ...
01:10:32 [ 5 6 7 ... 102 103 104]
01:10:32 [ 5 6 7 ... 102 103 104]
01:10:32 [ 5 6 7 ... 102 103 104]]
01:10:32 shape: (100, 100)
01:10:32 min: 0 max: 104 pixel type: uint8
01:10:32 Average : 53.9125
01:10:32 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:10:32 kymograph_data (512, 100)
01:10:32 Attaching kymograph.png to image
01:10:32 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:10:32 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:10:32 [[ 0 0 0 ... 102 103 104]
01:10:32 [ 0 0 0 ... 102 103 104]
01:10:32 [ 0 0 0 ... 102 103 104]
01:10:32 ...
01:10:32 [ 5 6 7 ... 102 103 104]
01:10:32 [ 5 6 7 ... 102 103 104]
01:10:32 [ 5 6 7 ... 102 103 104]]
01:10:32 shape: (100, 100)
01:10:32 min: 0 max: 104 pixel type: uint8
01:10:32 Average : 53.9125
01:10:32 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:10:32 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:10:32 kymograph_data (512, 100)
01:10:32 Attaching kymograph.png to image
01:10:32 No file downloaded. Project not rated.
01:10:32 New image, Id: 2662
01:10:32 Starting at: http://nginx/web/api/
01:10:32 CSRF token QFf1d2Bpt9xhj3AleowsjGF0KfMaflmAuAXPtdguxzn1Fr25PZclJCgzVvM4ZuWV
01:10:32 Servers:
01:10:32 -id: 1
01:10:32 name: omero
01:10:32 host: omero
01:10:32 port: 4064
01:10:32 -id: 2
01:10:32 name: testintegration
01:10:32 host: testintegration
01:10:32 port: 14064
01:10:32 eventContext {'sessionId': 1796, 'sessionUuid': '254851f6-ea98-4d30-aa7b-35a23090b468', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
01:10:32 Projects:
01:10:32 2 Project 0
01:10:32 3 Project 0
01:10:32 Created Project: 406 API TEST foo
01:10:32 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 406, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/406/datasets/'}}
01:10:32 !! 03/25/24 01:10:32.892 error: communicator not destroyed during global destruction.+ deactivate
01:10:32 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:10:32 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:10:32 + export PATH
01:10:32 + unset _OLD_VIRTUAL_PATH
01:10:32 + '[' -n '' ']'
01:10:32 + '[' -n /bin/bash -o -n '' ']'
01:10:32 + hash -r
01:10:32 + '[' -n '' ']'
01:10:32 + unset VIRTUAL_ENV
01:10:32 + '[' '!' '' = nondestructive ']'
01:10:32 + unset -f deactivate
01:10:32 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
01:10:32 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
01:10:35 Note: Some input files use unchecked or unsafe operations.
01:10:35 Note: Recompile with -Xlint:unchecked for details.
01:10:36 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
01:10:45 omero.cmd.Delete2Response@6731787b
01:10:46 omero.cmd.Delete2Response@297ea53a
01:10:47 one [class java.lang.String] 1.0 [class java.lang.Double]
01:10:47 two [class java.lang.String] 2.0 [class java.lang.Double]
01:10:47 three [class java.lang.String] 3.0 [class java.lang.Double]
01:10:48 -1.0
01:10:48 0
01:10:48 1
01:10:48 2
01:10:56 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
01:10:56 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:10:56 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:10:56 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:10:56 Project:352 Project 0
01:10:56 Project:101 Project 1
01:10:56 dataset:101 Dataset 1-1
01:10:56 dataset:117 new Name 1
01:10:56 dataset:118 new Name 2
01:10:56 dataset:107 New Dataset
01:10:56 dataset:102 Dataset 1-2
01:10:56 Project:2 Project 0
01:10:56 Project:302 Project 0
01:10:56 Project:1 Project 1
01:10:56 dataset:1 Dataset 1-1
01:10:56 dataset:2 Dataset 1-2
01:10:56 dataset:7 New Dataset
01:10:56 dataset:17 new Name 1
01:10:56 dataset:18 new Name 2
01:10:56 Project:401 Project 1
01:10:56 dataset:452 Dataset 1-2
01:10:56 dataset:457 New Dataset
01:10:56 dataset:451 Dataset 1-1
01:10:56 Project:51 Project 1
01:10:56 dataset:68 new Name 2
01:10:56 dataset:57 New Dataset
01:10:56 dataset:67 new Name 1
01:10:56 dataset:51 Dataset 1-1
01:10:56 dataset:52 Dataset 1-2
01:10:56 Project:52 Project 0
01:10:56 Project:151 Project 1
01:10:56 dataset:168 new Name 2
01:10:56 dataset:167 new Name 1
01:10:56 dataset:152 Dataset 1-2
01:10:56 dataset:151 Dataset 1-1
01:10:56 dataset:157 New Dataset
01:10:56 Project:351 Project 1
01:10:56 dataset:401 Dataset 1-1
01:10:56 dataset:407 New Dataset
01:10:56 dataset:402 Dataset 1-2
01:10:56 dataset:418 new Name 2
01:10:56 dataset:417 new Name 1
01:10:56 Project:301 Project 1
01:10:56 dataset:367 new Name 1
01:10:56 dataset:368 new Name 2
01:10:56 dataset:351 Dataset 1-1
01:10:56 dataset:357 New Dataset
01:10:56 dataset:352 Dataset 1-2
01:10:56 Project:402 Project 0
01:10:56 Project:152 Project 0
01:10:56 Project:102 Project 0
01:10:56 image:2652 test.fake
01:10:56 image:2662 New Image
01:10:56 image:2663 newImageFrom2653
01:10:56 5
01:10:56 10
01:10:56 3
01:10:56 512
01:10:56 512
01:10:56 screen:252 Screen
01:10:56 screen:302 Screen
01:10:56 screen:301 Screen
01:10:56 plate:402 Plate Name 0
01:10:56 plate:401 Plate
01:10:56 screen:201 Screen
01:10:56 plate:302 Plate Name 0
01:10:56 plate:301 Plate
01:10:56 screen:101 Screen
01:10:56 plate:101 Plate
01:10:56 plate:102 Plate Name 0
01:10:57 screen:251 Screen
01:10:57 plate:352 Plate Name 0
01:10:57 plate:351 Plate
01:10:57 screen:2 Screen
01:10:57 screen:52 Screen
01:10:57 screen:202 Screen
01:10:57 screen:51 Screen
01:10:57 plate:52 Plate Name 0
01:10:57 plate:51 Plate
01:10:57 screen:152 Screen
01:10:57 screen:102 Screen
01:10:57 screen:1 Screen
01:10:57 plate:2 Plate Name 0
01:10:57 plate:1 Plate
01:10:57 screen:151 Screen
01:10:57 plate:152 Plate Name 0
01:10:57 plate:151 Plate
01:10:57 well:501
01:10:57 well:502
01:10:57 well:503
01:10:57 plate:2
01:10:57 plate:303
01:10:57 plate:151
01:10:57 plate:152
01:10:57 plate:153
01:10:57 plate:403
01:10:57 plate:1
01:10:57 plate:101
01:10:57 plate:51
01:10:57 plate:351
01:10:57 plate:53
01:10:57 plate:52
01:10:57 plate:401
01:10:57 plate:102
01:10:57 plate:353
01:10:57 plate:352
01:10:57 plate:302
01:10:57 plate:3
01:10:57 plate:301
01:10:57 plate:103
01:10:57 plate:402
01:10:57
01:10:57 List Datasets:
01:10:57 ID: 8 Name: MyDataset
01:10:57 ID: 9 Name: MyDataset
01:10:57 ID: 10 Name: MyDataset
01:10:57 ID: 14 Name: MyDataset
01:10:57 ID: 15 Name: MyDataset
01:10:57 ID: 16 Name: MyDataset
01:10:57 ID: 58 Name: MyDataset
01:10:57 ID: 59 Name: MyDataset
01:10:57 ID: 60 Name: MyDataset
01:10:57 ID: 64 Name: MyDataset
01:10:57
01:10:57 List Tags:
01:10:57 ID: 16 NS: omero.training.demo
01:10:57 ID: 17 NS: omero.training.demo
01:10:57 ID: 18 NS: omero.training.demo
01:10:57 ID: 66 NS: omero.training.demo
01:10:57 ID: 67 NS: omero.training.demo
01:10:57 ID: 68 NS: omero.training.demo
01:10:57 ID: 116 NS: omero.training.demo
01:10:57 ID: 117 NS: omero.training.demo
01:10:57 ID: 118 NS: omero.training.demo
01:10:57 ID: 166 NS: omero.training.demo
01:10:57 Dataset:16 MyDataset
01:10:57 Dataset:104 Orphaned dataset 2
01:10:57 Dataset:354 Orphaned dataset 2
01:10:57 Dataset:115 MyDataset
01:10:57 Dataset:410 MyDataset
01:10:57 Project:51 Project 1
01:10:57 Dataset:154 Orphaned dataset 2
01:10:57 Dataset:114 MyDataset
01:10:57 Dataset:362 New Dataset2
01:10:57 Dataset:153 Orphaned dataset 1
01:10:57 Dataset:409 MyDataset
01:10:57 Dataset:414 MyDataset
01:10:57 Dataset:162 New Dataset2
01:10:57 Dataset:458 MyDataset
01:10:57 Dataset:404 Orphaned dataset 2
01:10:57 Dataset:359 MyDataset
01:10:57 Dataset:65 MyDataset
01:10:57 Project:101 Project 1
01:10:57 Dataset:9 MyDataset
01:10:57 Dataset:460 MyDataset
01:10:57 Dataset:11 New Dataset
01:10:57 Dataset:13 FileAnnotationDelete
01:10:57 Dataset:364 MyDataset
01:10:57 Dataset:412 New Dataset2
01:10:57 Dataset:10 MyDataset
01:10:57 Dataset:366 MyDataset
01:10:57 Project:401 Project 1
01:10:57 Dataset:164 MyDataset
01:10:57 Dataset:53 Orphaned dataset 1
01:10:57 Dataset:58 MyDataset
01:10:57 Dataset:165 MyDataset
01:10:57 Dataset:363 FileAnnotationDelete
01:10:57 Project:301 Project 1
01:10:57 Dataset:59 MyDataset
01:10:57 Dataset:415 MyDataset
01:10:57 Dataset:60 MyDataset
01:10:57 Project:1 Project 1
01:10:57 Dataset:62 New Dataset2
01:10:57 Dataset:14 MyDataset
01:10:57 Dataset:61 New Dataset
01:10:57 Dataset:108 MyDataset
01:10:57 Dataset:15 MyDataset
01:10:57 Dataset:365 MyDataset
01:10:57 Dataset:8 MyDataset
01:10:57 Dataset:103 Orphaned dataset 1
01:10:57 Dataset:158 MyDataset
01:10:57 Dataset:465 MyDataset
01:10:57 Dataset:416 MyDataset
01:10:57 Dataset:353 Orphaned dataset 1
01:10:57 Dataset:159 MyDataset
01:10:57 Dataset:454 Orphaned dataset 2
01:10:57 Dataset:112 New Dataset2
01:10:57 Project:151 Project 1
01:10:57 Dataset:358 MyDataset
01:10:57 Dataset:116 MyDataset
01:10:57 Dataset:466 MyDataset
01:10:57 Dataset:3 Orphaned dataset 1
01:10:57 Dataset:161 New Dataset
01:10:57 Dataset:463 FileAnnotationDelete
01:10:57 Dataset:54 Orphaned dataset 2
01:10:57 Dataset:63 FileAnnotationDelete
01:10:57 Dataset:64 MyDataset
01:10:57 Dataset:160 MyDataset
01:10:57 Dataset:361 New Dataset
01:10:57 Dataset:453 Orphaned dataset 1
01:10:57 Dataset:109 MyDataset
01:10:57 Dataset:408 MyDataset
01:10:57 Dataset:111 New Dataset
01:10:57 Dataset:166 MyDataset
01:10:57 Dataset:12 New Dataset2
01:10:57 Dataset:113 FileAnnotationDelete
01:10:57 Dataset:4 Orphaned dataset 2
01:10:57 Project:351 Project 1
01:10:57 Dataset:461 New Dataset
01:10:57 Dataset:66 MyDataset
01:10:57 Dataset:110 MyDataset
01:10:57 Dataset:413 FileAnnotationDelete
01:10:57 Dataset:163 FileAnnotationDelete
01:10:57 Dataset:403 Orphaned dataset 1
01:10:57 Dataset:459 MyDataset
01:10:57 Dataset:411 New Dataset
01:10:57 Dataset:462 New Dataset2
01:10:57 Dataset:464 MyDataset
01:10:57 Dataset:360 MyDataset
01:10:57 Size:0
01:10:58 512 512
01:11:00 9
01:11:00 9
01:11:00 1
01:11:04 Logged in as ladmin_user
01:11:05 Added 'training_user's tag' to dataset New Dataset on behalf of training_user
01:11:05 Added 'ladmin_user's tag' to dataset New Dataset as admin.
01:11:05 Finished: SUCCESS