00:57:04 Started by upstream project "Trigger" build number 26
00:57:04 originally caused by:
00:57:04 Started by timer
00:57:04 Running as SYSTEM
00:57:04 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
00:57:04 [OMERO-training] $ /bin/bash -xe /tmp/jenkins5788849707464068875.sh
00:57:04 + rm -rf /home/omero/workspace/OMERO-training/.venv3
00:57:05 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
00:57:08 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
00:57:08 ++ deactivate nondestructive
00:57:08 ++ '[' -n '' ']'
00:57:08 ++ '[' -n '' ']'
00:57:08 ++ hash -r
00:57:08 ++ '[' -n '' ']'
00:57:08 ++ unset VIRTUAL_ENV
00:57:08 ++ unset VIRTUAL_ENV_PROMPT
00:57:08 ++ '[' '!' nondestructive = nondestructive ']'
00:57:08 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
00:57:08 ++ export VIRTUAL_ENV
00:57:08 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:08 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:08 ++ export PATH
00:57:08 ++ '[' -n '' ']'
00:57:08 ++ '[' -z '' ']'
00:57:08 ++ _OLD_VIRTUAL_PS1=
00:57:08 ++ PS1='(.venv3) '
00:57:08 ++ export PS1
00:57:08 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:57:08 ++ export VIRTUAL_ENV_PROMPT
00:57:08 ++ hash -r
00:57:08 + pip install -U pip setuptools
00:57:09 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:57:09 Collecting pip
00:57:09 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
00:57:09 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
00:57:09 Collecting setuptools
00:57:09 Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
00:57:09 Installing collected packages: setuptools, pip
00:57:09 Attempting uninstall: setuptools
00:57:09 Found existing installation: setuptools 65.5.1
00:57:09 Uninstalling setuptools-65.5.1:
00:57:09 Successfully uninstalled setuptools-65.5.1
00:57:10 Attempting uninstall: pip
00:57:10 Found existing installation: pip 22.3.1
00:57:10 Uninstalling pip-22.3.1:
00:57:10 Successfully uninstalled pip-22.3.1
00:57:11 Successfully installed pip-25.3 setuptools-80.9.0
00:57:12 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:57:12 Collecting zeroc-ice==3.6.5
00:57:12 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:57:17 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.8 MB/s 0:00:04
00:57:17 Installing collected packages: zeroc-ice
00:57:18 Successfully installed zeroc-ice-3.6.5
00:57:18 + pip install markdown
00:57:18 Collecting markdown
00:57:18 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
00:57:18 Using cached markdown-3.10-py3-none-any.whl (107 kB)
00:57:18 Installing collected packages: markdown
00:57:18 Successfully installed markdown-3.10
00:57:18 + pip install mox3 pytest 'pytest-xdist<2'
00:57:19 Collecting mox3
00:57:19 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
00:57:19 Collecting pytest
00:57:19 Using cached pytest-9.0.2-py3-none-any.whl.metadata (7.6 kB)
00:57:19 Collecting pytest-xdist<2
00:57:19 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
00:57:19 Collecting execnet>=1.1 (from pytest-xdist<2)
00:57:19 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
00:57:19 Collecting pytest-forked (from pytest-xdist<2)
00:57:19 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
00:57:19 Collecting six (from pytest-xdist<2)
00:57:19 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:57:19 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
00:57:19 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
00:57:19 Collecting fixtures>=3.0.0 (from mox3)
00:57:19 Using cached fixtures-4.2.8-py3-none-any.whl.metadata (22 kB)
00:57:19 Collecting iniconfig>=1.0.1 (from pytest)
00:57:19 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
00:57:19 Collecting packaging>=22 (from pytest)
00:57:19 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
00:57:19 Collecting pluggy<2,>=1.5 (from pytest)
00:57:19 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
00:57:19 Collecting pygments>=2.7.2 (from pytest)
00:57:19 Using cached pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
00:57:19 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (80.9.0)
00:57:19 Collecting py (from pytest-forked->pytest-xdist<2)
00:57:19 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:57:19 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
00:57:19 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
00:57:19 Using cached pytest-9.0.2-py3-none-any.whl (374 kB)
00:57:19 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
00:57:19 Using cached execnet-2.1.2-py3-none-any.whl (40 kB)
00:57:19 Using cached fixtures-4.2.8-py3-none-any.whl (40 kB)
00:57:19 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
00:57:19 Using cached packaging-25.0-py3-none-any.whl (66 kB)
00:57:19 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB)
00:57:19 Using cached pygments-2.19.2-py3-none-any.whl (1.2 MB)
00:57:19 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
00:57:19 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
00:57:19 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:57:19 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
00:57:21
00:57:21 Successfully installed execnet-2.1.2 fixtures-4.2.8 iniconfig-2.3.0 mox3-1.1.0 packaging-25.0 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.19.2 pytest-9.0.2 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
00:57:21 + pip install tables
00:57:21 Collecting tables
00:57:21 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:57:21 Collecting numpy>=1.20.0 (from tables)
00:57:21 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:57:21 Collecting numexpr>=2.6.2 (from tables)
00:57:21 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:57:21 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (25.0)
00:57:21 Collecting py-cpuinfo (from tables)
00:57:21 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:57:21 Collecting blosc2>=2.3.0 (from tables)
00:57:21 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
00:57:21 Collecting typing-extensions>=4.4.0 (from tables)
00:57:21 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:57:22 Collecting ndindex (from blosc2>=2.3.0->tables)
00:57:22 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:57:22 Collecting msgpack (from blosc2>=2.3.0->tables)
00:57:22 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:57:22 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:57:22 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
00:57:22 Collecting requests (from blosc2>=2.3.0->tables)
00:57:22 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:57:22 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
00:57:22 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:57:22 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:57:22 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:57:22 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:57:22 Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB)
00:57:22 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:57:22 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:57:22 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:57:22 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
00:57:22 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:57:22 Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB)
00:57:22 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:57:22 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:57:22 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:57:22 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
00:57:22 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:57:22 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:57:22 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:57:22 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:57:22 Using cached urllib3-2.6.2-py3-none-any.whl (131 kB)
00:57:22 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:57:22 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables
00:57:25
00:57:25 Successfully installed blosc2-3.12.2 certifi-2026.1.4 charset_normalizer-3.4.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2
00:57:25 + pip install jinja2
00:57:26 Collecting jinja2
00:57:26 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:57:26 Collecting MarkupSafe>=2.0 (from jinja2)
00:57:26 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:57:26 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:57:26 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:57:26 Installing collected packages: MarkupSafe, jinja2
00:57:26
00:57:26 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:57:26 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.30.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
00:57:26 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 8
00:57:28 Copied 2 artifacts from "OMERO-build" build number 8
00:57:28 Copied 2 artifacts from "OMERO-build-build" build number 11
00:57:28 [OMERO-training] $ /bin/bash -xe /tmp/jenkins984730505356100705.sh
00:57:28 + source /home/settings.env
00:57:28 ++ OMERO_DB_HOST=pg
00:57:28 ++ OMERO_DB_USER=postgres
00:57:28 ++ OMERO_DB_PASS=
00:57:28 ++ OMERO_ROOT_PASS=omero
00:57:28 ++ OMERO_DATA_DIR=/OMERO
00:57:28 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:57:28 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
00:57:28 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
00:57:28 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
00:57:28 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
00:57:28 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
00:57:28 ++ ls openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:28 + ZIP=openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:28 + DIST=openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8
00:57:28 + unzip -n openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:28 Archive: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.classpath-template
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/Pull_Request_Template.md
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/docker_build.yml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/release.yml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/source_build.yml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.github/workflows/update.yaml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.mailmap
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/.project
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/CMakeLists.txt
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/CONTRIBUTING.md
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/Dockerfile
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/LICENSE.txt
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/README.md
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/SUPPORT.md
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/build.bat
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/build.py
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/build.xml
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/.classpath
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/.project
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/excludebugs.xml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/global.xml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/hibernate.xml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/lifecycle.xml
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/version.xml
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/scripts/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/scripts/parse_version
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/scripts/source-archive.py
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/build.xml
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/README.md
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/build.xml
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/plugins/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/plugins/robot.py
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/robot.template
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/web/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/web/annotation.txt
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/web/login.txt
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/web/thumbs.txt
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/web/tree.txt
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/web/webadmin.txt
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/resources/well_sample_posXY.py
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tests/ui/robot_setup.sh
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00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
00:57:28 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
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00:57:28 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
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00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/OMERO3__5.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__5/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__6/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__7/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__8/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__9/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__4/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__4/OMERO3__1.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__5/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__5/OMERO3__4.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__6/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__6/OMERO3__5.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__7/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__7/OMERO3__6.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:57:29 creating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/schema.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/views.sql
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/test.xml
00:57:29 inflating: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/update_dependencies.sh
00:57:29 extracting: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/antlib/resources/gitversion.xml
00:57:29 extracting: openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8/components/tools/OmeroCpp/cmake/GitVersion.cmake
00:57:29 + rm -f openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:29 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-578-e0eabcc200-ice36-b8 /home/omero/workspace/OMERO-training/openmicroscopy
00:57:29 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:57:29 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:57:29 ++ ls OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:29 + ZIP=OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:29 + DIST=OMERO.server-5.6.3-578-e0eabcc200-ice36-b8
00:57:29 + unzip -n OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:29 Archive: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/grid/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/profiles/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/error/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/grid/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/client/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/janelia/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/matplotlib/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/ncsa_paledit/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/seaborn/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/luts/wcif/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/analysis_scripts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/annotation_scripts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/export_scripts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/figure_scripts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/import_scripts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/scripts/omero/util_scripts/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/lib/server/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/share/licenses/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/misc/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__1/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__10/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__11/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__2/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__3/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__5/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__6/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__7/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__8/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__9/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__4/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__5/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__6/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__7/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/var/
00:57:29 creating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/var/tmp/
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/LICENSE.txt
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/backup.cfg
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/mail-senders.example
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/blitz/mail-server.example
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/build.properties
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/env.bat
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/env.sh
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/hibernate.properties
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/ice.config
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-cli.xml
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-indexing-cli.xml
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback-indexing.xml
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/logback.xml
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/mime.types
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/node1.cfg
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/node2.cfg
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/omero.properties
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/profiles/psql
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/rollover.cfg
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/Windows.cfg
00:57:29 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/etc/templates/error/maintainance.html
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00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__3/OMERO3__5.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__4/OMERO3__5.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__4/OMERO3__1.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__5/OMERO3__4.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__6/OMERO3__5.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO3__7/OMERO3__6.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO4__0/OMERO3A__11.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-footer.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/psql-header.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/schema.sql
00:57:31 inflating: OMERO.server-5.6.3-578-e0eabcc200-ice36-b8/sql/psql/OMERO5.4__0/views.sql
00:57:31 + rm -f OMERO.server-5.6.3-578-e0eabcc200-ice36-b8.zip
00:57:31 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-578-e0eabcc200-ice36-b8 /home/omero/workspace/OMERO-training/OMERO.server
00:57:31 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
00:57:31 ++ deactivate nondestructive
00:57:31 ++ '[' -n '' ']'
00:57:31 ++ '[' -n '' ']'
00:57:31 ++ hash -r
00:57:31 ++ '[' -n '' ']'
00:57:31 ++ unset VIRTUAL_ENV
00:57:31 ++ unset VIRTUAL_ENV_PROMPT
00:57:31 ++ '[' '!' nondestructive = nondestructive ']'
00:57:31 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
00:57:31 ++ export VIRTUAL_ENV
00:57:31 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:31 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:31 ++ export PATH
00:57:31 ++ '[' -n '' ']'
00:57:31 ++ '[' -z '' ']'
00:57:31 ++ _OLD_VIRTUAL_PS1=
00:57:31 ++ PS1='(.venv3) '
00:57:31 ++ export PS1
00:57:31 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:57:31 ++ export VIRTUAL_ENV_PROMPT
00:57:31 ++ hash -r
00:57:31 + for x in *.gz
00:57:31 + pip install omero_dropbox-5.7.1.dev0.tar.gz
00:57:31 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:57:31 Installing build dependencies: started
00:57:32 Installing build dependencies: finished with status 'done'
00:57:32 Getting requirements to build wheel: started
00:57:32 Getting requirements to build wheel: finished with status 'done'
00:57:32 Preparing metadata (pyproject.toml): started
00:57:32 Preparing metadata (pyproject.toml): finished with status 'done'
00:57:32 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
00:57:32 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:57:33 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
00:57:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:57:33 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
00:57:33 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:57:33 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0)
00:57:33 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
00:57:33 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:57:33 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
00:57:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:57:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:57:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:57:33 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
00:57:33 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:57:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:57:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:57:33 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
00:57:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:57:33 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:57:33 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:57:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:57:33 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:57:33 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:57:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:57:33 Building wheels for collected packages: omero-dropbox
00:57:33 Building wheel for omero-dropbox (pyproject.toml): started
00:57:33 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:57:33 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=d84e6ab2496fb5cf6bd923af567fe3cc0bb1e2ce9b6b731b1afe984ccd9c907c
00:57:33 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
00:57:33 Successfully built omero-dropbox
00:57:33 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
00:57:36
00:57:36 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
00:57:36 + for x in *.gz
00:57:36 + pip install omero_marshal-0.9.2.dev0.tar.gz
00:57:36 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:57:36 Installing build dependencies: started
00:57:37 Installing build dependencies: finished with status 'done'
00:57:37 Getting requirements to build wheel: started
00:57:37 Getting requirements to build wheel: finished with status 'done'
00:57:37 Preparing metadata (pyproject.toml): started
00:57:37 Preparing metadata (pyproject.toml): finished with status 'done'
00:57:37 Building wheels for collected packages: omero_marshal
00:57:37 Building wheel for omero_marshal (pyproject.toml): started
00:57:38 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:57:38 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88122 sha256=0b1c37dee5e41c59b29e488222d2c16d0cdcc939aca8ac6170e59557985be6c7
00:57:38 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
00:57:38 Successfully built omero_marshal
00:57:38 Installing collected packages: omero_marshal
00:57:38 Successfully installed omero_marshal-0.9.2.dev0
00:57:38 + for x in *.gz
00:57:38 + pip install omero_py-5.22.0.dev0.tar.gz
00:57:38 Processing ./omero_py-5.22.0.dev0.tar.gz
00:57:38 Installing build dependencies: started
00:57:39 Installing build dependencies: finished with status 'done'
00:57:39 Getting requirements to build wheel: started
00:57:40 Getting requirements to build wheel: finished with status 'done'
00:57:40 Preparing metadata (pyproject.toml): started
00:57:40 Preparing metadata (pyproject.toml): finished with status 'done'
00:57:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:57:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:57:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0)
00:57:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:57:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:57:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:57:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:57:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:57:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:57:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:57:40 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
00:57:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:57:40 Building wheels for collected packages: omero-py
00:57:40 Building wheel for omero-py (pyproject.toml): started
00:57:41 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:57:41 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=2558377e615c45bd5028e82beba93c05e5aaa9c22f9035717e8fbf2fb906becf
00:57:41 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
00:57:41 Successfully built omero-py
00:57:41 Installing collected packages: omero-py
00:57:41 Attempting uninstall: omero-py
00:57:41 Found existing installation: omero-py 5.21.3
00:57:41 Uninstalling omero-py-5.21.3:
00:57:42 Successfully uninstalled omero-py-5.21.3
00:57:43 Successfully installed omero-py-5.22.0.dev0
00:57:43 + for x in *.gz
00:57:43 + pip install omero_scripts-5.9.2.dev0.tar.gz
00:57:44 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:57:44 Installing build dependencies: started
00:57:45 Installing build dependencies: finished with status 'done'
00:57:45 Getting requirements to build wheel: started
00:57:45 Getting requirements to build wheel: finished with status 'done'
00:57:45 Preparing metadata (pyproject.toml): started
00:57:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:57:45 Building wheels for collected packages: omero-scripts
00:57:45 Building wheel for omero-scripts (pyproject.toml): started
00:57:45 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:57:45 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=9af98374e69a561ac83e9fc28bdd0f6b1f575549c8e7701601eff1f585cdf159
00:57:45 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
00:57:45 Successfully built omero-scripts
00:57:45 Installing collected packages: omero-scripts
00:57:45 Successfully installed omero-scripts-5.9.2.dev0
00:57:46 + for x in *.gz
00:57:46 + pip install omero_web-5.30.1.dev0.tar.gz
00:57:46 Processing ./omero_web-5.30.1.dev0.tar.gz
00:57:46 Installing build dependencies: started
00:57:47 Installing build dependencies: finished with status 'done'
00:57:47 Getting requirements to build wheel: started
00:57:47 Getting requirements to build wheel: finished with status 'done'
00:57:47 Preparing metadata (pyproject.toml): started
00:57:48 Preparing metadata (pyproject.toml): finished with status 'done'
00:57:48 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
00:57:48 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
00:57:48 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:57:48 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
00:57:48 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
00:57:48 Collecting django-pipeline (from omero-web==5.30.1.dev0)
00:57:48 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:57:48 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
00:57:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:57:48 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
00:57:48 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:57:48 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
00:57:48 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:57:48 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
00:57:48 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.1.0)
00:57:48 Collecting pytz (from omero-web==5.30.1.dev0)
00:57:48 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:57:48 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
00:57:48 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
00:57:48 Collecting importlib-resources (from omero-web==5.30.1.dev0)
00:57:48 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:57:48 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:57:48 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:57:48 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:57:48 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:57:48 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
00:57:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
00:57:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.4.0)
00:57:48 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
00:57:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
00:57:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
00:57:48 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
00:57:48 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
00:57:48 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:57:48 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
00:57:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
00:57:48 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
00:57:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2026.1.4)
00:57:48 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:57:48 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
00:57:48 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:57:48 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:57:48 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:57:48 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:57:48 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:57:48 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:57:48 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:57:48 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:57:48 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:57:48 Building wheels for collected packages: omero-web
00:57:48 Building wheel for omero-web (pyproject.toml): started
00:57:49 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:57:49 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=35e9b7e5f0fcbb8fe8267749b63941eaf6b17e9ac622e5cb35bc5a73ea436cbe
00:57:49 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
00:57:49 Successfully built omero-web
00:57:49 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:57:52
00:57:52 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
00:57:52 + cd /home/omero/workspace/OMERO-training/OMERO.server
00:57:52 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
00:57:52 + HOSTNAME=9aa82dd07910
00:57:52 + PORT=4064
00:57:52 + WEBHOST=http://nginx/web
00:57:52 + SERVER_NAME=omero
00:57:52 + ROOT_PASSWORD=omero
00:57:52 + GROUP_NAME=training_group
00:57:52 + GROUP_NAME_2=training_group-2
00:57:52 + USER_NAME=training_user
00:57:52 + USER_NAME_2=training_user-2
00:57:52 + LIGHTADMIN_USER_NAME=ladmin_user
00:57:52 + USER_PASSWORD=ome
00:57:52 + CONFIG_FILENAME=training_ice.config
00:57:52 + omero login root@9aa82dd07910:4064 -w omero
00:57:53 Created session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:57:53 + omero group add training_group --type read-only --ignore-existing
00:57:54 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:57:54 Group exists: training_group (id=3)
00:57:54 + omero group add training_group-2 --type read-only --ignore-existing
00:57:55 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:57:55 Group exists: training_group-2 (id=4)
00:57:55 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
00:57:56 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:57:56 User exists: training_user (id=2)
00:57:56 + omero user joingroup --name training_user --group-name training_group training_group-2
00:57:57 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:57:57 2 is already in group 3
00:57:57 2 is already in group 4
00:57:57 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
00:57:58 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:57:58 User exists: training_user-2 (id=3)
00:57:58 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
00:57:59 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:57:59 3 is already in group 3
00:57:59 3 is already in group 4
00:57:59 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
00:58:00 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:58:00 User exists: ladmin_user (id=4)
00:58:00 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
00:58:01 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:58:01 4 is already in group 3
00:58:01 4 is already in group 4
00:58:01 ++ omero user info ladmin_user --style plain
00:58:01 ++ cut -d, -f1
00:58:02 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:58:02 + id=4
00:58:02 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
00:58:03 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:58:03 Experimenter:4
00:58:03 + omero logout
00:58:04 + touch test.fake
00:58:04 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group
00:58:04 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:05 + nProjects=1
00:58:05 + nDatasets=2
00:58:05 + echo 'Creating projects and datasets'
00:58:05 Creating projects and datasets
00:58:05 + (( i=1 ))
00:58:05 + (( i<=1 ))
00:58:05 ++ omero obj new Project 'name=Project 1'
00:58:05 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:05 + project=Project:301
00:58:05 + (( j=1 ))
00:58:05 + (( j<=2 ))
00:58:05 ++ omero obj new Dataset 'name=Dataset 1-1'
00:58:08 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:08 + dataset=Dataset:301
00:58:08 + omero obj new ProjectDatasetLink parent=Project:301 child=Dataset:301
00:58:08 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:09 ProjectDatasetLink:301
00:58:09 + echo 'Importing image into dataset'
00:58:09 Importing image into dataset
00:58:09 + omero import -d Dataset:301 test.fake --debug ERROR
00:58:10 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:10 2026-01-05 00:58:10,743 251 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:58:10 2026-01-05 00:58:10,758 266 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
00:58:14 Image:801
00:58:14 Other imported objects:
00:58:14 Fileset:301
00:58:14
00:58:14 ==> Summary
00:58:14 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.104
00:58:14 + (( j++ ))
00:58:14 + (( j<=2 ))
00:58:14 ++ omero obj new Dataset 'name=Dataset 1-2'
00:58:15 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:15 + dataset=Dataset:302
00:58:15 + omero obj new ProjectDatasetLink parent=Project:301 child=Dataset:302
00:58:16 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:16 ProjectDatasetLink:302
00:58:16 + echo 'Importing image into dataset'
00:58:16 Importing image into dataset
00:58:16 + omero import -d Dataset:302 test.fake --debug ERROR
00:58:16 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:17 2026-01-05 00:58:17,513 243 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:58:17 2026-01-05 00:58:17,528 258 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
00:58:19 Image:802
00:58:19 Other imported objects:
00:58:19 Fileset:302
00:58:19
00:58:19 ==> Summary
00:58:19 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.195
00:58:20 + (( j++ ))
00:58:20 + (( j<=2 ))
00:58:20 + (( i++ ))
00:58:20 + (( i<=1 ))
00:58:20 + (( j=1 ))
00:58:20 + (( j<=2 ))
00:58:20 + omero obj new Dataset 'name=Orphaned dataset 1'
00:58:20 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:20 Dataset:303
00:58:20 + (( j++ ))
00:58:20 + (( j<=2 ))
00:58:20 + omero obj new Dataset 'name=Orphaned dataset 2'
00:58:21 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:21 Dataset:304
00:58:21 + (( j++ ))
00:58:21 + (( j<=2 ))
00:58:21 + echo 'Importing image file'
00:58:21 Importing image file
00:58:21 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:58:21 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:58:26 ++ sed -n -e 's/^Image://p' image_import.log
00:58:26 + imageid=803
00:58:26 ++ omero obj new MapAnnotation
00:58:26 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:27 + MAP=MapAnnotation:301
00:58:27 + omero obj map-set MapAnnotation:301 mapValue testkey testvalue
00:58:27 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:28 MapAnnotation:301
00:58:28 + omero obj new ImageAnnotationLink parent=Image:803 child=MapAnnotation:301
00:58:28 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:28 ImageAnnotationLink:301
00:58:29 ++ omero obj new Screen name=Screen
00:58:29 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:30 + screen=Screen:301
00:58:30 ++ omero obj new Plate name=Plate
00:58:30 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:31 + plate=Plate:301
00:58:31 + omero obj new ScreenPlateLink parent=Screen:301 child=Plate:301
00:58:31 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:31 ScreenPlateLink:301
00:58:32 + echo 'Importing SPW file'
00:58:32 Importing SPW file
00:58:32 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
00:58:32 + omero import -r Screen:301 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
00:58:37 ++ sed -n -e 's/^Plate://p' plate_import.log
00:58:37 + plateid=302
00:58:37 + omero logout
00:58:37 + omero login training_user-2@9aa82dd07910:4064 -w ome -g training_group
00:58:38 Created session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:38 + omero obj new Project 'name=Project 0'
00:58:39 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:39 Project:302
00:58:39 + omero obj new Dataset 'name=Dataset 0'
00:58:40 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:40 Dataset:305
00:58:40 + omero import test.fake --debug ERROR
00:58:41 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:42 2026-01-05 00:58:42,208 251 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:58:42 2026-01-05 00:58:42,231 274 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
00:58:44 Image:807
00:58:44 Other imported objects:
00:58:44 Fileset:305
00:58:44
00:58:44 ==> Summary
00:58:44 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.720
00:58:44 + omero obj new Screen name=Screen
00:58:45 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:45 Screen:302
00:58:45 + omero obj new Plate name=Plate
00:58:46 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:58:46 Plate:303
00:58:46 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group-2
00:58:47 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
00:58:47 + omero obj new Project 'name=Project 0'
00:58:48 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
00:58:48 Project:303
00:58:48 + omero obj new Dataset 'name=Dataset 0'
00:58:48 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
00:58:48 Dataset:306
00:58:49 + omero import test.fake --debug ERROR
00:58:49 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
00:58:50 2026-01-05 00:58:50,488 252 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:58:50 2026-01-05 00:58:50,503 267 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 57e856cab00a66dc41c786dd81bc18344f5a6d69 date: 5 January 2026
00:58:52 Image:808
00:58:52 Other imported objects:
00:58:52 Fileset:306
00:58:52
00:58:52 ==> Summary
00:58:52 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.749
00:58:52 + omero obj new Screen name=Screen
00:58:53 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
00:58:53 Screen:303
00:58:53 + omero obj new Plate name=Plate
00:58:54 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
00:58:54 Plate:304
00:58:54 + omero logout
00:58:55 + echo omero.host=9aa82dd07910
00:58:55 + echo omero.port=4064
00:58:55 + echo omero.webhost=http://nginx/web
00:58:55 + echo omero.servername=omero
00:58:55 + echo omero.user=training_user
00:58:55 + echo omero.pass=ome
00:58:55 + echo omero.group=training_group
00:58:55 + echo omero.projectid=301
00:58:55 + echo omero.datasetid=302
00:58:55 + echo omero.imageid=803
00:58:55 + echo omero.plateid=302
00:58:55 + echo omero.screenid=301
00:58:55 + echo omero.group2=training_group-2
00:58:55 + echo omero.ladmin=ladmin_user
00:58:55 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:58:55 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
00:58:55 + omero sessions clear
00:58:56 1 session(s) cleared
00:58:56 !! 01/05/26 00:58:56.258 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
00:58:56 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
00:58:56 + pip install --upgrade requests
00:58:56 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
00:58:56 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
00:58:56 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
00:58:56 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
00:58:56 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.1.4)
00:58:56 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
00:59:06 Running training suite
00:59:06 created 20 shapes
00:59:06 retrieved 20 shapes in 4 batches
00:59:06 Current user:
00:59:06 ID: 2
00:59:06 Username: training_user
00:59:06 Full Name: training_user training_user
00:59:06 Is Admin: False
00:59:06 []
00:59:06 Member of:
00:59:06 ID: 3 Name: training_group
00:59:06 ID: 4 Name: training_group-2
00:59:06 Current group: training_group
00:59:06 Group owners:
00:59:06 Group members:
00:59:06 ID: 2 UserName: training_user Name: training_user training_user
00:59:06 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
00:59:06 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
00:59:06 Owner of:
00:59:06 Admins:
00:59:06 ID: 0 UserName: root Name: root root
00:59:06 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
00:59:06 Created new Image:809 Name:"numpy image"
00:59:06 newPlane for z,t: 0 0 uint8 0 127
00:59:06 newPlane for z,t: 0 1 uint8 0 127
00:59:06 newPlane for z,t: 0 2 uint8 0 127
00:59:06 newPlane for z,t: 0 3 uint8 0 127
00:59:06 newPlane for z,t: 0 4 uint8 0 127
00:59:06 newPlane for z,t: 0 5 uint8 0 127
00:59:06 newPlane for z,t: 0 6 uint8 0 127
00:59:06 newPlane for z,t: 0 7 uint8 0 127
00:59:06 newPlane for z,t: 0 8 uint8 0 127
00:59:06 newPlane for z,t: 0 9 uint8 0 127
00:59:06 newPlane for z,t: 1 0 uint8 0 127
00:59:06 newPlane for z,t: 1 1 uint8 0 127
00:59:06 newPlane for z,t: 1 2 uint8 0 127
00:59:06 newPlane for z,t: 1 3 uint8 0 127
00:59:06 newPlane for z,t: 1 4 uint8 0 127
00:59:06 newPlane for z,t: 1 5 uint8 0 127
00:59:06 newPlane for z,t: 1 6 uint8 0 127
00:59:06 newPlane for z,t: 1 7 uint8 0 127
00:59:06 newPlane for z,t: 1 8 uint8 0 127
00:59:06 newPlane for z,t: 1 9 uint8 0 127
00:59:06 newPlane for z,t: 2 0 uint8 0 127
00:59:06 newPlane for z,t: 2 1 uint8 0 127
00:59:06 newPlane for z,t: 2 2 uint8 0 127
00:59:06 newPlane for z,t: 2 3 uint8 0 127
00:59:06 newPlane for z,t: 2 4 uint8 0 127
00:59:06 newPlane for z,t: 2 5 uint8 0 127
00:59:06 newPlane for z,t: 2 6 uint8 0 127
00:59:06 newPlane for z,t: 2 7 uint8 0 127
00:59:06 newPlane for z,t: 2 8 uint8 0 127
00:59:06 newPlane for z,t: 2 9 uint8 0 127
00:59:06 newPlane for z,t: 3 0 uint8 0 127
00:59:06 newPlane for z,t: 3 1 uint8 0 127
00:59:06 newPlane for z,t: 3 2 uint8 0 127
00:59:06 newPlane for z,t: 3 3 uint8 0 127
00:59:06 newPlane for z,t: 3 4 uint8 0 127
00:59:06 newPlane for z,t: 3 5 uint8 0 127
00:59:06 newPlane for z,t: 3 6 uint8 0 127
00:59:06 newPlane for z,t: 3 7 uint8 0 127
00:59:06 newPlane for z,t: 3 8 uint8 0 127
00:59:06 newPlane for z,t: 3 9 uint8 0 127
00:59:06 newPlane for z,t: 4 0 uint8 0 127
00:59:06 newPlane for z,t: 4 1 uint8 0 127
00:59:06 newPlane for z,t: 4 2 uint8 0 127
00:59:06 newPlane for z,t: 4 3 uint8 0 127
00:59:06 newPlane for z,t: 4 4 uint8 0 127
00:59:06 newPlane for z,t: 4 5 uint8 0 127
00:59:06 newPlane for z,t: 4 6 uint8 0 127
00:59:06 newPlane for z,t: 4 7 uint8 0 127
00:59:06 newPlane for z,t: 4 8 uint8 0 127
00:59:06 newPlane for z,t: 4 9 uint8 0 127
00:59:06 Deleting, please wait.
00:59:06 Error? False
00:59:06 803 test&sizeT=10&sizeZ=5&sizeC=3.fake
00:59:06 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2026-01/05/00-58-24.358/ test&sizeT=10&sizeZ=5&sizeC=3.fake
00:59:06 1
00:59:06 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2026-01/05/00-58-24.358/ test&sizeT=10&sizeZ=5&sizeC=3.fake
00:59:06 Current group: training_group
00:59:06 Permissions: READ-ONLY (rwr---)
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Project 0 Owner: training_user-2 training_user-2
00:59:06 Project 1 Owner: training_user training_user
00:59:06 Image: <_ImageWrapper id=803>
00:59:06 Image: <_ImageWrapper id=803> Group: training_group 3
00:59:06 Image: <_ImageWrapper id=803> Channel: 0
00:59:06 Channel: 1
00:59:06 Channel: 2
00:59:06
00:59:06
00:59:06 original_metadata
00:59:06 global_metadata
00:59:06 series_metadata
00:59:06
00:59:06 Plane at zct: 0 0 0
00:59:06 [[ 0 0 0 ... 253 254 255]
00:59:06 [ 0 0 0 ... 253 254 255]
00:59:06 [ 0 0 0 ... 253 254 255]
00:59:06 ...
00:59:06 [ 0 1 2 ... 253 254 255]
00:59:06 [ 0 1 2 ... 253 254 255]
00:59:06 [ 0 1 2 ... 253 254 255]]
00:59:06 shape: (512, 512)
00:59:06 min: 0 max: 255 pixel type: uint8
00:59:06
00:59:06 Z stack of tiles:
00:59:06 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
00:59:06 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
00:59:06 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
00:59:06 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
00:59:06 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
00:59:06
00:59:06 Hyper stack of planes:
00:59:06 plane zct: (2, 0, 0) min: 0 max: 255
00:59:06 plane zct: (2, 0, 1) min: 0 max: 255
00:59:06 plane zct: (2, 0, 2) min: 0 max: 255
00:59:06 plane zct: (2, 0, 3) min: 0 max: 255
00:59:06 plane zct: (2, 0, 4) min: 0 max: 255
00:59:06 plane zct: (2, 0, 5) min: 0 max: 255
00:59:06 plane zct: (2, 0, 6) min: 0 max: 255
00:59:06 plane zct: (2, 0, 7) min: 0 max: 255
00:59:06 plane zct: (2, 0, 8) min: 0 max: 255
00:59:06 plane zct: (2, 0, 9) min: 0 max: 255
00:59:06 plane zct: (2, 1, 0) min: 0 max: 255
00:59:06 plane zct: (2, 1, 1) min: 0 max: 255
00:59:06 plane zct: (2, 1, 2) min: 0 max: 255
00:59:06 plane zct: (2, 1, 3) min: 0 max: 255
00:59:06 plane zct: (2, 1, 4) min: 0 max: 255
00:59:06 plane zct: (2, 1, 5) min: 0 max: 255
00:59:06 plane zct: (2, 1, 6) min: 0 max: 255
00:59:06 plane zct: (2, 1, 7) min: 0 max: 255
00:59:06 plane zct: (2, 1, 8) min: 0 max: 255
00:59:06 plane zct: (2, 1, 9) min: 0 max: 255
00:59:06 plane zct: (2, 2, 0) min: 0 max: 255
00:59:06 plane zct: (2, 2, 1) min: 0 max: 255
00:59:06 plane zct: (2, 2, 2) min: 0 max: 255
00:59:06 plane zct: (2, 2, 3) min: 0 max: 255
00:59:06 plane zct: (2, 2, 4) min: 0 max: 255
00:59:06 plane zct: (2, 2, 5) min: 0 max: 255
00:59:06 plane zct: (2, 2, 6) min: 0 max: 255
00:59:06 plane zct: (2, 2, 7) min: 0 max: 255
00:59:06 plane zct: (2, 2, 8) min: 0 max: 255
00:59:06 plane zct: (2, 2, 9) min: 0 max: 255
00:59:06 plane zct: (3, 0, 0) min: 0 max: 255
00:59:06 plane zct: (3, 0, 1) min: 0 max: 255
00:59:06 plane zct: (3, 0, 2) min: 0 max: 255
00:59:06 plane zct: (3, 0, 3) min: 0 max: 255
00:59:06 plane zct: (3, 0, 4) min: 0 max: 255
00:59:06 plane zct: (3, 0, 5) min: 0 max: 255
00:59:06 plane zct: (3, 0, 6) min: 0 max: 255
00:59:06 plane zct: (3, 0, 7) min: 0 max: 255
00:59:06 plane zct: (3, 0, 8) min: 0 max: 255
00:59:06 plane zct: (3, 0, 9) min: 0 max: 255
00:59:06 plane zct: (3, 1, 0) min: 0 max: 255
00:59:06 plane zct: (3, 1, 1) min: 0 max: 255
00:59:06 plane zct: (3, 1, 2) min: 0 max: 255
00:59:06 plane zct: (3, 1, 3) min: 0 max: 255
00:59:06 plane zct: (3, 1, 4) min: 0 max: 255
00:59:06 plane zct: (3, 1, 5) min: 0 max: 255
00:59:06 plane zct: (3, 1, 6) min: 0 max: 255
00:59:06 plane zct: (3, 1, 7) min: 0 max: 255
00:59:06 plane zct: (3, 1, 8) min: 0 max: 255
00:59:06 plane zct: (3, 1, 9) min: 0 max: 255
00:59:06 plane zct: (3, 2, 0) min: 0 max: 255
00:59:06 plane zct: (3, 2, 1) min: 0 max: 255
00:59:06 plane zct: (3, 2, 2) min: 0 max: 255
00:59:06 plane zct: (3, 2, 3) min: 0 max: 255
00:59:06 plane zct: (3, 2, 4) min: 0 max: 255
00:59:06 plane zct: (3, 2, 5) min: 0 max: 255
00:59:06 plane zct: (3, 2, 6) min: 0 max: 255
00:59:06 plane zct: (3, 2, 7) min: 0 max: 255
00:59:06 plane zct: (3, 2, 8) min: 0 max: 255
00:59:06 plane zct: (3, 2, 9) min: 0 max: 255
00:59:06 plane zct: (4, 0, 0) min: 0 max: 255
00:59:06 plane zct: (4, 0, 1) min: 0 max: 255
00:59:06 plane zct: (4, 0, 2) min: 0 max: 255
00:59:06 plane zct: (4, 0, 3) min: 0 max: 255
00:59:06 plane zct: (4, 0, 4) min: 0 max: 255
00:59:06 plane zct: (4, 0, 5) min: 0 max: 255
00:59:06 plane zct: (4, 0, 6) min: 0 max: 255
00:59:06 plane zct: (4, 0, 7) min: 0 max: 255
00:59:06 plane zct: (4, 0, 8) min: 0 max: 255
00:59:06 plane zct: (4, 0, 9) min: 0 max: 255
00:59:06 plane zct: (4, 1, 0) min: 0 max: 255
00:59:06 plane zct: (4, 1, 1) min: 0 max: 255
00:59:06 plane zct: (4, 1, 2) min: 0 max: 255
00:59:06 plane zct: (4, 1, 3) min: 0 max: 255
00:59:06 plane zct: (4, 1, 4) min: 0 max: 255
00:59:06 plane zct: (4, 1, 5) min: 0 max: 255
00:59:06 plane zct: (4, 1, 6) min: 0 max: 255
00:59:06 plane zct: (4, 1, 7) min: 0 max: 255
00:59:06 plane zct: (4, 1, 8) min: 0 max: 255
00:59:06 plane zct: (4, 1, 9) min: 0 max: 255
00:59:06 plane zct: (4, 2, 0) min: 0 max: 255
00:59:06 plane zct: (4, 2, 1) min: 0 max: 255
00:59:06 plane zct: (4, 2, 2) min: 0 max: 255
00:59:06 plane zct: (4, 2, 3) min: 0 max: 255
00:59:06 plane zct: (4, 2, 4) min: 0 max: 255
00:59:06 plane zct: (4, 2, 5) min: 0 max: 255
00:59:06 plane zct: (4, 2, 6) min: 0 max: 255
00:59:06 plane zct: (4, 2, 7) min: 0 max: 255
00:59:06 plane zct: (4, 2, 8) min: 0 max: 255
00:59:06 plane zct: (4, 2, 9) min: 0 max: 255
00:59:06 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
00:59:06
00:59:06 List Projects:
00:59:06 ==================================================
00:59:06 Project:1 Name:"Project 1" (owner=training_user)
00:59:06 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
00:59:06 Image:1 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
00:59:06 Image:12 Name:"New Image" (owner=training_user)
00:59:06 Image:2 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:7 Name:"New Dataset" (owner=training_user)
00:59:06 Project:7 Name:"Project 1" (owner=training_user)
00:59:06 Dataset:13 Name:"Dataset 1-1" (owner=training_user)
00:59:06 Image:13 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:14 Name:"Dataset 1-2" (owner=training_user)
00:59:06 Image:24 Name:"New Image" (owner=training_user)
00:59:06 Image:25 Name:"newImageFrom15" (owner=training_user)
00:59:06 Image:14 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:19 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:29 Name:"new Name 1" (owner=training_user)
00:59:06 Dataset:30 Name:"new Name 2" (owner=training_user)
00:59:06 Project:51 Name:"Project 1" (owner=training_user)
00:59:06 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
00:59:06 Image:551 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
00:59:06 Image:562 Name:"New Image" (owner=training_user)
00:59:06 Image:563 Name:"newImageFrom553" (owner=training_user)
00:59:06 Image:552 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:57 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:67 Name:"new Name 1" (owner=training_user)
00:59:06 Dataset:68 Name:"new Name 2" (owner=training_user)
00:59:06 Project:101 Name:"Project 1" (owner=training_user)
00:59:06 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
00:59:06 Image:601 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
00:59:06 Image:612 Name:"New Image" (owner=training_user)
00:59:06 Image:613 Name:"newImageFrom603" (owner=training_user)
00:59:06 Image:602 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:107 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:117 Name:"new Name 1" (owner=training_user)
00:59:06 Dataset:118 Name:"new Name 2" (owner=training_user)
00:59:06 Project:151 Name:"Project 1" (owner=training_user)
00:59:06 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
00:59:06 Image:651 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
00:59:06 Image:662 Name:"New Image" (owner=training_user)
00:59:06 Image:663 Name:"newImageFrom653" (owner=training_user)
00:59:06 Image:652 Name:"test.fake" (owner=training_user)
00:59:06 Dataset:157 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:167 Name:"new Name 1" (owner=training_user)
00:59:06 Dataset:168 Name:"new Name 2" (owner=training_user)
00:59:06
00:59:06 List orphaned Datasets:
00:59:06 ==================================================
00:59:06 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
00:59:06 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:10 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:9 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:8 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:11 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:12 Name:"New Dataset2" (owner=training_user)
00:59:06 Dataset:17 Name:"Dataset 0" (owner=training_user-2)
00:59:06 Dataset:25 Name:"FileAnnotationDelete" (owner=training_user)
00:59:06 Dataset:22 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:21 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:20 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:23 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:24 Name:"New Dataset2" (owner=training_user)
00:59:06 Dataset:26 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:27 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:28 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
00:59:06 Dataset:64 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:65 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:66 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
00:59:06 Dataset:60 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:59 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:58 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:61 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:62 Name:"New Dataset2" (owner=training_user)
00:59:06 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
00:59:06 Dataset:110 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:109 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:108 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:111 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:112 Name:"New Dataset2" (owner=training_user)
00:59:06 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
00:59:06 Dataset:114 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:115 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:116 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
00:59:06 Dataset:160 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:159 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:158 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:161 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:162 Name:"New Dataset2" (owner=training_user)
00:59:06 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
00:59:06 Dataset:164 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:165 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:166 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:205 Name:"Dataset 0" (owner=training_user-2)
00:59:06 Dataset:210 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:209 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:208 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:211 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:212 Name:"New Dataset2" (owner=training_user)
00:59:06 Dataset:253 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:254 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:255 Name:"Dataset 0" (owner=training_user-2)
00:59:06 Dataset:260 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:259 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:258 Name:"MyDataset" (owner=training_user)
00:59:06 Dataset:261 Name:"New Dataset" (owner=training_user)
00:59:06 Dataset:262 Name:"New Dataset2" (owner=training_user)
00:59:06 Dataset:303 Name:"Orphaned dataset 1" (owner=training_user)
00:59:06 Dataset:304 Name:"Orphaned dataset 2" (owner=training_user)
00:59:06 Dataset:305 Name:"Dataset 0" (owner=training_user-2)
00:59:06
00:59:06 Images in Dataset: 302
00:59:06 ==================================================
00:59:06 Image:802 Name:"test.fake" (owner=training_user)
00:59:06
00:59:06 Image:803
00:59:06 ==================================================
00:59:06 test&sizeT=10&sizeZ=5&sizeC=3.fake
00:59:06 X: 512
00:59:06 Y: 512
00:59:06 Z: 5
00:59:06 C: 3
00:59:06 T: 10
00:59:06 Channel: 0 Color: (255, 0, 0)
00:59:06 Lookup table: None
00:59:06 Is reverse intensity? False
00:59:06 Channel: 1 Color: (0, 255, 0)
00:59:06 Lookup table: None
00:59:06 Is reverse intensity? False
00:59:06 Channel: 2 Color: (0, 0, 255)
00:59:06 Lookup table: None
00:59:06 Is reverse intensity? False
00:59:06 Pixel Size X: None
00:59:06
00:59:06 List Screens:
00:59:06 ==================================================
00:59:06 Screen:1 Name:"Screen" (owner=training_user)
00:59:06 Plate:1 Name:"Plate" (owner=training_user)
00:59:06 Plate:2 Name:"Plate Name 0" (owner=training_user)
00:59:06 Screen:4 Name:"Screen" (owner=training_user)
00:59:06 Plate:5 Name:"Plate" (owner=training_user)
00:59:06 Plate:6 Name:"Plate Name 0" (owner=training_user)
00:59:06 Screen:51 Name:"Screen" (owner=training_user)
00:59:06 Plate:51 Name:"Plate" (owner=training_user)
00:59:06 Plate:52 Name:"Plate Name 0" (owner=training_user)
00:59:06 Screen:101 Name:"Screen" (owner=training_user)
00:59:06 Plate:101 Name:"Plate" (owner=training_user)
00:59:06 Plate:102 Name:"Plate Name 0" (owner=training_user)
00:59:06 Screen:151 Name:"Screen" (owner=training_user)
00:59:06 Plate:151 Name:"Plate" (owner=training_user)
00:59:06 Plate:152 Name:"Plate Name 0" (owner=training_user)
00:59:06 Screen:201 Name:"Screen" (owner=training_user)
00:59:06 Plate:201 Name:"Plate" (owner=training_user)
00:59:11 Plate:202 Name:"Plate Name 0" (owner=training_user)
00:59:11 Screen:251 Name:"Screen" (owner=training_user)
00:59:11 Plate:251 Name:"Plate" (owner=training_user)
00:59:11 Plate:252 Name:"Plate Name 0" (owner=training_user)
00:59:11 Screen:301 Name:"Screen" (owner=training_user)
00:59:11 Plate:301 Name:"Plate" (owner=training_user)
00:59:11 Plate:302 Name:"Plate Name 0" (owner=training_user)
00:59:11 Screen:2 Name:"Screen" (owner=training_user-2)
00:59:11 Screen:5 Name:"Screen" (owner=training_user-2)
00:59:11 Screen:52 Name:"Screen" (owner=training_user-2)
00:59:11 Screen:102 Name:"Screen" (owner=training_user-2)
00:59:11 Screen:152 Name:"Screen" (owner=training_user-2)
00:59:11 Screen:202 Name:"Screen" (owner=training_user-2)
00:59:11 Screen:252 Name:"Screen" (owner=training_user-2)
00:59:11 Screen:302 Name:"Screen" (owner=training_user-2)
00:59:11
00:59:11 Plate:302
00:59:11 ==================================================
00:59:11
00:59:11 Number of fields: (0, 0)
00:59:11
00:59:11 Grid size: {'rows': 1, 'columns': 3}
00:59:11
00:59:11 Wells in Plate: Plate Name 0
00:59:11 Well: 0 0 Fields: 1
00:59:11 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 804
00:59:11 Well: 0 1 Fields: 1
00:59:11 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 805
00:59:11 Well: 0 2 Fields: 1
00:59:11 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 806
00:59:11 301 <class 'omero.model.MapAnnotationI'>
00:59:11 added by training_user
00:59:11 Image ID: 803
00:59:11 Annotation ID: 301
00:59:11 803
00:59:11 Channel rendering settings:
00:59:11 Name: 0
00:59:11 Color: FF0000
00:59:11 Active: True
00:59:11 Levels: 0.0 - 255.0
00:59:11 Name: 1
00:59:11 Color: 00FF00
00:59:11 Active: True
00:59:11 Levels: 0.0 - 255.0
00:59:11 Name: 2
00:59:11 Color: 0000FF
00:59:11 Active: True
00:59:11 Levels: 0.0 - 255.0
00:59:11 isGreyscaleRenderingModel: False
00:59:11 Default Z/T positions:
00:59:11 Z = 2, T = 0
00:59:11 Rendering Defs on Image:
00:59:11 ID: 403 (owner: training_user training_user)
00:59:11 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
00:59:11 ROI: ID: 302
00:59:11 Shape: id 371 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
00:59:11 Shape: id 372 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
00:59:11 ROI: ID: 303
00:59:11 Shape: id 373 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
00:59:11 ROI: ID: 304
00:59:11 Shape: id 374 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
00:59:11 ROI: ID: 305
00:59:11 Shape: id 375 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
00:59:11 ROI: ID: 306
00:59:11 <class 'omero.model.PolygonI'> Not supported by this code
00:59:11 Shape: id 376 theT 0 theZ 2 textValue test-Polygon
00:59:11 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
00:59:11 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
00:59:11 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
00:59:11 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
00:59:11 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
00:59:11 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
00:59:11 Removing Shape from ROI...
00:59:11 Deleting ROI: 307
00:59:11 Table Columns:
00:59:11 Uid
00:59:11 MyStringColumnInit
00:59:11 Row count: 10
00:59:11
00:59:11 Get All Data for rows: [3, 5, 7]
00:59:11 Data for Column: Uid
00:59:11 1
00:59:11 2
00:59:11 3
00:59:11 4
00:59:11 5
00:59:11 6
00:59:11 7
00:59:11 8
00:59:11 9
00:59:11 10
00:59:11 Data for Column: MyStringColumnInit
00:59:11 one
00:59:11 two
00:59:11 three
00:59:11 four
00:59:11 five
00:59:11 six
00:59:11 seven
00:59:11 eight
00:59:11 nine
00:59:11 ten
00:59:11
00:59:11 Get All Data for rows with slice: [3, 5, 7]
00:59:11 Data for Column: Uid
00:59:11 4
00:59:11 6
00:59:11 8
00:59:11 Data for Column: MyStringColumnInit
00:59:11 four
00:59:11 six
00:59:11 eight
00:59:11
00:59:11 Get Data for cols: [1] and between rows: 3 - 7
00:59:11 Data for Column: MyStringColumnInit
00:59:11 four
00:59:11 five
00:59:11 six
00:59:11 seven
00:59:11
00:59:11 Get Data for cols: [1] and between rows: 3 - 7 with slice
00:59:11 Data for Column: MyStringColumnInit
00:59:11 four
00:59:11 five
00:59:11 six
00:59:11 seven
00:59:11 Query Results for Column: Uid
00:59:11 3
00:59:11 4
00:59:11 5
00:59:11 6
00:59:11 7
00:59:11 8
00:59:11 Query Results for Column: MyStringColumnInit
00:59:11 three
00:59:11 four
00:59:11 five
00:59:11 six
00:59:11 seven
00:59:11 eight
00:59:11 Opened table with row-count: 10
00:59:11 New dataset, Id: 307
00:59:11 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
00:59:11 305 <class 'omero.model.TagAnnotationI'> added by training_user
00:59:11 Tag value: New Tag
00:59:11 306 <class 'omero.model.MapAnnotationI'> added by training_user
00:59:11
00:59:11 Creating an OriginalFile and FileAnnotation
00:59:11 Attaching FileAnnotation to Dataset: File ID: 307 , README.txt Size: 15
00:59:11
00:59:11 Annotations on Dataset: New Dataset
00:59:11 File ID: 904 README.txt Size: 15
00:59:11
00:59:11 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
00:59:11 File downloaded!
00:59:11 157 README.txt
00:59:11 20 README.txt
00:59:11 207 README.txt
00:59:11 307 README.txt
00:59:11 257 README.txt
00:59:11 7 README.txt
00:59:11 57 README.txt
00:59:11 107 README.txt
00:59:11 Found Annotation with namespace: imperial.training.demo
00:59:11 Plane: 0 0 0
00:59:11 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
00:59:11 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
00:59:11
00:59:11 List Datasets:
00:59:11 ID: 310 Name: MyDataset
00:59:11 ID: 309 Name: MyDataset
00:59:11 ID: 308 Name: MyDataset
00:59:11 ID: 260 Name: MyDataset
00:59:11 ID: 259 Name: MyDataset
00:59:11 ID: 258 Name: MyDataset
00:59:11 ID: 210 Name: MyDataset
00:59:11 ID: 209 Name: MyDataset
00:59:11 ID: 208 Name: MyDataset
00:59:11 ID: 166 Name: MyDataset
00:59:11 ID: 165 Name: MyDataset
00:59:11 ID: 164 Name: MyDataset
00:59:11 ID: 160 Name: MyDataset
00:59:11 ID: 159 Name: MyDataset
00:59:11 ID: 158 Name: MyDataset
00:59:11 ID: 116 Name: MyDataset
00:59:11 ID: 115 Name: MyDataset
00:59:11 ID: 114 Name: MyDataset
00:59:11 ID: 110 Name: MyDataset
00:59:11 ID: 109 Name: MyDataset
00:59:11 ID: 108 Name: MyDataset
00:59:11 ID: 66 Name: MyDataset
00:59:11 ID: 65 Name: MyDataset
00:59:11 ID: 64 Name: MyDataset
00:59:11 ID: 60 Name: MyDataset
00:59:11 ID: 59 Name: MyDataset
00:59:11 ID: 58 Name: MyDataset
00:59:11 ID: 28 Name: MyDataset
00:59:11 ID: 27 Name: MyDataset
00:59:11 ID: 26 Name: MyDataset
00:59:11 ID: 22 Name: MyDataset
00:59:11 ID: 21 Name: MyDataset
00:59:11 ID: 20 Name: MyDataset
00:59:11 ID: 10 Name: MyDataset
00:59:11 ID: 9 Name: MyDataset
00:59:11 ID: 8 Name: MyDataset
00:59:11
00:59:11 List Tags:
00:59:11 ID: 8 Text: MyTag Desc: MyTag 0
00:59:11 ID: 9 Text: MyTag Desc: MyTag 1
00:59:11 ID: 10 Text: MyTag Desc: MyTag 2
00:59:11 ID: 21 Text: MyTag Desc: MyTag 0
00:59:11 ID: 22 Text: MyTag Desc: MyTag 1
00:59:11 ID: 23 Text: MyTag Desc: MyTag 2
00:59:11 ID: 29 Text: MyTag Desc: MyTag 0
00:59:11 ID: 30 Text: MyTag Desc: MyTag 1
00:59:11 ID: 31 Text: MyTag Desc: MyTag 2
00:59:11 ID: 58 Text: MyTag Desc: MyTag 0
00:59:11 ID: 59 Text: MyTag Desc: MyTag 1
00:59:11 ID: 60 Text: MyTag Desc: MyTag 2
00:59:11 ID: 66 Text: MyTag Desc: MyTag 0
00:59:11 ID: 67 Text: MyTag Desc: MyTag 1
00:59:11 ID: 68 Text: MyTag Desc: MyTag 2
00:59:11 ID: 108 Text: MyTag Desc: MyTag 0
00:59:11 ID: 109 Text: MyTag Desc: MyTag 1
00:59:11 ID: 110 Text: MyTag Desc: MyTag 2
00:59:11 ID: 116 Text: MyTag Desc: MyTag 0
00:59:11 ID: 117 Text: MyTag Desc: MyTag 1
00:59:11 ID: 118 Text: MyTag Desc: MyTag 2
00:59:11 ID: 158 Text: MyTag Desc: MyTag 0
00:59:11 ID: 159 Text: MyTag Desc: MyTag 1
00:59:11 ID: 160 Text: MyTag Desc: MyTag 2
00:59:11 ID: 166 Text: MyTag Desc: MyTag 0
00:59:11 ID: 167 Text: MyTag Desc: MyTag 1
00:59:11 ID: 168 Text: MyTag Desc: MyTag 2
00:59:11 ID: 208 Text: MyTag Desc: MyTag 0
00:59:11 ID: 209 Text: MyTag Desc: MyTag 1
00:59:11 ID: 210 Text: MyTag Desc: MyTag 2
00:59:11 ID: 258 Text: MyTag Desc: MyTag 0
00:59:11 ID: 259 Text: MyTag Desc: MyTag 1
00:59:11 ID: 260 Text: MyTag Desc: MyTag 2
00:59:11 ID: 308 Text: MyTag Desc: MyTag 0
00:59:11 ID: 309 Text: MyTag Desc: MyTag 1
00:59:11 ID: 310 Text: MyTag Desc: MyTag 2
00:59:11 New dataset, Id: 311
00:59:11 New dataset 2, Id: 312
00:59:11 test&sizeT=10&sizeZ=5&sizeC=3.fake
00:59:11 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
00:59:11 [[ 0 0 0 ... 102 103 104]
00:59:11 [ 0 0 0 ... 102 103 104]
00:59:11 [ 0 0 0 ... 102 103 104]
00:59:11 ...
00:59:11 [ 5 6 7 ... 102 103 104]
00:59:11 [ 5 6 7 ... 102 103 104]
00:59:11 [ 5 6 7 ... 102 103 104]]
00:59:11 shape: (100, 100)
00:59:11 min: 0 max: 104 pixel type: uint8
00:59:11 Average : 53.9125
00:59:11 Getting data for T, tile: 0 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 1 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 2 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 3 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 4 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 5 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 6 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 7 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 8 (256, 0, 10, 512)
00:59:11 Getting data for T, tile: 9 (256, 0, 10, 512)
00:59:11 kymograph_data (512, 100)
00:59:11 Attaching kymograph.png to image
00:59:11 test&sizeT=10&sizeZ=5&sizeC=3.fake
00:59:11 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
00:59:11 [[ 0 0 0 ... 102 103 104]
00:59:11 [ 0 0 0 ... 102 103 104]
00:59:11 [ 0 0 0 ... 102 103 104]
00:59:11 ...
00:59:11 [ 5 6 7 ... 102 103 104]
00:59:11 [ 5 6 7 ... 102 103 104]
00:59:11 [ 5 6 7 ... 102 103 104]]
00:59:14 shape: (100, 100)
00:59:14 min: 0 max: 104 pixel type: uint8
00:59:14 Average : 53.9125
00:59:14 Getting data for T, tile: 0 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 1 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 2 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 3 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 4 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 5 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 6 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 7 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 8 (256, 0, 10, 512)
00:59:14 Getting data for T, tile: 9 (256, 0, 10, 512)
00:59:14 kymograph_data (512, 100)
00:59:14 Attaching kymograph.png to image
00:59:14 No file downloaded. Project not rated.
00:59:14 New image, Id: 812
00:59:14 Starting at: http://nginx/web/api/
00:59:14 CSRF token ebPQLTDwpi3Z78Pcyn263XhBySc2RLFe
00:59:14 Servers:
00:59:14 -id: 1
00:59:14 name: omero
00:59:14 host: omero
00:59:14 port: 4064
00:59:14 -id: 2
00:59:14 name: testintegration
00:59:14 host: testintegration
00:59:14 port: 14064
00:59:14 eventContext {'sessionId': 820, 'sessionUuid': '0d65ce99-87f9-4682-809d-f7e9370d1231', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
00:59:14 Projects:
00:59:14 2 Project 0
00:59:14 3 Project 0
00:59:14 Created Project: 306 API TEST foo
00:59:14 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 306, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/306/datasets/'}}
00:59:14 !! 01/05/26 00:59:14.294 error: communicator not destroyed during global destruction.+ deactivate
00:59:14 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:59:14 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:59:14 + export PATH
00:59:14 + unset _OLD_VIRTUAL_PATH
00:59:14 + '[' -n '' ']'
00:59:14 + hash -r
00:59:14 + '[' -n '' ']'
00:59:14 + unset VIRTUAL_ENV
00:59:14 + unset VIRTUAL_ENV_PROMPT
00:59:14 + '[' '!' '' = nondestructive ']'
00:59:14 + unset -f deactivate
00:59:14 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
00:59:14 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
00:59:16 Note: Some input files use unchecked or unsafe operations.
00:59:16 Note: Recompile with -Xlint:unchecked for details.
00:59:16 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
00:59:16 Error: LinkageError occurred while loading main class training.Setup
00:59:16 java.lang.UnsupportedClassVersionError: training/Setup has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
00:59:16 Build step 'Execute shell' marked build as failure
00:59:16 Finished: FAILURE
