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Skipping 2,127 KB.. Full Log
#14 297.3 Progress (2): 330/780 kB | 16/338 kB
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Progress (3): 780 kB | 338 kB | 0/6.0 MB
                                        
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar (780 kB at 5.8 MB/s)
#14 297.3 Downloaded from central: https://repo.maven.apache.org/maven2/commons-math/commons-math/1.2/commons-math-1.2.jar (338 kB at 2.4 MB/s)
#14 297.3 Progress (1): 0.1/6.0 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar (6.0 MB at 14 MB/s)
#14 297.6 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 297.6 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#14 297.8 Progress (1): 0/4.3 MB
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 87 kB/s)
#14 298.5 Progress (1): 0.6/4.3 MB
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 300.5 [INFO] 
#14 300.5 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ formats-gpl ---
#14 300.5 [INFO] 
#14 300.5 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ formats-gpl ---
#14 300.5 [INFO] 
#14 300.5 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ formats-gpl ---
#14 300.5 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.5 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 300.5 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247878018
#14 300.5 [WARNING] Cannot get the branch information from the git repository: 
#14 300.5 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 300.5 
#14 300.5 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.5 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 300.5 [INFO] Storing buildScmBranch: UNKNOWN
#14 300.5 [INFO] 
#14 300.5 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ formats-gpl ---
#14 300.5 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 300.5 [INFO] Copying 1 resource
#14 300.5 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 300.5 [INFO] Copying 0 resource
#14 300.5 [INFO] Copying 1 resource
#14 300.5 [INFO] 
#14 300.5 [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ formats-gpl ---
#14 300.5 [INFO] Changes detected - recompiling the module!
#14 300.5 [INFO] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 302.6 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 302.6 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 302.6 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 302.6 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 302.6 [INFO] 
#14 302.6 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ formats-gpl ---
#14 302.6 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 302.6 [INFO] Copying 24 resources
#14 302.6 [INFO] 
#14 302.6 [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ formats-gpl ---
#14 302.6 [INFO] Changes detected - recompiling the module!
#14 302.6 [INFO] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 302.8 [INFO] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 302.8 [INFO] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 302.8 [INFO] 
#14 302.8 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ formats-gpl ---
#14 302.8 [INFO] 
#14 302.8 [INFO] -------------------------------------------------------
#14 302.8 [INFO]  T E S T S
#14 302.8 [INFO] -------------------------------------------------------
#14 302.9 [INFO] Running TestSuite
#14 304.1 2024-10-30 00:24:41,681 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@66f66866 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.1 2024-10-30 00:24:41,685 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@589b028e reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.2 2024-10-30 00:24:41,737 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3163987e reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.2 2024-10-30 00:24:41,738 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2577d6c8 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.2 2024-10-30 00:24:41,789 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@511816c0 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.2 2024-10-30 00:24:41,789 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@68105edc reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.3 2024-10-30 00:24:41,839 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@412c995d reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.3 2024-10-30 00:24:41,839 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@497570fb reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.3 2024-10-30 00:24:41,887 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4159e81b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.3 2024-10-30 00:24:41,888 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@40226788 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.4 2024-10-30 00:24:41,946 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2adddc06 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.4 2024-10-30 00:24:41,946 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@301d8120 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.4 2024-10-30 00:24:41,990 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@6bcbf05b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.4 2024-10-30 00:24:41,990 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@458544e0 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.5 2024-10-30 00:24:42,031 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@b558294 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.5 2024-10-30 00:24:42,031 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5560bcdf reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 304.7 [INFO] Tests run: 99, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.764 s - in TestSuite
#14 305.0 [INFO] 
#14 305.0 [INFO] Results:
#14 305.0 [INFO] 
#14 305.0 [INFO] Tests run: 99, Failures: 0, Errors: 0, Skipped: 0
#14 305.0 [INFO] 
#14 305.0 [INFO] 
#14 305.0 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-mdb-test) @ formats-gpl ---
#14 305.0 [INFO] 
#14 305.0 [INFO] -------------------------------------------------------
#14 305.0 [INFO]  T E S T S
#14 305.0 [INFO] -------------------------------------------------------
#14 305.2 [INFO] Running TestSuite
#14 305.6 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.396 s - in TestSuite
#14 305.9 [INFO] 
#14 305.9 [INFO] Results:
#14 305.9 [INFO] 
#14 305.9 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 305.9 [INFO] 
#14 305.9 [INFO] 
#14 305.9 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-poi-test) @ formats-gpl ---
#14 305.9 [INFO] 
#14 305.9 [INFO] -------------------------------------------------------
#14 305.9 [INFO]  T E S T S
#14 305.9 [INFO] -------------------------------------------------------
#14 306.1 [INFO] Running TestSuite
#14 306.5 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.42 s - in TestSuite
#14 306.8 [INFO] 
#14 306.8 [INFO] Results:
#14 306.8 [INFO] 
#14 306.8 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 306.8 [INFO] 
#14 306.8 [INFO] 
#14 306.8 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-netcdf-test) @ formats-gpl ---
#14 306.8 [INFO] 
#14 306.8 [INFO] -------------------------------------------------------
#14 306.8 [INFO]  T E S T S
#14 306.8 [INFO] -------------------------------------------------------
#14 307.0 [INFO] Running TestSuite
#14 307.4 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.405 s - in TestSuite
#14 307.7 [INFO] 
#14 307.7 [INFO] Results:
#14 307.7 [INFO] 
#14 307.7 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 307.7 [INFO] 
#14 307.7 [INFO] 
#14 307.7 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ formats-gpl ---
#14 307.8 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar
#14 307.8 [INFO] 
#14 307.8 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ formats-gpl >>>
#14 307.8 [INFO] 
#14 307.8 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ formats-gpl ---
#14 307.8 [INFO] 
#14 307.8 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ formats-gpl ---
#14 307.8 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.8 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 307.8 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247885344
#14 307.8 [WARNING] Cannot get the branch information from the git repository: 
#14 307.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 307.8 
#14 307.8 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.8 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 307.8 [INFO] Storing buildScmBranch: UNKNOWN
#14 307.8 [INFO] 
#14 307.8 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ formats-gpl <<<
#14 307.8 [INFO] 
#14 307.8 [INFO] 
#14 307.8 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ formats-gpl ---
#14 307.8 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 307.9 [INFO] 
#14 307.9 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ formats-gpl ---
#14 307.9 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 307.9 [INFO] 
#14 307.9 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ formats-gpl ---
#14 307.9 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#14 307.9 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#14 307.9 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 307.9 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 307.9 [INFO] 
#14 307.9 [INFO] ----------------------< ome:bio-formats_plugins >-----------------------
#14 307.9 [INFO] Building Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT           [18/25]
#14 307.9 [INFO] --------------------------------[ jar ]---------------------------------
#14 307.9 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 307.9 Progress (1): 4.1/7.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom (7.9 kB at 293 kB/s)
#14 307.9 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
#14 308.0 Progress (1): 0/2.5 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
#14 308.1 [INFO] 
#14 308.1 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bio-formats_plugins ---
#14 308.1 [INFO] 
#14 308.1 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats_plugins ---
#14 308.1 [INFO] 
#14 308.1 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats_plugins ---
#14 308.1 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.1 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.1 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247885622
#14 308.1 [WARNING] Cannot get the branch information from the git repository: 
#14 308.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 308.1 
#14 308.1 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.1 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.1 [INFO] Storing buildScmBranch: UNKNOWN
#14 308.1 [INFO] 
#14 308.1 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats_plugins ---
#14 308.1 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 308.1 [INFO] Copying 3 resources
#14 308.1 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 308.1 [INFO] Copying 0 resource
#14 308.1 [INFO] Copying 0 resource
#14 308.1 [INFO] 
#14 308.1 [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats_plugins ---
#14 308.1 [INFO] Changes detected - recompiling the module!
#14 308.1 [INFO] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 308.5 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 308.5 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 308.5 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 308.5 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 308.5 [INFO] 
#14 308.5 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats_plugins ---
#14 308.5 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 308.5 [INFO] Copying 1 resource
#14 308.5 [INFO] 
#14 308.5 [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ bio-formats_plugins ---
#14 308.5 [INFO] Changes detected - recompiling the module!
#14 308.5 [INFO] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 308.7 [INFO] 
#14 308.7 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats_plugins ---
#14 308.7 [INFO] 
#14 308.7 [INFO] -------------------------------------------------------
#14 308.7 [INFO]  T E S T S
#14 308.7 [INFO] -------------------------------------------------------
#14 308.9 [INFO] Running TestSuite
#14 310.1 Warning: Data has too many channels for Colorized color mode
#14 310.1 Warning: Data has too many channels for Colorized color mode
#14 310.2 Warning: Data has too many channels for Colorized color mode
#14 310.2 Warning: Data has too many channels for Colorized color mode
#14 310.3 Warning: Data has too many channels for Colorized color mode
#14 310.3 Warning: Data has too many channels for Colorized color mode
#14 310.4 Warning: Data has too many channels for Colorized color mode
#14 310.4 Warning: Data has too many channels for Colorized color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.5 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.4 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Custom color mode
#14 312.4 Warning: Data has too many channels for Custom color mode
#14 312.4 Warning: Data has too many channels for Custom color mode
#14 312.4 Warning: Data has too many channels for Custom color mode
#14 312.4 Warning: Data has too many channels for Custom color mode
#14 312.5 Warning: Data has too many channels for Custom color mode
#14 312.5 Warning: Data has too many channels for Custom color mode
#14 312.5 Warning: Data has too many channels for Custom color mode
#14 312.5 Warning: Data has too many channels for Default color mode
#14 312.5 Warning: Data has too many channels for Default color mode
#14 312.6 Warning: Data has too many channels for Default color mode
#14 312.6 Warning: Data has too many channels for Default color mode
#14 312.6 Warning: Data has too many channels for Default color mode
#14 312.6 Warning: Data has too many channels for Default color mode
#14 312.7 Warning: Data has too many channels for Default color mode
#14 312.7 Warning: Data has too many channels for Default color mode
#14 312.7 Warning: Data has too many channels for Default color mode
#14 312.7 Warning: Data has too many channels for Default color mode
#14 312.7 Warning: Data has too many channels for Default color mode
#14 312.8 Warning: Data has too many channels for Default color mode
#14 312.8 Warning: Data has too many channels for Default color mode
#14 312.8 Warning: Data has too many channels for Default color mode
#14 312.8 Warning: Data has too many channels for Default color mode
#14 312.9 Warning: Data has too many channels for Default color mode
#14 312.9 Warning: Data has too many channels for Grayscale color mode
#14 312.9 Warning: Data has too many channels for Grayscale color mode
#14 312.9 Warning: Data has too many channels for Grayscale color mode
#14 313.0 Warning: Data has too many channels for Grayscale color mode
#14 313.0 Warning: Data has too many channels for Grayscale color mode
#14 313.0 Warning: Data has too many channels for Grayscale color mode
#14 313.0 Warning: Data has too many channels for Grayscale color mode
#14 313.1 Warning: Data has too many channels for Grayscale color mode
#14 313.1 Warning: Data has too many channels for Colorized color mode
#14 313.1 Warning: Data has too many channels for Colorized color mode
#14 313.1 Warning: Data has too many channels for Colorized color mode
#14 313.7 Warning: Data has too many channels for Default color mode
#14 313.9 [INFO] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.046 s - in TestSuite
#14 314.2 [INFO] 
#14 314.2 [INFO] Results:
#14 314.2 [INFO] 
#14 314.2 [INFO] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0
#14 314.2 [INFO] 
#14 314.3 [INFO] 
#14 314.3 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ bio-formats_plugins ---
#14 314.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 314.3 [INFO] 
#14 314.3 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ bio-formats_plugins >>>
#14 314.3 [INFO] 
#14 314.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats_plugins ---
#14 314.3 [INFO] 
#14 314.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats_plugins ---
#14 314.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 314.3 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247891827
#14 314.3 [WARNING] Cannot get the branch information from the git repository: 
#14 314.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 314.3 
#14 314.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 314.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 314.3 [INFO] 
#14 314.3 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ bio-formats_plugins <<<
#14 314.3 [INFO] 
#14 314.3 [INFO] 
#14 314.3 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ bio-formats_plugins ---
#14 314.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 314.3 [INFO] 
#14 314.3 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ bio-formats_plugins ---
#14 314.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 314.3 [INFO] 
#14 314.3 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bio-formats_plugins ---
#14 314.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 314.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#14 314.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 314.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 314.3 [INFO] 
#14 314.3 [INFO] -----------------------< ome:bio-formats-tools >------------------------
#14 314.3 [INFO] Building Bio-Formats command line tools 8.1.0-SNAPSHOT           [19/25]
#14 314.3 [INFO] --------------------------------[ jar ]---------------------------------
#14 314.3 [INFO] 
#14 314.3 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bio-formats-tools ---
#14 314.3 [INFO] 
#14 314.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats-tools ---
#14 314.3 [INFO] 
#14 314.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats-tools ---
#14 314.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 314.3 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247891895
#14 314.4 [WARNING] Cannot get the branch information from the git repository: 
#14 314.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 314.4 
#14 314.4 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.4 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 314.4 [INFO] Storing buildScmBranch: UNKNOWN
#14 314.4 [INFO] 
#14 314.4 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats-tools ---
#14 314.4 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 314.4 [INFO] Copying 0 resource
#14 314.4 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 314.4 [INFO] Copying 0 resource
#14 314.4 [INFO] Copying 0 resource
#14 314.4 [INFO] 
#14 314.4 [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ bio-formats-tools ---
#14 314.4 [INFO] Changes detected - recompiling the module!
#14 314.4 [INFO] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 314.5 [INFO] 
#14 314.5 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats-tools ---
#14 314.5 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 314.5 [INFO] Copying 1 resource
#14 314.5 [INFO] 
#14 314.5 [INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ bio-formats-tools ---
#14 314.5 [INFO] Changes detected - recompiling the module!
#14 314.5 [INFO] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 314.6 [INFO] 
#14 314.6 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats-tools ---
#14 314.7 [INFO] 
#14 314.7 [INFO] -------------------------------------------------------
#14 314.7 [INFO]  T E S T S
#14 314.7 [INFO] -------------------------------------------------------
#14 314.8 [INFO] Running loci.formats.tools.ImageConverterTest
#14 377.9 [INFO] Tests run: 55, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 63.109 s - in loci.formats.tools.ImageConverterTest
#14 378.3 [INFO] 
#14 378.3 [INFO] Results:
#14 378.3 [INFO] 
#14 378.3 [INFO] Tests run: 55, Failures: 0, Errors: 0, Skipped: 0
#14 378.3 [INFO] 
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ bio-formats-tools ---
#14 378.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 378.3 [INFO] 
#14 378.3 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ bio-formats-tools >>>
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats-tools ---
#14 378.3 [INFO] 
#14 378.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats-tools ---
#14 378.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 378.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 378.3 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247955837
#14 378.3 [WARNING] Cannot get the branch information from the git repository: 
#14 378.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 378.3 
#14 378.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 378.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 378.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 378.3 [INFO] 
#14 378.3 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ bio-formats-tools <<<
#14 378.3 [INFO] 
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ bio-formats-tools ---
#14 378.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ bio-formats-tools ---
#14 378.3 [INFO] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bio-formats-tools ---
#14 378.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 378.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#14 378.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 378.3 [INFO] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 378.3 [INFO] 
#14 378.3 [INFO] -----------------------< ome:bioformats_package >-----------------------
#14 378.3 [INFO] Building bioformats_package bundle 8.1.0-SNAPSHOT                [20/25]
#14 378.3 [INFO] --------------------------------[ pom ]---------------------------------
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bioformats_package ---
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bioformats_package ---
#14 378.3 [INFO] 
#14 378.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bioformats_package ---
#14 378.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 378.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 378.3 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247955880
#14 378.3 [WARNING] Cannot get the branch information from the git repository: 
#14 378.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 378.3 
#14 378.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 378.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 378.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 378.3 [INFO] 
#14 378.3 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ bioformats_package >>>
#14 378.3 [INFO] 
#14 378.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bioformats_package ---
#14 378.3 [INFO] 
#14 378.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bioformats_package ---
#14 378.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 378.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 378.3 [INFO] Storing buildNumber: 8ea1d1d713689298f26891d17b9a9dab78fba3b1 at timestamp: 1730247955896
#14 378.4 [WARNING] Cannot get the branch information from the git repository: 
#14 378.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 378.4 
#14 378.4 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 378.4 [INFO] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 378.4 [INFO] Storing buildScmBranch: UNKNOWN
#14 378.4 [INFO] 
#14 378.4 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ bioformats_package <<<
#14 378.4 [INFO] 
#14 378.4 [INFO] 
#14 378.4 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ bioformats_package ---
#14 378.4 [INFO] 
#14 378.4 [INFO] --- maven-assembly-plugin:3.1.0:single (make-assembly) @ bioformats_package ---
#14 378.5 [INFO] Reading assembly descriptor: assembly.xml
#14 378.7 [WARNING] The following patterns were never triggered in this artifact exclusion filter:
#14 378.7 o  'gov.nih.imagej:imagej'
#14 378.7 o  'net.imagej:ij'
#14 378.7 o  'org.springframework:spring*'
#14 378.7 o  'aopalliance:aopalliance'
#14 378.7 o  'org.aspectj:aspectj*'
#14 378.7 o  'org.slf4j:slf4j-log4j12'
#14 378.7 o  'log4j:log4j'
#14 378.7 o  'org.testng:testng'
#14 378.7 o  'com.beust:jcommander'
#14 378.7 o  'org.beanshell:bsh'
#14 378.7 o  'edu.princeton.cup:java-cup'
#14 378.7 o  'org.apache.bcel:bcel'
#14 378.7 o  'regexp:regexp'
#14 378.7 o  'org.apache.ant:ant-trax'
#14 378.7 o  'edu.ucar:udunits'
#14 378.7 o  'javax.servlet:servlet-api'
#14 378.7 
#14 378.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
#14 378.7 Progress (1): 4.1/11 kB
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#14 378.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/7/felix-parent-7.pom
#14 378.8 Progress (1): 4.1/21 kB
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#14 378.8 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom
#14 378.8 Progress (1): 1.1 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom (1.1 kB at 44 kB/s)
#14 378.9 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
#14 378.9 Progress (1): 4.1/5.2 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom (5.2 kB at 202 kB/s)
#14 379.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom
#14 379.2 Progress (1): 1.3 kB
                    
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#14 379.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom
#14 379.2 Progress (1): 1.3 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom (1.3 kB at 47 kB/s)
#14 379.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom
#14 379.3 Progress (1): 1.3 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom (1.3 kB at 51 kB/s)
#14 379.4 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom
#14 379.4 Progress (1): 1.9 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom (1.9 kB at 72 kB/s)
#14 379.5 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom
#14 379.5 Progress (1): 1.5 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom (1.5 kB at 59 kB/s)
#14 379.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.pom
#14 379.6 Progress (1): 1.3 kB
                    
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#14 379.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.pom
#14 379.6 Progress (1): 1.3 kB
                    
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#14 379.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.2.0/org.osgi.util.function-1.2.0.pom
#14 379.6 Progress (1): 1.7 kB
                    
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#14 379.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.promise/1.2.0/org.osgi.util.promise-1.2.0.pom
#14 379.8 Progress (1): 1.9 kB
                    
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#14 379.8 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.1.0/org.osgi.util.function-1.1.0.pom
#14 379.8 Progress (1): 1.4 kB
                    
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#14 379.9 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/6.3.1/biz.aQute.bnd.util-6.3.1.pom
#14 379.9 Progress (1): 2.7 kB
                    
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#14 379.9 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.pom
#14 380.0 Progress (1): 3.8 kB
                    
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#14 380.0 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.7.25/slf4j-parent-1.7.25.pom
#14 380.0 Progress (1): 4.1/14 kB
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#14 380.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlereposi
#14 380.0 [output clipped, log limit 2MiB reached]
#14 486.5 SLF4J: No SLF4J providers were found.
#14 486.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 486.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 499.5s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s

#16 [12/13] RUN ant jars tools
#16 0.465 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.823      [echo] isSnapshot = true
#16 1.925 
#16 1.925 copy-jars:
#16 1.925 
#16 1.925 deps-formats-api:
#16 2.009      [echo] isSnapshot = true
#16 2.062 
#16 2.062 install-pom:
#16 2.237 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 2.421 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 2.425 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.427 
#16 2.427 jar-formats-api:
#16 2.545      [echo] isSnapshot = true
#16 2.697 
#16 2.697 init-title:
#16 2.698      [echo] ----------=========== formats-api ===========----------
#16 2.698 
#16 2.698 init-timestamp:
#16 2.704 
#16 2.704 init:
#16 2.705 
#16 2.705 copy-resources:
#16 2.705     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.718      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.721 
#16 2.721 compile:
#16 2.908 [resolver:resolve] Resolving artifacts
#16 2.934     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.192     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.793     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.793     [javac] import loci.common.ReflectedUniverse;
#16 3.793     [javac]                   ^
#16 3.994     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.994     [javac]     int currentIndex = r.getCoreIndex();
#16 3.994     [javac]                         ^
#16 3.994     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.994     [javac]     r.setCoreIndex(coreIndex);
#16 3.994     [javac]      ^
#16 3.994     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.994     [javac]     r.setCoreIndex(currentIndex);
#16 3.994     [javac]      ^
#16 4.194     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.194     [javac]   public void setCoreIndex(int no) {
#16 4.194     [javac]               ^
#16 4.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.195     [javac]   public int getCoreIndex() {
#16 4.195     [javac]              ^
#16 4.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.195     [javac]   public int coreIndexToSeries(int index)
#16 4.195     [javac]              ^
#16 4.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.195     [javac]   public int seriesToCoreIndex(int series)
#16 4.195     [javac]              ^
#16 4.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.195     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.195     [javac]                             ^
#16 4.295     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.295     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.295     [javac]                                              ^
#16 4.295     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.295     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.295     [javac]                                              ^
#16 4.295     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.295     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.296     [javac]                                                      ^
#16 4.296     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.296     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.296     [javac]                                                      ^
#16 4.396     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.396     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 4.396     [javac]     ^
#16 4.396     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.396     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 4.396     [javac]                               ^
#16 4.496     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.496     [javac]   public void setCoreIndex(int no) {
#16 4.496     [javac]               ^
#16 4.496     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.497     [javac]   public int getCoreIndex() {
#16 4.497     [javac]              ^
#16 4.497     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.497     [javac]   public int coreIndexToSeries(int index) {
#16 4.497     [javac]              ^
#16 4.497     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.497     [javac]   public int seriesToCoreIndex(int series) {
#16 4.497     [javac]              ^
#16 4.497     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.497     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.497     [javac]                             ^
#16 4.497     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.497     [javac]     return getReader().getCoreMetadataList();
#16 4.497     [javac]                       ^
#16 4.497     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.497     [javac]     return getReader().getCoreIndex();
#16 4.497     [javac]                       ^
#16 4.497     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.497     [javac]     getReader().setCoreIndex(no);
#16 4.497     [javac]                ^
#16 4.497     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.498     [javac]     return getReader().seriesToCoreIndex(series);
#16 4.498     [javac]                       ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.498     [javac]     return getReader().coreIndexToSeries(index);
#16 4.498     [javac]                       ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.498     [javac]   public void setCoreIndex(int no) {
#16 4.498     [javac]               ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.498     [javac]   public int getCoreIndex() {
#16 4.498     [javac]              ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.498     [javac]   public int coreIndexToSeries(int index) {
#16 4.498     [javac]              ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.498     [javac]   public int seriesToCoreIndex(int series) {
#16 4.498     [javac]              ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.498     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.498     [javac]                             ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.498     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.498     [javac]                                        ^
#16 4.498     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.498     [javac]     return reader.getCoreIndex();
#16 4.499     [javac]                  ^
#16 4.499     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.499     [javac]     reader.setCoreIndex(no);
#16 4.499     [javac]           ^
#16 4.499     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.499     [javac]     return reader.seriesToCoreIndex(series);
#16 4.499     [javac]                  ^
#16 4.499     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.499     [javac]     return reader.coreIndexToSeries(index);
#16 4.499     [javac]                  ^
#16 4.699     [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.699     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.699     [javac] 36 warnings
#16 4.722 
#16 4.722 formats-api.jar:
#16 4.722     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.746       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.777 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 4.781 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 4.783 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 4.785 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.787 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.788 
#16 4.788 deps-turbojpeg:
#16 4.788 
#16 4.788 jar-turbojpeg:
#16 4.885      [echo] isSnapshot = true
#16 5.032 
#16 5.032 init-title:
#16 5.032      [echo] ----------=========== turbojpeg ===========----------
#16 5.032 
#16 5.032 init-timestamp:
#16 5.033 
#16 5.033 init:
#16 5.033 
#16 5.033 copy-resources:
#16 5.033     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.034 
#16 5.034 compile:
#16 5.044 [resolver:resolve] Resolving artifacts
#16 5.047     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.250     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.850     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.850     [javac]   protected void finalize() throws Throwable {
#16 5.850     [javac]                  ^
#16 5.850     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.850     [javac]       super.finalize();
#16 5.850     [javac]            ^
#16 5.850     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.850     [javac]   protected void finalize() throws Throwable {
#16 5.850     [javac]                  ^
#16 5.850     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.850     [javac]       super.finalize();
#16 5.850     [javac]            ^
#16 5.917     [javac] 5 warnings
#16 5.917 
#16 5.917 jar:
#16 5.922       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.105 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 6.112 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 6.171 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 6.173 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 6.177 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.178 
#16 6.178 deps-formats-bsd:
#16 6.178 
#16 6.178 jar-formats-bsd:
#16 6.298      [echo] isSnapshot = true
#16 6.440 
#16 6.440 init-title:
#16 6.440      [echo] ----------=========== formats-bsd ===========----------
#16 6.440 
#16 6.440 init-timestamp:
#16 6.441 
#16 6.441 init:
#16 6.441 
#16 6.441 copy-resources:
#16 6.441     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.444      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.445 
#16 6.445 compile:
#16 6.655 [resolver:resolve] Resolving artifacts
#16 6.683     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.891     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.992     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.992     [javac] import loci.common.ReflectedUniverse;
#16 7.992     [javac]                   ^
#16 8.392     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.392     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 8.392     [javac]                            ^
#16 8.392     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.392     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.392     [javac]                                          ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.393     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.393     [javac]                   ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.393     [javac]     reader.setCoreIndex(coreIndex);
#16 8.393     [javac]           ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.393     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.393     [javac]                   ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.393     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.393     [javac]                   ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.393     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.393     [javac]                                         ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.393     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.393     [javac]                   ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.393     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.393     [javac]                                         ^
#16 8.393     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.393     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.393     [javac]                   ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.394     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.394     [javac]                                  ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.394     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.394     [javac]                  ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.394     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.394     [javac]                                              ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.394     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 8.394     [javac]                             ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.394     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.394     [javac]               ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.394     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 8.394     [javac]                           ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.394     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.394     [javac]                 ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.394     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.394     [javac]               ^
#16 8.394     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.394     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.394     [javac]                            ^
#16 8.595     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.595     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.595     [javac]                               ^
#16 8.695     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.695     [javac]     BitWriter out = new BitWriter();
#16 8.695     [javac]     ^
#16 8.695     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.695     [javac]     BitWriter out = new BitWriter();
#16 8.695     [javac]                         ^
#16 8.795     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.795     [javac]       return new Double(v);
#16 8.795     [javac]              ^
#16 9.496     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.496     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.496     [javac]                                         ^
#16 9.496     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.496     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.496     [javac]                                         ^
#16 9.496     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.496     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.496     [javac]                                         ^
#16 9.596     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.596     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#16 9.596     [javac]                                 ^
#16 9.797     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.797     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.797     [javac]                                                                    ^
#16 9.897     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.897     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 9.897     [javac]                          ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.10     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.10     [javac]                                                    ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.10     [javac]   protected ReflectedUniverse r;
#16 10.10     [javac]             ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.10     [javac]       r = new ReflectedUniverse();
#16 10.10     [javac]               ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 10.10     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.10     [javac]                                                                               ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.10     [javac]                                                                                ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.10     [javac]                                                                                   ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.10     [javac]                                                                                   ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.10     [javac]                                                                                        ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.10     [javac]                                                                                         ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.10     [javac]                                                                                        ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.10     [javac]                                                                                                               ^
#16 10.10     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 10.10     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.10     [javac]                                                                                                               ^
#16 10.20     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.20     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.20     [javac]               ^
#16 10.20     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.20     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.20     [javac]                                            ^
#16 10.20     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.20     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.20     [javac]               ^
#16 10.20     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.20     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.20     [javac]                                             ^
#16 10.30     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.30     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.30     [javac]                                        ^
#16 10.30     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.30     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.30     [javac]                           ^
#16 10.30     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.30     [javac]       result[i] = new Double(readNumber().doubleValue());
#16 10.30     [javac]                   ^
#16 10.30     [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.30     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.30     [javac] 50 warnings
#16 10.32 
#16 10.32 formats-bsd.jar:
#16 10.33       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.43 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 10.44 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 10.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 10.48 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 10.48 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.48 
#16 10.48 deps-formats-gpl:
#16 10.48 
#16 10.48 jar-formats-gpl:
#16 10.58      [echo] isSnapshot = true
#16 10.72 
#16 10.72 init-title:
#16 10.72      [echo] ----------=========== formats-gpl ===========----------
#16 10.72 
#16 10.72 init-timestamp:
#16 10.72 
#16 10.72 init:
#16 10.72 
#16 10.72 copy-resources:
#16 10.72     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.72      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.72 
#16 10.72 compile:
#16 11.08 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.32 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.35 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.36 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.37 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.38 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.40 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.45 [resolver:resolve] Resolving artifacts
#16 11.46 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.46 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.50 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.50 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.51 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.51 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.53     [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.74     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 13.04     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.04     [javac] import loci.formats.codec.BitWriter;
#16 13.04     [javac]                          ^
#16 13.04     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.04     [javac] import loci.formats.codec.BitWriter;
#16 13.04     [javac]                          ^
#16 15.04     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.04     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.04     [javac]                                          ^
#16 15.04     [javac]   cast to Object for a varargs call
#16 15.04     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 15.04     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.04     [javac]     BitWriter bits = null;
#16 15.04     [javac]     ^
#16 15.04     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.04     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 15.04     [javac]                  ^
#16 15.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.34     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.34     [javac]                                                    ^
#16 15.75     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.75     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.75     [javac]     ^
#16 15.75     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.75     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.75     [javac]                          ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:169: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.05     [javac]     Variable variable = group.findVariable(variableName);
#16 16.05     [javac]                              ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:196: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.05     [javac]     Variable variable = group.findVariable(variableName);
#16 16.05     [javac]                              ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.05     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 16.05     [javac]                                            ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.05     [javac]       String groupName = group.getName();
#16 16.05     [javac]                               ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.05     [javac]       List<Attribute> attributes = group.getAttributes();
#16 16.05     [javac]                                         ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.05     [javac]         String variableName = variable.getName();
#16 16.05     [javac]                                       ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:269: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 16.05     [javac]       Group nextParent = parent.findGroup(token);
#16 16.05     [javac]                                ^
#16 16.05     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.05     [javac]     netCDFFile = NetcdfFile.open(currentId);
#16 16.05     [javac]                            ^
#16 16.05     [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.05     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.05     [javac] 17 warnings
#16 16.05 
#16 16.05 formats-gpl.jar:
#16 16.05       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.19 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 16.19 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 16.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 16.20 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.20 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.20 
#16 16.20 deps-bio-formats-plugins:
#16 16.20 
#16 16.20 jar-bio-formats-plugins:
#16 16.29      [echo] isSnapshot = true
#16 16.43 
#16 16.43 init-title:
#16 16.43      [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.43 
#16 16.43 init-timestamp:
#16 16.43 
#16 16.43 init:
#16 16.43 
#16 16.43 copy-resources:
#16 16.43     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.43      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.43 
#16 16.43 compile:
#16 16.68 [resolver:resolve] Resolving artifacts
#16 16.70     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.90     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.70     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.70     [javac] import loci.common.ReflectedUniverse;
#16 17.70     [javac]                   ^
#16 17.70     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.70     [javac] import loci.common.ReflectedUniverse;
#16 17.70     [javac]                   ^
#16 18.20     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.20     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.20     [javac]                                      ^
#16 18.30     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.30     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 18.30     [javac]         ^
#16 18.30     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.30     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 18.30     [javac]                                   ^
#16 18.40     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.40     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 18.40     [javac]     ^
#16 18.40     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.40     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 18.40     [javac]                                ^
#16 18.80     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.80     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.80     [javac] 8 warnings
#16 18.81 
#16 18.81 bio-formats-plugins.jar:
#16 18.82       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.84 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 18.85 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 18.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 18.87 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.87 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.87 
#16 18.87 deps-bio-formats-tools:
#16 18.87 
#16 18.87 jar-bio-formats-tools:
#16 18.97      [echo] isSnapshot = true
#16 19.10 
#16 19.10 init-title:
#16 19.10      [echo] ----------=========== bio-formats-tools ===========----------
#16 19.10 
#16 19.10 init-timestamp:
#16 19.10 
#16 19.10 init:
#16 19.10 
#16 19.10 copy-resources:
#16 19.10     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.10 
#16 19.10 compile:
#16 19.33 [resolver:resolve] Resolving artifacts
#16 19.34     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.54     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.58     [javac] 1 warning
#16 20.58 
#16 20.58 bio-formats-tools.jar:
#16 20.59       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.59 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 20.60 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 20.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 20.60 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 20.60 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.60 
#16 20.60 deps-tests:
#16 20.60 
#16 20.60 jar-tests:
#16 20.68      [echo] isSnapshot = true
#16 20.81 
#16 20.81 init-title:
#16 20.81      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.81 
#16 20.81 init-timestamp:
#16 20.81 
#16 20.81 init:
#16 20.81 
#16 20.81 copy-resources:
#16 20.81     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.81 
#16 20.81 compile:
#16 21.09 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.16 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.18 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.59 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.00 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.03 [resolver:resolve] Resolving artifacts
#16 22.04 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.08 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.09 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.49 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.86 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.86     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.07     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.07     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.07     [javac]         int index = unflattenedReader.getCoreIndex();
#16 24.07     [javac]                                      ^
#16 24.07     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.07     [javac]         reader.setCoreIndex(index);
#16 24.07     [javac]               ^
#16 24.27     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.27     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 24.27     [javac]                                              ^
#16 24.27     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.27     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 24.27     [javac]                                              ^
#16 24.57     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.57     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.57     [javac]                                                    ^
#16 24.57     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.57     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.57     [javac]                                                    ^
#16 24.57     [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.57     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.57     [javac] 7 warnings
#16 24.62 
#16 24.62 tests.jar:
#16 24.62       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.64 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 24.64 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 24.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 24.64 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.65 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.65 
#16 24.65 jars:
#16 24.65 
#16 24.65 copy-jars:
#16 24.65 
#16 24.65 deps-formats-api:
#16 24.69      [echo] isSnapshot = true
#16 24.73 
#16 24.73 install-pom:
#16 24.86 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 24.87 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.90 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.91 
#16 24.91 jar-formats-api:
#16 24.98      [echo] isSnapshot = true
#16 25.11 
#16 25.11 init-title:
#16 25.11      [echo] ----------=========== formats-api ===========----------
#16 25.11 
#16 25.11 init-timestamp:
#16 25.11 
#16 25.11 init:
#16 25.11 
#16 25.11 copy-resources:
#16 25.11 
#16 25.11 compile:
#16 25.24 [resolver:resolve] Resolving artifacts
#16 25.24 
#16 25.24 formats-api.jar:
#16 25.26 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 25.26 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 25.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 25.27 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.27 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.27 
#16 25.27 deps-turbojpeg:
#16 25.27 
#16 25.27 jar-turbojpeg:
#16 25.35      [echo] isSnapshot = true
#16 25.47 
#16 25.47 init-title:
#16 25.47      [echo] ----------=========== turbojpeg ===========----------
#16 25.47 
#16 25.47 init-timestamp:
#16 25.47 
#16 25.47 init:
#16 25.47 
#16 25.47 copy-resources:
#16 25.47 
#16 25.47 compile:
#16 25.48 [resolver:resolve] Resolving artifacts
#16 25.48 
#16 25.48 jar:
#16 25.48 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 25.49 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 25.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 25.49 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.49 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.50 
#16 25.50 deps-formats-bsd:
#16 25.50 
#16 25.50 jar-formats-bsd:
#16 25.57      [echo] isSnapshot = true
#16 25.69 
#16 25.69 init-title:
#16 25.69      [echo] ----------=========== formats-bsd ===========----------
#16 25.69 
#16 25.69 init-timestamp:
#16 25.69 
#16 25.69 init:
#16 25.69 
#16 25.69 copy-resources:
#16 25.70 
#16 25.70 compile:
#16 25.89 [resolver:resolve] Resolving artifacts
#16 25.91 
#16 25.91 formats-bsd.jar:
#16 25.94 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 25.94 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 25.94 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 25.94 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.95 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 25.95 
#16 25.95 deps-formats-gpl:
#16 25.95 
#16 25.95 jar-formats-gpl:
#16 26.02      [echo] isSnapshot = true
#16 26.15 
#16 26.15 init-title:
#16 26.15      [echo] ----------=========== formats-gpl ===========----------
#16 26.15 
#16 26.15 init-timestamp:
#16 26.15 
#16 26.15 init:
#16 26.15 
#16 26.15 copy-resources:
#16 26.15 
#16 26.15 compile:
#16 26.36 [resolver:resolve] Resolving artifacts
#16 26.37 
#16 26.37 formats-gpl.jar:
#16 26.40 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 26.41 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 26.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 26.41 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.41 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.41 
#16 26.41 deps-bio-formats-plugins:
#16 26.41 
#16 26.41 jar-bio-formats-plugins:
#16 26.57      [echo] isSnapshot = true
#16 26.70 
#16 26.70 init-title:
#16 26.70      [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.70 
#16 26.70 init-timestamp:
#16 26.70 
#16 26.70 init:
#16 26.70 
#16 26.70 copy-resources:
#16 26.70 
#16 26.70 compile:
#16 26.94 [resolver:resolve] Resolving artifacts
#16 26.96 
#16 26.96 bio-formats-plugins.jar:
#16 26.97 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 26.97 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 26.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 26.98 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.98 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 26.98 
#16 26.98 deps-bio-formats-tools:
#16 26.98 
#16 26.98 jar-bio-formats-tools:
#16 27.06      [echo] isSnapshot = true
#16 27.18 
#16 27.18 init-title:
#16 27.18      [echo] ----------=========== bio-formats-tools ===========----------
#16 27.18 
#16 27.18 init-timestamp:
#16 27.18 
#16 27.18 init:
#16 27.18 
#16 27.18 copy-resources:
#16 27.18 
#16 27.18 compile:
#16 27.40 [resolver:resolve] Resolving artifacts
#16 27.41 
#16 27.41 bio-formats-tools.jar:
#16 27.41 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 27.42 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 27.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 27.42 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.42 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.42 
#16 27.42 deps-tests:
#16 27.42 
#16 27.42 jar-tests:
#16 27.50      [echo] isSnapshot = true
#16 27.64 
#16 27.64 init-title:
#16 27.64      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.64 
#16 27.64 init-timestamp:
#16 27.64 
#16 27.64 init:
#16 27.64 
#16 27.64 copy-resources:
#16 27.64 
#16 27.64 compile:
#16 27.88 [resolver:resolve] Resolving artifacts
#16 27.89 
#16 27.89 tests.jar:
#16 27.90 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 27.90 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 27.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 27.90 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.91 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.91 
#16 27.91 jars:
#16 27.91 
#16 27.91 tools:
#16 27.91      [echo] ----------=========== bioformats_package ===========----------
#16 27.99      [echo] isSnapshot = true
#16 28.11 
#16 28.11 init-timestamp:
#16 28.11 
#16 28.11 bundle:
#16 28.33 [resolver:resolve] Resolving artifacts
#16 28.34     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.37     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.39     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.42     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.42     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.49     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.51     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.56     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.57     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.84     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.89     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.91     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.97     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.98     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.99     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.99     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.17     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.68     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.69     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.79     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.87     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.96     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.97     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.97     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.09     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.11     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.12     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.26     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.30     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.37     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.45     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.92     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.94     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.97     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.17     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.20     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.43     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.51     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.56     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.66     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.86     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.87     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.36     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.38     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.56     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.57     [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.63     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.79     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.81     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.81     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.86     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.26     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.37     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.70       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.12    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.64 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 39.64 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 39.74 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 39.77 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 39.77 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.78 
#16 39.78 BUILD SUCCESSFUL
#16 39.78 Total time: 39 seconds
#16 DONE 43.0s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.2s

#18 exporting to image
#18 exporting layers
#18 exporting layers 3.8s done
#18 writing image sha256:437612a05b28f9342564994dffb75326598ee47b890ac75745225b07fa94f898 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.9s

 1 warning found (use docker --debug to expand):
 - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS