12:46:14 Started by upstream project "Trigger" build number 18
12:46:14 originally caused by:
12:46:14 Started by user devspace
12:46:14 Running as SYSTEM
12:46:14 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
12:46:14 [OMERO-training] $ /bin/bash -xe /tmp/jenkins14800932502669488006.sh
12:46:14 + rm -rf /home/omero/workspace/OMERO-training/.venv3
12:47:56 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
12:48:17 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
12:48:17 ++ deactivate nondestructive
12:48:17 ++ '[' -n '' ']'
12:48:17 ++ '[' -n '' ']'
12:48:17 ++ hash -r
12:48:17 ++ '[' -n '' ']'
12:48:17 ++ unset VIRTUAL_ENV
12:48:17 ++ unset VIRTUAL_ENV_PROMPT
12:48:17 ++ '[' '!' nondestructive = nondestructive ']'
12:48:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
12:48:17 ++ export VIRTUAL_ENV
12:48:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:48:17 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:48:17 ++ export PATH
12:48:17 ++ '[' -n '' ']'
12:48:17 ++ '[' -z '' ']'
12:48:17 ++ _OLD_VIRTUAL_PS1=
12:48:17 ++ PS1='(.venv3) '
12:48:17 ++ export PS1
12:48:17 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:48:17 ++ export VIRTUAL_ENV_PROMPT
12:48:17 ++ hash -r
12:48:17 + pip install -U pip setuptools
12:48:18 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
12:48:18 Collecting pip
12:48:18 Using cached pip-26.1.2-py3-none-any.whl (1.8 MB)
12:48:18 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
12:48:19 Collecting setuptools
12:48:19 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB)
12:48:19 Installing collected packages: setuptools, pip
12:48:19 Attempting uninstall: setuptools
12:48:19 Found existing installation: setuptools 65.5.1
12:48:20 Uninstalling setuptools-65.5.1:
12:48:20 Successfully uninstalled setuptools-65.5.1
12:48:31 Attempting uninstall: pip
12:48:31 Found existing installation: pip 22.3.1
12:48:32 Uninstalling pip-22.3.1:
12:48:32 Successfully uninstalled pip-22.3.1
12:48:47 Successfully installed pip-26.1.2 setuptools-83.0.0
12:48:47 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:48:48 Collecting zeroc-ice==3.6.5
12:48:49 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:48:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.9 MB/s 0:00:02
12:48:51 Installing collected packages: zeroc-ice
12:48:55 Successfully installed zeroc-ice-3.6.5
12:48:55 + pip install markdown
12:48:56 Collecting markdown
12:48:56 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
12:48:56 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
12:48:56 Installing collected packages: markdown
12:48:58 Successfully installed markdown-3.10.2
12:48:58 + pip install mox3 pytest 'pytest-xdist<2'
12:48:59 Collecting mox3
12:48:59 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
12:48:59 Collecting pytest
12:48:59 Using cached pytest-9.1.1-py3-none-any.whl.metadata (7.6 kB)
12:48:59 Collecting pytest-xdist<2
12:48:59 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
12:48:59 Collecting execnet>=1.1 (from pytest-xdist<2)
12:48:59 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
12:48:59 Collecting pytest-forked (from pytest-xdist<2)
12:48:59 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
12:48:59 Collecting six (from pytest-xdist<2)
12:49:00 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
12:49:00 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
12:49:00 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
12:49:00 Collecting fixtures>=3.0.0 (from mox3)
12:49:00 Using cached fixtures-4.3.2-py3-none-any.whl.metadata (22 kB)
12:49:00 Collecting iniconfig>=1.0.1 (from pytest)
12:49:00 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
12:49:00 Collecting packaging>=22 (from pytest)
12:49:00 Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
12:49:00 Collecting pluggy<2,>=1.5 (from pytest)
12:49:00 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
12:49:00 Collecting pygments>=2.7.2 (from pytest)
12:49:00 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
12:49:00 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (83.0.0)
12:49:00 Collecting py (from pytest-forked->pytest-xdist<2)
12:49:01 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
12:49:01 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
12:49:01 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
12:49:01 Using cached pytest-9.1.1-py3-none-any.whl (386 kB)
12:49:01 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
12:49:01 Using cached execnet-2.1.2-py3-none-any.whl (40 kB)
12:49:01 Using cached fixtures-4.3.2-py3-none-any.whl (41 kB)
12:49:01 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
12:49:01 Using cached packaging-26.2-py3-none-any.whl (100 kB)
12:49:01 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB)
12:49:01 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
12:49:01 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
12:49:01 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
12:49:01 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
12:49:01 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
12:49:19
12:49:19 Successfully installed execnet-2.1.2 fixtures-4.3.2 iniconfig-2.3.0 mox3-1.1.0 packaging-26.2 pbr-7.0.3 pluggy-1.6.0 py-1.11.0 pygments-2.20.0 pytest-9.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
12:49:20 + pip install tables
12:49:21 Collecting tables
12:49:21 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
12:49:21 Collecting numpy>=1.20.0 (from tables)
12:49:21 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
12:49:21 Collecting numexpr>=2.6.2 (from tables)
12:49:21 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
12:49:21 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (26.2)
12:49:21 Collecting py-cpuinfo (from tables)
12:49:21 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
12:49:21 Collecting blosc2>=2.3.0 (from tables)
12:49:21 Using cached blosc2-4.8.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
12:49:21 Collecting ndindex (from blosc2>=2.3.0->tables)
12:49:21 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
12:49:22 Collecting msgpack (from blosc2>=2.3.0->tables)
12:49:22 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
12:49:22 Collecting pydantic (from blosc2>=2.3.0->tables)
12:49:22 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
12:49:22 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
12:49:22 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
12:49:22 Collecting rich (from blosc2>=2.3.0->tables)
12:49:22 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
12:49:22 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
12:49:22 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
12:49:22 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
12:49:22 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
12:49:22 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
12:49:22 Using cached certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
12:49:22 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
12:49:22 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
12:49:22 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
12:49:22 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
12:49:23 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
12:49:23 Using cached h2-4.3.0-py3-none-any.whl.metadata (5.1 kB)
12:49:23 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
12:49:23 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
12:49:23 Collecting hpack<5,>=4.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
12:49:23 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
12:49:23 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
12:49:23 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
12:49:23 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
12:49:23 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
12:49:23 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
12:49:23 Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
12:49:24 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
12:49:24 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
12:49:24 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
12:49:24 Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
12:49:24 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
12:49:24 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
12:49:24 Requirement already satisfied: pygments<3.0.0,>=2.13.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (2.20.0)
12:49:24 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
12:49:24 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
12:49:24 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
12:49:24 Using cached blosc2-4.8.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB)
12:49:24 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
12:49:24 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:49:25 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
12:49:25 Using cached h2-4.3.0-py3-none-any.whl (61 kB)
12:49:25 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
12:49:25 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
12:49:25 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
12:49:25 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
12:49:25 Using cached anyio-4.14.2-py3-none-any.whl (125 kB)
12:49:25 Using cached idna-3.18-py3-none-any.whl (65 kB)
12:49:25 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
12:49:25 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
12:49:25 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
12:49:25 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
12:49:25 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
12:49:25 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
12:49:25 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
12:49:25 Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB)
12:49:25 Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB)
12:49:25 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
12:49:25 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
12:49:25 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
12:49:25 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
12:49:25 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
12:50:07
12:50:07 Successfully installed annotated-types-0.7.0 anyio-4.14.2 blosc2-4.8.1 certifi-2026.6.17 h11-0.16.0 h2-4.3.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
12:50:07 + pip install jinja2
12:50:08 Collecting jinja2
12:50:08 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
12:50:08 Collecting MarkupSafe>=2.0 (from jinja2)
12:50:08 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
12:50:08 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
12:50:08 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
12:50:08 Installing collected packages: MarkupSafe, jinja2
12:50:09
12:50:09 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
12:50:09 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
12:50:19 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 10
12:50:22 Copied 2 artifacts from "OMERO-build" build number 11
12:50:23 Copied 2 artifacts from "OMERO-build-build" build number 21
12:50:23 [OMERO-training] $ /bin/bash -xe /tmp/jenkins6201505352569009942.sh
12:50:23 + source /home/settings.env
12:50:23 ++ OMERO_DB_HOST=pg
12:50:23 ++ OMERO_DB_USER=postgres
12:50:23 ++ OMERO_DB_PASS=
12:50:23 ++ OMERO_ROOT_PASS=omero
12:50:23 ++ OMERO_DATA_DIR=/OMERO
12:50:23 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:50:23 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
12:50:23 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
12:50:23 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
12:50:23 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
12:50:23 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
12:50:23 ++ ls openmicroscopy-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:23 + ZIP=openmicroscopy-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:23 + DIST=openmicroscopy-5.6.3-624-8a224c870a-ice36-b11
12:50:23 + unzip -n openmicroscopy-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:23 Archive: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:23 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.classpath-template
12:50:23 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.github/
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.github/Pull_Request_Template.md
12:50:23 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.github/workflows/
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.github/workflows/docker_build.yml
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.github/workflows/release.yml
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.github/workflows/source_build.yml
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.github/workflows/update.yaml
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.mailmap
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/.project
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/CMakeLists.txt
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/CONTRIBUTING.md
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/Dockerfile
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/LICENSE.txt
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/README.md
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/SUPPORT.md
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/build.bat
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/build.py
12:50:23 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/build.xml
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12:50:25 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_golden_lin.txt
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12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
12:50:25 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_prod_test.cc
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12:50:26 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfiles_test.py
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12:50:26 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/src/
12:50:26 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/src/README.h
12:50:26 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/src/omero/
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12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/luts/wcif/ica2.lut
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/luts/wcif/ica3.lut
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/luts/wcif/magenta_hot.lut
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/luts/wcif/orange_hot.lut
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/luts/wcif/rainbow_rgb.lut
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/luts/wcif/red_hot.lut
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/luts/wcif/yellow_hot.lut
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/omero.class
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/setup.cfg
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/README.txt
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/misc/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/misc/Makefile
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/misc/current.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/misc/enums.py
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__1/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__1/OMERO3__7.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__10/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__10/OMERO3A__9.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__11/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__11/OMERO3A__10.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__11/OMERO3A__5.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__2/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__2/OMERO3A__1.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__3/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__3/OMERO3A__2.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__3/OMERO3__5.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__4/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__4/OMERO3A__3.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__4/OMERO3__5.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__5/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__5/OMERO3A__4.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__6/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__6/OMERO3A__5.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__7/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__7/OMERO3A__6.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__8/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__8/OMERO3A__6.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__9/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__9/OMERO3A__8.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__4/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__4/OMERO3__1.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__5/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__5/OMERO3__4.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__6/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__6/OMERO3__5.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__7/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__7/OMERO3__6.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.1__0/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.1__0/OMERO4__0.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4__0/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4__0/OMERO3A__11.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
12:50:36 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
12:50:36 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
12:50:37 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
12:50:37 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
12:50:37 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__1/
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
12:50:37 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__2/
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
12:50:37 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__3/
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
12:50:37 creating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/psql-footer.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/psql-header.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/schema.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/views.sql
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/test.xml
12:50:37 inflating: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/update_dependencies.sh
12:50:37 extracting: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/antlib/resources/gitversion.xml
12:50:37 extracting: openmicroscopy-5.6.3-624-8a224c870a-ice36-b11/components/tools/OmeroCpp/cmake/GitVersion.cmake
12:50:38 + rm -f openmicroscopy-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:38 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-624-8a224c870a-ice36-b11 /home/omero/workspace/OMERO-training/openmicroscopy
12:50:38 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
12:50:38 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
12:50:38 ++ ls OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:38 + ZIP=OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:38 + DIST=OMERO.server-5.6.3-624-8a224c870a-ice36-b11
12:50:38 + unzip -n OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:38 Archive: OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/blitz/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/grid/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/profiles/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/error/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/etc/templates/grid/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/client/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/janelia/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/matplotlib/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/ncsa_paledit/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/seaborn/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/luts/wcif/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/analysis_scripts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/annotation_scripts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/export_scripts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/figure_scripts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/import_scripts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/scripts/omero/util_scripts/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/lib/server/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/misc/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__1/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__10/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__11/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__2/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__3/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__4/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__5/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__6/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__7/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__8/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__9/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__4/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__5/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__6/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__7/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.1__0/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4__0/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/
12:50:38 creating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/
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12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/jquery.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/jtidy.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/lgpl-3.0.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/lgpl-v2.0.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/lgpl-v2.1.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/lgpl-v3.0.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/lgpl.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/matplotlib.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/mit.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/mpl-v1_0.htm
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/npl-1_1.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/path.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/pil.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/postgresql.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/psf-v2.0.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/psf-v2.5.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/scons.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/slf4j.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/tablelayout.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/which.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/zlib-libpng.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/share/licenses/zpl-v2.1.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/README.txt
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/misc/Makefile
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/misc/current.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/misc/enums.py
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__1/OMERO3__7.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__10/OMERO3A__9.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__11/OMERO3A__10.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__11/OMERO3A__5.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__2/OMERO3A__1.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__3/OMERO3A__2.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__3/OMERO3__5.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__4/OMERO3A__3.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__4/OMERO3__5.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__5/OMERO3A__4.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__6/OMERO3A__5.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__7/OMERO3A__6.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__8/OMERO3A__6.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3A__9/OMERO3A__8.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__4/OMERO3__1.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__5/OMERO3__4.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__6/OMERO3__5.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO3__7/OMERO3__6.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.1__0/OMERO4__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO4__0/OMERO3A__11.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/psql-footer.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/psql-header.sql
12:50:53 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/schema.sql
12:50:54 inflating: OMERO.server-5.6.3-624-8a224c870a-ice36-b11/sql/psql/OMERO5.4__0/views.sql
12:50:54 + rm -f OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip
12:50:54 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-624-8a224c870a-ice36-b11 /home/omero/workspace/OMERO-training/OMERO.server
12:50:54 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
12:50:54 ++ deactivate nondestructive
12:50:54 ++ '[' -n '' ']'
12:50:54 ++ '[' -n '' ']'
12:50:54 ++ hash -r
12:50:54 ++ '[' -n '' ']'
12:50:54 ++ unset VIRTUAL_ENV
12:50:54 ++ unset VIRTUAL_ENV_PROMPT
12:50:54 ++ '[' '!' nondestructive = nondestructive ']'
12:50:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
12:50:54 ++ export VIRTUAL_ENV
12:50:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:50:54 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:50:54 ++ export PATH
12:50:54 ++ '[' -n '' ']'
12:50:54 ++ '[' -z '' ']'
12:50:54 ++ _OLD_VIRTUAL_PS1=
12:50:54 ++ PS1='(.venv3) '
12:50:54 ++ export PS1
12:50:54 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:50:54 ++ export VIRTUAL_ENV_PROMPT
12:50:54 ++ hash -r
12:50:54 + for x in *.gz
12:50:54 + pip install omero_dropbox-5.7.1.dev0.tar.gz
12:50:55 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
12:50:55 Installing build dependencies: started
12:50:56 Installing build dependencies: finished with status 'done'
12:50:56 Getting requirements to build wheel: started
12:50:56 Getting requirements to build wheel: finished with status 'done'
12:50:56 Preparing metadata (pyproject.toml): started
12:50:57 Preparing metadata (pyproject.toml): finished with status 'done'
12:50:57 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
12:50:57 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
12:50:57 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
12:50:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
12:50:57 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
12:50:57 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:50:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
12:50:57 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
12:50:57 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
12:50:57 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
12:50:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:50:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
12:50:58 Collecting requests (from omero-py->omero-dropbox==5.7.1.dev0)
12:50:58 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
12:50:58 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
12:50:58 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
12:50:58 Collecting charset_normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
12:50:58 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
12:50:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
12:50:58 Collecting urllib3<3,>=1.26 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
12:50:58 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
12:50:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
12:50:58 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
12:50:58 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:50:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:50:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:50:58 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:50:58 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:50:58 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
12:50:58 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
12:50:58 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
12:50:58 Building wheels for collected packages: omero-dropbox
12:50:58 Building wheel for omero-dropbox (pyproject.toml): started
12:50:59 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
12:50:59 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=fd5e7e40c32011f229bc06170e166cca60adcb880f33d797c4bb7cf9dd05c7b8
12:50:59 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
12:50:59 Successfully built omero-dropbox
12:50:59 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, future, charset_normalizer, requests, omero-py, omero-dropbox
12:51:31
12:51:32 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 charset_normalizer-3.4.9 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0
12:51:32 + for x in *.gz
12:51:32 + pip install omero_marshal-0.9.2.dev0.tar.gz
12:51:32 Processing ./omero_marshal-0.9.2.dev0.tar.gz
12:51:33 Installing build dependencies: started
12:51:34 Installing build dependencies: finished with status 'done'
12:51:34 Getting requirements to build wheel: started
12:51:34 Getting requirements to build wheel: finished with status 'done'
12:51:34 Preparing metadata (pyproject.toml): started
12:51:34 Preparing metadata (pyproject.toml): finished with status 'done'
12:51:34 Building wheels for collected packages: omero_marshal
12:51:34 Building wheel for omero_marshal (pyproject.toml): started
12:51:35 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
12:51:35 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=ffb35a9c0a608c850f66d45dce7fa0858c010ccd513a2992e85d4998a6ec8582
12:51:35 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
12:51:35 Successfully built omero_marshal
12:51:35 Installing collected packages: omero_marshal
12:51:38 Successfully installed omero_marshal-0.9.2.dev0
12:51:38 + for x in *.gz
12:51:38 + pip install omero_py-5.22.2.dev0.tar.gz
12:51:39 Processing ./omero_py-5.22.2.dev0.tar.gz
12:51:39 Installing build dependencies: started
12:51:41 Installing build dependencies: finished with status 'done'
12:51:41 Getting requirements to build wheel: started
12:51:42 Getting requirements to build wheel: finished with status 'done'
12:51:42 Preparing metadata (pyproject.toml): started
12:51:42 Preparing metadata (pyproject.toml): finished with status 'done'
12:51:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
12:51:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
12:51:42 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
12:51:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
12:51:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
12:51:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
12:51:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
12:51:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
12:51:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9)
12:51:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
12:51:42 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
12:51:42 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
12:51:42 Building wheels for collected packages: omero-py
12:51:42 Building wheel for omero-py (pyproject.toml): started
12:51:43 Building wheel for omero-py (pyproject.toml): finished with status 'done'
12:51:43 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=9c9f2e705e74aca8c50179d3a945c6b0e3d78244991064ba28e2241b8084b9cf
12:51:43 Stored in directory: /home/omero/.cache/pip/wheels/67/6d/a0/54908d8e3aee8366415fea8426f418a6717addeb1669d2e673
12:51:43 Successfully built omero-py
12:51:43 Installing collected packages: omero-py
12:51:43 Attempting uninstall: omero-py
12:51:43 Found existing installation: omero-py 5.22.1
12:51:44 Uninstalling omero-py-5.22.1:
12:51:52 Successfully uninstalled omero-py-5.22.1
12:52:11 Successfully installed omero-py-5.22.2.dev0
12:52:11 + for x in *.gz
12:52:11 + pip install omero_scripts-5.10.1.dev0.tar.gz
12:52:11 Processing ./omero_scripts-5.10.1.dev0.tar.gz
12:52:11 Installing build dependencies: started
12:52:13 Installing build dependencies: finished with status 'done'
12:52:13 Getting requirements to build wheel: started
12:52:13 Getting requirements to build wheel: finished with status 'done'
12:52:13 Preparing metadata (pyproject.toml): started
12:52:13 Preparing metadata (pyproject.toml): finished with status 'done'
12:52:13 Building wheels for collected packages: omero-scripts
12:52:13 Building wheel for omero-scripts (pyproject.toml): started
12:52:14 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
12:52:14 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=48fd98dab187bd1e82ac64f1ef53bea332171e1924710f000d2a1fd26f3216e9
12:52:14 Stored in directory: /home/omero/.cache/pip/wheels/88/2f/31/9478f1cef9d86ee7a706f3c8d94d67d22081ff846c64d43aa0
12:52:14 Successfully built omero-scripts
12:52:14 Installing collected packages: omero-scripts
12:52:15 Successfully installed omero-scripts-5.10.1.dev0
12:52:15 + for x in *.gz
12:52:15 + pip install omero_web-5.32.1.dev0.tar.gz
12:52:16 Processing ./omero_web-5.32.1.dev0.tar.gz
12:52:16 Installing build dependencies: started
12:52:17 Installing build dependencies: finished with status 'done'
12:52:17 Getting requirements to build wheel: started
12:52:18 Getting requirements to build wheel: finished with status 'done'
12:52:18 Preparing metadata (pyproject.toml): started
12:52:18 Preparing metadata (pyproject.toml): finished with status 'done'
12:52:18 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
12:52:18 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
12:52:18 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
12:52:18 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
12:52:18 Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB)
12:52:19 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
12:52:19 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
12:52:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
12:52:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
12:52:19 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
12:52:19 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
12:52:19 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
12:52:19 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
12:52:19 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
12:52:19 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
12:52:19 Collecting pytz (from omero-web==5.32.1.dev0)
12:52:19 Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
12:52:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
12:52:19 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
12:52:19 Collecting importlib-resources (from omero-web==5.32.1.dev0)
12:52:19 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
12:52:19 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
12:52:19 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
12:52:19 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
12:52:19 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
12:52:19 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (83.0.0)
12:52:19 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
12:52:19 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
12:52:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
12:52:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
12:52:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
12:52:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
12:52:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
12:52:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
12:52:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
12:52:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
12:52:19 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
12:52:19 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
12:52:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
12:52:19 Using cached django-5.2.16-py3-none-any.whl (8.3 MB)
12:52:19 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
12:52:19 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
12:52:19 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
12:52:19 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
12:52:19 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
12:52:19 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
12:52:20 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
12:52:20 Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB)
12:52:20 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
12:52:20 Building wheels for collected packages: omero-web
12:52:20 Building wheel for omero-web (pyproject.toml): started
12:52:21 Building wheel for omero-web (pyproject.toml): finished with status 'done'
12:52:21 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=8df9824485a6b68f542ddc2f84b74f3558a841eb072cc3995b2ae86ee028c251
12:52:21 Stored in directory: /home/omero/.cache/pip/wheels/91/ad/79/ec318377d2e814ec25bf29bc612d81f9a885cbc4aa52a338d5
12:52:21 Successfully built omero-web
12:52:21 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
12:53:38
12:53:38 Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
12:53:38 + cd /home/omero/workspace/OMERO-training/OMERO.server
12:53:38 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
12:53:38 + HOSTNAME=1640262b39d3
12:53:38 + PORT=4064
12:53:38 + WEBHOST=http://nginx/web
12:53:38 + SERVER_NAME=omero
12:53:38 + ROOT_PASSWORD=omero
12:53:38 + GROUP_NAME=training_group
12:53:38 + GROUP_NAME_2=training_group-2
12:53:38 + USER_NAME=training_user
12:53:38 + USER_NAME_2=training_user-2
12:53:38 + LIGHTADMIN_USER_NAME=ladmin_user
12:53:38 + USER_PASSWORD=ome
12:53:38 + CONFIG_FILENAME=training_ice.config
12:53:38 + omero login root@1640262b39d3:4064 -w omero
12:53:41 Created session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:41 + omero group add training_group --type read-only --ignore-existing
12:53:43 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:43 Group exists: training_group (id=3)
12:53:43 + omero group add training_group-2 --type read-only --ignore-existing
12:53:45 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:45 Group exists: training_group-2 (id=4)
12:53:45 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
12:53:46 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:46 User exists: training_user (id=2)
12:53:47 + omero user joingroup --name training_user --group-name training_group training_group-2
12:53:48 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:48 2 is already in group 3
12:53:48 2 is already in group 4
12:53:48 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
12:53:50 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:50 User exists: training_user-2 (id=3)
12:53:50 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
12:53:52 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:52 3 is already in group 3
12:53:52 3 is already in group 4
12:53:52 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
12:53:54 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:54 User exists: ladmin_user (id=4)
12:53:54 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
12:53:56 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:56 4 is already in group 3
12:53:56 4 is already in group 4
12:53:56 ++ omero user info ladmin_user --style plain
12:53:56 ++ cut -d, -f1
12:53:58 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:53:58 + id=4
12:53:58 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
12:54:00 Using session for root@1640262b39d3:4064. Idle timeout: 10 min. Current group: system
12:54:00 Experimenter:4
12:54:01 + omero logout
12:54:03 + touch test.fake
12:54:03 + omero login training_user@1640262b39d3:4064 -w ome -g training_group
12:54:05 Created session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:05 + nProjects=1
12:54:05 + nDatasets=2
12:54:05 + echo 'Creating projects and datasets'
12:54:05 Creating projects and datasets
12:54:05 + (( i=1 ))
12:54:05 + (( i<=1 ))
12:54:05 ++ omero obj new Project 'name=Project 1'
12:54:07 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:07 + project=Project:251
12:54:07 + (( j=1 ))
12:54:07 + (( j<=2 ))
12:54:07 ++ omero obj new Dataset 'name=Dataset 1-1'
12:54:09 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:10 + dataset=Dataset:251
12:54:10 + omero obj new ProjectDatasetLink parent=Project:251 child=Dataset:251
12:54:12 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:12 ProjectDatasetLink:251
12:54:12 + echo 'Importing image into dataset'
12:54:12 Importing image into dataset
12:54:12 + omero import -d Dataset:251 test.fake --debug ERROR
12:54:16 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:17 2026-07-16 12:54:17,286 394 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
12:54:17 2026-07-16 12:54:17,308 416 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
12:54:26 Image:251
12:54:26 Other imported objects:
12:54:26 Fileset:251
12:54:26
12:54:26 ==> Summary
12:54:26 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:06.471
12:54:26 + (( j++ ))
12:54:26 + (( j<=2 ))
12:54:26 ++ omero obj new Dataset 'name=Dataset 1-2'
12:54:28 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:29 + dataset=Dataset:252
12:54:29 + omero obj new ProjectDatasetLink parent=Project:251 child=Dataset:252
12:54:31 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:31 ProjectDatasetLink:252
12:54:31 + echo 'Importing image into dataset'
12:54:31 Importing image into dataset
12:54:31 + omero import -d Dataset:252 test.fake --debug ERROR
12:54:33 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:33 2026-07-16 12:54:33,786 226 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
12:54:33 2026-07-16 12:54:33,800 240 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
12:54:36 Image:252
12:54:36 Other imported objects:
12:54:36 Fileset:252
12:54:36
12:54:36 ==> Summary
12:54:36 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.755
12:54:37 + (( j++ ))
12:54:37 + (( j<=2 ))
12:54:37 + (( i++ ))
12:54:37 + (( i<=1 ))
12:54:37 + (( j=1 ))
12:54:37 + (( j<=2 ))
12:54:37 + omero obj new Dataset 'name=Orphaned dataset 1'
12:54:39 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:39 Dataset:253
12:54:39 + (( j++ ))
12:54:39 + (( j<=2 ))
12:54:39 + omero obj new Dataset 'name=Orphaned dataset 2'
12:54:41 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:41 Dataset:254
12:54:41 + (( j++ ))
12:54:41 + (( j<=2 ))
12:54:41 + echo 'Importing image file'
12:54:41 Importing image file
12:54:41 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
12:54:41 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
12:54:48 ++ sed -n -e 's/^Image://p' image_import.log
12:54:48 + imageid=253
12:54:48 ++ omero obj new MapAnnotation
12:54:51 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:51 + MAP=MapAnnotation:251
12:54:51 + omero obj map-set MapAnnotation:251 mapValue testkey testvalue
12:54:53 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:55 MapAnnotation:251
12:54:55 + omero obj new ImageAnnotationLink parent=Image:253 child=MapAnnotation:251
12:54:57 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:54:57 ImageAnnotationLink:251
12:54:57 ++ omero obj new Screen name=Screen
12:55:00 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:00 + screen=Screen:251
12:55:00 ++ omero obj new Plate name=Plate
12:55:02 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:03 + plate=Plate:251
12:55:03 + omero obj new ScreenPlateLink parent=Screen:251 child=Plate:251
12:55:05 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:05 ScreenPlateLink:251
12:55:05 + echo 'Importing SPW file'
12:55:05 Importing SPW file
12:55:05 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
12:55:05 + omero import -r Screen:251 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
12:55:15 ++ sed -n -e 's/^Plate://p' plate_import.log
12:55:16 + plateid=252
12:55:16 + omero logout
12:55:19 + omero login training_user-2@1640262b39d3:4064 -w ome -g training_group
12:55:22 Created session for training_user-2@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:22 + omero obj new Project 'name=Project 0'
12:55:25 Using session for training_user-2@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:25 Project:252
12:55:25 + omero obj new Dataset 'name=Dataset 0'
12:55:27 Using session for training_user-2@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:27 Dataset:255
12:55:28 + omero import test.fake --debug ERROR
12:55:30 Using session for training_user-2@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:30 2026-07-16 12:55:30,953 230 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
12:55:30 2026-07-16 12:55:30,967 244 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
12:55:33 Image:257
12:55:33 Other imported objects:
12:55:33 Fileset:255
12:55:33
12:55:33 ==> Summary
12:55:33 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.433
12:55:34 + omero obj new Screen name=Screen
12:55:36 Using session for training_user-2@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:36 Screen:252
12:55:36 + omero obj new Plate name=Plate
12:55:38 Using session for training_user-2@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group
12:55:38 Plate:253
12:55:38 + omero login training_user@1640262b39d3:4064 -w ome -g training_group-2
12:55:40 Created session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group-2
12:55:40 + omero obj new Project 'name=Project 0'
12:55:42 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group-2
12:55:42 Project:253
12:55:42 + omero obj new Dataset 'name=Dataset 0'
12:55:44 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group-2
12:55:44 Dataset:256
12:55:44 + omero import test.fake --debug ERROR
12:55:46 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group-2
12:55:47 2026-07-16 12:55:47,215 216 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.6-SNAPSHOT
12:55:47 2026-07-16 12:55:47,228 229 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.5.0 revision: 877c317e4e396381dc76e56c1539b24947f71dce date: 18 March 2026
12:55:49 Image:258
12:55:49 Other imported objects:
12:55:49 Fileset:256
12:55:49
12:55:49 ==> Summary
12:55:49 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.416
12:55:50 + omero obj new Screen name=Screen
12:55:52 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group-2
12:55:52 Screen:253
12:55:52 + omero obj new Plate name=Plate
12:55:54 Using session for training_user@1640262b39d3:4064. Idle timeout: 10 min. Current group: training_group-2
12:55:54 Plate:254
12:55:54 + omero logout
12:55:56 + echo omero.host=1640262b39d3
12:55:56 + echo omero.port=4064
12:55:56 + echo omero.webhost=http://nginx/web
12:55:56 + echo omero.servername=omero
12:55:56 + echo omero.user=training_user
12:55:56 + echo omero.pass=ome
12:55:56 + echo omero.group=training_group
12:55:56 + echo omero.projectid=251
12:55:56 + echo omero.datasetid=252
12:55:56 + echo omero.imageid=253
12:55:56 + echo omero.plateid=252
12:55:56 + echo omero.screenid=251
12:55:56 + echo omero.group2=training_group-2
12:55:56 + echo omero.ladmin=ladmin_user
12:55:56 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
12:55:56 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
12:55:56 + omero sessions clear
12:55:58 1 session(s) cleared
12:55:58 !! 07/16/26 12:55:58.624 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
12:55:58 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
12:55:58 + pip install --upgrade requests
12:55:59 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.34.2)
12:55:59 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.9)
12:55:59 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.18)
12:55:59 Requirement already satisfied: urllib3<3,>=1.26 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.7.0)
12:55:59 Requirement already satisfied: certifi>=2023.5.7 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.6.17)
12:56:00 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
12:56:10 Running training suite
12:56:10 created 20 shapes
12:56:10 retrieved 20 shapes in 4 batches
12:56:10 Current user:
12:56:10 ID: 2
12:56:10 Username: training_user
12:56:10 Full Name: training_user training_user
12:56:10 Is Admin: False
12:56:10 []
12:56:10 Member of:
12:56:10 ID: 3 Name: training_group
12:56:10 ID: 4 Name: training_group-2
12:56:10 Current group: training_group
12:56:10 Group owners:
12:56:10 Group members:
12:56:10 ID: 2 UserName: training_user Name: training_user training_user
12:56:10 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
12:56:10 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
12:56:10 Owner of:
12:56:10 Admins:
12:56:10 ID: 52 UserName: <hidden> Name: <hidden> <hidden>
12:56:10 ID: 0 UserName: root Name: root root
12:56:10 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
12:56:10 Created new Image:259 Name:"numpy image"
12:56:10 newPlane for z,t: 0 0 uint8 0 127
12:56:10 newPlane for z,t: 0 1 uint8 0 127
12:56:10 newPlane for z,t: 0 2 uint8 0 127
12:56:10 newPlane for z,t: 0 3 uint8 0 127
12:56:10 newPlane for z,t: 0 4 uint8 0 127
12:56:10 newPlane for z,t: 0 5 uint8 0 127
12:56:10 newPlane for z,t: 0 6 uint8 0 127
12:56:10 newPlane for z,t: 0 7 uint8 0 127
12:56:10 newPlane for z,t: 0 8 uint8 0 127
12:56:10 newPlane for z,t: 0 9 uint8 0 127
12:56:10 newPlane for z,t: 1 0 uint8 0 127
12:56:10 newPlane for z,t: 1 1 uint8 0 127
12:56:10 newPlane for z,t: 1 2 uint8 0 127
12:56:10 newPlane for z,t: 1 3 uint8 0 127
12:56:10 newPlane for z,t: 1 4 uint8 0 127
12:56:10 newPlane for z,t: 1 5 uint8 0 127
12:56:10 newPlane for z,t: 1 6 uint8 0 127
12:56:10 newPlane for z,t: 1 7 uint8 0 127
12:56:10 newPlane for z,t: 1 8 uint8 0 127
12:56:10 newPlane for z,t: 1 9 uint8 0 127
12:56:10 newPlane for z,t: 2 0 uint8 0 127
12:56:10 newPlane for z,t: 2 1 uint8 0 127
12:56:10 newPlane for z,t: 2 2 uint8 0 127
12:56:10 newPlane for z,t: 2 3 uint8 0 127
12:56:10 newPlane for z,t: 2 4 uint8 0 127
12:56:10 newPlane for z,t: 2 5 uint8 0 127
12:56:10 newPlane for z,t: 2 6 uint8 0 127
12:56:10 newPlane for z,t: 2 7 uint8 0 127
12:56:10 newPlane for z,t: 2 8 uint8 0 127
12:56:10 newPlane for z,t: 2 9 uint8 0 127
12:56:10 newPlane for z,t: 3 0 uint8 0 127
12:56:10 newPlane for z,t: 3 1 uint8 0 127
12:56:10 newPlane for z,t: 3 2 uint8 0 127
12:56:10 newPlane for z,t: 3 3 uint8 0 127
12:56:10 newPlane for z,t: 3 4 uint8 0 127
12:56:10 newPlane for z,t: 3 5 uint8 0 127
12:56:10 newPlane for z,t: 3 6 uint8 0 127
12:56:10 newPlane for z,t: 3 7 uint8 0 127
12:56:10 newPlane for z,t: 3 8 uint8 0 127
12:56:10 newPlane for z,t: 3 9 uint8 0 127
12:56:10 newPlane for z,t: 4 0 uint8 0 127
12:56:10 newPlane for z,t: 4 1 uint8 0 127
12:56:10 newPlane for z,t: 4 2 uint8 0 127
12:56:10 newPlane for z,t: 4 3 uint8 0 127
12:56:10 newPlane for z,t: 4 4 uint8 0 127
12:56:10 newPlane for z,t: 4 5 uint8 0 127
12:56:10 newPlane for z,t: 4 6 uint8 0 127
12:56:10 newPlane for z,t: 4 7 uint8 0 127
12:56:10 newPlane for z,t: 4 8 uint8 0 127
12:56:10 newPlane for z,t: 4 9 uint8 0 127
12:56:10 Deleting, please wait.
12:56:10 Error? False
12:56:10 253 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:56:10 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2026-07/16/12-54-46.126/ test&sizeT=10&sizeZ=5&sizeC=3.fake
12:56:10 1
12:56:10 training_user_2/Blitz-0-Ice.ThreadPool.Server-11/2026-07/16/12-54-46.126/ test&sizeT=10&sizeZ=5&sizeC=3.fake
12:56:10 Current group: training_group
12:56:10 Permissions: READ-ONLY (rwr---)
12:56:10 Project 0 Owner: training_user-2 training_user-2
12:56:10 Project 0 Owner: training_user-2 training_user-2
12:56:10 Project 0 Owner: training_user-2 training_user-2
12:56:10 Project 0 Owner: training_user-2 training_user-2
12:56:10 Project 0 Owner: training_user-2 training_user-2
12:56:10 Project 0 Owner: training_user-2 training_user-2
12:56:10 Project 1 Owner: training_user training_user
12:56:10 Project 1 Owner: training_user training_user
12:56:10 Project 1 Owner: training_user training_user
12:56:10 Project 1 Owner: training_user training_user
12:56:10 Project 1 Owner: training_user training_user
12:56:10 Project 1 Owner: training_user training_user
12:56:10 Image: <_ImageWrapper id=253>
12:56:10 Image: <_ImageWrapper id=253> Group: training_group 3
12:56:10 Image: <_ImageWrapper id=253> Channel: 0
12:56:10 Channel: 1
12:56:10 Channel: 2
12:56:10
12:56:10
12:56:10 original_metadata
12:56:10 global_metadata
12:56:10 series_metadata
12:56:10
12:56:10 Plane at zct: 0 0 0
12:56:10 [[ 0 0 0 ... 253 254 255]
12:56:10 [ 0 0 0 ... 253 254 255]
12:56:10 [ 0 0 0 ... 253 254 255]
12:56:10 ...
12:56:10 [ 0 1 2 ... 253 254 255]
12:56:10 [ 0 1 2 ... 253 254 255]
12:56:10 [ 0 1 2 ... 253 254 255]]
12:56:10 shape: (512, 512)
12:56:10 min: 0 max: 255 pixel type: uint8
12:56:10
12:56:10 Z stack of tiles:
12:56:10 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:56:10 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:56:10 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:56:10 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:56:10 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
12:56:10
12:56:10 Hyper stack of planes:
12:56:10 plane zct: (2, 0, 0) min: 0 max: 255
12:56:10 plane zct: (2, 0, 1) min: 0 max: 255
12:56:10 plane zct: (2, 0, 2) min: 0 max: 255
12:56:10 plane zct: (2, 0, 3) min: 0 max: 255
12:56:10 plane zct: (2, 0, 4) min: 0 max: 255
12:56:10 plane zct: (2, 0, 5) min: 0 max: 255
12:56:10 plane zct: (2, 0, 6) min: 0 max: 255
12:56:10 plane zct: (2, 0, 7) min: 0 max: 255
12:56:10 plane zct: (2, 0, 8) min: 0 max: 255
12:56:10 plane zct: (2, 0, 9) min: 0 max: 255
12:56:10 plane zct: (2, 1, 0) min: 0 max: 255
12:56:10 plane zct: (2, 1, 1) min: 0 max: 255
12:56:10 plane zct: (2, 1, 2) min: 0 max: 255
12:56:10 plane zct: (2, 1, 3) min: 0 max: 255
12:56:10 plane zct: (2, 1, 4) min: 0 max: 255
12:56:10 plane zct: (2, 1, 5) min: 0 max: 255
12:56:10 plane zct: (2, 1, 6) min: 0 max: 255
12:56:10 plane zct: (2, 1, 7) min: 0 max: 255
12:56:10 plane zct: (2, 1, 8) min: 0 max: 255
12:56:10 plane zct: (2, 1, 9) min: 0 max: 255
12:56:10 plane zct: (2, 2, 0) min: 0 max: 255
12:56:10 plane zct: (2, 2, 1) min: 0 max: 255
12:56:10 plane zct: (2, 2, 2) min: 0 max: 255
12:56:10 plane zct: (2, 2, 3) min: 0 max: 255
12:56:10 plane zct: (2, 2, 4) min: 0 max: 255
12:56:10 plane zct: (2, 2, 5) min: 0 max: 255
12:56:10 plane zct: (2, 2, 6) min: 0 max: 255
12:56:10 plane zct: (2, 2, 7) min: 0 max: 255
12:56:10 plane zct: (2, 2, 8) min: 0 max: 255
12:56:10 plane zct: (2, 2, 9) min: 0 max: 255
12:56:10 plane zct: (3, 0, 0) min: 0 max: 255
12:56:10 plane zct: (3, 0, 1) min: 0 max: 255
12:56:10 plane zct: (3, 0, 2) min: 0 max: 255
12:56:10 plane zct: (3, 0, 3) min: 0 max: 255
12:56:10 plane zct: (3, 0, 4) min: 0 max: 255
12:56:10 plane zct: (3, 0, 5) min: 0 max: 255
12:56:10 plane zct: (3, 0, 6) min: 0 max: 255
12:56:10 plane zct: (3, 0, 7) min: 0 max: 255
12:56:10 plane zct: (3, 0, 8) min: 0 max: 255
12:56:10 plane zct: (3, 0, 9) min: 0 max: 255
12:56:10 plane zct: (3, 1, 0) min: 0 max: 255
12:56:10 plane zct: (3, 1, 1) min: 0 max: 255
12:56:10 plane zct: (3, 1, 2) min: 0 max: 255
12:56:10 plane zct: (3, 1, 3) min: 0 max: 255
12:56:10 plane zct: (3, 1, 4) min: 0 max: 255
12:56:10 plane zct: (3, 1, 5) min: 0 max: 255
12:56:10 plane zct: (3, 1, 6) min: 0 max: 255
12:56:10 plane zct: (3, 1, 7) min: 0 max: 255
12:56:10 plane zct: (3, 1, 8) min: 0 max: 255
12:56:10 plane zct: (3, 1, 9) min: 0 max: 255
12:56:10 plane zct: (3, 2, 0) min: 0 max: 255
12:56:10 plane zct: (3, 2, 1) min: 0 max: 255
12:56:10 plane zct: (3, 2, 2) min: 0 max: 255
12:56:10 plane zct: (3, 2, 3) min: 0 max: 255
12:56:10 plane zct: (3, 2, 4) min: 0 max: 255
12:56:10 plane zct: (3, 2, 5) min: 0 max: 255
12:56:10 plane zct: (3, 2, 6) min: 0 max: 255
12:56:10 plane zct: (3, 2, 7) min: 0 max: 255
12:56:10 plane zct: (3, 2, 8) min: 0 max: 255
12:56:10 plane zct: (3, 2, 9) min: 0 max: 255
12:56:10 plane zct: (4, 0, 0) min: 0 max: 255
12:56:10 plane zct: (4, 0, 1) min: 0 max: 255
12:56:10 plane zct: (4, 0, 2) min: 0 max: 255
12:56:10 plane zct: (4, 0, 3) min: 0 max: 255
12:56:10 plane zct: (4, 0, 4) min: 0 max: 255
12:56:10 plane zct: (4, 0, 5) min: 0 max: 255
12:56:10 plane zct: (4, 0, 6) min: 0 max: 255
12:56:10 plane zct: (4, 0, 7) min: 0 max: 255
12:56:10 plane zct: (4, 0, 8) min: 0 max: 255
12:56:10 plane zct: (4, 0, 9) min: 0 max: 255
12:56:10 plane zct: (4, 1, 0) min: 0 max: 255
12:56:10 plane zct: (4, 1, 1) min: 0 max: 255
12:56:10 plane zct: (4, 1, 2) min: 0 max: 255
12:56:10 plane zct: (4, 1, 3) min: 0 max: 255
12:56:10 plane zct: (4, 1, 4) min: 0 max: 255
12:56:10 plane zct: (4, 1, 5) min: 0 max: 255
12:56:10 plane zct: (4, 1, 6) min: 0 max: 255
12:56:10 plane zct: (4, 1, 7) min: 0 max: 255
12:56:10 plane zct: (4, 1, 8) min: 0 max: 255
12:56:10 plane zct: (4, 1, 9) min: 0 max: 255
12:56:10 plane zct: (4, 2, 0) min: 0 max: 255
12:56:10 plane zct: (4, 2, 1) min: 0 max: 255
12:56:10 plane zct: (4, 2, 2) min: 0 max: 255
12:56:10 plane zct: (4, 2, 3) min: 0 max: 255
12:56:10 plane zct: (4, 2, 4) min: 0 max: 255
12:56:10 plane zct: (4, 2, 5) min: 0 max: 255
12:56:10 plane zct: (4, 2, 6) min: 0 max: 255
12:56:10 plane zct: (4, 2, 7) min: 0 max: 255
12:56:10 plane zct: (4, 2, 8) min: 0 max: 255
12:56:10 plane zct: (4, 2, 9) min: 0 max: 255
12:56:10 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
12:56:11
12:56:11 List Projects:
12:56:11 ==================================================
12:56:11 Project:1 Name:"Project 1" (owner=training_user)
12:56:11 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
12:56:11 Image:1 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
12:56:11 Image:12 Name:"New Image" (owner=training_user)
12:56:11 Image:13 Name:"newImageFrom3" (owner=training_user)
12:56:11 Image:2 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:7 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:17 Name:"new Name 1" (owner=training_user)
12:56:11 Dataset:18 Name:"new Name 2" (owner=training_user)
12:56:11 Project:51 Name:"Project 1" (owner=training_user)
12:56:11 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
12:56:11 Image:51 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
12:56:11 Image:62 Name:"New Image" (owner=training_user)
12:56:11 Image:63 Name:"newImageFrom53" (owner=training_user)
12:56:11 Image:52 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:57 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:67 Name:"new Name 1" (owner=training_user)
12:56:11 Dataset:68 Name:"new Name 2" (owner=training_user)
12:56:11 Project:101 Name:"Project 1" (owner=training_user)
12:56:11 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
12:56:11 Image:101 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
12:56:11 Image:112 Name:"New Image" (owner=training_user)
12:56:11 Image:113 Name:"newImageFrom103" (owner=training_user)
12:56:11 Image:102 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:107 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:117 Name:"new Name 1" (owner=training_user)
12:56:11 Dataset:118 Name:"new Name 2" (owner=training_user)
12:56:11 Project:151 Name:"Project 1" (owner=training_user)
12:56:11 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
12:56:11 Image:151 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
12:56:11 Image:162 Name:"New Image" (owner=training_user)
12:56:11 Image:163 Name:"newImageFrom153" (owner=training_user)
12:56:11 Image:152 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:157 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:167 Name:"new Name 1" (owner=training_user)
12:56:11 Dataset:168 Name:"new Name 2" (owner=training_user)
12:56:11 Project:201 Name:"Project 1" (owner=training_user)
12:56:11 Dataset:201 Name:"Dataset 1-1" (owner=training_user)
12:56:11 Image:201 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:202 Name:"Dataset 1-2" (owner=training_user)
12:56:11 Image:212 Name:"New Image" (owner=training_user)
12:56:11 Image:213 Name:"newImageFrom203" (owner=training_user)
12:56:11 Image:202 Name:"test.fake" (owner=training_user)
12:56:11 Dataset:207 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:217 Name:"new Name 1" (owner=training_user)
12:56:11 Dataset:218 Name:"new Name 2" (owner=training_user)
12:56:11
12:56:11 List orphaned Datasets:
12:56:11 ==================================================
12:56:11 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
12:56:11 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
12:56:11 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
12:56:11 Dataset:8 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:9 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:10 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:11 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:12 Name:"New Dataset2" (owner=training_user)
12:56:11 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
12:56:11 Dataset:14 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:15 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:16 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
12:56:11 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
12:56:11 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
12:56:11 Dataset:58 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:59 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:60 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:61 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:62 Name:"New Dataset2" (owner=training_user)
12:56:11 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
12:56:11 Dataset:64 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:65 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:66 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
12:56:11 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
12:56:11 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
12:56:11 Dataset:108 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:109 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:110 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:111 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:112 Name:"New Dataset2" (owner=training_user)
12:56:11 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
12:56:11 Dataset:114 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:115 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:116 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
12:56:11 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
12:56:11 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
12:56:11 Dataset:158 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:159 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:160 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:161 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:162 Name:"New Dataset2" (owner=training_user)
12:56:11 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
12:56:11 Dataset:164 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:165 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:166 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user)
12:56:11 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user)
12:56:11 Dataset:205 Name:"Dataset 0" (owner=training_user-2)
12:56:11 Dataset:208 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:209 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:210 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:211 Name:"New Dataset" (owner=training_user)
12:56:11 Dataset:212 Name:"New Dataset2" (owner=training_user)
12:56:11 Dataset:213 Name:"FileAnnotationDelete" (owner=training_user)
12:56:11 Dataset:214 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:215 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:216 Name:"MyDataset" (owner=training_user)
12:56:11 Dataset:253 Name:"Orphaned dataset 1" (owner=training_user)
12:56:11 Dataset:254 Name:"Orphaned dataset 2" (owner=training_user)
12:56:11 Dataset:255 Name:"Dataset 0" (owner=training_user-2)
12:56:11
12:56:11 Images in Dataset: 252
12:56:11 ==================================================
12:56:11 Image:252 Name:"test.fake" (owner=training_user)
12:56:11
12:56:11 Image:253
12:56:11 ==================================================
12:56:11 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:56:11 X: 512
12:56:11 Y: 512
12:56:11 Z: 5
12:56:11 C: 3
12:56:11 T: 10
12:56:11 Channel: 0 Color: (255, 0, 0)
12:56:11 Lookup table: None
12:56:11 Is reverse intensity? False
12:56:11 Channel: 1 Color: (0, 255, 0)
12:56:11 Lookup table: None
12:56:11 Is reverse intensity? False
12:56:11 Channel: 2 Color: (0, 0, 255)
12:56:11 Lookup table: None
12:56:11 Is reverse intensity? False
12:56:11 Pixel Size X: None
12:56:11
12:56:11 List Screens:
12:56:11 ==================================================
12:56:11 Screen:1 Name:"Screen" (owner=training_user)
12:56:11 Plate:1 Name:"Plate" (owner=training_user)
12:56:11 Plate:2 Name:"Plate Name 0" (owner=training_user)
12:56:11 Screen:51 Name:"Screen" (owner=training_user)
12:56:11 Plate:51 Name:"Plate" (owner=training_user)
12:56:11 Plate:52 Name:"Plate Name 0" (owner=training_user)
12:56:11 Screen:101 Name:"Screen" (owner=training_user)
12:56:11 Plate:101 Name:"Plate" (owner=training_user)
12:56:11 Plate:102 Name:"Plate Name 0" (owner=training_user)
12:56:11 Screen:151 Name:"Screen" (owner=training_user)
12:56:11 Plate:151 Name:"Plate" (owner=training_user)
12:56:11 Plate:152 Name:"Plate Name 0" (owner=training_user)
12:56:11 Screen:201 Name:"Screen" (owner=training_user)
12:56:11 Plate:201 Name:"Plate" (owner=training_user)
12:56:11 Plate:202 Name:"Plate Name 0" (owner=training_user)
12:56:11 Screen:251 Name:"Screen" (owner=training_user)
12:56:11 Plate:251 Name:"Plate" (owner=training_user)
12:56:11 Plate:252 Name:"Plate Name 0" (owner=training_user)
12:56:11 Screen:2 Name:"Screen" (owner=training_user-2)
12:56:11 Screen:52 Name:"Screen" (owner=training_user-2)
12:56:11 Screen:102 Name:"Screen" (owner=training_user-2)
12:56:11 Screen:152 Name:"Screen" (owner=training_user-2)
12:56:11 Screen:202 Name:"Screen" (owner=training_user-2)
12:56:11 Screen:252 Name:"Screen" (owner=training_user-2)
12:56:11
12:56:11 Plate:252
12:56:11 ==================================================
12:56:11
12:56:11 Number of fields: (0, 0)
12:56:11
12:56:11 Grid size: {'rows': 1, 'columns': 3}
12:56:18
12:56:18 Wells in Plate: Plate Name 0
12:56:18 Well: 0 0 Fields: 1
12:56:18 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 254
12:56:18 Well: 0 1 Fields: 1
12:56:18 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 255
12:56:18 Well: 0 2 Fields: 1
12:56:18 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 256
12:56:18 251 <class 'omero.model.MapAnnotationI'>
12:56:18 added by training_user
12:56:18 Image ID: 253
12:56:18 Annotation ID: 251
12:56:18 253
12:56:18 Channel rendering settings:
12:56:18 Name: 0
12:56:18 Color: FF0000
12:56:18 Active: True
12:56:18 Levels: 0.0 - 255.0
12:56:18 Name: 1
12:56:18 Color: 00FF00
12:56:18 Active: True
12:56:18 Levels: 0.0 - 255.0
12:56:18 Name: 2
12:56:18 Color: 0000FF
12:56:18 Active: True
12:56:18 Levels: 0.0 - 255.0
12:56:18 isGreyscaleRenderingModel: False
12:56:18 Default Z/T positions:
12:56:18 Z = 2, T = 0
12:56:18 Rendering Defs on Image:
12:56:18 ID: 253 (owner: training_user training_user)
12:56:18 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
12:56:18 ROI: ID: 252
12:56:18 Shape: id 271 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
12:56:18 Shape: id 272 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
12:56:18 ROI: ID: 253
12:56:18 Shape: id 273 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
12:56:18 ROI: ID: 254
12:56:18 Shape: id 274 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
12:56:18 ROI: ID: 255
12:56:18 Shape: id 275 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
12:56:18 ROI: ID: 256
12:56:18 <class 'omero.model.PolygonI'> Not supported by this code
12:56:18 Shape: id 276 theT 0 theZ 2 textValue test-Polygon
12:56:18 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
12:56:18 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
12:56:18 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
12:56:18 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
12:56:18 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
12:56:18 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
12:56:18 Removing Shape from ROI...
12:56:18 Deleting ROI: 257
12:56:18 Table Columns:
12:56:18 Uid
12:56:18 MyStringColumnInit
12:56:18 Row count: 10
12:56:18
12:56:18 Get All Data for rows: [3, 5, 7]
12:56:18 Data for Column: Uid
12:56:18 1
12:56:18 2
12:56:18 3
12:56:18 4
12:56:18 5
12:56:18 6
12:56:18 7
12:56:18 8
12:56:18 9
12:56:18 10
12:56:18 Data for Column: MyStringColumnInit
12:56:18 one
12:56:18 two
12:56:18 three
12:56:18 four
12:56:18 five
12:56:18 six
12:56:18 seven
12:56:18 eight
12:56:18 nine
12:56:18 ten
12:56:18
12:56:18 Get All Data for rows with slice: [3, 5, 7]
12:56:18 Data for Column: Uid
12:56:18 4
12:56:18 6
12:56:18 8
12:56:18 Data for Column: MyStringColumnInit
12:56:18 four
12:56:18 six
12:56:18 eight
12:56:18
12:56:18 Get Data for cols: [1] and between rows: 3 - 7
12:56:18 Data for Column: MyStringColumnInit
12:56:18 four
12:56:18 five
12:56:18 six
12:56:18 seven
12:56:18
12:56:18 Get Data for cols: [1] and between rows: 3 - 7 with slice
12:56:18 Data for Column: MyStringColumnInit
12:56:18 four
12:56:18 five
12:56:18 six
12:56:18 seven
12:56:18 Query Results for Column: Uid
12:56:18 3
12:56:18 4
12:56:18 5
12:56:18 6
12:56:18 7
12:56:18 8
12:56:18 Query Results for Column: MyStringColumnInit
12:56:18 three
12:56:18 four
12:56:18 five
12:56:18 six
12:56:18 seven
12:56:18 eight
12:56:18 Opened table with row-count: 10
12:56:18 New dataset, Id: 257
12:56:18 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
12:56:18 255 <class 'omero.model.TagAnnotationI'> added by training_user
12:56:18 Tag value: New Tag
12:56:18 256 <class 'omero.model.MapAnnotationI'> added by training_user
12:56:18
12:56:18 Creating an OriginalFile and FileAnnotation
12:56:18 Attaching FileAnnotation to Dataset: File ID: 257 , README.txt Size: 15
12:56:18
12:56:18 Annotations on Dataset: New Dataset
12:56:18 File ID: 701 README.txt Size: 15
12:56:18
12:56:18 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
12:56:18 File downloaded!
12:56:18 107 README.txt
12:56:18 157 README.txt
12:56:18 207 README.txt
12:56:18 257 README.txt
12:56:18 7 README.txt
12:56:18 57 README.txt
12:56:18 Found Annotation with namespace: imperial.training.demo
12:56:18 Plane: 0 0 0
12:56:18 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
12:56:18 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
12:56:18
12:56:18 List Datasets:
12:56:18 ID: 8 Name: MyDataset
12:56:18 ID: 9 Name: MyDataset
12:56:18 ID: 10 Name: MyDataset
12:56:18 ID: 14 Name: MyDataset
12:56:18 ID: 15 Name: MyDataset
12:56:18 ID: 16 Name: MyDataset
12:56:18 ID: 60 Name: MyDataset
12:56:18 ID: 58 Name: MyDataset
12:56:18 ID: 59 Name: MyDataset
12:56:18 ID: 64 Name: MyDataset
12:56:18 ID: 65 Name: MyDataset
12:56:18 ID: 66 Name: MyDataset
12:56:18 ID: 110 Name: MyDataset
12:56:18 ID: 108 Name: MyDataset
12:56:18 ID: 109 Name: MyDataset
12:56:18 ID: 114 Name: MyDataset
12:56:18 ID: 115 Name: MyDataset
12:56:18 ID: 116 Name: MyDataset
12:56:18 ID: 158 Name: MyDataset
12:56:18 ID: 159 Name: MyDataset
12:56:18 ID: 160 Name: MyDataset
12:56:18 ID: 164 Name: MyDataset
12:56:18 ID: 165 Name: MyDataset
12:56:18 ID: 166 Name: MyDataset
12:56:18 ID: 210 Name: MyDataset
12:56:18 ID: 208 Name: MyDataset
12:56:18 ID: 209 Name: MyDataset
12:56:18 ID: 214 Name: MyDataset
12:56:18 ID: 215 Name: MyDataset
12:56:18 ID: 216 Name: MyDataset
12:56:18 ID: 259 Name: MyDataset
12:56:18 ID: 258 Name: MyDataset
12:56:18 ID: 260 Name: MyDataset
12:56:18
12:56:18 List Tags:
12:56:18 ID: 8 Text: MyTag Desc: MyTag 0
12:56:18 ID: 9 Text: MyTag Desc: MyTag 1
12:56:18 ID: 10 Text: MyTag Desc: MyTag 2
12:56:18 ID: 16 Text: MyTag Desc: MyTag 0
12:56:18 ID: 17 Text: MyTag Desc: MyTag 1
12:56:18 ID: 18 Text: MyTag Desc: MyTag 2
12:56:18 ID: 58 Text: MyTag Desc: MyTag 0
12:56:18 ID: 59 Text: MyTag Desc: MyTag 1
12:56:18 ID: 60 Text: MyTag Desc: MyTag 2
12:56:18 ID: 66 Text: MyTag Desc: MyTag 0
12:56:18 ID: 67 Text: MyTag Desc: MyTag 1
12:56:18 ID: 68 Text: MyTag Desc: MyTag 2
12:56:18 ID: 108 Text: MyTag Desc: MyTag 0
12:56:18 ID: 109 Text: MyTag Desc: MyTag 1
12:56:18 ID: 110 Text: MyTag Desc: MyTag 2
12:56:18 ID: 116 Text: MyTag Desc: MyTag 0
12:56:18 ID: 117 Text: MyTag Desc: MyTag 1
12:56:18 ID: 118 Text: MyTag Desc: MyTag 2
12:56:18 ID: 158 Text: MyTag Desc: MyTag 0
12:56:18 ID: 159 Text: MyTag Desc: MyTag 1
12:56:18 ID: 160 Text: MyTag Desc: MyTag 2
12:56:18 ID: 166 Text: MyTag Desc: MyTag 0
12:56:18 ID: 167 Text: MyTag Desc: MyTag 1
12:56:18 ID: 168 Text: MyTag Desc: MyTag 2
12:56:18 ID: 208 Text: MyTag Desc: MyTag 0
12:56:18 ID: 209 Text: MyTag Desc: MyTag 1
12:56:18 ID: 210 Text: MyTag Desc: MyTag 2
12:56:18 ID: 216 Text: MyTag Desc: MyTag 0
12:56:18 ID: 217 Text: MyTag Desc: MyTag 1
12:56:18 ID: 218 Text: MyTag Desc: MyTag 2
12:56:18 ID: 258 Text: MyTag Desc: MyTag 0
12:56:18 ID: 259 Text: MyTag Desc: MyTag 1
12:56:18 ID: 260 Text: MyTag Desc: MyTag 2
12:56:18 New dataset, Id: 261
12:56:18 New dataset 2, Id: 262
12:56:18 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:56:18 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
12:56:18 [[ 0 0 0 ... 102 103 104]
12:56:18 [ 0 0 0 ... 102 103 104]
12:56:18 [ 0 0 0 ... 102 103 104]
12:56:18 ...
12:56:18 [ 5 6 7 ... 102 103 104]
12:56:18 [ 5 6 7 ... 102 103 104]
12:56:18 [ 5 6 7 ... 102 103 104]]
12:56:18 shape: (100, 100)
12:56:18 min: 0 max: 104 pixel type: uint8
12:56:18 Average : 53.9125
12:56:18 Getting data for T, tile: 0 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 1 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 2 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 3 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 4 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 5 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 6 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 7 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 8 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 9 (256, 0, 10, 512)
12:56:18 kymograph_data (512, 100)
12:56:18 Attaching kymograph.png to image
12:56:18 test&sizeT=10&sizeZ=5&sizeC=3.fake
12:56:18 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
12:56:18 [[ 0 0 0 ... 102 103 104]
12:56:18 [ 0 0 0 ... 102 103 104]
12:56:18 [ 0 0 0 ... 102 103 104]
12:56:18 ...
12:56:18 [ 5 6 7 ... 102 103 104]
12:56:18 [ 5 6 7 ... 102 103 104]
12:56:18 [ 5 6 7 ... 102 103 104]]
12:56:18 shape: (100, 100)
12:56:18 min: 0 max: 104 pixel type: uint8
12:56:18 Average : 53.9125
12:56:18 Getting data for T, tile: 0 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 1 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 2 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 3 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 4 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 5 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 6 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 7 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 8 (256, 0, 10, 512)
12:56:18 Getting data for T, tile: 9 (256, 0, 10, 512)
12:56:18 kymograph_data (512, 100)
12:56:18 Attaching kymograph.png to image
12:56:18 No file downloaded. Project not rated.
12:56:18 New image, Id: 262
12:56:18 Starting at: http://nginx/web/api/
12:56:18 CSRF token aXPEAUkOlql7o1c1uSjvOT5zeaYfD91R
12:56:18 Servers:
12:56:18 -id: 1
12:56:18 name: omero
12:56:18 host: omero
12:56:18 port: 4064
12:56:18 -id: 2
12:56:18 name: testintegration
12:56:18 host: testintegration
12:56:18 port: 14064
12:56:18 eventContext {'sessionId': 720, 'sessionUuid': 'e6892301-e316-4750-940b-7260486cf281', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
12:56:18 Projects:
12:56:18 2 Project 0
12:56:18 3 Project 0
12:56:18 Created Project: 256 API TEST foo
12:56:18 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 256, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/256/datasets/'}}
12:56:19 !! 07/16/26 12:56:19.043 error: communicator not destroyed during global destruction.+ deactivate
12:56:19 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:56:19 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:56:19 + export PATH
12:56:19 + unset _OLD_VIRTUAL_PATH
12:56:19 + '[' -n '' ']'
12:56:19 + hash -r
12:56:19 + '[' -n '' ']'
12:56:19 + unset VIRTUAL_ENV
12:56:19 + unset VIRTUAL_ENV_PROMPT
12:56:19 + '[' '!' '' = nondestructive ']'
12:56:19 + unset -f deactivate
12:56:19 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
12:56:19 + javac --release 11 -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
12:56:22 Note: Some input files use unchecked or unsafe operations.
12:56:22 Note: Recompile with -Xlint:unchecked for details.
12:56:22 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
12:56:26 omero.cmd.Delete2Response@5ed731d0
12:56:26 omero.cmd.Delete2Response@58e6d4b8
12:56:26 one [class java.lang.String] 1.0 [class java.lang.Double]
12:56:26 two [class java.lang.String] 2.0 [class java.lang.Double]
12:56:26 three [class java.lang.String] 3.0 [class java.lang.Double]
12:56:26 -1.0
12:56:26 0
12:56:26 1
12:56:26 2
12:56:29 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
12:56:29 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
12:56:29 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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12:56:29 Project:52 Project 0
12:56:29 Project:2 Project 0
12:56:29 Project:152 Project 0
12:56:29 Project:1 Project 1
12:56:29 dataset:1 Dataset 1-1
12:56:29 dataset:18 new Name 2
12:56:29 dataset:17 new Name 1
12:56:29 dataset:2 Dataset 1-2
12:56:29 dataset:7 New Dataset
12:56:29 Project:151 Project 1
12:56:29 dataset:168 new Name 2
12:56:29 dataset:167 new Name 1
12:56:29 dataset:152 Dataset 1-2
12:56:29 dataset:157 New Dataset
12:56:29 dataset:151 Dataset 1-1
12:56:29 Project:251 Project 1
12:56:29 dataset:252 Dataset 1-2
12:56:29 dataset:251 Dataset 1-1
12:56:29 dataset:257 New Dataset
12:56:29 Project:51 Project 1
12:56:29 dataset:57 New Dataset
12:56:29 dataset:51 Dataset 1-1
12:56:29 dataset:67 new Name 1
12:56:29 dataset:68 new Name 2
12:56:29 dataset:52 Dataset 1-2
12:56:29 Project:201 Project 1
12:56:29 dataset:218 new Name 2
12:56:29 dataset:217 new Name 1
12:56:29 dataset:207 New Dataset
12:56:29 dataset:202 Dataset 1-2
12:56:29 dataset:201 Dataset 1-1
12:56:29 Project:101 Project 1
12:56:29 dataset:117 new Name 1
12:56:29 dataset:101 Dataset 1-1
12:56:29 dataset:118 new Name 2
12:56:29 dataset:107 New Dataset
12:56:29 dataset:102 Dataset 1-2
12:56:29 Project:202 Project 0
12:56:29 Project:102 Project 0
12:56:29 Project:252 Project 0
12:56:29 image:252 test.fake
12:56:29 image:262 New Image
12:56:29 image:263 newImageFrom253
12:56:29 5
12:56:29 10
12:56:29 3
12:56:29 512
12:56:29 512
12:56:29 screen:101 Screen
12:56:29 plate:101 Plate
12:56:29 plate:102 Plate Name 0
12:56:29 screen:102 Screen
12:56:29 screen:52 Screen
12:56:29 screen:152 Screen
12:56:29 screen:201 Screen
12:56:29 plate:201 Plate
12:56:29 plate:202 Plate Name 0
12:56:29 screen:202 Screen
12:56:29 screen:251 Screen
12:56:29 plate:252 Plate Name 0
12:56:29 plate:251 Plate
12:56:29 screen:1 Screen
12:56:29 plate:1 Plate
12:56:29 plate:2 Plate Name 0
12:56:29 screen:2 Screen
12:56:29 screen:151 Screen
12:56:29 plate:152 Plate Name 0
12:56:29 plate:151 Plate
12:56:29 screen:252 Screen
12:56:29 screen:51 Screen
12:56:29 plate:51 Plate
12:56:29 plate:52 Plate Name 0
12:56:29 well:251
12:56:29 well:252
12:56:29 well:253
12:56:29 plate:151
12:56:29 plate:102
12:56:29 plate:103
12:56:29 plate:252
12:56:29 plate:101
12:56:29 plate:52
12:56:29 plate:202
12:56:29 plate:253
12:56:29 plate:1
12:56:29 plate:2
12:56:29 plate:152
12:56:29 plate:251
12:56:29 plate:51
12:56:29 plate:153
12:56:29 plate:3
12:56:29 plate:201
12:56:29 plate:203
12:56:29 plate:53
12:56:29
12:56:29 List Datasets:
12:56:29 ID: 8 Name: MyDataset
12:56:29 ID: 9 Name: MyDataset
12:56:29 ID: 10 Name: MyDataset
12:56:29 ID: 14 Name: MyDataset
12:56:29 ID: 15 Name: MyDataset
12:56:29 ID: 16 Name: MyDataset
12:56:29 ID: 58 Name: MyDataset
12:56:29 ID: 59 Name: MyDataset
12:56:29 ID: 60 Name: MyDataset
12:56:29 ID: 64 Name: MyDataset
12:56:29
12:56:29 List Tags:
12:56:29 ID: 16 NS: omero.training.demo
12:56:29 ID: 17 NS: omero.training.demo
12:56:29 ID: 18 NS: omero.training.demo
12:56:29 ID: 66 NS: omero.training.demo
12:56:29 ID: 67 NS: omero.training.demo
12:56:29 ID: 68 NS: omero.training.demo
12:56:29 ID: 116 NS: omero.training.demo
12:56:29 ID: 117 NS: omero.training.demo
12:56:29 ID: 118 NS: omero.training.demo
12:56:29 ID: 166 NS: omero.training.demo
12:56:29 Dataset:62 New Dataset2
12:56:29 Project:51 Project 1
12:56:29 Dataset:15 MyDataset
12:56:29 Dataset:113 FileAnnotationDelete
12:56:29 Dataset:209 MyDataset
12:56:29 Dataset:259 MyDataset
12:56:29 Dataset:215 MyDataset
12:56:29 Dataset:154 Orphaned dataset 2
12:56:29 Dataset:162 New Dataset2
12:56:29 Dataset:108 MyDataset
12:56:29 Dataset:212 New Dataset2
12:56:29 Dataset:216 MyDataset
12:56:29 Dataset:115 MyDataset
12:56:29 Dataset:65 MyDataset
12:56:29 Dataset:159 MyDataset
12:56:29 Dataset:13 FileAnnotationDelete
12:56:29 Dataset:58 MyDataset
12:56:29 Dataset:164 MyDataset
12:56:29 Dataset:263 FileAnnotationDelete
12:56:29 Dataset:158 MyDataset
12:56:29 Dataset:116 MyDataset
12:56:29 Dataset:265 MyDataset
12:56:29 Dataset:53 Orphaned dataset 1
12:56:29 Dataset:63 FileAnnotationDelete
12:56:29 Dataset:211 New Dataset
12:56:29 Dataset:210 MyDataset
12:56:29 Dataset:160 MyDataset
12:56:29 Dataset:165 MyDataset
12:56:29 Dataset:109 MyDataset
12:56:29 Dataset:253 Orphaned dataset 1
12:56:29 Dataset:112 New Dataset2
12:56:29 Dataset:153 Orphaned dataset 1
12:56:29 Dataset:208 MyDataset
12:56:29 Dataset:4 Orphaned dataset 2
12:56:29 Dataset:9 MyDataset
12:56:29 Dataset:59 MyDataset
12:56:29 Dataset:266 MyDataset
12:56:29 Dataset:103 Orphaned dataset 1
12:56:29 Dataset:104 Orphaned dataset 2
12:56:29 Dataset:54 Orphaned dataset 2
12:56:29 Project:101 Project 1
12:56:29 Dataset:14 MyDataset
12:56:29 Dataset:8 MyDataset
12:56:29 Dataset:213 FileAnnotationDelete
12:56:29 Dataset:61 New Dataset
12:56:29 Project:151 Project 1
12:56:29 Dataset:110 MyDataset
12:56:29 Dataset:10 MyDataset
12:56:29 Dataset:111 New Dataset
12:56:29 Dataset:261 New Dataset
12:56:29 Dataset:60 MyDataset
12:56:29 Dataset:260 MyDataset
12:56:29 Dataset:262 New Dataset2
12:56:29 Dataset:264 MyDataset
12:56:29 Dataset:3 Orphaned dataset 1
12:56:29 Dataset:64 MyDataset
12:56:29 Dataset:203 Orphaned dataset 1
12:56:29 Dataset:163 FileAnnotationDelete
12:56:29 Dataset:114 MyDataset
12:56:29 Dataset:66 MyDataset
12:56:29 Dataset:16 MyDataset
12:56:29 Dataset:214 MyDataset
12:56:29 Project:201 Project 1
12:56:29 Dataset:11 New Dataset
12:56:29 Dataset:161 New Dataset
12:56:29 Dataset:204 Orphaned dataset 2
12:56:29 Dataset:12 New Dataset2
12:56:29 Dataset:258 MyDataset
12:56:29 Project:1 Project 1
12:56:29 Dataset:254 Orphaned dataset 2
12:56:29 Dataset:166 MyDataset
12:56:29 Project:251 Project 1
12:56:29 Size:0
12:56:30 512 512
12:56:30 9
12:56:30 9
12:56:30 1
12:56:32 Logged in as ladmin_user
12:56:32 Added 'training_user's tag' to dataset MyDataset on behalf of training_user
12:56:32 Added 'ladmin_user's tag' to dataset MyDataset as admin.
12:56:32 Finished: SUCCESS
