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00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/luts/
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00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__10/
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00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__5/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__6/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__7/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__8/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__9/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__4/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__4/OMERO3__1.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__5/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__5/OMERO3__4.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__6/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__6/OMERO3__5.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__7/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__7/OMERO3__6.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.1__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/t/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.3__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.4__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4__0/OMERO3A__11.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__1/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__2/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__3/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:58:34 creating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/psql-footer.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/psql-header.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/schema.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/views.sql
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/test.xml
00:58:34 inflating: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/update_dependencies.sh
00:58:34 extracting: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/components/antlib/resources/gitversion.xml
00:58:34 extracting: openmicroscopy-5.6.3-578-238c03e127-ice36-b7/components/tools/OmeroCpp/cmake/GitVersion.cmake
00:58:34 + rm -f openmicroscopy-5.6.3-578-238c03e127-ice36-b7.zip
00:58:34 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-578-238c03e127-ice36-b7 /home/omero/workspace/OMERO-training/openmicroscopy
00:58:34 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:58:34 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:58:34 ++ ls OMERO.server-5.6.3-578-238c03e127-ice36-b7.zip
00:58:34 + ZIP=OMERO.server-5.6.3-578-238c03e127-ice36-b7.zip
00:58:34 + DIST=OMERO.server-5.6.3-578-238c03e127-ice36-b7
00:58:34 + unzip -n OMERO.server-5.6.3-578-238c03e127-ice36-b7.zip
00:58:34 Archive: OMERO.server-5.6.3-578-238c03e127-ice36-b7.zip
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/blitz/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/grid/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/profiles/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/error/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/grid/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/client/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/luts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/luts/janelia/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/luts/matplotlib/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/luts/ncsa_paledit/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/luts/seaborn/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/luts/wcif/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/omero/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/omero/analysis_scripts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/omero/annotation_scripts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/omero/export_scripts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/omero/figure_scripts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/omero/import_scripts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/scripts/omero/util_scripts/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/lib/server/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/share/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/share/licenses/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/misc/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__1/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__10/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__11/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__2/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__3/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__4/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__5/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__6/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__7/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__8/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3A__9/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__4/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__5/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__6/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO3__7/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.1__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/t/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.3__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.4__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__1/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__2/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__3/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/var/
00:58:34 creating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/var/tmp/
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/LICENSE.txt
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/backup.cfg
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/blitz/mail-senders.example
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/blitz/mail-server.example
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/build.properties
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/env.bat
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/env.sh
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/hibernate.properties
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/ice.config
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/logback-cli.xml
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/logback-indexing-cli.xml
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/logback-indexing.xml
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/logback.xml
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/mime.types
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/node1.cfg
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/node2.cfg
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/omero.properties
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/profiles/psql
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/rollover.cfg
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/Windows.cfg
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/error/maintainance.html
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/grid/README
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/grid/default.xml
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/grid/templates.xml
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/grid/windefault.xml
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/ice.config
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/internal.cfg
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/master.cfg
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/templates/robot.template
00:58:34 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/etc/testdropbox.config
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00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO4__0/OMERO3A__11.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/psql-footer.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/psql-header.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/schema.sql
00:58:36 inflating: OMERO.server-5.6.3-578-238c03e127-ice36-b7/sql/psql/OMERO5.4__0/views.sql
00:58:36 + rm -f OMERO.server-5.6.3-578-238c03e127-ice36-b7.zip
00:58:36 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-578-238c03e127-ice36-b7 /home/omero/workspace/OMERO-training/OMERO.server
00:58:36 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
00:58:36 ++ deactivate nondestructive
00:58:36 ++ '[' -n '' ']'
00:58:36 ++ '[' -n '' ']'
00:58:36 ++ hash -r
00:58:36 ++ '[' -n '' ']'
00:58:36 ++ unset VIRTUAL_ENV
00:58:36 ++ unset VIRTUAL_ENV_PROMPT
00:58:36 ++ '[' '!' nondestructive = nondestructive ']'
00:58:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
00:58:36 ++ export VIRTUAL_ENV
00:58:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:36 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:36 ++ export PATH
00:58:36 ++ '[' -n '' ']'
00:58:36 ++ '[' -z '' ']'
00:58:36 ++ _OLD_VIRTUAL_PS1=
00:58:36 ++ PS1='(.venv3) '
00:58:36 ++ export PS1
00:58:36 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:58:36 ++ export VIRTUAL_ENV_PROMPT
00:58:36 ++ hash -r
00:58:36 + for x in *.gz
00:58:36 + pip install omero_dropbox-5.7.1.dev0.tar.gz
00:58:36 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:58:36 Installing build dependencies: started
00:58:37 Installing build dependencies: finished with status 'done'
00:58:37 Getting requirements to build wheel: started
00:58:38 Getting requirements to build wheel: finished with status 'done'
00:58:38 Preparing metadata (pyproject.toml): started
00:58:38 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:38 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
00:58:38 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:58:38 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
00:58:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:58:38 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
00:58:38 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:58:38 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0)
00:58:38 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
00:58:38 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:58:38 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
00:58:38 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:58:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:58:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:58:38 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
00:58:38 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:58:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:58:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:58:38 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
00:58:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.11.12)
00:58:38 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:58:38 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:58:38 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:58:38 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:58:38 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:58:38 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:58:38 Building wheels for collected packages: omero-dropbox
00:58:38 Building wheel for omero-dropbox (pyproject.toml): started
00:58:39 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:58:39 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=60cde1640fd4675302cf424a526a768c158ab1fc23cdfbfe2ed9057c685ab2ff
00:58:39 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
00:58:39 Successfully built omero-dropbox
00:58:39 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
00:58:42
00:58:42 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
00:58:42 + for x in *.gz
00:58:42 + pip install omero_marshal-0.9.2.dev0.tar.gz
00:58:42 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:58:42 Installing build dependencies: started
00:58:43 Installing build dependencies: finished with status 'done'
00:58:43 Getting requirements to build wheel: started
00:58:43 Getting requirements to build wheel: finished with status 'done'
00:58:43 Preparing metadata (pyproject.toml): started
00:58:43 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:43 Building wheels for collected packages: omero_marshal
00:58:43 Building wheel for omero_marshal (pyproject.toml): started
00:58:44 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:58:44 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=f3158cd8cd9a21847cfdf8e93bc0193ef9224a14ebc945eb6808fbbf2d659c90
00:58:44 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
00:58:44 Successfully built omero_marshal
00:58:44 Installing collected packages: omero_marshal
00:58:44 Successfully installed omero_marshal-0.9.2.dev0
00:58:44 + for x in *.gz
00:58:44 + pip install omero_py-5.22.0.dev0.tar.gz
00:58:44 Processing ./omero_py-5.22.0.dev0.tar.gz
00:58:44 Installing build dependencies: started
00:58:45 Installing build dependencies: finished with status 'done'
00:58:45 Getting requirements to build wheel: started
00:58:46 Getting requirements to build wheel: finished with status 'done'
00:58:46 Preparing metadata (pyproject.toml): started
00:58:46 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:58:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:58:46 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0)
00:58:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:58:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:58:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:58:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:58:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:58:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:58:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:58:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
00:58:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2025.11.12)
00:58:46 Building wheels for collected packages: omero-py
00:58:46 Building wheel for omero-py (pyproject.toml): started
00:58:47 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:58:47 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=3b4d20fabf25ac80f80abf94e17b18353a57a45c882fbccb6657f115e4f536f4
00:58:47 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
00:58:47 Successfully built omero-py
00:58:47 Installing collected packages: omero-py
00:58:47 Attempting uninstall: omero-py
00:58:47 Found existing installation: omero-py 5.21.3
00:58:47 Uninstalling omero-py-5.21.3:
00:58:47 Successfully uninstalled omero-py-5.21.3
00:58:49 Successfully installed omero-py-5.22.0.dev0
00:58:49 + for x in *.gz
00:58:49 + pip install omero_scripts-5.9.2.dev0.tar.gz
00:58:50 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:58:50 Installing build dependencies: started
00:58:50 Installing build dependencies: finished with status 'done'
00:58:50 Getting requirements to build wheel: started
00:58:51 Getting requirements to build wheel: finished with status 'done'
00:58:51 Preparing metadata (pyproject.toml): started
00:58:51 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:51 Building wheels for collected packages: omero-scripts
00:58:51 Building wheel for omero-scripts (pyproject.toml): started
00:58:51 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:58:51 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=5910267f516c637e4350447e9a8a7d82568c01d71b33adea756eac3757c53e5a
00:58:51 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
00:58:51 Successfully built omero-scripts
00:58:51 Installing collected packages: omero-scripts
00:58:51 Successfully installed omero-scripts-5.9.2.dev0
00:58:51 + for x in *.gz
00:58:51 + pip install omero_web-5.30.1.dev0.tar.gz
00:58:52 Processing ./omero_web-5.30.1.dev0.tar.gz
00:58:52 Installing build dependencies: started
00:58:53 Installing build dependencies: finished with status 'done'
00:58:53 Getting requirements to build wheel: started
00:58:53 Getting requirements to build wheel: finished with status 'done'
00:58:53 Preparing metadata (pyproject.toml): started
00:58:53 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:53 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
00:58:53 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
00:58:53 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:58:53 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
00:58:53 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
00:58:53 Collecting django-pipeline (from omero-web==5.30.1.dev0)
00:58:53 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:58:54 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
00:58:54 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:58:54 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
00:58:54 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:58:54 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
00:58:54 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:58:54 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
00:58:54 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.1.0)
00:58:54 Collecting pytz (from omero-web==5.30.1.dev0)
00:58:54 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:58:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
00:58:54 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
00:58:54 Collecting importlib-resources (from omero-web==5.30.1.dev0)
00:58:54 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:58:54 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:58:54 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:58:54 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:58:54 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:58:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
00:58:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
00:58:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.4.0)
00:58:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
00:58:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
00:58:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
00:58:54 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
00:58:54 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
00:58:54 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:58:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
00:58:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
00:58:54 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
00:58:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2025.11.12)
00:58:54 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:58:54 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
00:58:54 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:58:54 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:58:54 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:58:54 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:58:54 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:58:54 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:58:54 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:58:54 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:58:54 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:58:54 Building wheels for collected packages: omero-web
00:58:54 Building wheel for omero-web (pyproject.toml): started
00:58:55 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:58:55 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=662aa51bbea5d30fa9adbe2934fe7fa4c071d2e1181cd13014e71b81a6d7ae2c
00:58:55 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
00:58:55 Successfully built omero-web
00:58:55 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:58:58
00:58:58 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
00:58:58 + cd /home/omero/workspace/OMERO-training/OMERO.server
00:58:58 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
00:58:58 + HOSTNAME=9aa82dd07910
00:58:58 + PORT=4064
00:58:58 + WEBHOST=http://nginx/web
00:58:58 + SERVER_NAME=omero
00:58:58 + ROOT_PASSWORD=omero
00:58:58 + GROUP_NAME=training_group
00:58:58 + GROUP_NAME_2=training_group-2
00:58:58 + USER_NAME=training_user
00:58:58 + USER_NAME_2=training_user-2
00:58:58 + LIGHTADMIN_USER_NAME=ladmin_user
00:58:58 + USER_PASSWORD=ome
00:58:58 + CONFIG_FILENAME=training_ice.config
00:58:58 + omero login root@9aa82dd07910:4064 -w omero
00:58:59 Created session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:58:59 + omero group add training_group --type read-only --ignore-existing
00:59:00 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:00 Group exists: training_group (id=3)
00:59:00 + omero group add training_group-2 --type read-only --ignore-existing
00:59:00 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:00 Group exists: training_group-2 (id=4)
00:59:01 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
00:59:01 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:01 User exists: training_user (id=2)
00:59:02 + omero user joingroup --name training_user --group-name training_group training_group-2
00:59:02 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:02 2 is already in group 3
00:59:02 2 is already in group 4
00:59:02 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
00:59:03 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:03 User exists: training_user-2 (id=3)
00:59:03 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
00:59:04 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:04 3 is already in group 3
00:59:04 3 is already in group 4
00:59:04 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
00:59:05 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:05 User exists: ladmin_user (id=4)
00:59:05 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
00:59:06 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:06 4 is already in group 3
00:59:06 4 is already in group 4
00:59:06 ++ omero user info ladmin_user --style plain
00:59:06 ++ cut -d, -f1
00:59:07 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:07 + id=4
00:59:07 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
00:59:08 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:08 Experimenter:4
00:59:08 + omero logout
00:59:10 + touch test.fake
00:59:10 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group
00:59:11 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:11 + nProjects=1
00:59:11 + nDatasets=2
00:59:11 + echo 'Creating projects and datasets'
00:59:11 Creating projects and datasets
00:59:11 + (( i=1 ))
00:59:11 + (( i<=1 ))
00:59:11 ++ omero obj new Project 'name=Project 1'
00:59:12 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:12 + project=Project:251
00:59:12 + (( j=1 ))
00:59:12 + (( j<=2 ))
00:59:12 ++ omero obj new Dataset 'name=Dataset 1-1'
00:59:13 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:13 + dataset=Dataset:251
00:59:13 + omero obj new ProjectDatasetLink parent=Project:251 child=Dataset:251
00:59:14 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:14 ProjectDatasetLink:251
00:59:14 + echo 'Importing image into dataset'
00:59:14 Importing image into dataset
00:59:14 + omero import -d Dataset:251 test.fake --debug ERROR
00:59:15 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:16 2026-01-04 00:59:16,051 251 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:59:16 2026-01-04 00:59:16,066 266 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: e50bb7d76ad9f4608a619c4069582ca2fe9c7bc5 date: 4 January 2026
00:59:17 2026-01-04 00:59:17,341 1541 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc."
00:59:19 Image:751
00:59:19 Other imported objects:
00:59:19 Fileset:251
00:59:19
00:59:19 ==> Summary
00:59:19 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.982
00:59:19 + (( j++ ))
00:59:19 + (( j<=2 ))
00:59:19 ++ omero obj new Dataset 'name=Dataset 1-2'
00:59:20 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:20 + dataset=Dataset:252
00:59:20 + omero obj new ProjectDatasetLink parent=Project:251 child=Dataset:252
00:59:21 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:21 ProjectDatasetLink:252
00:59:21 + echo 'Importing image into dataset'
00:59:21 Importing image into dataset
00:59:21 + omero import -d Dataset:252 test.fake --debug ERROR
00:59:22 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:22 2026-01-04 00:59:22,706 237 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:59:22 2026-01-04 00:59:22,721 252 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: e50bb7d76ad9f4608a619c4069582ca2fe9c7bc5 date: 4 January 2026
00:59:23 2026-01-04 00:59:23,828 1359 [ main] ERROR ome.system.UpgradeCheck - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc. "Server returned HTTP response code: 503 for URL: http://qa.openmicroscopy.org/registry/hit/?version=5.8.4-SNAPSHOT;os.name=Linux;os.arch=amd64;os.version=5.14.0-611.16.1.el9_7.x86_64;java.runtime.version=11.0.25%2B9-LTS;java.vm.vendor=Red+Hat%2C+Inc."
00:59:24 Image:752
00:59:24 Other imported objects:
00:59:24 Fileset:252
00:59:24
00:59:24 ==> Summary
00:59:24 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.080
00:59:25 + (( j++ ))
00:59:25 + (( j<=2 ))
00:59:25 + (( i++ ))
00:59:25 + (( i<=1 ))
00:59:25 + (( j=1 ))
00:59:25 + (( j<=2 ))
00:59:25 + omero obj new Dataset 'name=Orphaned dataset 1'
00:59:25 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:25 Dataset:253
00:59:26 + (( j++ ))
00:59:26 + (( j<=2 ))
00:59:26 + omero obj new Dataset 'name=Orphaned dataset 2'
00:59:27 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:29 Dataset:254
00:59:29 + (( j++ ))
00:59:29 + (( j<=2 ))
00:59:29 + echo 'Importing image file'
00:59:29 Importing image file
00:59:29 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:59:29 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:59:38 ++ sed -n -e 's/^Image://p' image_import.log
00:59:38 + imageid=753
00:59:38 ++ omero obj new MapAnnotation
00:59:39 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:39 + MAP=MapAnnotation:251
00:59:39 + omero obj map-set MapAnnotation:251 mapValue testkey testvalue
00:59:40 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:40 MapAnnotation:251
00:59:40 + omero obj new ImageAnnotationLink parent=Image:753 child=MapAnnotation:251
00:59:41 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:41 ImageAnnotationLink:251
00:59:41 ++ omero obj new Screen name=Screen
00:59:42 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:42 + screen=Screen:251
00:59:42 ++ omero obj new Plate name=Plate
00:59:43 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:43 + plate=Plate:251
00:59:43 + omero obj new ScreenPlateLink parent=Screen:251 child=Plate:251
00:59:44 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:44 ScreenPlateLink:251
00:59:44 + echo 'Importing SPW file'
00:59:44 Importing SPW file
00:59:44 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
00:59:44 + omero import -r Screen:251 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
00:59:54 ++ sed -n -e 's/^Plate://p' plate_import.log
00:59:54 + plateid=252
00:59:54 + omero logout
00:59:54 + omero login training_user-2@9aa82dd07910:4064 -w ome -g training_group
00:59:55 Created session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:55 + omero obj new Project 'name=Project 0'
00:59:56 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:56 Project:252
00:59:56 + omero obj new Dataset 'name=Dataset 0'
00:59:57 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:57 Dataset:255
00:59:57 + omero import test.fake --debug ERROR
00:59:58 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:59 2026-01-04 00:59:59,361 250 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:59:59 2026-01-04 00:59:59,376 265 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: e50bb7d76ad9f4608a619c4069582ca2fe9c7bc5 date: 4 January 2026
01:00:05 Image:757
01:00:05 Other imported objects:
01:00:05 Fileset:255
01:00:05
01:00:05 ==> Summary
01:00:05 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.773
01:00:05 + omero obj new Screen name=Screen
01:00:06 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:06 Screen:252
01:00:06 + omero obj new Plate name=Plate
01:00:07 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:07 Plate:253
01:00:07 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group-2
01:00:08 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:08 + omero obj new Project 'name=Project 0'
01:00:09 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:09 Project:253
01:00:09 + omero obj new Dataset 'name=Dataset 0'
01:00:10 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:10 Dataset:256
01:00:10 + omero import test.fake --debug ERROR
01:00:11 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:12 2026-01-04 01:00:12,022 263 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
01:00:12 2026-01-04 01:00:12,039 280 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: e50bb7d76ad9f4608a619c4069582ca2fe9c7bc5 date: 4 January 2026
01:00:18 Image:758
01:00:18 Other imported objects:
01:00:18 Fileset:256
01:00:18
01:00:18 ==> Summary
01:00:18 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.799
01:00:18 + omero obj new Screen name=Screen
01:00:19 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:19 Screen:253
01:00:19 + omero obj new Plate name=Plate
01:00:20 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:20 Plate:254
01:00:20 + omero logout
01:00:21 + echo omero.host=9aa82dd07910
01:00:21 + echo omero.port=4064
01:00:21 + echo omero.webhost=http://nginx/web
01:00:21 + echo omero.servername=omero
01:00:21 + echo omero.user=training_user
01:00:21 + echo omero.pass=ome
01:00:21 + echo omero.group=training_group
01:00:21 + echo omero.projectid=251
01:00:21 + echo omero.datasetid=252
01:00:21 + echo omero.imageid=753
01:00:21 + echo omero.plateid=252
01:00:21 + echo omero.screenid=251
01:00:21 + echo omero.group2=training_group-2
01:00:21 + echo omero.ladmin=ladmin_user
01:00:21 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:00:21 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:00:21 + omero sessions clear
01:00:22 1 session(s) cleared
01:00:22 !! 01/04/26 01:00:22.619 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:22 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:22 + pip install --upgrade requests
01:00:22 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
01:00:23 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
01:00:23 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
01:00:23 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
01:00:23 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2025.11.12)
01:00:23 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:00:31 Running training suite
01:00:31 created 20 shapes
01:00:31 retrieved 20 shapes in 4 batches
01:00:31 Current user:
01:00:31 ID: 2
01:00:31 Username: training_user
01:00:31 Full Name: training_user training_user
01:00:31 Is Admin: False
01:00:31 []
01:00:31 Member of:
01:00:31 ID: 3 Name: training_group
01:00:31 ID: 4 Name: training_group-2
01:00:31 Current group: training_group
01:00:31 Group owners:
01:00:31 Group members:
01:00:31 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:31 ID: 2 UserName: training_user Name: training_user training_user
01:00:31 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:00:31 Owner of:
01:00:31 Admins:
01:00:31 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:31 ID: 0 UserName: root Name: root root
01:00:31 Created new Image:759 Name:"numpy image"
01:00:31 newPlane for z,t: 0 0 uint8 0 127
01:00:31 newPlane for z,t: 0 1 uint8 0 127
01:00:31 newPlane for z,t: 0 2 uint8 0 127
01:00:31 newPlane for z,t: 0 3 uint8 0 127
01:00:31 newPlane for z,t: 0 4 uint8 0 127
01:00:31 newPlane for z,t: 0 5 uint8 0 127
01:00:31 newPlane for z,t: 0 6 uint8 0 127
01:00:31 newPlane for z,t: 0 7 uint8 0 127
01:00:31 newPlane for z,t: 0 8 uint8 0 127
01:00:31 newPlane for z,t: 0 9 uint8 0 127
01:00:31 newPlane for z,t: 1 0 uint8 0 127
01:00:31 newPlane for z,t: 1 1 uint8 0 127
01:00:31 newPlane for z,t: 1 2 uint8 0 127
01:00:31 newPlane for z,t: 1 3 uint8 0 127
01:00:31 newPlane for z,t: 1 4 uint8 0 127
01:00:31 newPlane for z,t: 1 5 uint8 0 127
01:00:31 newPlane for z,t: 1 6 uint8 0 127
01:00:31 newPlane for z,t: 1 7 uint8 0 127
01:00:31 newPlane for z,t: 1 8 uint8 0 127
01:00:31 newPlane for z,t: 1 9 uint8 0 127
01:00:31 newPlane for z,t: 2 0 uint8 0 127
01:00:31 newPlane for z,t: 2 1 uint8 0 127
01:00:31 newPlane for z,t: 2 2 uint8 0 127
01:00:31 newPlane for z,t: 2 3 uint8 0 127
01:00:31 newPlane for z,t: 2 4 uint8 0 127
01:00:31 newPlane for z,t: 2 5 uint8 0 127
01:00:31 newPlane for z,t: 2 6 uint8 0 127
01:00:31 newPlane for z,t: 2 7 uint8 0 127
01:00:31 newPlane for z,t: 2 8 uint8 0 127
01:00:31 newPlane for z,t: 2 9 uint8 0 127
01:00:31 newPlane for z,t: 3 0 uint8 0 127
01:00:31 newPlane for z,t: 3 1 uint8 0 127
01:00:31 newPlane for z,t: 3 2 uint8 0 127
01:00:31 newPlane for z,t: 3 3 uint8 0 127
01:00:31 newPlane for z,t: 3 4 uint8 0 127
01:00:31 newPlane for z,t: 3 5 uint8 0 127
01:00:31 newPlane for z,t: 3 6 uint8 0 127
01:00:31 newPlane for z,t: 3 7 uint8 0 127
01:00:31 newPlane for z,t: 3 8 uint8 0 127
01:00:31 newPlane for z,t: 3 9 uint8 0 127
01:00:31 newPlane for z,t: 4 0 uint8 0 127
01:00:31 newPlane for z,t: 4 1 uint8 0 127
01:00:31 newPlane for z,t: 4 2 uint8 0 127
01:00:31 newPlane for z,t: 4 3 uint8 0 127
01:00:31 newPlane for z,t: 4 4 uint8 0 127
01:00:31 newPlane for z,t: 4 5 uint8 0 127
01:00:31 newPlane for z,t: 4 6 uint8 0 127
01:00:31 newPlane for z,t: 4 7 uint8 0 127
01:00:31 newPlane for z,t: 4 8 uint8 0 127
01:00:31 newPlane for z,t: 4 9 uint8 0 127
01:00:31 Deleting, please wait.
01:00:31 Error? False
01:00:31 753 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:31 training_user_2/Blitz-0-Ice.ThreadPool.Server-0/2026-01/04/00-59-36.698/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:31 1
01:00:31 training_user_2/Blitz-0-Ice.ThreadPool.Server-0/2026-01/04/00-59-36.698/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:31 Current group: training_group
01:00:31 Permissions: READ-ONLY (rwr---)
01:00:31 Project 0 Owner: training_user-2 training_user-2
01:00:31 Project 1 Owner: training_user training_user
01:00:31 Project 0 Owner: training_user-2 training_user-2
01:00:31 Project 1 Owner: training_user training_user
01:00:31 Project 0 Owner: training_user-2 training_user-2
01:00:31 Project 1 Owner: training_user training_user
01:00:31 Project 0 Owner: training_user-2 training_user-2
01:00:31 Project 1 Owner: training_user training_user
01:00:31 Project 0 Owner: training_user-2 training_user-2
01:00:31 Project 1 Owner: training_user training_user
01:00:31 Project 0 Owner: training_user-2 training_user-2
01:00:31 Project 1 Owner: training_user training_user
01:00:31 Project 0 Owner: training_user-2 training_user-2
01:00:31 Project 1 Owner: training_user training_user
01:00:31 Image: <_ImageWrapper id=753>
01:00:31 Image: <_ImageWrapper id=753> Group: training_group 3
01:00:31 Image: <_ImageWrapper id=753> Channel: 0
01:00:31 Channel: 1
01:00:31 Channel: 2
01:00:31
01:00:31
01:00:31 original_metadata
01:00:31 global_metadata
01:00:31 series_metadata
01:00:31
01:00:31 Plane at zct: 0 0 0
01:00:31 [[ 0 0 0 ... 253 254 255]
01:00:31 [ 0 0 0 ... 253 254 255]
01:00:31 [ 0 0 0 ... 253 254 255]
01:00:31 ...
01:00:31 [ 0 1 2 ... 253 254 255]
01:00:31 [ 0 1 2 ... 253 254 255]
01:00:31 [ 0 1 2 ... 253 254 255]]
01:00:31 shape: (512, 512)
01:00:31 min: 0 max: 255 pixel type: uint8
01:00:31
01:00:31 Z stack of tiles:
01:00:31 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:31 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:31 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:31 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:31 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:31
01:00:31 Hyper stack of planes:
01:00:31 plane zct: (2, 0, 0) min: 0 max: 255
01:00:31 plane zct: (2, 0, 1) min: 0 max: 255
01:00:31 plane zct: (2, 0, 2) min: 0 max: 255
01:00:31 plane zct: (2, 0, 3) min: 0 max: 255
01:00:31 plane zct: (2, 0, 4) min: 0 max: 255
01:00:31 plane zct: (2, 0, 5) min: 0 max: 255
01:00:31 plane zct: (2, 0, 6) min: 0 max: 255
01:00:31 plane zct: (2, 0, 7) min: 0 max: 255
01:00:31 plane zct: (2, 0, 8) min: 0 max: 255
01:00:31 plane zct: (2, 0, 9) min: 0 max: 255
01:00:31 plane zct: (2, 1, 0) min: 0 max: 255
01:00:31 plane zct: (2, 1, 1) min: 0 max: 255
01:00:31 plane zct: (2, 1, 2) min: 0 max: 255
01:00:31 plane zct: (2, 1, 3) min: 0 max: 255
01:00:31 plane zct: (2, 1, 4) min: 0 max: 255
01:00:31 plane zct: (2, 1, 5) min: 0 max: 255
01:00:31 plane zct: (2, 1, 6) min: 0 max: 255
01:00:31 plane zct: (2, 1, 7) min: 0 max: 255
01:00:31 plane zct: (2, 1, 8) min: 0 max: 255
01:00:31 plane zct: (2, 1, 9) min: 0 max: 255
01:00:31 plane zct: (2, 2, 0) min: 0 max: 255
01:00:31 plane zct: (2, 2, 1) min: 0 max: 255
01:00:31 plane zct: (2, 2, 2) min: 0 max: 255
01:00:31 plane zct: (2, 2, 3) min: 0 max: 255
01:00:31 plane zct: (2, 2, 4) min: 0 max: 255
01:00:31 plane zct: (2, 2, 5) min: 0 max: 255
01:00:31 plane zct: (2, 2, 6) min: 0 max: 255
01:00:31 plane zct: (2, 2, 7) min: 0 max: 255
01:00:31 plane zct: (2, 2, 8) min: 0 max: 255
01:00:31 plane zct: (2, 2, 9) min: 0 max: 255
01:00:31 plane zct: (3, 0, 0) min: 0 max: 255
01:00:31 plane zct: (3, 0, 1) min: 0 max: 255
01:00:31 plane zct: (3, 0, 2) min: 0 max: 255
01:00:31 plane zct: (3, 0, 3) min: 0 max: 255
01:00:31 plane zct: (3, 0, 4) min: 0 max: 255
01:00:31 plane zct: (3, 0, 5) min: 0 max: 255
01:00:31 plane zct: (3, 0, 6) min: 0 max: 255
01:00:31 plane zct: (3, 0, 7) min: 0 max: 255
01:00:31 plane zct: (3, 0, 8) min: 0 max: 255
01:00:31 plane zct: (3, 0, 9) min: 0 max: 255
01:00:31 plane zct: (3, 1, 0) min: 0 max: 255
01:00:31 plane zct: (3, 1, 1) min: 0 max: 255
01:00:31 plane zct: (3, 1, 2) min: 0 max: 255
01:00:31 plane zct: (3, 1, 3) min: 0 max: 255
01:00:31 plane zct: (3, 1, 4) min: 0 max: 255
01:00:31 plane zct: (3, 1, 5) min: 0 max: 255
01:00:31 plane zct: (3, 1, 6) min: 0 max: 255
01:00:31 plane zct: (3, 1, 7) min: 0 max: 255
01:00:31 plane zct: (3, 1, 8) min: 0 max: 255
01:00:31 plane zct: (3, 1, 9) min: 0 max: 255
01:00:31 plane zct: (3, 2, 0) min: 0 max: 255
01:00:31 plane zct: (3, 2, 1) min: 0 max: 255
01:00:31 plane zct: (3, 2, 2) min: 0 max: 255
01:00:31 plane zct: (3, 2, 3) min: 0 max: 255
01:00:31 plane zct: (3, 2, 4) min: 0 max: 255
01:00:31 plane zct: (3, 2, 5) min: 0 max: 255
01:00:31 plane zct: (3, 2, 6) min: 0 max: 255
01:00:31 plane zct: (3, 2, 7) min: 0 max: 255
01:00:31 plane zct: (3, 2, 8) min: 0 max: 255
01:00:31 plane zct: (3, 2, 9) min: 0 max: 255
01:00:31 plane zct: (4, 0, 0) min: 0 max: 255
01:00:31 plane zct: (4, 0, 1) min: 0 max: 255
01:00:31 plane zct: (4, 0, 2) min: 0 max: 255
01:00:31 plane zct: (4, 0, 3) min: 0 max: 255
01:00:31 plane zct: (4, 0, 4) min: 0 max: 255
01:00:31 plane zct: (4, 0, 5) min: 0 max: 255
01:00:31 plane zct: (4, 0, 6) min: 0 max: 255
01:00:31 plane zct: (4, 0, 7) min: 0 max: 255
01:00:31 plane zct: (4, 0, 8) min: 0 max: 255
01:00:31 plane zct: (4, 0, 9) min: 0 max: 255
01:00:31 plane zct: (4, 1, 0) min: 0 max: 255
01:00:31 plane zct: (4, 1, 1) min: 0 max: 255
01:00:31 plane zct: (4, 1, 2) min: 0 max: 255
01:00:31 plane zct: (4, 1, 3) min: 0 max: 255
01:00:31 plane zct: (4, 1, 4) min: 0 max: 255
01:00:31 plane zct: (4, 1, 5) min: 0 max: 255
01:00:31 plane zct: (4, 1, 6) min: 0 max: 255
01:00:31 plane zct: (4, 1, 7) min: 0 max: 255
01:00:31 plane zct: (4, 1, 8) min: 0 max: 255
01:00:31 plane zct: (4, 1, 9) min: 0 max: 255
01:00:31 plane zct: (4, 2, 0) min: 0 max: 255
01:00:31 plane zct: (4, 2, 1) min: 0 max: 255
01:00:31 plane zct: (4, 2, 2) min: 0 max: 255
01:00:31 plane zct: (4, 2, 3) min: 0 max: 255
01:00:31 plane zct: (4, 2, 4) min: 0 max: 255
01:00:31 plane zct: (4, 2, 5) min: 0 max: 255
01:00:31 plane zct: (4, 2, 6) min: 0 max: 255
01:00:31 plane zct: (4, 2, 7) min: 0 max: 255
01:00:31 plane zct: (4, 2, 8) min: 0 max: 255
01:00:31 plane zct: (4, 2, 9) min: 0 max: 255
01:00:31 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
01:00:31
01:00:31 List Projects:
01:00:31 ==================================================
01:00:31 Project:1 Name:"Project 1" (owner=training_user)
01:00:31 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:00:31 Image:1 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:00:31 Image:12 Name:"New Image" (owner=training_user)
01:00:31 Image:2 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:7 Name:"New Dataset" (owner=training_user)
01:00:31 Project:7 Name:"Project 1" (owner=training_user)
01:00:31 Dataset:13 Name:"Dataset 1-1" (owner=training_user)
01:00:31 Image:13 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:14 Name:"Dataset 1-2" (owner=training_user)
01:00:31 Image:24 Name:"New Image" (owner=training_user)
01:00:31 Image:25 Name:"newImageFrom15" (owner=training_user)
01:00:31 Image:14 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:19 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:29 Name:"new Name 1" (owner=training_user)
01:00:31 Dataset:30 Name:"new Name 2" (owner=training_user)
01:00:31 Project:51 Name:"Project 1" (owner=training_user)
01:00:31 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
01:00:31 Image:551 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
01:00:31 Image:562 Name:"New Image" (owner=training_user)
01:00:31 Image:563 Name:"newImageFrom553" (owner=training_user)
01:00:31 Image:552 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:57 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:67 Name:"new Name 1" (owner=training_user)
01:00:31 Dataset:68 Name:"new Name 2" (owner=training_user)
01:00:31 Project:101 Name:"Project 1" (owner=training_user)
01:00:31 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
01:00:31 Image:601 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
01:00:31 Image:612 Name:"New Image" (owner=training_user)
01:00:31 Image:613 Name:"newImageFrom603" (owner=training_user)
01:00:31 Image:602 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:107 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:117 Name:"new Name 1" (owner=training_user)
01:00:31 Dataset:118 Name:"new Name 2" (owner=training_user)
01:00:31 Project:151 Name:"Project 1" (owner=training_user)
01:00:31 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
01:00:31 Image:651 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
01:00:31 Image:662 Name:"New Image" (owner=training_user)
01:00:31 Image:663 Name:"newImageFrom653" (owner=training_user)
01:00:31 Image:652 Name:"test.fake" (owner=training_user)
01:00:31 Dataset:157 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:167 Name:"new Name 1" (owner=training_user)
01:00:31 Dataset:168 Name:"new Name 2" (owner=training_user)
01:00:31
01:00:31 List orphaned Datasets:
01:00:31 ==================================================
01:00:31 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:00:31 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:00:31 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:00:31 Dataset:8 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:9 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:10 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:11 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:12 Name:"New Dataset2" (owner=training_user)
01:00:31 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user)
01:00:31 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user)
01:00:31 Dataset:17 Name:"Dataset 0" (owner=training_user-2)
01:00:31 Dataset:20 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:21 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:22 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:23 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:24 Name:"New Dataset2" (owner=training_user)
01:00:31 Dataset:25 Name:"FileAnnotationDelete" (owner=training_user)
01:00:31 Dataset:26 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:27 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:28 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
01:00:31 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
01:00:31 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
01:00:31 Dataset:58 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:59 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:60 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:61 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:62 Name:"New Dataset2" (owner=training_user)
01:00:31 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
01:00:31 Dataset:64 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:65 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:66 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
01:00:31 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
01:00:31 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
01:00:31 Dataset:108 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:109 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:110 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:111 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:112 Name:"New Dataset2" (owner=training_user)
01:00:31 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
01:00:31 Dataset:114 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:115 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:116 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
01:00:31 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
01:00:31 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
01:00:31 Dataset:158 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:159 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:160 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:161 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:162 Name:"New Dataset2" (owner=training_user)
01:00:31 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
01:00:31 Dataset:164 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:165 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:166 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user)
01:00:31 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user)
01:00:31 Dataset:205 Name:"Dataset 0" (owner=training_user-2)
01:00:31 Dataset:208 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:209 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:210 Name:"MyDataset" (owner=training_user)
01:00:31 Dataset:211 Name:"New Dataset" (owner=training_user)
01:00:31 Dataset:212 Name:"New Dataset2" (owner=training_user)
01:00:31 Dataset:253 Name:"Orphaned dataset 1" (owner=training_user)
01:00:31 Dataset:254 Name:"Orphaned dataset 2" (owner=training_user)
01:00:31 Dataset:255 Name:"Dataset 0" (owner=training_user-2)
01:00:31
01:00:31 Images in Dataset: 252
01:00:31 ==================================================
01:00:31 Image:752 Name:"test.fake" (owner=training_user)
01:00:31
01:00:31 Image:753
01:00:31 ==================================================
01:00:31 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:31 X: 512
01:00:31 Y: 512
01:00:31 Z: 5
01:00:31 C: 3
01:00:31 T: 10
01:00:31 Channel: 0 Color: (255, 0, 0)
01:00:31 Lookup table: None
01:00:31 Is reverse intensity? False
01:00:31 Channel: 1 Color: (0, 255, 0)
01:00:31 Lookup table: None
01:00:31 Is reverse intensity? False
01:00:31 Channel: 2 Color: (0, 0, 255)
01:00:31 Lookup table: None
01:00:31 Is reverse intensity? False
01:00:31 Pixel Size X: None
01:00:31
01:00:31 List Screens:
01:00:31 ==================================================
01:00:31 Screen:1 Name:"Screen" (owner=training_user)
01:00:31 Plate:1 Name:"Plate" (owner=training_user)
01:00:31 Plate:2 Name:"Plate Name 0" (owner=training_user)
01:00:31 Screen:4 Name:"Screen" (owner=training_user)
01:00:31 Plate:5 Name:"Plate" (owner=training_user)
01:00:31 Plate:6 Name:"Plate Name 0" (owner=training_user)
01:00:31 Screen:51 Name:"Screen" (owner=training_user)
01:00:31 Plate:51 Name:"Plate" (owner=training_user)
01:00:31 Plate:52 Name:"Plate Name 0" (owner=training_user)
01:00:31 Screen:101 Name:"Screen" (owner=training_user)
01:00:31 Plate:101 Name:"Plate" (owner=training_user)
01:00:31 Plate:102 Name:"Plate Name 0" (owner=training_user)
01:00:31 Screen:151 Name:"Screen" (owner=training_user)
01:00:31 Plate:151 Name:"Plate" (owner=training_user)
01:00:31 Plate:152 Name:"Plate Name 0" (owner=training_user)
01:00:31 Screen:201 Name:"Screen" (owner=training_user)
01:00:31 Plate:201 Name:"Plate" (owner=training_user)
01:00:31 Plate:202 Name:"Plate Name 0" (owner=training_user)
01:00:31 Screen:251 Name:"Screen" (owner=training_user)
01:00:31 Plate:251 Name:"Plate" (owner=training_user)
01:00:31 Plate:252 Name:"Plate Name 0" (owner=training_user)
01:00:31 Screen:2 Name:"Screen" (owner=training_user-2)
01:00:31 Screen:5 Name:"Screen" (owner=training_user-2)
01:00:31 Screen:52 Name:"Screen" (owner=training_user-2)
01:00:31 Screen:102 Name:"Screen" (owner=training_user-2)
01:00:31 Screen:152 Name:"Screen" (owner=training_user-2)
01:00:37 Screen:202 Name:"Screen" (owner=training_user-2)
01:00:37 Screen:252 Name:"Screen" (owner=training_user-2)
01:00:37
01:00:37 Plate:252
01:00:37 ==================================================
01:00:37
01:00:37 Number of fields: (0, 0)
01:00:37
01:00:37 Grid size: {'rows': 1, 'columns': 3}
01:00:37
01:00:37 Wells in Plate: Plate Name 0
01:00:37 Well: 0 0 Fields: 1
01:00:37 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 754
01:00:37 Well: 0 1 Fields: 1
01:00:37 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 755
01:00:37 Well: 0 2 Fields: 1
01:00:37 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 756
01:00:37 251 <class 'omero.model.MapAnnotationI'>
01:00:37 added by training_user
01:00:37 Image ID: 753
01:00:37 Annotation ID: 251
01:00:37 753
01:00:37 Channel rendering settings:
01:00:37 Name: 0
01:00:37 Color: FF0000
01:00:37 Active: True
01:00:37 Levels: 0.0 - 255.0
01:00:37 Name: 1
01:00:37 Color: 00FF00
01:00:37 Active: True
01:00:37 Levels: 0.0 - 255.0
01:00:37 Name: 2
01:00:37 Color: 0000FF
01:00:37 Active: True
01:00:37 Levels: 0.0 - 255.0
01:00:37 isGreyscaleRenderingModel: False
01:00:37 Default Z/T positions:
01:00:37 Z = 2, T = 0
01:00:37 Rendering Defs on Image:
01:00:37 ID: 353 (owner: training_user training_user)
01:00:37 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:00:37 ROI: ID: 252
01:00:37 Shape: id 321 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:00:37 Shape: id 322 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:00:37 ROI: ID: 253
01:00:37 Shape: id 323 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:00:37 ROI: ID: 254
01:00:37 Shape: id 324 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:00:37 ROI: ID: 255
01:00:37 Shape: id 325 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:00:37 ROI: ID: 256
01:00:37 <class 'omero.model.PolygonI'> Not supported by this code
01:00:37 Shape: id 326 theT 0 theZ 2 textValue test-Polygon
01:00:37 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:00:37 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:00:37 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:00:37 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:00:37 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:00:37 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:00:37 Removing Shape from ROI...
01:00:37 Deleting ROI: 257
01:00:37 Table Columns:
01:00:37 Uid
01:00:37 MyStringColumnInit
01:00:37 Row count: 10
01:00:37
01:00:37 Get All Data for rows: [3, 5, 7]
01:00:37 Data for Column: Uid
01:00:37 1
01:00:37 2
01:00:37 3
01:00:37 4
01:00:37 5
01:00:37 6
01:00:37 7
01:00:37 8
01:00:37 9
01:00:37 10
01:00:37 Data for Column: MyStringColumnInit
01:00:37 one
01:00:37 two
01:00:37 three
01:00:37 four
01:00:37 five
01:00:37 six
01:00:37 seven
01:00:37 eight
01:00:37 nine
01:00:37 ten
01:00:37
01:00:37 Get All Data for rows with slice: [3, 5, 7]
01:00:37 Data for Column: Uid
01:00:37 4
01:00:37 6
01:00:37 8
01:00:37 Data for Column: MyStringColumnInit
01:00:37 four
01:00:37 six
01:00:37 eight
01:00:37
01:00:37 Get Data for cols: [1] and between rows: 3 - 7
01:00:37 Data for Column: MyStringColumnInit
01:00:37 four
01:00:37 five
01:00:37 six
01:00:37 seven
01:00:37
01:00:37 Get Data for cols: [1] and between rows: 3 - 7 with slice
01:00:37 Data for Column: MyStringColumnInit
01:00:37 four
01:00:37 five
01:00:37 six
01:00:37 seven
01:00:37 Query Results for Column: Uid
01:00:37 3
01:00:37 4
01:00:37 5
01:00:37 6
01:00:37 7
01:00:37 8
01:00:37 Query Results for Column: MyStringColumnInit
01:00:37 three
01:00:37 four
01:00:37 five
01:00:37 six
01:00:37 seven
01:00:37 eight
01:00:37 Opened table with row-count: 10
01:00:37 New dataset, Id: 257
01:00:37 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
01:00:37 255 <class 'omero.model.TagAnnotationI'> added by training_user
01:00:37 Tag value: New Tag
01:00:37 256 <class 'omero.model.MapAnnotationI'> added by training_user
01:00:37
01:00:37 Creating an OriginalFile and FileAnnotation
01:00:37 Attaching FileAnnotation to Dataset: File ID: 257 , README.txt Size: 15
01:00:37
01:00:37 Annotations on Dataset: New Dataset
01:00:37 File ID: 803 README.txt Size: 15
01:00:37
01:00:37 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
01:00:37 File downloaded!
01:00:37 107 README.txt
01:00:37 7 README.txt
01:00:37 257 README.txt
01:00:37 207 README.txt
01:00:37 57 README.txt
01:00:37 157 README.txt
01:00:37 20 README.txt
01:00:37 Found Annotation with namespace: imperial.training.demo
01:00:37 Plane: 0 0 0
01:00:37 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
01:00:37 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
01:00:37
01:00:37 List Datasets:
01:00:37 ID: 260 Name: MyDataset
01:00:37 ID: 259 Name: MyDataset
01:00:37 ID: 258 Name: MyDataset
01:00:37 ID: 210 Name: MyDataset
01:00:37 ID: 209 Name: MyDataset
01:00:37 ID: 208 Name: MyDataset
01:00:37 ID: 166 Name: MyDataset
01:00:37 ID: 165 Name: MyDataset
01:00:37 ID: 164 Name: MyDataset
01:00:37 ID: 160 Name: MyDataset
01:00:37 ID: 159 Name: MyDataset
01:00:37 ID: 158 Name: MyDataset
01:00:37 ID: 116 Name: MyDataset
01:00:37 ID: 115 Name: MyDataset
01:00:37 ID: 114 Name: MyDataset
01:00:37 ID: 110 Name: MyDataset
01:00:37 ID: 109 Name: MyDataset
01:00:37 ID: 108 Name: MyDataset
01:00:37 ID: 66 Name: MyDataset
01:00:37 ID: 65 Name: MyDataset
01:00:37 ID: 64 Name: MyDataset
01:00:37 ID: 60 Name: MyDataset
01:00:37 ID: 59 Name: MyDataset
01:00:37 ID: 58 Name: MyDataset
01:00:37 ID: 28 Name: MyDataset
01:00:37 ID: 27 Name: MyDataset
01:00:37 ID: 26 Name: MyDataset
01:00:37 ID: 22 Name: MyDataset
01:00:37 ID: 21 Name: MyDataset
01:00:37 ID: 20 Name: MyDataset
01:00:37 ID: 10 Name: MyDataset
01:00:37 ID: 9 Name: MyDataset
01:00:37 ID: 8 Name: MyDataset
01:00:37
01:00:37 List Tags:
01:00:37 ID: 8 Text: MyTag Desc: MyTag 0
01:00:37 ID: 9 Text: MyTag Desc: MyTag 1
01:00:37 ID: 10 Text: MyTag Desc: MyTag 2
01:00:37 ID: 21 Text: MyTag Desc: MyTag 0
01:00:37 ID: 22 Text: MyTag Desc: MyTag 1
01:00:37 ID: 23 Text: MyTag Desc: MyTag 2
01:00:37 ID: 29 Text: MyTag Desc: MyTag 0
01:00:37 ID: 30 Text: MyTag Desc: MyTag 1
01:00:37 ID: 31 Text: MyTag Desc: MyTag 2
01:00:37 ID: 58 Text: MyTag Desc: MyTag 0
01:00:37 ID: 59 Text: MyTag Desc: MyTag 1
01:00:37 ID: 60 Text: MyTag Desc: MyTag 2
01:00:37 ID: 66 Text: MyTag Desc: MyTag 0
01:00:37 ID: 67 Text: MyTag Desc: MyTag 1
01:00:37 ID: 68 Text: MyTag Desc: MyTag 2
01:00:37 ID: 108 Text: MyTag Desc: MyTag 0
01:00:37 ID: 109 Text: MyTag Desc: MyTag 1
01:00:37 ID: 110 Text: MyTag Desc: MyTag 2
01:00:37 ID: 116 Text: MyTag Desc: MyTag 0
01:00:37 ID: 117 Text: MyTag Desc: MyTag 1
01:00:37 ID: 118 Text: MyTag Desc: MyTag 2
01:00:37 ID: 158 Text: MyTag Desc: MyTag 0
01:00:37 ID: 159 Text: MyTag Desc: MyTag 1
01:00:37 ID: 160 Text: MyTag Desc: MyTag 2
01:00:37 ID: 166 Text: MyTag Desc: MyTag 0
01:00:37 ID: 167 Text: MyTag Desc: MyTag 1
01:00:37 ID: 168 Text: MyTag Desc: MyTag 2
01:00:37 ID: 208 Text: MyTag Desc: MyTag 0
01:00:37 ID: 209 Text: MyTag Desc: MyTag 1
01:00:37 ID: 210 Text: MyTag Desc: MyTag 2
01:00:37 ID: 258 Text: MyTag Desc: MyTag 0
01:00:37 ID: 259 Text: MyTag Desc: MyTag 1
01:00:37 ID: 260 Text: MyTag Desc: MyTag 2
01:00:37 New dataset, Id: 261
01:00:37 New dataset 2, Id: 262
01:00:37 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:37 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
01:00:37 [[ 0 0 0 ... 102 103 104]
01:00:37 [ 0 0 0 ... 102 103 104]
01:00:37 [ 0 0 0 ... 102 103 104]
01:00:37 ...
01:00:37 [ 5 6 7 ... 102 103 104]
01:00:37 [ 5 6 7 ... 102 103 104]
01:00:37 [ 5 6 7 ... 102 103 104]]
01:00:37 shape: (100, 100)
01:00:37 min: 0 max: 104 pixel type: uint8
01:00:37 Average : 53.9125
01:00:37 Getting data for T, tile: 0 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 1 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 2 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 3 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 4 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 5 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 6 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 7 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 8 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 9 (256, 0, 10, 512)
01:00:37 kymograph_data (512, 100)
01:00:37 Attaching kymograph.png to image
01:00:37 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:37 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
01:00:37 [[ 0 0 0 ... 102 103 104]
01:00:37 [ 0 0 0 ... 102 103 104]
01:00:37 [ 0 0 0 ... 102 103 104]
01:00:37 ...
01:00:37 [ 5 6 7 ... 102 103 104]
01:00:37 [ 5 6 7 ... 102 103 104]
01:00:37 [ 5 6 7 ... 102 103 104]]
01:00:37 shape: (100, 100)
01:00:37 min: 0 max: 104 pixel type: uint8
01:00:37 Average : 53.9125
01:00:37 Getting data for T, tile: 0 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 1 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 2 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 3 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 4 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 5 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 6 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 7 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 8 (256, 0, 10, 512)
01:00:37 Getting data for T, tile: 9 (256, 0, 10, 512)
01:00:37 kymograph_data (512, 100)
01:00:37 Attaching kymograph.png to image
01:00:37 No file downloaded. Project not rated.
01:00:37 New image, Id: 762
01:00:37 Starting at: http://nginx/web/api/
01:00:37 CSRF token MxQyo1KerUcH1VCdtQbw4fYFzowi2M9e
01:00:37 Servers:
01:00:37 -id: 1
01:00:37 name: omero
01:00:37 host: omero
01:00:37 port: 4064
01:00:37 -id: 2
01:00:37 name: testintegration
01:00:39 host: testintegration
01:00:39 port: 14064
01:00:39 eventContext {'sessionId': 718, 'sessionUuid': '8a9be4d2-f302-4b20-b71d-3eceb5a1c7da', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
01:00:39 Projects:
01:00:39 2 Project 0
01:00:39 3 Project 0
01:00:39 Created Project: 256 API TEST foo
01:00:39 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 256, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/256/datasets/'}}
01:00:39 !! 01/04/26 01:00:39.569 error: communicator not destroyed during global destruction.+ deactivate
01:00:39 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:00:39 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:00:39 + export PATH
01:00:39 + unset _OLD_VIRTUAL_PATH
01:00:39 + '[' -n '' ']'
01:00:39 + hash -r
01:00:39 + '[' -n '' ']'
01:00:39 + unset VIRTUAL_ENV
01:00:39 + unset VIRTUAL_ENV_PROMPT
01:00:39 + '[' '!' '' = nondestructive ']'
01:00:39 + unset -f deactivate
01:00:39 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
01:00:39 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
01:00:41 Note: Some input files use unchecked or unsafe operations.
01:00:41 Note: Recompile with -Xlint:unchecked for details.
01:00:41 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
01:00:41 Error: LinkageError occurred while loading main class training.Setup
01:00:41 java.lang.UnsupportedClassVersionError: training/Setup has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
01:00:41 Build step 'Execute shell' marked build as failure
01:00:41 Finished: FAILURE
