10:52:08 Started by upstream project "Trigger" build number 14
10:52:08 originally caused by:
10:52:08 Started by user devspace
10:52:08 Running as SYSTEM
10:52:08 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
10:52:08 [OMERO-training] $ /bin/bash -xe /tmp/jenkins4255718067836636802.sh
10:52:08 + rm -rf /home/omero/workspace/OMERO-training/.venv3
10:53:39 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
10:53:57 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
10:53:57 ++ deactivate nondestructive
10:53:57 ++ '[' -n '' ']'
10:53:57 ++ '[' -n '' ']'
10:53:57 ++ hash -r
10:53:57 ++ '[' -n '' ']'
10:53:57 ++ unset VIRTUAL_ENV
10:53:57 ++ unset VIRTUAL_ENV_PROMPT
10:53:57 ++ '[' '!' nondestructive = nondestructive ']'
10:53:57 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
10:53:57 ++ export VIRTUAL_ENV
10:53:57 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:53:57 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:53:57 ++ export PATH
10:53:57 ++ '[' -n '' ']'
10:53:57 ++ '[' -z '' ']'
10:53:57 ++ _OLD_VIRTUAL_PS1=
10:53:57 ++ PS1='(.venv3) '
10:53:57 ++ export PS1
10:53:57 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:53:57 ++ export VIRTUAL_ENV_PROMPT
10:53:57 ++ hash -r
10:53:57 + pip install -U pip setuptools
10:53:59 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
10:53:59 Collecting pip
10:53:59 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
10:53:59 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
10:53:59 Collecting setuptools
10:53:59 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB)
10:53:59 Installing collected packages: setuptools, pip
10:53:59 Attempting uninstall: setuptools
10:53:59 Found existing installation: setuptools 65.5.1
10:54:00 Uninstalling setuptools-65.5.1:
10:54:00 Successfully uninstalled setuptools-65.5.1
10:54:11 Attempting uninstall: pip
10:54:11 Found existing installation: pip 22.3.1
10:54:12 Uninstalling pip-22.3.1:
10:54:12 Successfully uninstalled pip-22.3.1
10:54:25 Successfully installed pip-26.1.2 setuptools-83.0.0
10:54:25 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
10:54:26 Collecting zeroc-ice==3.6.5
10:54:26 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:54:28 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 14.0 MB/s 0:00:02
10:54:29 Installing collected packages: zeroc-ice
10:54:32 Successfully installed zeroc-ice-3.6.5
10:54:32 + pip install markdown
10:54:33 Collecting markdown
10:54:33 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
10:54:33 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
10:54:33 Installing collected packages: markdown
10:54:34 Successfully installed markdown-3.10.2
10:54:34 + pip install mox3 pytest 'pytest-xdist<2'
10:54:35 Collecting mox3
10:54:35 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
10:54:35 Collecting pytest
10:54:35 Using cached pytest-9.1.1-py3-none-any.whl.metadata (7.6 kB)
10:54:35 Collecting pytest-xdist<2
10:54:35 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
10:54:35 Collecting execnet>=1.1 (from pytest-xdist<2)
10:54:35 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
10:54:35 Collecting pytest-forked (from pytest-xdist<2)
10:54:35 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
10:54:35 Collecting six (from pytest-xdist<2)
10:54:35 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
10:54:35 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
10:54:35 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
10:54:35 Collecting fixtures>=3.0.0 (from mox3)
10:54:35 Using cached fixtures-4.3.2-py3-none-any.whl.metadata (22 kB)
10:54:35 Collecting iniconfig>=1.0.1 (from pytest)
10:54:35 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
10:54:35 Collecting packaging>=22 (from pytest)
10:54:35 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
10:54:35 Collecting pluggy<2,>=1.5 (from pytest)
10:54:35 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
10:54:36 Collecting pygments>=2.7.2 (from pytest)
10:54:36 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
10:54:36 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (83.0.0)
10:54:36 Collecting py (from pytest-forked->pytest-xdist<2)
10:54:36 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
10:54:36 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
10:54:36 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
10:54:36 Using cached pytest-9.1.1-py3-none-any.whl (386 kB)
10:54:36 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
10:54:36 Using cached execnet-2.1.2-py3-none-any.whl (40 kB)
10:54:36 Using cached fixtures-4.3.2-py3-none-any.whl (41 kB)
10:54:36 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
10:54:36 Using cached packaging-26.2-py3-none-any.whl (100 kB)
10:54:36 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB)
10:54:36 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
10:54:36 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
10:54:36 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
10:54:36 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
10:54:36 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
10:54:51
10:54:51 Successfully installed execnet-2.1.2 fixtures-4.3.2 iniconfig-2.3.0 mox3-1.1.0 packaging-26.2 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.20.0 pytest-9.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
10:54:51 + pip install tables
10:54:52 Collecting tables
10:54:52 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
10:54:52 Collecting numpy>=1.20.0 (from tables)
10:54:52 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
10:54:52 Collecting numexpr>=2.6.2 (from tables)
10:54:52 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
10:54:52 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (26.2)
10:54:52 Collecting py-cpuinfo (from tables)
10:54:52 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
10:54:52 Collecting blosc2>=2.3.0 (from tables)
10:54:52 Using cached blosc2-4.8.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
10:54:52 Collecting ndindex (from blosc2>=2.3.0->tables)
10:54:52 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
10:54:52 Collecting msgpack (from blosc2>=2.3.0->tables)
10:54:52 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
10:54:53 Collecting pydantic (from blosc2>=2.3.0->tables)
10:54:53 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
10:54:53 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
10:54:53 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
10:54:53 Collecting rich (from blosc2>=2.3.0->tables)
10:54:53 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
10:54:53 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
10:54:53 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
10:54:53 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
10:54:53 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
10:54:53 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
10:54:53 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
10:54:53 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached h2-4.3.0-py3-none-any.whl.metadata (5.1 kB)
10:54:53 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
10:54:53 Collecting hpack<5,>=4.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
10:54:53 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
10:54:53 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
10:54:53 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
10:54:53 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
10:54:53 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
10:54:54 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
10:54:54 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
10:54:54 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
10:54:54 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
10:54:54 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
10:54:54 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
10:54:54 Requirement already satisfied: pygments<3.0.0,>=2.13.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (2.20.0)
10:54:54 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
10:54:54 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
10:54:54 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
10:54:54 Using cached blosc2-4.8.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB)
10:54:54 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
10:54:54 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
10:54:54 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
10:54:54 Using cached h2-4.3.0-py3-none-any.whl (61 kB)
10:54:54 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
10:54:54 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
10:54:54 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
10:54:54 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
10:54:54 Using cached anyio-4.14.2-py3-none-any.whl (125 kB)
10:54:54 Using cached idna-3.18-py3-none-any.whl (65 kB)
10:54:54 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
10:54:54 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
10:54:54 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
10:54:54 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
10:54:54 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
10:54:54 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
10:54:54 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
10:54:54 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
10:54:54 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
10:54:54 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
10:54:54 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
10:54:54 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
10:54:54 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
10:54:55 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
10:55:34
10:55:34 Successfully installed annotated-types-0.7.0 anyio-4.14.2 blosc2-4.8.0 certifi-2026.6.17 h11-0.16.0 h2-4.3.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
10:55:34 + pip install jinja2
10:55:35 Collecting jinja2
10:55:35 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
10:55:35 Collecting MarkupSafe>=2.0 (from jinja2)
10:55:35 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
10:55:35 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
10:55:35 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
10:55:36 Installing collected packages: MarkupSafe, jinja2
10:55:37
10:55:37 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
10:55:37 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
10:55:45 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 8
10:55:48 Copied 2 artifacts from "OMERO-build" build number 9
10:55:48 Copied 2 artifacts from "OMERO-build-build" build number 16
10:55:48 [OMERO-training] $ /bin/bash -xe /tmp/jenkins8440683110338846176.sh
10:55:48 + source /home/settings.env
10:55:48 ++ OMERO_DB_HOST=pg
10:55:48 ++ OMERO_DB_USER=postgres
10:55:48 ++ OMERO_DB_PASS=
10:55:48 ++ OMERO_ROOT_PASS=omero
10:55:48 ++ OMERO_DATA_DIR=/OMERO
10:55:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:55:48 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
10:55:48 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
10:55:48 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
10:55:48 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
10:55:48 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
10:55:48 ++ ls openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:55:48 + ZIP=openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:55:48 + DIST=openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9
10:55:48 + unzip -n openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:55:48 Archive: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:55:49 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.classpath-template
10:55:49 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.github/
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.github/Pull_Request_Template.md
10:55:49 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.github/workflows/
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.github/workflows/docker_build.yml
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.github/workflows/release.yml
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.github/workflows/source_build.yml
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.github/workflows/update.yaml
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.mailmap
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/.project
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/CMakeLists.txt
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/CONTRIBUTING.md
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/Dockerfile
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/LICENSE.txt
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/README.md
10:55:49 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/SUPPORT.md
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10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/ncsa_paledit/phase.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/ncsa_paledit/royal.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/ncsa_paledit/sepia.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/ncsa_paledit/smart.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/ncsa_paledit/thal.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/ncsa_paledit/thallium.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/ncsa_paledit/unionjack.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/physics.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/red-green.lut
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/seaborn/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/seaborn/mako.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/seaborn/rocket.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/spectrum.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/thermal.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/turbo.lut
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/cyan_hot.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/green_fire_blue.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/hilo.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/ica.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/ica2.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/ica3.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/magenta_hot.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/orange_hot.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/rainbow_rgb.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/red_hot.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/luts/wcif/yellow_hot.lut
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/omero.class
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/setup.cfg
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/README.txt
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/misc/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/misc/Makefile
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/misc/current.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/misc/enums.py
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__1/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__1/OMERO3__7.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__10/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__10/OMERO3A__9.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__11/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__11/OMERO3A__10.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__11/OMERO3A__5.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__2/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__2/OMERO3A__1.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__3/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__3/OMERO3A__2.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__3/OMERO3__5.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__4/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__4/OMERO3A__3.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__4/OMERO3__5.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__5/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__5/OMERO3A__4.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__6/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__6/OMERO3A__5.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__7/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__7/OMERO3A__6.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__8/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__8/OMERO3A__6.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__9/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__9/OMERO3A__8.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__4/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__4/OMERO3__1.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__5/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__5/OMERO3__4.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__6/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__6/OMERO3__5.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__7/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__7/OMERO3__6.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.1__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.1__0/OMERO4__0.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/t/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.3__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.4__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4__0/OMERO3A__11.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.0__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.2__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__1/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__2/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__3/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:56:00 creating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:56:00 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/psql-footer.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/psql-header.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/schema.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/views.sql
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/test.xml
10:56:01 inflating: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/update_dependencies.sh
10:56:01 extracting: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/components/antlib/resources/gitversion.xml
10:56:01 extracting: openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9/components/tools/OmeroCpp/cmake/GitVersion.cmake
10:56:01 + rm -f openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:56:01 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-614-8dd2d4ecba-ice36-b9 /home/omero/workspace/OMERO-training/openmicroscopy
10:56:01 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
10:56:01 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
10:56:01 ++ ls OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:56:01 + ZIP=OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:56:01 + DIST=OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9
10:56:01 + unzip -n OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:56:01 Archive: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/etc/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/etc/blitz/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/etc/grid/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/etc/profiles/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/etc/templates/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/etc/templates/error/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/etc/templates/grid/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/client/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/luts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/luts/janelia/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/luts/matplotlib/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/luts/ncsa_paledit/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/luts/seaborn/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/luts/wcif/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/omero/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/omero/analysis_scripts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/omero/annotation_scripts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/omero/export_scripts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/omero/figure_scripts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/omero/import_scripts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/scripts/omero/util_scripts/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/
10:56:01 creating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/
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10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/spring-orm.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/spring-security-core.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/spring-security-ldap.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/spring-tx.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/sqlite-jdbc.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/subethasmtp.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/turbojpeg.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/uzaygezen-core.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/xalan.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/xercesImpl.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/xml-apis-ext.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/xml-apis.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/xmlgraphics-commons.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/xmpcore.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/lib/server/xpp3.jar
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/README
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/agpl.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/antlr.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/apache-v1.1.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/apache-v2.0.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/asm.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/bouncy_castle_license.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/bsd.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/cddl-v1.0.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/cpl-v10.html
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/crystalclear.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/django.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/dom4j.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/epl-v1.0.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/fbsd.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/freemarker.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/gpl-v2.0.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/gpl.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/gtest.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/iconsweets_license.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/jamon.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/jmock.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/jquery.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/jtidy.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/lgpl-3.0.txt
10:56:14 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/lgpl-v2.0.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/lgpl-v2.1.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/lgpl-v3.0.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/lgpl.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/matplotlib.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/mit.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/mpl-v1_0.htm
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/npl-1_1.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/path.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/pil.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/postgresql.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/psf-v2.0.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/psf-v2.5.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/scons.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/slf4j.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/tablelayout.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/which.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/zlib-libpng.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/share/licenses/zpl-v2.1.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/README.txt
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/misc/Makefile
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/misc/current.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/misc/enums.py
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__1/OMERO3__7.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__10/OMERO3A__9.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__11/OMERO3A__10.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__11/OMERO3A__5.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__2/OMERO3A__1.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__3/OMERO3A__2.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__3/OMERO3__5.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__4/OMERO3A__3.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__4/OMERO3__5.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__5/OMERO3A__4.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__6/OMERO3A__5.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__7/OMERO3A__6.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__8/OMERO3A__6.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3A__9/OMERO3A__8.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__4/OMERO3__1.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__5/OMERO3__4.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__6/OMERO3__5.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO3__7/OMERO3__6.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.1__0/OMERO4__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO4__0/OMERO3A__11.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/psql-footer.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/psql-header.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/schema.sql
10:56:15 inflating: OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9/sql/psql/OMERO5.4__0/views.sql
10:56:16 + rm -f OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9.zip
10:56:16 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-614-8dd2d4ecba-ice36-b9 /home/omero/workspace/OMERO-training/OMERO.server
10:56:16 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
10:56:16 ++ deactivate nondestructive
10:56:16 ++ '[' -n '' ']'
10:56:16 ++ '[' -n '' ']'
10:56:16 ++ hash -r
10:56:16 ++ '[' -n '' ']'
10:56:16 ++ unset VIRTUAL_ENV
10:56:16 ++ unset VIRTUAL_ENV_PROMPT
10:56:16 ++ '[' '!' nondestructive = nondestructive ']'
10:56:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
10:56:16 ++ export VIRTUAL_ENV
10:56:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:56:16 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:56:16 ++ export PATH
10:56:16 ++ '[' -n '' ']'
10:56:16 ++ '[' -z '' ']'
10:56:16 ++ _OLD_VIRTUAL_PS1=
10:56:16 ++ PS1='(.venv3) '
10:56:16 ++ export PS1
10:56:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:56:16 ++ export VIRTUAL_ENV_PROMPT
10:56:16 ++ hash -r
10:56:16 + for x in *.gz
10:56:16 + pip install omero_dropbox-5.7.1.dev0.tar.gz
10:56:16 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:56:16 Installing build dependencies: started
10:56:18 Installing build dependencies: finished with status 'done'
10:56:18 Getting requirements to build wheel: started
10:56:18 Getting requirements to build wheel: finished with status 'done'
10:56:18 Preparing metadata (pyproject.toml): started
10:56:18 Preparing metadata (pyproject.toml): finished with status 'done'
10:56:18 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
10:56:18 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
10:56:18 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
10:56:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:56:18 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
10:56:18 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
10:56:18 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
10:56:19 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
10:56:19 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
10:56:19 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
10:56:19 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
10:56:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:56:19 Collecting requests (from omero-py->omero-dropbox==5.7.1.dev0)
10:56:19 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
10:56:19 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
10:56:19 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
10:56:19 Collecting charset_normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
10:56:19 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
10:56:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
10:56:19 Collecting urllib3<3,>=1.26 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
10:56:19 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
10:56:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
10:56:19 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
10:56:19 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
10:56:19 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:56:19 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:56:19 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
10:56:19 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
10:56:19 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
10:56:19 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
10:56:19 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
10:56:19 Building wheels for collected packages: omero-dropbox
10:56:19 Building wheel for omero-dropbox (pyproject.toml): started
10:56:20 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:56:20 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=f034c9f133a79155eea6e9029b1e7e0202f2fd0145b122571ad73dacc9c81cb1
10:56:20 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
10:56:20 Successfully built omero-dropbox
10:56:20 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, future, charset_normalizer, requests, omero-py, omero-dropbox
10:56:46
10:56:46 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 charset_normalizer-3.4.9 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0
10:56:46 + for x in *.gz
10:56:46 + pip install omero_marshal-0.9.2.dev0.tar.gz
10:56:47 Processing ./omero_marshal-0.9.2.dev0.tar.gz
10:56:47 Installing build dependencies: started
10:56:48 Installing build dependencies: finished with status 'done'
10:56:48 Getting requirements to build wheel: started
10:56:49 Getting requirements to build wheel: finished with status 'done'
10:56:49 Preparing metadata (pyproject.toml): started
10:56:49 Preparing metadata (pyproject.toml): finished with status 'done'
10:56:49 Building wheels for collected packages: omero_marshal
10:56:49 Building wheel for omero_marshal (pyproject.toml): started
10:56:49 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:56:49 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=6870e71cac865da571f966892990c5db58b41429c57a25d86db664ec05e77b35
10:56:49 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
10:56:49 Successfully built omero_marshal
10:56:49 Installing collected packages: omero_marshal
10:56:52 Successfully installed omero_marshal-0.9.2.dev0
10:56:52 + for x in *.gz
10:56:52 + pip install omero_py-5.22.2.dev0.tar.gz
10:56:53 Processing ./omero_py-5.22.2.dev0.tar.gz
10:56:53 Installing build dependencies: started
10:56:54 Installing build dependencies: finished with status 'done'
10:56:54 Getting requirements to build wheel: started
10:56:55 Getting requirements to build wheel: finished with status 'done'
10:56:55 Preparing metadata (pyproject.toml): started
10:56:55 Preparing metadata (pyproject.toml): finished with status 'done'
10:56:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
10:56:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
10:56:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
10:56:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
10:56:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
10:56:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
10:56:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
10:56:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
10:56:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
10:56:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
10:56:55 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
10:56:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
10:56:55 Building wheels for collected packages: omero-py
10:56:55 Building wheel for omero-py (pyproject.toml): started
10:56:56 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:56:56 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=e6cf06fd31b8e07be351df7e461b68853c2cd831b226a508f4a8adbcbd7d69be
10:56:56 Stored in directory: /home/omero/.cache/pip/wheels/67/6d/a0/54908d8e3aee8366415fea8426f418a6717addeb1669d2e673
10:56:56 Successfully built omero-py
10:56:56 Installing collected packages: omero-py
10:56:56 Attempting uninstall: omero-py
10:56:56 Found existing installation: omero-py 5.22.1
10:56:57 Uninstalling omero-py-5.22.1:
10:57:04 Successfully uninstalled omero-py-5.22.1
10:57:20 Successfully installed omero-py-5.22.2.dev0
10:57:21 + for x in *.gz
10:57:21 + pip install omero_scripts-5.10.1.dev0.tar.gz
10:57:21 Processing ./omero_scripts-5.10.1.dev0.tar.gz
10:57:22 Installing build dependencies: started
10:57:23 Installing build dependencies: finished with status 'done'
10:57:23 Getting requirements to build wheel: started
10:57:23 Getting requirements to build wheel: finished with status 'done'
10:57:23 Preparing metadata (pyproject.toml): started
10:57:24 Preparing metadata (pyproject.toml): finished with status 'done'
10:57:24 Building wheels for collected packages: omero-scripts
10:57:24 Building wheel for omero-scripts (pyproject.toml): started
10:57:24 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:57:24 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=31236f81c02ba52a52ea19099d4fbbf48b9ae1b45f4a29d8d808cb16985a3969
10:57:24 Stored in directory: /home/omero/.cache/pip/wheels/88/2f/31/9478f1cef9d86ee7a706f3c8d94d67d22081ff846c64d43aa0
10:57:24 Successfully built omero-scripts
10:57:24 Installing collected packages: omero-scripts
10:57:25 Successfully installed omero-scripts-5.10.1.dev0
10:57:25 + for x in *.gz
10:57:25 + pip install omero_web-5.32.1.dev0.tar.gz
10:57:26 Processing ./omero_web-5.32.1.dev0.tar.gz
10:57:26 Installing build dependencies: started
10:57:27 Installing build dependencies: finished with status 'done'
10:57:27 Getting requirements to build wheel: started
10:57:28 Getting requirements to build wheel: finished with status 'done'
10:57:28 Preparing metadata (pyproject.toml): started
10:57:28 Preparing metadata (pyproject.toml): finished with status 'done'
10:57:28 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
10:57:28 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
10:57:28 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
10:57:28 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
10:57:28 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
10:57:28 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
10:57:28 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
10:57:29 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
10:57:29 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:57:29 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
10:57:29 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
10:57:29 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
10:57:29 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
10:57:29 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
10:57:29 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
10:57:29 Collecting pytz (from omero-web==5.32.1.dev0)
10:57:29 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
10:57:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
10:57:29 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
10:57:29 Collecting importlib-resources (from omero-web==5.32.1.dev0)
10:57:29 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
10:57:29 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
10:57:29 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
10:57:29 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
10:57:29 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
10:57:29 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (83.0.0)
10:57:29 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
10:57:29 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
10:57:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
10:57:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
10:57:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
10:57:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
10:57:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
10:57:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
10:57:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
10:57:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
10:57:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
10:57:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
10:57:29 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:57:29 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
10:57:29 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
10:57:29 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
10:57:29 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
10:57:29 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
10:57:29 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
10:57:29 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
10:57:29 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
10:57:29 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
10:57:29 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
10:57:29 Building wheels for collected packages: omero-web
10:57:29 Building wheel for omero-web (pyproject.toml): started
10:57:30 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:57:31 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=3a7b8132dad154a5da8922f7a9efd60a27d732977cb1f0c1bdeffb817ce780a9
10:57:31 Stored in directory: /home/omero/.cache/pip/wheels/91/ad/79/ec318377d2e814ec25bf29bc612d81f9a885cbc4aa52a338d5
10:57:31 Successfully built omero-web
10:57:31 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
10:58:39
10:58:39 Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
10:58:39 + cd /home/omero/workspace/OMERO-training/OMERO.server
10:58:39 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
10:58:39 + HOSTNAME=33b02994ca12
10:58:39 + PORT=4064
10:58:39 + WEBHOST=http://nginx/web
10:58:39 + SERVER_NAME=omero
10:58:39 + ROOT_PASSWORD=omero
10:58:39 + GROUP_NAME=training_group
10:58:39 + GROUP_NAME_2=training_group-2
10:58:39 + USER_NAME=training_user
10:58:39 + USER_NAME_2=training_user-2
10:58:39 + LIGHTADMIN_USER_NAME=ladmin_user
10:58:39 + USER_PASSWORD=ome
10:58:39 + CONFIG_FILENAME=training_ice.config
10:58:39 + omero login root@33b02994ca12:4064 -w omero
10:58:42 Created session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:42 + omero group add training_group --type read-only --ignore-existing
10:58:43 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:43 Group exists: training_group (id=3)
10:58:44 + omero group add training_group-2 --type read-only --ignore-existing
10:58:45 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:45 Group exists: training_group-2 (id=4)
10:58:46 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
10:58:47 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:47 User exists: training_user (id=2)
10:58:48 + omero user joingroup --name training_user --group-name training_group training_group-2
10:58:49 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:49 2 is already in group 3
10:58:49 2 is already in group 4
10:58:50 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
10:58:51 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:51 User exists: training_user-2 (id=3)
10:58:51 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
10:58:53 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:53 3 is already in group 3
10:58:53 3 is already in group 4
10:58:53 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
10:58:55 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:55 User exists: ladmin_user (id=4)
10:58:55 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
10:58:57 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:57 4 is already in group 3
10:58:57 4 is already in group 4
10:58:57 ++ omero user info ladmin_user --style plain
10:58:57 ++ cut -d, -f1
10:58:59 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:58:59 + id=4
10:58:59 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
10:59:00 Using session for root@33b02994ca12:4064. Idle timeout: 10 min. Current group: system
10:59:00 Experimenter:4
10:59:01 + omero logout
10:59:02 + touch test.fake
10:59:02 + omero login training_user@33b02994ca12:4064 -w ome -g training_group
10:59:04 Created session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:04 + nProjects=1
10:59:04 + nDatasets=2
10:59:04 + echo 'Creating projects and datasets'
10:59:04 Creating projects and datasets
10:59:04 + (( i=1 ))
10:59:04 + (( i<=1 ))
10:59:04 ++ omero obj new Project 'name=Project 1'
10:59:06 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:06 + project=Project:201
10:59:06 + (( j=1 ))
10:59:06 + (( j<=2 ))
10:59:06 ++ omero obj new Dataset 'name=Dataset 1-1'
10:59:08 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:09 + dataset=Dataset:201
10:59:09 + omero obj new ProjectDatasetLink parent=Project:201 child=Dataset:201
10:59:11 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:11 ProjectDatasetLink:201
10:59:11 + echo 'Importing image into dataset'
10:59:11 Importing image into dataset
10:59:11 + omero import -d Dataset:201 test.fake --debug ERROR
10:59:13 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:14 2026-07-14 10:59:14,481 269 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
10:59:14 2026-07-14 10:59:14,501 289 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
10:59:20 Image:201
10:59:20 Other imported objects:
10:59:20 Fileset:201
10:59:20
10:59:20 ==> Summary
10:59:20 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.714
10:59:20 + (( j++ ))
10:59:20 + (( j<=2 ))
10:59:20 ++ omero obj new Dataset 'name=Dataset 1-2'
10:59:23 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:24 + dataset=Dataset:202
10:59:24 + omero obj new ProjectDatasetLink parent=Project:201 child=Dataset:202
10:59:26 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:26 ProjectDatasetLink:202
10:59:26 + echo 'Importing image into dataset'
10:59:26 Importing image into dataset
10:59:26 + omero import -d Dataset:202 test.fake --debug ERROR
10:59:28 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:29 2026-07-14 10:59:29,413 224 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
10:59:29 2026-07-14 10:59:29,427 238 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
10:59:33 Image:202
10:59:33 Other imported objects:
10:59:33 Fileset:202
10:59:33
10:59:33 ==> Summary
10:59:33 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.571
10:59:33 + (( j++ ))
10:59:33 + (( j<=2 ))
10:59:33 + (( i++ ))
10:59:33 + (( i<=1 ))
10:59:33 + (( j=1 ))
10:59:33 + (( j<=2 ))
10:59:33 + omero obj new Dataset 'name=Orphaned dataset 1'
10:59:36 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:36 Dataset:203
10:59:36 + (( j++ ))
10:59:36 + (( j<=2 ))
10:59:36 + omero obj new Dataset 'name=Orphaned dataset 2'
10:59:38 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:38 Dataset:204
10:59:38 + (( j++ ))
10:59:38 + (( j<=2 ))
10:59:38 + echo 'Importing image file'
10:59:38 Importing image file
10:59:38 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:59:38 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
10:59:45 ++ sed -n -e 's/^Image://p' image_import.log
10:59:45 + imageid=203
10:59:45 ++ omero obj new MapAnnotation
10:59:46 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:47 + MAP=MapAnnotation:201
10:59:47 + omero obj map-set MapAnnotation:201 mapValue testkey testvalue
10:59:49 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:49 MapAnnotation:201
10:59:49 + omero obj new ImageAnnotationLink parent=Image:203 child=MapAnnotation:201
10:59:51 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:51 ImageAnnotationLink:201
10:59:51 ++ omero obj new Screen name=Screen
10:59:53 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:54 + screen=Screen:201
10:59:54 ++ omero obj new Plate name=Plate
10:59:56 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:56 + plate=Plate:201
10:59:56 + omero obj new ScreenPlateLink parent=Screen:201 child=Plate:201
10:59:58 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
10:59:58 ScreenPlateLink:201
10:59:58 + echo 'Importing SPW file'
10:59:58 Importing SPW file
10:59:58 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
10:59:58 + omero import -r Screen:201 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
11:00:07 ++ sed -n -e 's/^Plate://p' plate_import.log
11:00:07 + plateid=202
11:00:07 + omero logout
11:00:10 + omero login training_user-2@33b02994ca12:4064 -w ome -g training_group
11:00:13 Created session for training_user-2@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
11:00:13 + omero obj new Project 'name=Project 0'
11:00:15 Using session for training_user-2@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
11:00:15 Project:202
11:00:15 + omero obj new Dataset 'name=Dataset 0'
11:00:17 Using session for training_user-2@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
11:00:17 Dataset:205
11:00:17 + omero import test.fake --debug ERROR
11:00:20 Using session for training_user-2@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
11:00:20 2026-07-14 11:00:20,767 249 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
11:00:20 2026-07-14 11:00:20,783 265 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
11:00:23 Image:207
11:00:23 Other imported objects:
11:00:23 Fileset:205
11:00:23
11:00:23 ==> Summary
11:00:23 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.487
11:00:23 + omero obj new Screen name=Screen
11:00:26 Using session for training_user-2@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
11:00:26 Screen:202
11:00:26 + omero obj new Plate name=Plate
11:00:29 Using session for training_user-2@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group
11:00:29 Plate:203
11:00:29 + omero login training_user@33b02994ca12:4064 -w ome -g training_group-2
11:00:32 Created session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group-2
11:00:32 + omero obj new Project 'name=Project 0'
11:00:35 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group-2
11:00:35 Project:203
11:00:35 + omero obj new Dataset 'name=Dataset 0'
11:00:37 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group-2
11:00:37 Dataset:206
11:00:38 + omero import test.fake --debug ERROR
11:00:40 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group-2
11:00:40 2026-07-14 11:00:40,918 232 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
11:00:40 2026-07-14 11:00:40,931 245 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
11:00:43 Image:208
11:00:43 Other imported objects:
11:00:43 Fileset:206
11:00:43
11:00:43 ==> Summary
11:00:43 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.160
11:00:43 + omero obj new Screen name=Screen
11:00:45 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group-2
11:00:45 Screen:203
11:00:45 + omero obj new Plate name=Plate
11:00:47 Using session for training_user@33b02994ca12:4064. Idle timeout: 10 min. Current group: training_group-2
11:00:47 Plate:204
11:00:47 + omero logout
11:00:49 + echo omero.host=33b02994ca12
11:00:49 + echo omero.port=4064
11:00:49 + echo omero.webhost=http://nginx/web
11:00:49 + echo omero.servername=omero
11:00:49 + echo omero.user=training_user
11:00:49 + echo omero.pass=ome
11:00:49 + echo omero.group=training_group
11:00:49 + echo omero.projectid=201
11:00:49 + echo omero.datasetid=202
11:00:49 + echo omero.imageid=203
11:00:49 + echo omero.plateid=202
11:00:49 + echo omero.screenid=201
11:00:49 + echo omero.group2=training_group-2
11:00:49 + echo omero.ladmin=ladmin_user
11:00:49 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
11:00:49 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
11:00:49 + omero sessions clear
11:00:51 1 session(s) cleared
11:00:51 !! 07/14/26 11:00:51.431 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
11:00:51 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
11:00:51 + pip install --upgrade requests
11:00:52 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.34.2)
11:00:52 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.9)
11:00:52 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.18)
11:00:52 Requirement already satisfied: urllib3<3,>=1.26 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.7.0)
11:00:52 Requirement already satisfied: certifi>=2023.5.7 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.6.17)
11:00:52 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
11:01:02 Running training suite
11:01:02 created 20 shapes
11:01:02 retrieved 20 shapes in 4 batches
11:01:02 Current user:
11:01:02 ID: 2
11:01:02 Username: training_user
11:01:02 Full Name: training_user training_user
11:01:02 Is Admin: False
11:01:02 []
11:01:02 Member of:
11:01:02 ID: 3 Name: training_group
11:01:02 ID: 4 Name: training_group-2
11:01:02 Current group: training_group
11:01:02 Group owners:
11:01:02 Group members:
11:01:02 ID: 2 UserName: training_user Name: training_user training_user
11:01:02 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
11:01:02 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
11:01:02 Owner of:
11:01:02 Admins:
11:01:02 ID: 0 UserName: root Name: root root
11:01:02 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
11:01:02 ID: 52 UserName: <hidden> Name: <hidden> <hidden>
11:01:02 Created new Image:209 Name:"numpy image"
11:01:02 newPlane for z,t: 0 0 uint8 0 127
11:01:02 newPlane for z,t: 0 1 uint8 0 127
11:01:02 newPlane for z,t: 0 2 uint8 0 127
11:01:02 newPlane for z,t: 0 3 uint8 0 127
11:01:02 newPlane for z,t: 0 4 uint8 0 127
11:01:02 newPlane for z,t: 0 5 uint8 0 127
11:01:02 newPlane for z,t: 0 6 uint8 0 127
11:01:02 newPlane for z,t: 0 7 uint8 0 127
11:01:02 newPlane for z,t: 0 8 uint8 0 127
11:01:02 newPlane for z,t: 0 9 uint8 0 127
11:01:02 newPlane for z,t: 1 0 uint8 0 127
11:01:02 newPlane for z,t: 1 1 uint8 0 127
11:01:02 newPlane for z,t: 1 2 uint8 0 127
11:01:02 newPlane for z,t: 1 3 uint8 0 127
11:01:02 newPlane for z,t: 1 4 uint8 0 127
11:01:02 newPlane for z,t: 1 5 uint8 0 127
11:01:02 newPlane for z,t: 1 6 uint8 0 127
11:01:02 newPlane for z,t: 1 7 uint8 0 127
11:01:02 newPlane for z,t: 1 8 uint8 0 127
11:01:02 newPlane for z,t: 1 9 uint8 0 127
11:01:02 newPlane for z,t: 2 0 uint8 0 127
11:01:02 newPlane for z,t: 2 1 uint8 0 127
11:01:02 newPlane for z,t: 2 2 uint8 0 127
11:01:02 newPlane for z,t: 2 3 uint8 0 127
11:01:02 newPlane for z,t: 2 4 uint8 0 127
11:01:02 newPlane for z,t: 2 5 uint8 0 127
11:01:02 newPlane for z,t: 2 6 uint8 0 127
11:01:02 newPlane for z,t: 2 7 uint8 0 127
11:01:02 newPlane for z,t: 2 8 uint8 0 127
11:01:02 newPlane for z,t: 2 9 uint8 0 127
11:01:02 newPlane for z,t: 3 0 uint8 0 127
11:01:02 newPlane for z,t: 3 1 uint8 0 127
11:01:02 newPlane for z,t: 3 2 uint8 0 127
11:01:02 newPlane for z,t: 3 3 uint8 0 127
11:01:02 newPlane for z,t: 3 4 uint8 0 127
11:01:02 newPlane for z,t: 3 5 uint8 0 127
11:01:02 newPlane for z,t: 3 6 uint8 0 127
11:01:02 newPlane for z,t: 3 7 uint8 0 127
11:01:02 newPlane for z,t: 3 8 uint8 0 127
11:01:02 newPlane for z,t: 3 9 uint8 0 127
11:01:02 newPlane for z,t: 4 0 uint8 0 127
11:01:02 newPlane for z,t: 4 1 uint8 0 127
11:01:02 newPlane for z,t: 4 2 uint8 0 127
11:01:02 newPlane for z,t: 4 3 uint8 0 127
11:01:02 newPlane for z,t: 4 4 uint8 0 127
11:01:02 newPlane for z,t: 4 5 uint8 0 127
11:01:02 newPlane for z,t: 4 6 uint8 0 127
11:01:02 newPlane for z,t: 4 7 uint8 0 127
11:01:02 newPlane for z,t: 4 8 uint8 0 127
11:01:02 newPlane for z,t: 4 9 uint8 0 127
11:01:02 Deleting, please wait.
11:01:02 Error? False
11:01:02 203 test&sizeT=10&sizeZ=5&sizeC=3.fake
11:01:02 training_user_2/Blitz-0-Ice.ThreadPool.Server-2/2026-07/14/10-59-42.873/ test&sizeT=10&sizeZ=5&sizeC=3.fake
11:01:02 1
11:01:02 training_user_2/Blitz-0-Ice.ThreadPool.Server-2/2026-07/14/10-59-42.873/ test&sizeT=10&sizeZ=5&sizeC=3.fake
11:01:02 Current group: training_group
11:01:02 Permissions: READ-ONLY (rwr---)
11:01:02 Project 0 Owner: training_user-2 training_user-2
11:01:02 Project 0 Owner: training_user-2 training_user-2
11:01:02 Project 0 Owner: training_user-2 training_user-2
11:01:02 Project 0 Owner: training_user-2 training_user-2
11:01:02 Project 0 Owner: training_user-2 training_user-2
11:01:02 Project 1 Owner: training_user training_user
11:01:02 Project 1 Owner: training_user training_user
11:01:02 Project 1 Owner: training_user training_user
11:01:02 Project 1 Owner: training_user training_user
11:01:02 Project 1 Owner: training_user training_user
11:01:02 Image: <_ImageWrapper id=203>
11:01:02 Image: <_ImageWrapper id=203> Group: training_group 3
11:01:02 Image: <_ImageWrapper id=203> Channel: 0
11:01:02 Channel: 1
11:01:02 Channel: 2
11:01:02
11:01:02
11:01:02 original_metadata
11:01:02 global_metadata
11:01:02 series_metadata
11:01:02
11:01:02 Plane at zct: 0 0 0
11:01:02 [[ 0 0 0 ... 253 254 255]
11:01:02 [ 0 0 0 ... 253 254 255]
11:01:02 [ 0 0 0 ... 253 254 255]
11:01:02 ...
11:01:02 [ 0 1 2 ... 253 254 255]
11:01:02 [ 0 1 2 ... 253 254 255]
11:01:02 [ 0 1 2 ... 253 254 255]]
11:01:02 shape: (512, 512)
11:01:02 min: 0 max: 255 pixel type: uint8
11:01:02
11:01:02 Z stack of tiles:
11:01:02 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
11:01:02 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
11:01:02 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
11:01:02 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
11:01:02 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
11:01:02
11:01:02 Hyper stack of planes:
11:01:02 plane zct: (2, 0, 0) min: 0 max: 255
11:01:02 plane zct: (2, 0, 1) min: 0 max: 255
11:01:02 plane zct: (2, 0, 2) min: 0 max: 255
11:01:02 plane zct: (2, 0, 3) min: 0 max: 255
11:01:02 plane zct: (2, 0, 4) min: 0 max: 255
11:01:02 plane zct: (2, 0, 5) min: 0 max: 255
11:01:02 plane zct: (2, 0, 6) min: 0 max: 255
11:01:02 plane zct: (2, 0, 7) min: 0 max: 255
11:01:02 plane zct: (2, 0, 8) min: 0 max: 255
11:01:02 plane zct: (2, 0, 9) min: 0 max: 255
11:01:02 plane zct: (2, 1, 0) min: 0 max: 255
11:01:02 plane zct: (2, 1, 1) min: 0 max: 255
11:01:02 plane zct: (2, 1, 2) min: 0 max: 255
11:01:02 plane zct: (2, 1, 3) min: 0 max: 255
11:01:02 plane zct: (2, 1, 4) min: 0 max: 255
11:01:02 plane zct: (2, 1, 5) min: 0 max: 255
11:01:02 plane zct: (2, 1, 6) min: 0 max: 255
11:01:02 plane zct: (2, 1, 7) min: 0 max: 255
11:01:02 plane zct: (2, 1, 8) min: 0 max: 255
11:01:02 plane zct: (2, 1, 9) min: 0 max: 255
11:01:02 plane zct: (2, 2, 0) min: 0 max: 255
11:01:02 plane zct: (2, 2, 1) min: 0 max: 255
11:01:02 plane zct: (2, 2, 2) min: 0 max: 255
11:01:02 plane zct: (2, 2, 3) min: 0 max: 255
11:01:02 plane zct: (2, 2, 4) min: 0 max: 255
11:01:02 plane zct: (2, 2, 5) min: 0 max: 255
11:01:02 plane zct: (2, 2, 6) min: 0 max: 255
11:01:02 plane zct: (2, 2, 7) min: 0 max: 255
11:01:02 plane zct: (2, 2, 8) min: 0 max: 255
11:01:02 plane zct: (2, 2, 9) min: 0 max: 255
11:01:02 plane zct: (3, 0, 0) min: 0 max: 255
11:01:02 plane zct: (3, 0, 1) min: 0 max: 255
11:01:02 plane zct: (3, 0, 2) min: 0 max: 255
11:01:02 plane zct: (3, 0, 3) min: 0 max: 255
11:01:02 plane zct: (3, 0, 4) min: 0 max: 255
11:01:02 plane zct: (3, 0, 5) min: 0 max: 255
11:01:02 plane zct: (3, 0, 6) min: 0 max: 255
11:01:02 plane zct: (3, 0, 7) min: 0 max: 255
11:01:02 plane zct: (3, 0, 8) min: 0 max: 255
11:01:02 plane zct: (3, 0, 9) min: 0 max: 255
11:01:02 plane zct: (3, 1, 0) min: 0 max: 255
11:01:02 plane zct: (3, 1, 1) min: 0 max: 255
11:01:02 plane zct: (3, 1, 2) min: 0 max: 255
11:01:02 plane zct: (3, 1, 3) min: 0 max: 255
11:01:02 plane zct: (3, 1, 4) min: 0 max: 255
11:01:02 plane zct: (3, 1, 5) min: 0 max: 255
11:01:02 plane zct: (3, 1, 6) min: 0 max: 255
11:01:02 plane zct: (3, 1, 7) min: 0 max: 255
11:01:02 plane zct: (3, 1, 8) min: 0 max: 255
11:01:02 plane zct: (3, 1, 9) min: 0 max: 255
11:01:02 plane zct: (3, 2, 0) min: 0 max: 255
11:01:02 plane zct: (3, 2, 1) min: 0 max: 255
11:01:02 plane zct: (3, 2, 2) min: 0 max: 255
11:01:02 plane zct: (3, 2, 3) min: 0 max: 255
11:01:02 plane zct: (3, 2, 4) min: 0 max: 255
11:01:02 plane zct: (3, 2, 5) min: 0 max: 255
11:01:02 plane zct: (3, 2, 6) min: 0 max: 255
11:01:02 plane zct: (3, 2, 7) min: 0 max: 255
11:01:02 plane zct: (3, 2, 8) min: 0 max: 255
11:01:02 plane zct: (3, 2, 9) min: 0 max: 255
11:01:02 plane zct: (4, 0, 0) min: 0 max: 255
11:01:02 plane zct: (4, 0, 1) min: 0 max: 255
11:01:02 plane zct: (4, 0, 2) min: 0 max: 255
11:01:02 plane zct: (4, 0, 3) min: 0 max: 255
11:01:02 plane zct: (4, 0, 4) min: 0 max: 255
11:01:02 plane zct: (4, 0, 5) min: 0 max: 255
11:01:02 plane zct: (4, 0, 6) min: 0 max: 255
11:01:02 plane zct: (4, 0, 7) min: 0 max: 255
11:01:02 plane zct: (4, 0, 8) min: 0 max: 255
11:01:02 plane zct: (4, 0, 9) min: 0 max: 255
11:01:02 plane zct: (4, 1, 0) min: 0 max: 255
11:01:02 plane zct: (4, 1, 1) min: 0 max: 255
11:01:02 plane zct: (4, 1, 2) min: 0 max: 255
11:01:02 plane zct: (4, 1, 3) min: 0 max: 255
11:01:02 plane zct: (4, 1, 4) min: 0 max: 255
11:01:02 plane zct: (4, 1, 5) min: 0 max: 255
11:01:02 plane zct: (4, 1, 6) min: 0 max: 255
11:01:02 plane zct: (4, 1, 7) min: 0 max: 255
11:01:02 plane zct: (4, 1, 8) min: 0 max: 255
11:01:02 plane zct: (4, 1, 9) min: 0 max: 255
11:01:02 plane zct: (4, 2, 0) min: 0 max: 255
11:01:02 plane zct: (4, 2, 1) min: 0 max: 255
11:01:02 plane zct: (4, 2, 2) min: 0 max: 255
11:01:02 plane zct: (4, 2, 3) min: 0 max: 255
11:01:02 plane zct: (4, 2, 4) min: 0 max: 255
11:01:02 plane zct: (4, 2, 5) min: 0 max: 255
11:01:02 plane zct: (4, 2, 6) min: 0 max: 255
11:01:02 plane zct: (4, 2, 7) min: 0 max: 255
11:01:02 plane zct: (4, 2, 8) min: 0 max: 255
11:01:02 plane zct: (4, 2, 9) min: 0 max: 255
11:01:02 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
11:01:05
11:01:05 List Projects:
11:01:05 ==================================================
11:01:05 Project:1 Name:"Project 1" (owner=training_user)
11:01:05 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
11:01:05 Image:1 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
11:01:05 Image:12 Name:"New Image" (owner=training_user)
11:01:05 Image:13 Name:"newImageFrom3" (owner=training_user)
11:01:05 Image:2 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:7 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:17 Name:"new Name 1" (owner=training_user)
11:01:05 Dataset:18 Name:"new Name 2" (owner=training_user)
11:01:05 Project:51 Name:"Project 1" (owner=training_user)
11:01:05 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
11:01:05 Image:51 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
11:01:05 Image:62 Name:"New Image" (owner=training_user)
11:01:05 Image:63 Name:"newImageFrom53" (owner=training_user)
11:01:05 Image:52 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:57 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:67 Name:"new Name 1" (owner=training_user)
11:01:05 Dataset:68 Name:"new Name 2" (owner=training_user)
11:01:05 Project:101 Name:"Project 1" (owner=training_user)
11:01:05 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
11:01:05 Image:101 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
11:01:05 Image:112 Name:"New Image" (owner=training_user)
11:01:05 Image:113 Name:"newImageFrom103" (owner=training_user)
11:01:05 Image:102 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:107 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:117 Name:"new Name 1" (owner=training_user)
11:01:05 Dataset:118 Name:"new Name 2" (owner=training_user)
11:01:05 Project:151 Name:"Project 1" (owner=training_user)
11:01:05 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
11:01:05 Image:151 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
11:01:05 Image:162 Name:"New Image" (owner=training_user)
11:01:05 Image:163 Name:"newImageFrom153" (owner=training_user)
11:01:05 Image:152 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:157 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:167 Name:"new Name 1" (owner=training_user)
11:01:05 Dataset:168 Name:"new Name 2" (owner=training_user)
11:01:05 Project:201 Name:"Project 1" (owner=training_user)
11:01:05 Dataset:201 Name:"Dataset 1-1" (owner=training_user)
11:01:05 Image:201 Name:"test.fake" (owner=training_user)
11:01:05 Dataset:202 Name:"Dataset 1-2" (owner=training_user)
11:01:05 Image:202 Name:"test.fake" (owner=training_user)
11:01:05
11:01:05 List orphaned Datasets:
11:01:05 ==================================================
11:01:05 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
11:01:05 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
11:01:05 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
11:01:05 Dataset:10 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:9 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:8 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:11 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:12 Name:"New Dataset2" (owner=training_user)
11:01:05 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
11:01:05 Dataset:14 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:15 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:16 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
11:01:05 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
11:01:05 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
11:01:05 Dataset:60 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:59 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:58 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:61 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:62 Name:"New Dataset2" (owner=training_user)
11:01:05 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
11:01:05 Dataset:64 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:65 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:66 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
11:01:05 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
11:01:05 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
11:01:05 Dataset:110 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:109 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:108 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:111 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:112 Name:"New Dataset2" (owner=training_user)
11:01:05 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
11:01:05 Dataset:114 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:115 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:116 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
11:01:05 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
11:01:05 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
11:01:05 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
11:01:05 Dataset:160 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:159 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:158 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:161 Name:"New Dataset" (owner=training_user)
11:01:05 Dataset:162 Name:"New Dataset2" (owner=training_user)
11:01:05 Dataset:164 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:165 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:166 Name:"MyDataset" (owner=training_user)
11:01:05 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user)
11:01:05 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user)
11:01:05 Dataset:205 Name:"Dataset 0" (owner=training_user-2)
11:01:05
11:01:05 Images in Dataset: 202
11:01:05 ==================================================
11:01:05 Image:202 Name:"test.fake" (owner=training_user)
11:01:05
11:01:05 Image:203
11:01:05 ==================================================
11:01:05 test&sizeT=10&sizeZ=5&sizeC=3.fake
11:01:05 X: 512
11:01:05 Y: 512
11:01:05 Z: 5
11:01:05 C: 3
11:01:05 T: 10
11:01:05 Channel: 0 Color: (255, 0, 0)
11:01:05 Lookup table: None
11:01:05 Is reverse intensity? False
11:01:05 Channel: 1 Color: (0, 255, 0)
11:01:05 Lookup table: None
11:01:05 Is reverse intensity? False
11:01:05 Channel: 2 Color: (0, 0, 255)
11:01:05 Lookup table: None
11:01:05 Is reverse intensity? False
11:01:05 Pixel Size X: None
11:01:05
11:01:05 List Screens:
11:01:05 ==================================================
11:01:05 Screen:1 Name:"Screen" (owner=training_user)
11:01:05 Plate:1 Name:"Plate" (owner=training_user)
11:01:05 Plate:2 Name:"Plate Name 0" (owner=training_user)
11:01:05 Screen:51 Name:"Screen" (owner=training_user)
11:01:05 Plate:51 Name:"Plate" (owner=training_user)
11:01:05 Plate:52 Name:"Plate Name 0" (owner=training_user)
11:01:05 Screen:101 Name:"Screen" (owner=training_user)
11:01:05 Plate:101 Name:"Plate" (owner=training_user)
11:01:05 Plate:102 Name:"Plate Name 0" (owner=training_user)
11:01:05 Screen:151 Name:"Screen" (owner=training_user)
11:01:05 Plate:151 Name:"Plate" (owner=training_user)
11:01:05 Plate:152 Name:"Plate Name 0" (owner=training_user)
11:01:05 Screen:201 Name:"Screen" (owner=training_user)
11:01:05 Plate:201 Name:"Plate" (owner=training_user)
11:01:05 Plate:202 Name:"Plate Name 0" (owner=training_user)
11:01:05 Screen:2 Name:"Screen" (owner=training_user-2)
11:01:05 Screen:52 Name:"Screen" (owner=training_user-2)
11:01:05 Screen:102 Name:"Screen" (owner=training_user-2)
11:01:05 Screen:152 Name:"Screen" (owner=training_user-2)
11:01:05 Screen:202 Name:"Screen" (owner=training_user-2)
11:01:05
11:01:05 Plate:202
11:01:05 ==================================================
11:01:05
11:01:05 Number of fields: (0, 0)
11:01:05
11:01:05 Grid size: {'rows': 1, 'columns': 3}
11:01:05
11:01:05 Wells in Plate: Plate Name 0
11:01:05 Well: 0 0 Fields: 1
11:01:05 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 204
11:01:05 Well: 0 1 Fields: 1
11:01:05 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 206
11:01:05 Well: 0 2 Fields: 1
11:01:05 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 205
11:01:05 201 <class 'omero.model.MapAnnotationI'>
11:01:05 added by training_user
11:01:05 Image ID: 203
11:01:05 Annotation ID: 201
11:01:05 203
11:01:05 Channel rendering settings:
11:01:05 Name: 0
11:01:05 Color: FF0000
11:01:05 Active: True
11:01:05 Levels: 0.0 - 255.0
11:01:05 Name: 1
11:01:05 Color: 00FF00
11:01:05 Active: True
11:01:05 Levels: 0.0 - 255.0
11:01:05 Name: 2
11:01:05 Color: 0000FF
11:01:05 Active: True
11:01:05 Levels: 0.0 - 255.0
11:01:05 isGreyscaleRenderingModel: False
11:01:05 Default Z/T positions:
11:01:05 Z = 2, T = 0
11:01:05 Rendering Defs on Image:
11:01:05 ID: 203 (owner: training_user training_user)
11:01:05 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
11:01:05 ROI: ID: 202
11:01:05 Shape: id 221 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
11:01:05 Shape: id 222 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
11:01:11 ROI: ID: 203
11:01:11 Shape: id 223 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
11:01:11 ROI: ID: 204
11:01:11 Shape: id 224 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
11:01:11 ROI: ID: 205
11:01:11 Shape: id 225 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
11:01:11 ROI: ID: 206
11:01:11 <class 'omero.model.PolygonI'> Not supported by this code
11:01:11 Shape: id 226 theT 0 theZ 2 textValue test-Polygon
11:01:11 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
11:01:11 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
11:01:11 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
11:01:11 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
11:01:11 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
11:01:11 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
11:01:11 Removing Shape from ROI...
11:01:11 Deleting ROI: 207
11:01:11 Table Columns:
11:01:11 Uid
11:01:11 MyStringColumnInit
11:01:11 Row count: 10
11:01:11
11:01:11 Get All Data for rows: [3, 5, 7]
11:01:11 Data for Column: Uid
11:01:11 1
11:01:11 2
11:01:11 3
11:01:11 4
11:01:11 5
11:01:11 6
11:01:11 7
11:01:11 8
11:01:11 9
11:01:11 10
11:01:11 Data for Column: MyStringColumnInit
11:01:11 one
11:01:11 two
11:01:11 three
11:01:11 four
11:01:11 five
11:01:11 six
11:01:11 seven
11:01:11 eight
11:01:11 nine
11:01:11 ten
11:01:11
11:01:11 Get All Data for rows with slice: [3, 5, 7]
11:01:11 Data for Column: Uid
11:01:11 4
11:01:11 6
11:01:11 8
11:01:11 Data for Column: MyStringColumnInit
11:01:11 four
11:01:11 six
11:01:11 eight
11:01:11
11:01:11 Get Data for cols: [1] and between rows: 3 - 7
11:01:11 Data for Column: MyStringColumnInit
11:01:11 four
11:01:11 five
11:01:11 six
11:01:11 seven
11:01:11
11:01:11 Get Data for cols: [1] and between rows: 3 - 7 with slice
11:01:11 Data for Column: MyStringColumnInit
11:01:11 four
11:01:11 five
11:01:11 six
11:01:11 seven
11:01:11 Query Results for Column: Uid
11:01:11 3
11:01:11 4
11:01:11 5
11:01:11 6
11:01:11 7
11:01:11 8
11:01:11 Query Results for Column: MyStringColumnInit
11:01:11 three
11:01:11 four
11:01:11 five
11:01:11 six
11:01:11 seven
11:01:11 eight
11:01:11 Opened table with row-count: 10
11:01:11 New dataset, Id: 207
11:01:11 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
11:01:11 205 <class 'omero.model.TagAnnotationI'> added by training_user
11:01:11 Tag value: New Tag
11:01:11 206 <class 'omero.model.MapAnnotationI'> added by training_user
11:01:11
11:01:11 Creating an OriginalFile and FileAnnotation
11:01:11 Attaching FileAnnotation to Dataset: File ID: 207 , README.txt Size: 15
11:01:11
11:01:11 Annotations on Dataset: New Dataset
11:01:11 File ID: 554 README.txt Size: 15
11:01:11
11:01:11 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
11:01:11 File downloaded!
11:01:11 57 README.txt
11:01:11 157 README.txt
11:01:11 107 README.txt
11:01:11 207 README.txt
11:01:11 7 README.txt
11:01:11 Found Annotation with namespace: imperial.training.demo
11:01:11 Plane: 0 0 0
11:01:11 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
11:01:11 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
11:01:11
11:01:11 List Datasets:
11:01:11 ID: 8 Name: MyDataset
11:01:11 ID: 9 Name: MyDataset
11:01:11 ID: 10 Name: MyDataset
11:01:11 ID: 14 Name: MyDataset
11:01:11 ID: 15 Name: MyDataset
11:01:11 ID: 16 Name: MyDataset
11:01:11 ID: 58 Name: MyDataset
11:01:11 ID: 59 Name: MyDataset
11:01:11 ID: 60 Name: MyDataset
11:01:11 ID: 64 Name: MyDataset
11:01:11 ID: 65 Name: MyDataset
11:01:11 ID: 66 Name: MyDataset
11:01:11 ID: 108 Name: MyDataset
11:01:11 ID: 109 Name: MyDataset
11:01:11 ID: 110 Name: MyDataset
11:01:11 ID: 114 Name: MyDataset
11:01:11 ID: 115 Name: MyDataset
11:01:11 ID: 116 Name: MyDataset
11:01:11 ID: 158 Name: MyDataset
11:01:11 ID: 159 Name: MyDataset
11:01:11 ID: 160 Name: MyDataset
11:01:11 ID: 164 Name: MyDataset
11:01:11 ID: 165 Name: MyDataset
11:01:11 ID: 166 Name: MyDataset
11:01:11 ID: 208 Name: MyDataset
11:01:11 ID: 209 Name: MyDataset
11:01:11 ID: 210 Name: MyDataset
11:01:11
11:01:11 List Tags:
11:01:11 ID: 8 Text: MyTag Desc: MyTag 0
11:01:11 ID: 9 Text: MyTag Desc: MyTag 1
11:01:11 ID: 10 Text: MyTag Desc: MyTag 2
11:01:11 ID: 16 Text: MyTag Desc: MyTag 0
11:01:11 ID: 17 Text: MyTag Desc: MyTag 1
11:01:11 ID: 18 Text: MyTag Desc: MyTag 2
11:01:11 ID: 58 Text: MyTag Desc: MyTag 0
11:01:11 ID: 59 Text: MyTag Desc: MyTag 1
11:01:11 ID: 60 Text: MyTag Desc: MyTag 2
11:01:11 ID: 66 Text: MyTag Desc: MyTag 0
11:01:11 ID: 67 Text: MyTag Desc: MyTag 1
11:01:11 ID: 68 Text: MyTag Desc: MyTag 2
11:01:11 ID: 108 Text: MyTag Desc: MyTag 0
11:01:11 ID: 109 Text: MyTag Desc: MyTag 1
11:01:11 ID: 110 Text: MyTag Desc: MyTag 2
11:01:11 ID: 116 Text: MyTag Desc: MyTag 0
11:01:11 ID: 117 Text: MyTag Desc: MyTag 1
11:01:11 ID: 118 Text: MyTag Desc: MyTag 2
11:01:11 ID: 158 Text: MyTag Desc: MyTag 0
11:01:11 ID: 159 Text: MyTag Desc: MyTag 1
11:01:11 ID: 160 Text: MyTag Desc: MyTag 2
11:01:11 ID: 166 Text: MyTag Desc: MyTag 0
11:01:11 ID: 167 Text: MyTag Desc: MyTag 1
11:01:11 ID: 168 Text: MyTag Desc: MyTag 2
11:01:11 ID: 208 Text: MyTag Desc: MyTag 0
11:01:11 ID: 209 Text: MyTag Desc: MyTag 1
11:01:11 ID: 210 Text: MyTag Desc: MyTag 2
11:01:11 New dataset, Id: 211
11:01:11 New dataset 2, Id: 212
11:01:11 test&sizeT=10&sizeZ=5&sizeC=3.fake
11:01:11 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
11:01:11 [[ 0 0 0 ... 102 103 104]
11:01:11 [ 0 0 0 ... 102 103 104]
11:01:11 [ 0 0 0 ... 102 103 104]
11:01:11 ...
11:01:11 [ 5 6 7 ... 102 103 104]
11:01:11 [ 5 6 7 ... 102 103 104]
11:01:11 [ 5 6 7 ... 102 103 104]]
11:01:11 shape: (100, 100)
11:01:11 min: 0 max: 104 pixel type: uint8
11:01:11 Average : 53.9125
11:01:11 Getting data for T, tile: 0 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 1 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 2 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 3 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 4 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 5 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 6 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 7 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 8 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 9 (256, 0, 10, 512)
11:01:11 kymograph_data (512, 100)
11:01:11 Attaching kymograph.png to image
11:01:11 test&sizeT=10&sizeZ=5&sizeC=3.fake
11:01:11 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
11:01:11 [[ 0 0 0 ... 102 103 104]
11:01:11 [ 0 0 0 ... 102 103 104]
11:01:11 [ 0 0 0 ... 102 103 104]
11:01:11 ...
11:01:11 [ 5 6 7 ... 102 103 104]
11:01:11 [ 5 6 7 ... 102 103 104]
11:01:11 [ 5 6 7 ... 102 103 104]]
11:01:11 shape: (100, 100)
11:01:11 min: 0 max: 104 pixel type: uint8
11:01:11 Average : 53.9125
11:01:11 Getting data for T, tile: 0 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 1 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 2 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 3 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 4 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 5 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 6 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 7 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 8 (256, 0, 10, 512)
11:01:11 Getting data for T, tile: 9 (256, 0, 10, 512)
11:01:11 kymograph_data (512, 100)
11:01:11 Attaching kymograph.png to image
11:01:11 No file downloaded. Project not rated.
11:01:11 New image, Id: 212
11:01:11 Starting at: http://nginx/web/api/
11:01:11 CSRF token xkHOOWH5B769Xr15ohpGfttd6OZnNzXH
11:01:11 Servers:
11:01:11 -id: 1
11:01:11 name: omero
11:01:11 host: omero
11:01:11 port: 4064
11:01:11 -id: 2
11:01:11 name: testintegration
11:01:11 host: testintegration
11:01:11 port: 14064
11:01:11 eventContext {'sessionId': 568, 'sessionUuid': '8593fbf1-22a9-4ad5-9eb6-3a7bb60a4f05', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
11:01:11 Projects:
11:01:11 2 Project 0
11:01:11 3 Project 0
11:01:11 Created Project: 206 API TEST foo
11:01:11 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 206, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/206/datasets/'}}
11:01:11 !! 07/14/26 11:01:11.809 error: communicator not destroyed during global destruction.+ deactivate
11:01:11 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:01:11 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:01:11 + export PATH
11:01:11 + unset _OLD_VIRTUAL_PATH
11:01:11 + '[' -n '' ']'
11:01:11 + hash -r
11:01:11 + '[' -n '' ']'
11:01:11 + unset VIRTUAL_ENV
11:01:11 + unset VIRTUAL_ENV_PROMPT
11:01:11 + '[' '!' '' = nondestructive ']'
11:01:11 + unset -f deactivate
11:01:11 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
11:01:11 + javac --release 11 -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
11:01:14 Note: Some input files use unchecked or unsafe operations.
11:01:14 Note: Recompile with -Xlint:unchecked for details.
11:01:14 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
11:01:17 omero.cmd.Delete2Response@5ed731d0
11:01:17 omero.cmd.Delete2Response@58e6d4b8
11:01:18 one [class java.lang.String] 1.0 [class java.lang.Double]
11:01:18 two [class java.lang.String] 2.0 [class java.lang.Double]
11:01:18 three [class java.lang.String] 3.0 [class java.lang.Double]
11:01:18 -1.0
11:01:18 0
11:01:18 1
11:01:18 2
11:01:20 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
11:01:20 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
11:01:20 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
11:01:20 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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11:01:20 246 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 247 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 248 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 249 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 253 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 254 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 255 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
11:01:20 Project:51 Project 1
11:01:20 dataset:67 new Name 1
11:01:20 dataset:52 Dataset 1-2
11:01:20 dataset:51 Dataset 1-1
11:01:20 dataset:57 New Dataset
11:01:20 dataset:68 new Name 2
11:01:20 Project:152 Project 0
11:01:20 Project:1 Project 1
11:01:20 dataset:7 New Dataset
11:01:20 dataset:1 Dataset 1-1
11:01:20 dataset:2 Dataset 1-2
11:01:20 dataset:17 new Name 1
11:01:20 dataset:18 new Name 2
11:01:20 Project:102 Project 0
11:01:20 Project:2 Project 0
11:01:20 Project:151 Project 1
11:01:20 dataset:168 new Name 2
11:01:20 dataset:152 Dataset 1-2
11:01:20 dataset:157 New Dataset
11:01:20 dataset:151 Dataset 1-1
11:01:20 dataset:167 new Name 1
11:01:20 Project:201 Project 1
11:01:20 dataset:202 Dataset 1-2
11:01:20 dataset:201 Dataset 1-1
11:01:20 dataset:207 New Dataset
11:01:20 Project:101 Project 1
11:01:20 dataset:107 New Dataset
11:01:20 dataset:117 new Name 1
11:01:20 dataset:101 Dataset 1-1
11:01:20 dataset:102 Dataset 1-2
11:01:20 dataset:118 new Name 2
11:01:20 Project:52 Project 0
11:01:20 Project:202 Project 0
11:01:20 image:202 test.fake
11:01:20 image:213 newImageFrom203
11:01:20 image:212 New Image
11:01:20 5
11:01:20 10
11:01:20 3
11:01:20 512
11:01:20 512
11:01:20 screen:1 Screen
11:01:20 plate:1 Plate
11:01:20 plate:2 Plate Name 0
11:01:20 screen:201 Screen
11:01:20 plate:201 Plate
11:01:20 plate:202 Plate Name 0
11:01:20 screen:202 Screen
11:01:20 screen:51 Screen
11:01:20 plate:52 Plate Name 0
11:01:20 plate:51 Plate
11:01:20 screen:151 Screen
11:01:20 plate:151 Plate
11:01:20 plate:152 Plate Name 0
11:01:20 screen:152 Screen
11:01:20 screen:52 Screen
11:01:20 screen:2 Screen
11:01:20 screen:101 Screen
11:01:20 plate:102 Plate Name 0
11:01:20 plate:101 Plate
11:01:20 screen:102 Screen
11:01:21 well:201
11:01:21 well:203
11:01:21 well:202
11:01:21 plate:1
11:01:21 plate:102
11:01:21 plate:203
11:01:21 plate:201
11:01:21 plate:152
11:01:21 plate:3
11:01:21 plate:103
11:01:21 plate:151
11:01:21 plate:52
11:01:21 plate:2
11:01:21 plate:202
11:01:21 plate:153
11:01:21 plate:101
11:01:21 plate:51
11:01:21 plate:53
11:01:21
11:01:21 List Datasets:
11:01:21 ID: 8 Name: MyDataset
11:01:21 ID: 9 Name: MyDataset
11:01:21 ID: 10 Name: MyDataset
11:01:21 ID: 14 Name: MyDataset
11:01:21 ID: 15 Name: MyDataset
11:01:21 ID: 16 Name: MyDataset
11:01:21 ID: 58 Name: MyDataset
11:01:21 ID: 59 Name: MyDataset
11:01:21 ID: 60 Name: MyDataset
11:01:21 ID: 64 Name: MyDataset
11:01:21
11:01:21 List Tags:
11:01:21 ID: 16 NS: omero.training.demo
11:01:21 ID: 17 NS: omero.training.demo
11:01:21 ID: 18 NS: omero.training.demo
11:01:21 ID: 66 NS: omero.training.demo
11:01:21 ID: 67 NS: omero.training.demo
11:01:21 ID: 68 NS: omero.training.demo
11:01:21 ID: 116 NS: omero.training.demo
11:01:21 ID: 117 NS: omero.training.demo
11:01:21 ID: 118 NS: omero.training.demo
11:01:21 ID: 166 NS: omero.training.demo
11:01:21 Dataset:61 New Dataset
11:01:21 Dataset:16 MyDataset
11:01:21 Dataset:153 Orphaned dataset 1
11:01:21 Project:101 Project 1
11:01:21 Dataset:210 MyDataset
11:01:21 Dataset:164 MyDataset
11:01:21 Dataset:112 New Dataset2
11:01:21 Dataset:66 MyDataset
11:01:21 Dataset:214 MyDataset
11:01:21 Project:151 Project 1
11:01:21 Dataset:3 Orphaned dataset 1
11:01:21 Dataset:10 MyDataset
11:01:21 Dataset:62 New Dataset2
11:01:21 Dataset:104 Orphaned dataset 2
11:01:21 Dataset:159 MyDataset
11:01:21 Dataset:116 MyDataset
11:01:21 Dataset:203 Orphaned dataset 1
11:01:21 Dataset:215 MyDataset
11:01:21 Dataset:162 New Dataset2
11:01:21 Project:51 Project 1
11:01:21 Dataset:209 MyDataset
11:01:21 Dataset:14 MyDataset
11:01:21 Dataset:63 FileAnnotationDelete
11:01:21 Dataset:64 MyDataset
11:01:21 Dataset:13 FileAnnotationDelete
11:01:21 Dataset:161 New Dataset
11:01:21 Dataset:166 MyDataset
11:01:21 Dataset:103 Orphaned dataset 1
11:01:21 Dataset:163 FileAnnotationDelete
11:01:21 Project:201 Project 1
11:01:21 Dataset:115 MyDataset
11:01:21 Dataset:60 MyDataset
11:01:21 Dataset:113 FileAnnotationDelete
11:01:21 Dataset:114 MyDataset
11:01:21 Dataset:11 New Dataset
11:01:21 Dataset:9 MyDataset
11:01:21 Dataset:160 MyDataset
11:01:21 Dataset:110 MyDataset
11:01:21 Dataset:154 Orphaned dataset 2
11:01:21 Dataset:216 MyDataset
11:01:21 Dataset:212 New Dataset2
11:01:21 Dataset:213 FileAnnotationDelete
11:01:21 Dataset:204 Orphaned dataset 2
11:01:21 Dataset:109 MyDataset
11:01:21 Dataset:208 MyDataset
11:01:21 Dataset:8 MyDataset
11:01:21 Dataset:12 New Dataset2
11:01:21 Dataset:58 MyDataset
11:01:21 Dataset:111 New Dataset
11:01:21 Dataset:54 Orphaned dataset 2
11:01:21 Dataset:165 MyDataset
11:01:21 Dataset:65 MyDataset
11:01:21 Dataset:108 MyDataset
11:01:21 Dataset:158 MyDataset
11:01:21 Dataset:59 MyDataset
11:01:21 Dataset:53 Orphaned dataset 1
11:01:21 Dataset:211 New Dataset
11:01:21 Dataset:4 Orphaned dataset 2
11:01:21 Project:1 Project 1
11:01:21 Dataset:15 MyDataset
11:01:21 Size:0
11:01:21 512 512
11:01:22 9
11:01:22 9
11:01:22 1
11:01:23 Logged in as ladmin_user
11:01:23 Added 'training_user's tag' to dataset new Name 1 on behalf of training_user
11:01:23 Added 'ladmin_user's tag' to dataset new Name 1 as admin.
11:01:23 Finished: SUCCESS
