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Started by upstream project "Trigger" build number 147
originally caused by:
 Started by user devspace
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-python-superbuild-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-python-superbuild-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
 > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-python-superbuild-push/.git # timeout=10
 > git config remote.origin.url https://github.com/ome/omero-python-superbuild.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-python-superbuild.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- https://github.com/ome/omero-python-superbuild.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 508496fba006c24030e94a686761108e34ba8f70 (refs/remotes/origin/master)
Commit message: "Merge pull request #288 from ome/dependabot/submodules/omero-web-ba8c7e2"
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 508496fba006c24030e94a686761108e34ba8f70 # timeout=10
 > git rev-list --no-walk cc9eff3c325328a7ee46857e572be7124cd0358c # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
 > git submodule foreach --recursive git reset --hard # timeout=10
 > git submodule foreach --recursive git clean -fdx # timeout=10
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 128
[Pipeline] sh
+ pushd build
~/workspace/OMERO-python-superbuild-push/build ~/workspace/OMERO-python-superbuild-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.omero-py.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-py.path # timeout=10
 > git config --get submodule.omero-web.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-web.path # timeout=10
 > git config --get submodule.omero-marshal.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-marshal.path # timeout=10
 > git config --get submodule.omero-dropbox.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-dropbox.path # timeout=10
 > git config --get submodule.omero-scripts.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-scripts.path # timeout=10
 > git submodule update --init --recursive omero-py # timeout=10
 > git submodule update --init --recursive omero-web # timeout=10
 > git submodule update --init --recursive omero-marshal # timeout=10
 > git submodule update --init --recursive omero-dropbox # timeout=10
 > git submodule update --init --recursive omero-scripts # timeout=10
+ popd
~/workspace/OMERO-python-superbuild-push
+ python3 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.1.2-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-24.1.2
+ python3 -m pip install scc
Collecting scc
  Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
  Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
Collecting PyYAML>=5.1 (from scc)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
  Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
  Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
  Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting urllib3<2 (from scc)
  Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
  Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
  Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
  Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
  Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
  Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
  Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached cryptography-43.0.0-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.4 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
  Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.32.3-py3-none-any.whl (64 kB)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached cryptography-43.0.0-cp39-abi3-manylinux_2_28_x86_64.whl (4.0 MB)
Using cached idna-3.7-py3-none-any.whl (66 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.7.4 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-43.0.0 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-python-superbuild.git
+ BASE_REPO=omero-python-superbuild.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-07-23 10:25:36,895 [  scc.config] DEBUG Found github.token
2024-07-23 10:25:36,898 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-07-23 10:25:37,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:25:37,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:25:37,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-07-23 10:25:37,941 [      scc.gh] DEBUG 4340 remaining from 5000 (Reset at 10:07
2024-07-23 10:25:37,942 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-23 10:25:37,945 [     scc.git] DEBUG Check current status
2024-07-23 10:25:37,946 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:37,949 [     scc.git] DEBUG 508496f Merge pull request #288 from ome/dependabot/submodules/omero-web-ba8c7e2
2024-07-23 10:25:37,949 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:37,989 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-23 10:25:37,992 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-23 10:25:37,996 [     scc.git] DEBUG  749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-07-23 10:25:37,999 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-23 10:25:38,141 [     scc.git] DEBUG  ba8c7e23c5d3343992812b7579e8d2cf30eb5374 omero-web (v5.26.0-28-gba8c7e23c)
2024-07-23 10:25:38,145 [  scc.config] DEBUG Found remote.origin.url
2024-07-23 10:25:38,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-07-23 10:25:38,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-23 10:25:39,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-23 10:25:39,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-23 10:25:40,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-23 10:25:40,172 [     scc.git] DEBUG Resetting...
2024-07-23 10:25:40,172 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-07-23 10:25:40,178 [     scc.git] DEBUG HEAD is now at 508496f Merge pull request #288 from ome/dependabot/submodules/omero-web-ba8c7e2
2024-07-23 10:25:40,178 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-07-23 10:25:40,229 [     scc.git] DEBUG Check current status
2024-07-23 10:25:40,230 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:40,233 [     scc.git] DEBUG 508496f Merge pull request #288 from ome/dependabot/submodules/omero-web-ba8c7e2
2024-07-23 10:25:40,233 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:40,273 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-23 10:25:40,276 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-23 10:25:40,279 [     scc.git] DEBUG  749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-07-23 10:25:40,283 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-23 10:25:40,287 [     scc.git] DEBUG  ba8c7e23c5d3343992812b7579e8d2cf30eb5374 omero-web (v5.26.0-28-gba8c7e23c)
2024-07-23 10:25:40,288 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-07-23 10:25:40,288 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-07-23 10:25:40,288 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-07-23 10:25:40,288 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-07-23 10:25:40,288 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-07-23 10:25:40,288 [    scc.repo] DEBUG ## PRs found:
2024-07-23 10:25:40,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2
2024-07-23 10:25:40,600 [    scc.repo] DEBUG ## Branches found:
2024-07-23 10:25:40,600 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:25:40,600 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:25:40,604 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-23 10:25:40,608 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-23 10:25:40,608 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-23 10:25:40,611 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-23 10:25:40,615 [     scc.git] DEBUG Already up to date.

2024-07-23 10:25:40,616 [     scc.git] DEBUG ## Unique users: []
2024-07-23 10:25:40,616 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:25:40,616 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:25:40,619 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-23 10:25:40,661 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:25:40,662 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:25:40,665 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-23 10:25:40,769 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f636ac7b8e0> has no local changes
2024-07-23 10:25:40,769 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-python-superbuild
Already up to date.


Generated by OMERO-python-superbuild-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/)'
2024-07-23 10:25:40,795 [     scc.git] DEBUG [detached HEAD 0a51eb1] merge master -Dorg -Snone
2024-07-23 10:25:40,795 [   scc.merge] INFO  Repository: ome/omero-python-superbuild
2024-07-23 10:25:40,795 [   scc.merge] INFO  Already up to date.
2024-07-23 10:25:40,795 [   scc.merge] INFO  
2024-07-23 10:25:40,795 [   scc.merge] INFO  
2024-07-23 10:25:40,795 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-07-23 10:25:40,795 [     scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'omero-dropbox'
Synchronizing submodule url for 'omero-marshal'
Synchronizing submodule url for 'omero-py'
Synchronizing submodule url for 'omero-scripts'
Synchronizing submodule url for 'omero-web'
Merge all submodules using repository configuration:
base-branch: master

submodules:
  omero-scripts:
    base-branch: develop
2024-07-23 10:25:43,495 [  scc.config] DEBUG Found github.token
2024-07-23 10:25:43,498 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-07-23 10:25:43,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:25:44,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:25:44,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-07-23 10:25:44,544 [      scc.gh] DEBUG 4332 remaining from 5000 (Reset at 10:07
2024-07-23 10:25:44,545 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-23 10:25:44,549 [     scc.git] DEBUG Check current status
2024-07-23 10:25:44,549 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:44,553 [     scc.git] DEBUG 0a51eb1 merge master -Dorg -Snone
2024-07-23 10:25:44,553 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:44,594 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-23 10:25:44,597 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-23 10:25:44,600 [     scc.git] DEBUG  749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-07-23 10:25:44,604 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-23 10:25:44,608 [     scc.git] DEBUG  ba8c7e23c5d3343992812b7579e8d2cf30eb5374 omero-web (v5.26.0-28-gba8c7e23c)
2024-07-23 10:25:44,612 [  scc.config] DEBUG Found remote.origin.url
2024-07-23 10:25:44,613 [     scc.git] DEBUG Reading repository configuration from repositories.yml
2024-07-23 10:25:44,614 [     scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
  omero-scripts:
    base-branch: develop

2024-07-23 10:25:45,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-07-23 10:25:45,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-23 10:25:45,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-23 10:25:46,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-23 10:25:46,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-23 10:25:46,798 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:25:46,845 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-07-23 10:25:46,846 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-23 10:25:46,849 [     scc.git] DEBUG Check current status
2024-07-23 10:25:46,849 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:46,853 [     scc.git] DEBUG a4307f4 Bump version: 5.7.0 → 5.7.1.dev0
2024-07-23 10:25:46,853 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:46,897 [  scc.config] DEBUG Found remote.origin.url
2024-07-23 10:25:47,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None
2024-07-23 10:25:47,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-23 10:25:48,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-23 10:25:48,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-23 10:25:49,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-23 10:25:49,078 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:25:49,117 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:25:49,118 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-07-23 10:25:49,118 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-23 10:25:49,121 [     scc.git] DEBUG Check current status
2024-07-23 10:25:49,122 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:49,125 [     scc.git] DEBUG cca4c2f Merge pull request #80 from sbesson/python312
2024-07-23 10:25:49,126 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:49,167 [  scc.config] DEBUG Found remote.origin.url
2024-07-23 10:25:49,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None
2024-07-23 10:25:50,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-23 10:25:50,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-23 10:25:50,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-23 10:25:51,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-23 10:25:51,336 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:25:51,377 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:25:51,378 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-07-23 10:25:51,378 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-23 10:25:51,382 [     scc.git] DEBUG Check current status
2024-07-23 10:25:51,382 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:51,386 [     scc.git] DEBUG 749a68ac Bump version: 5.19.4 → 5.19.5.dev0
2024-07-23 10:25:51,386 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:51,430 [  scc.config] DEBUG Found remote.origin.url
2024-07-23 10:25:51,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None
2024-07-23 10:25:52,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-23 10:25:52,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-23 10:25:53,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-23 10:25:53,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-23 10:25:53,623 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:25:53,663 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:25:53,664 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-07-23 10:25:53,664 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-23 10:25:53,668 [     scc.git] DEBUG Check current status
2024-07-23 10:25:53,668 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:53,672 [     scc.git] DEBUG c20d273 Merge pull request #221 from imcf/fix-typechecking
2024-07-23 10:25:53,672 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:53,714 [  scc.config] DEBUG Found remote.origin.url
2024-07-23 10:25:53,715 [     scc.git] DEBUG Repository configuration:
base-branch: develop

2024-07-23 10:25:54,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None
2024-07-23 10:25:54,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-23 10:25:55,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-23 10:25:55,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-23 10:25:55,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-23 10:25:55,923 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:25:55,963 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:25:55,964 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-07-23 10:25:55,964 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-23 10:25:55,969 [     scc.git] DEBUG Check current status
2024-07-23 10:25:55,969 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:55,973 [     scc.git] DEBUG ba8c7e23c Merge pull request #563 from chris-allan/batch-by-max-download-rows
2024-07-23 10:25:55,973 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:56,019 [  scc.config] DEBUG Found remote.origin.url
2024-07-23 10:25:56,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None
2024-07-23 10:25:56,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-23 10:25:57,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-23 10:25:57,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-23 10:25:58,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-23 10:25:58,291 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:25:58,339 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:25:58,340 [     scc.git] DEBUG Resetting...
2024-07-23 10:25:58,340 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-07-23 10:25:58,348 [     scc.git] DEBUG HEAD is now at 0a51eb1 merge master -Dorg -Snone
2024-07-23 10:25:58,348 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-07-23 10:25:58,415 [     scc.git] DEBUG Check current status
2024-07-23 10:25:58,415 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-23 10:25:58,419 [     scc.git] DEBUG 0a51eb1 merge master -Dorg -Snone
2024-07-23 10:25:58,419 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-23 10:25:58,460 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-23 10:25:58,463 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-23 10:25:58,466 [     scc.git] DEBUG  749a68acfc7b1851c165ae75f2c118743d8b1e0d omero-py (v5.19.4-1-g749a68ac)
2024-07-23 10:25:58,470 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-23 10:25:58,475 [     scc.git] DEBUG  ba8c7e23c5d3343992812b7579e8d2cf30eb5374 omero-web (v5.26.0-28-gba8c7e23c)
2024-07-23 10:25:58,476 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-07-23 10:25:58,476 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-07-23 10:25:58,476 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-07-23 10:25:58,476 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-07-23 10:25:58,476 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-07-23 10:25:58,476 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-07-23 10:25:58,476 [    scc.repo] DEBUG ## PRs found:
2024-07-23 10:25:58,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2
2024-07-23 10:25:58,727 [    scc.repo] DEBUG ## Branches found:
2024-07-23 10:25:58,728 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:25:58,728 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:25:58,732 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-23 10:25:58,735 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-23 10:25:58,736 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-23 10:25:58,739 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-23 10:25:58,743 [     scc.git] DEBUG Already up to date.

2024-07-23 10:25:58,743 [     scc.git] DEBUG ## Unique users: []
2024-07-23 10:25:58,744 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:25:58,744 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:25:58,747 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-23 10:25:58,786 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:25:58,786 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:25:58,791 [    scc.repo] DEBUG ## PRs found:
2024-07-23 10:25:59,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None
2024-07-23 10:25:59,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None
2024-07-23 10:26:00,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None
2024-07-23 10:26:00,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-07-23 10:26:01,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:01,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-07-23 10:26:02,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:02,151 [    scc.repo] DEBUG   - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-07-23 10:26:02,152 [    scc.repo] DEBUG ## Branches found:
2024-07-23 10:26:02,152 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-07-23 10:26:02,152 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:02,152 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:02,156 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-23 10:26:02,160 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-23 10:26:02,160 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-23 10:26:02,165 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-23 10:26:02,171 [     scc.git] DEBUG Already up to date.

2024-07-23 10:26:02,171 [     scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2024-07-23 10:26:02,545 [     scc.git] DEBUG From https://github.com/ome/omero-dropbox
2024-07-23 10:26:02,545 [     scc.git] DEBUG  * branch            refs/pull/16/head -> FETCH_HEAD
2024-07-23 10:26:02,549 [     scc.git] DEBUG ## Unique users: []
2024-07-23 10:26:02,549 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:02,550 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:02,555 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-07-23 10:26:02,561 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:02,568 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-07-23 10:26:02,735 [     scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py
2024-07-23 10:26:02,735 [     scc.git] DEBUG Auto-merging src/fsDirectory.py
2024-07-23 10:26:02,735 [     scc.git] DEBUG Auto-merging src/fsDropBox.py
2024-07-23 10:26:02,735 [     scc.git] DEBUG Auto-merging src/fsLists.py
2024-07-23 10:26:02,735 [     scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py
2024-07-23 10:26:02,736 [     scc.git] DEBUG Auto-merging src/fsMonitor.py
2024-07-23 10:26:02,736 [     scc.git] DEBUG Auto-merging src/fsMonitorServer.py
2024-07-23 10:26:02,736 [     scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py
2024-07-23 10:26:02,736 [     scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py
2024-07-23 10:26:02,736 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsAbstractPlatformMonitor.py |  6 +++---
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsDirectory.py               | 46 ++++++++++++++++++++--------------------
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsDropBox.py                 | 24 ++++++++++-----------
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsLists.py                   | 14 ++++++------
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsMac-10-5-Monitor.py        | 10 ++++-----
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsMonitor.py                 | 24 ++++++++++-----------
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsMonitorServer.py           | 10 ++++-----
2024-07-23 10:26:02,741 [     scc.git] DEBUG  src/fsPyinotifyMonitor.py        |  8 +++----
2024-07-23 10:26:02,743 [     scc.git] DEBUG  src/fsWin-XP-Monitor.py          | 20 ++++++++---------
2024-07-23 10:26:02,743 [     scc.git] DEBUG  9 files changed, 81 insertions(+), 81 deletions(-)
2024-07-23 10:26:02,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:02,909 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-23 10:26:02,946 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:02,946 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:02,950 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:26:02,985 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-23 10:26:02,990 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3f4635eb0> has no local changes
2024-07-23 10:26:02,991 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-dropbox
Already up to date.

Merged PRs:
  - PR 16 joshmoore 'Review all instances of whitelist/blacklist'

Generated by OMERO-python-superbuild-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/)'
2024-07-23 10:26:02,998 [     scc.git] DEBUG [detached HEAD 05ad0dc] merge master -Dorg -Ssuccess-only
2024-07-23 10:26:02,998 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:26:02,998 [    scc.repo] DEBUG ## PRs found:
2024-07-23 10:26:03,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None
2024-07-23 10:26:03,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None
2024-07-23 10:26:04,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None
2024-07-23 10:26:05,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-07-23 10:26:05,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:06,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-07-23 10:26:06,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:06,466 [    scc.repo] DEBUG   - PR 69 will-moore 'Roi encoder allows Shape None'
2024-07-23 10:26:06,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None
2024-07-23 10:26:07,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None
2024-07-23 10:26:07,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None
2024-07-23 10:26:08,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None
2024-07-23 10:26:08,402 [    scc.repo] DEBUG ## Branches found:
2024-07-23 10:26:08,402 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-07-23 10:26:08,402 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:08,402 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:08,406 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-23 10:26:08,410 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-23 10:26:08,410 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-23 10:26:08,414 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-23 10:26:08,419 [     scc.git] DEBUG Already up to date.

2024-07-23 10:26:08,419 [     scc.git] DEBUG Calling 'git fetch origin pull/69/head'
2024-07-23 10:26:08,819 [     scc.git] DEBUG From https://github.com/ome/omero-marshal
2024-07-23 10:26:08,820 [     scc.git] DEBUG  * branch            refs/pull/69/head -> FETCH_HEAD
2024-07-23 10:26:08,824 [     scc.git] DEBUG ## Unique users: []
2024-07-23 10:26:08,825 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:08,825 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:08,829 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-07-23 10:26:08,835 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:08,839 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-07-23 10:26:08,850 [     scc.git] DEBUG Auto-merging tests/unit/conftest.py
2024-07-23 10:26:08,850 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:08,854 [     scc.git] DEBUG  omero_marshal/encode/encoders/roi.py | 5 +++--
2024-07-23 10:26:08,854 [     scc.git] DEBUG  tests/unit/conftest.py               | 5 ++++-
2024-07-23 10:26:08,854 [     scc.git] DEBUG  2 files changed, 7 insertions(+), 3 deletions(-)
2024-07-23 10:26:09,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:09,031 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-23 10:26:09,073 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:09,073 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:09,077 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:26:09,117 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-23 10:26:09,125 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3f350f460> has no local changes
2024-07-23 10:26:09,125 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-marshal
Excluded PRs:
  - PR 34 chris-allan 'Initial support for Event' (exclude comment)
  - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.

Merged PRs:
  - PR 69 will-moore 'Roi encoder allows Shape None'

Generated by OMERO-python-superbuild-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/)'
2024-07-23 10:26:09,134 [     scc.git] DEBUG [detached HEAD 709da53] merge master -Dorg -Ssuccess-only
2024-07-23 10:26:09,135 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:26:09,135 [    scc.repo] DEBUG ## PRs found:
2024-07-23 10:26:09,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None
2024-07-23 10:26:10,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None
2024-07-23 10:26:10,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None
2024-07-23 10:26:11,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-07-23 10:26:11,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:12,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:26:12,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-07-23 10:26:13,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:13,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-07-23 10:26:14,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/status HTTP/1.1" 200 None
2024-07-23 10:26:14,093 [    scc.repo] DEBUG   - PR 408 jburel 'remove deprecated method'
2024-07-23 10:26:14,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None
2024-07-23 10:26:15,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None
2024-07-23 10:26:15,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None
2024-07-23 10:26:16,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:16,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:26:17,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None
2024-07-23 10:26:17,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-07-23 10:26:18,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:18,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:26:19,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-07-23 10:26:19,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:20,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-07-23 10:26:20,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/status HTTP/1.1" 200 None
2024-07-23 10:26:20,475 [    scc.repo] DEBUG   - PR 391 joshmoore 'Add jstack command'
2024-07-23 10:26:20,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/387 HTTP/1.1" 200 None
2024-07-23 10:26:20,952 [    scc.repo] DEBUG   # ... Exclude label: exclude
2024-07-23 10:26:21,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337 HTTP/1.1" 200 None
2024-07-23 10:26:21,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337/comments HTTP/1.1" 200 None
2024-07-23 10:26:22,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-07-23 10:26:22,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:23,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-07-23 10:26:23,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/0df9ec8000befec36dd85b7ff078ce66603e36a5?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:23,861 [    scc.repo] DEBUG   - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-07-23 10:26:24,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None
2024-07-23 10:26:24,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None
2024-07-23 10:26:25,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-07-23 10:26:25,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:26,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:26:26,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-07-23 10:26:27,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:27,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-07-23 10:26:28,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/status HTTP/1.1" 200 None
2024-07-23 10:26:28,237 [    scc.repo] DEBUG   - PR 332 jburel 'Build conda'
2024-07-23 10:26:28,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325 HTTP/1.1" 200 None
2024-07-23 10:26:29,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325/comments HTTP/1.1" 200 None
2024-07-23 10:26:29,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None
2024-07-23 10:26:30,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None
2024-07-23 10:26:30,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-07-23 10:26:31,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:31,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-07-23 10:26:32,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/09ae8033d77faf0346255eb9644207e02c98709a?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:32,192 [    scc.repo] DEBUG   - PR 299 joshmoore 'Add parents and children to omero obj'
2024-07-23 10:26:32,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/266 HTTP/1.1" 200 None
2024-07-23 10:26:33,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-07-23 10:26:33,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:34,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-07-23 10:26:34,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/df250605e81b3b5f509b4cddc3186a63d7ba364f?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:34,566 [    scc.repo] DEBUG   - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-07-23 10:26:35,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207 HTTP/1.1" 200 None
2024-07-23 10:26:35,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207/comments HTTP/1.1" 200 None
2024-07-23 10:26:36,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-07-23 10:26:36,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:37,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-07-23 10:26:37,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d68e639b52d3b583d12c65164f3edcd0b813a4bb?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:37,613 [    scc.repo] DEBUG   - PR 207 manics 'BlitzGateway.connect raise on error'
2024-07-23 10:26:38,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None
2024-07-23 10:26:38,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None
2024-07-23 10:26:39,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-07-23 10:26:39,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:40,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-07-23 10:26:40,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:40,550 [    scc.repo] DEBUG   - PR 199 joshmoore 'user: allow setting default group'
2024-07-23 10:26:41,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194 HTTP/1.1" 200 None
2024-07-23 10:26:41,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194/comments HTTP/1.1" 200 None
2024-07-23 10:26:41,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129 HTTP/1.1" 200 None
2024-07-23 10:26:42,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129/comments HTTP/1.1" 200 None
2024-07-23 10:26:42,519 [    scc.repo] DEBUG ## Branches found:
2024-07-23 10:26:42,519 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-07-23 10:26:42,519 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:42,519 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:42,524 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-23 10:26:42,529 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-23 10:26:42,529 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-23 10:26:42,534 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-23 10:26:42,539 [     scc.git] DEBUG Already up to date.

2024-07-23 10:26:42,539 [     scc.git] DEBUG Calling 'git fetch origin pull/199/head'
2024-07-23 10:26:43,279 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:43,279 [     scc.git] DEBUG  * branch              refs/pull/199/head -> FETCH_HEAD
2024-07-23 10:26:43,284 [     scc.git] DEBUG Calling 'git fetch origin pull/207/head'
2024-07-23 10:26:43,640 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:43,641 [     scc.git] DEBUG  * branch              refs/pull/207/head -> FETCH_HEAD
2024-07-23 10:26:43,646 [     scc.git] DEBUG Calling 'git fetch origin pull/266/head'
2024-07-23 10:26:44,002 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:44,003 [     scc.git] DEBUG  * branch              refs/pull/266/head -> FETCH_HEAD
2024-07-23 10:26:44,007 [     scc.git] DEBUG Calling 'git fetch origin pull/299/head'
2024-07-23 10:26:44,400 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:44,401 [     scc.git] DEBUG  * branch              refs/pull/299/head -> FETCH_HEAD
2024-07-23 10:26:44,406 [     scc.git] DEBUG Calling 'git fetch origin pull/332/head'
2024-07-23 10:26:45,014 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:45,014 [     scc.git] DEBUG  * branch              refs/pull/332/head -> FETCH_HEAD
2024-07-23 10:26:45,022 [     scc.git] DEBUG Calling 'git fetch origin pull/337/head'
2024-07-23 10:26:45,361 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:45,361 [     scc.git] DEBUG  * branch              refs/pull/337/head -> FETCH_HEAD
2024-07-23 10:26:45,365 [     scc.git] DEBUG Calling 'git fetch origin pull/391/head'
2024-07-23 10:26:45,710 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:45,710 [     scc.git] DEBUG  * branch              refs/pull/391/head -> FETCH_HEAD
2024-07-23 10:26:45,715 [     scc.git] DEBUG Calling 'git fetch origin pull/408/head'
2024-07-23 10:26:46,109 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-23 10:26:46,109 [     scc.git] DEBUG  * branch              refs/pull/408/head -> FETCH_HEAD
2024-07-23 10:26:46,113 [     scc.git] DEBUG ## Unique users: []
2024-07-23 10:26:46,113 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:46,113 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:46,117 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-07-23 10:26:46,127 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:46,131 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-07-23 10:26:46,192 [     scc.git] DEBUG Auto-merging src/omero/cli.py
2024-07-23 10:26:46,192 [     scc.git] DEBUG Auto-merging src/omero/plugins/user.py
2024-07-23 10:26:46,194 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:46,198 [     scc.git] DEBUG  src/omero/cli.py          |  6 ++++++
2024-07-23 10:26:46,198 [     scc.git] DEBUG  src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++---
2024-07-23 10:26:46,198 [     scc.git] DEBUG  2 files changed, 39 insertions(+), 3 deletions(-)
2024-07-23 10:26:46,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:46,384 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-07-23 10:26:46,396 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:46,400 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 207 (BlitzGateway.connect raise on error) d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-07-23 10:26:46,509 [     scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-07-23 10:26:46,509 [     scc.git] DEBUG Auto-merging test/unit/test_gateway.py
2024-07-23 10:26:46,510 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:46,517 [     scc.git] DEBUG  src/omero/gateway/__init__.py | 19 +++++++++++++------
2024-07-23 10:26:46,517 [     scc.git] DEBUG  test/unit/test_gateway.py     | 16 ++++++++++++++++
2024-07-23 10:26:46,517 [     scc.git] DEBUG  2 files changed, 29 insertions(+), 6 deletions(-)
2024-07-23 10:26:46,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:46,794 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-07-23 10:26:46,805 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:46,811 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 266 (errors: use raise_error from cli plugins) df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-07-23 10:26:46,883 [     scc.git] DEBUG Auto-merging src/omero/plugins/search.py
2024-07-23 10:26:46,884 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:46,887 [     scc.git] DEBUG  src/omero/plugins/search.py | 13 +++++++++----
2024-07-23 10:26:46,887 [     scc.git] DEBUG  1 file changed, 9 insertions(+), 4 deletions(-)
2024-07-23 10:26:47,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:47,208 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...09ae8033d77faf0346255eb9644207e02c98709a'
2024-07-23 10:26:47,221 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:47,227 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 299 (Add parents and children to omero obj) 09ae8033d77faf0346255eb9644207e02c98709a'
2024-07-23 10:26:47,294 [     scc.git] DEBUG Auto-merging src/omero/plugins/obj.py
2024-07-23 10:26:47,294 [     scc.git] DEBUG Auto-merging test/unit/clitest/test_obj.py
2024-07-23 10:26:47,295 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:47,299 [     scc.git] DEBUG  src/omero/plugins/obj.py      | 69 ++++++++++++++++++++++++++++++++++++++++++-
2024-07-23 10:26:47,299 [     scc.git] DEBUG  test/unit/clitest/test_obj.py |  2 +-
2024-07-23 10:26:47,299 [     scc.git] DEBUG  2 files changed, 69 insertions(+), 2 deletions(-)
2024-07-23 10:26:47,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:47,630 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-07-23 10:26:47,641 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:47,645 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-07-23 10:26:47,682 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:47,685 [     scc.git] DEBUG  .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++
2024-07-23 10:26:47,685 [     scc.git] DEBUG  connect.py                    | 11 +++++++++++
2024-07-23 10:26:47,685 [     scc.git] DEBUG  2 files changed, 48 insertions(+)
2024-07-23 10:26:47,685 [     scc.git] DEBUG  create mode 100644 .github/workflows/install.yml
2024-07-23 10:26:47,685 [     scc.git] DEBUG  create mode 100644 connect.py
2024-07-23 10:26:48,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:48,051 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-07-23 10:26:48,063 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:48,067 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 337 (bulk.yml depth is passed to xargs) 0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-07-23 10:26:48,122 [     scc.git] DEBUG Auto-merging src/omero/plugins/import.py
2024-07-23 10:26:48,123 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:48,126 [     scc.git] DEBUG  src/omero/plugins/import.py | 2 ++
2024-07-23 10:26:48,126 [     scc.git] DEBUG  1 file changed, 2 insertions(+)
2024-07-23 10:26:48,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:48,471 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023'
2024-07-23 10:26:48,482 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:48,486 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023'
2024-07-23 10:26:48,565 [     scc.git] DEBUG Auto-merging src/omero/plugins/admin.py
2024-07-23 10:26:48,566 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:48,570 [     scc.git] DEBUG  src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++--
2024-07-23 10:26:48,570 [     scc.git] DEBUG  1 file changed, 59 insertions(+), 2 deletions(-)
2024-07-23 10:26:48,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:48,884 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-07-23 10:26:48,896 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:48,901 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-07-23 10:26:48,950 [     scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-07-23 10:26:48,951 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:26:48,959 [     scc.git] DEBUG  src/omero/gateway/__init__.py | 36 ------------------------------------
2024-07-23 10:26:48,959 [     scc.git] DEBUG  1 file changed, 36 deletions(-)
2024-07-23 10:26:49,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:49,294 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-23 10:26:49,338 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:49,339 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:49,343 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:26:49,386 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-23 10:26:49,395 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3f3567f10> has no local changes
2024-07-23 10:26:49,395 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-py
Excluded PRs:
  - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
  - PR 387 will-moore 'Numpy pixels type' (label: exclude)
  - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
  - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
  - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.

Merged PRs:
  - PR 199 joshmoore 'user: allow setting default group'
  - PR 207 manics 'BlitzGateway.connect raise on error'
  - PR 266 joshmoore 'errors: use raise_error from cli plugins'
  - PR 299 joshmoore 'Add parents and children to omero obj'
  - PR 332 jburel 'Build conda'
  - PR 337 will-moore 'bulk.yml depth is passed to xargs'
  - PR 391 joshmoore 'Add jstack command'
  - PR 408 jburel 'remove deprecated method'

Generated by OMERO-python-superbuild-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/)'
2024-07-23 10:26:49,404 [     scc.git] DEBUG [detached HEAD f4fe4c26] merge master -Dorg -Ssuccess-only
2024-07-23 10:26:49,404 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:26:49,404 [     scc.git] INFO  Overriding base-branch from master to develop
2024-07-23 10:26:49,405 [    scc.repo] DEBUG ## PRs found:
2024-07-23 10:26:50,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2024-07-23 10:26:50,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216 HTTP/1.1" 200 None
2024-07-23 10:26:51,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216/comments HTTP/1.1" 200 None
2024-07-23 10:26:51,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206 HTTP/1.1" 200 None
2024-07-23 10:26:52,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206/comments HTTP/1.1" 200 None
2024-07-23 10:26:52,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2024-07-23 10:26:52,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2024-07-23 10:26:53,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-07-23 10:26:54,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:26:54,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-07-23 10:26:54,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2024-07-23 10:26:54,958 [    scc.repo] DEBUG   - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-07-23 10:26:55,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2024-07-23 10:26:56,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2024-07-23 10:26:56,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2024-07-23 10:26:57,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2024-07-23 10:26:57,125 [    scc.repo] DEBUG ## Branches found:
2024-07-23 10:26:57,125 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-07-23 10:26:57,126 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:57,126 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:57,130 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2024-07-23 10:26:57,133 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-23 10:26:57,134 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2024-07-23 10:26:57,138 [     scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2024-07-23 10:26:57,142 [     scc.git] DEBUG Already up to date.

2024-07-23 10:26:57,142 [     scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2024-07-23 10:26:57,591 [     scc.git] DEBUG From https://github.com/ome/omero-scripts
2024-07-23 10:26:57,592 [     scc.git] DEBUG  * branch            refs/pull/202/head -> FETCH_HEAD
2024-07-23 10:26:57,596 [     scc.git] DEBUG ## Unique users: []
2024-07-23 10:26:57,596 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:57,596 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:57,600 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-07-23 10:26:57,606 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:57,610 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-07-23 10:26:57,642 [     scc.git] DEBUG Auto-merging omero/annotation_scripts/KeyVal_to_csv.py
2024-07-23 10:26:57,642 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero/annotation_scripts/KeyVal_to_csv.py
2024-07-23 10:26:57,643 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-07-23 10:26:57,643 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-07-23 10:26:57,648 [     scc.git] DEBUG Calling 'git reset --hard c20d2734b711c659cecea83db6e2ebd7b7013636'
2024-07-23 10:26:57,653 [     scc.git] DEBUG HEAD is now at c20d273 Merge pull request #221 from imcf/fix-typechecking
2024-07-23 10:26:57,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:26:57,840 [     scc.git] DEBUG Calling 'git merge-base c20d2734b711c659cecea83db6e2ebd7b7013636 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-07-23 10:26:57,846 [     scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..c20d2734b711c659cecea83db6e2ebd7b7013636'
2024-07-23 10:26:57,850 [     scc.git] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-python-superbuild-push#124](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - omero/annotation_scripts/KeyVal_to_csv.py

--conflicts

2024-07-23 10:26:57,854 [  scc.config] DEBUG Found github.token
2024-07-23 10:26:57,854 [     scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2024-07-23 10:26:57,854 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-23 10:26:57,889 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:26:57,889 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:26:57,893 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:26:57,929 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-23 10:26:57,934 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3f351d640> has no local changes
2024-07-23 10:26:57,934 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-scripts
Excluded PRs:
  - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
  - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Generated by OMERO-python-superbuild-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/)'
2024-07-23 10:26:57,942 [     scc.git] DEBUG [detached HEAD 019a2ce] merge master -Dorg -Ssuccess-only
2024-07-23 10:26:57,942 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:26:57,942 [    scc.repo] DEBUG ## PRs found:
2024-07-23 10:26:58,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None
2024-07-23 10:26:58,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/568 HTTP/1.1" 200 None
2024-07-23 10:26:59,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/564 HTTP/1.1" 200 None
2024-07-23 10:26:59,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/564/comments HTTP/1.1" 200 None
2024-07-23 10:27:00,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde HTTP/1.1" 200 None
2024-07-23 10:27:00,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:01,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:27:02,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde HTTP/1.1" 200 None
2024-07-23 10:27:02,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/091e5fc2d35212271ac71fd66b42c611299d6fde?per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:02,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde HTTP/1.1" 200 None
2024-07-23 10:27:03,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde/status HTTP/1.1" 200 None
2024-07-23 10:27:03,431 [    scc.repo] DEBUG   - PR 564 knabar 'New table API endpoints for lower level table access'
2024-07-23 10:27:03,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/555 HTTP/1.1" 200 None
2024-07-23 10:27:04,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/555/comments HTTP/1.1" 200 None
2024-07-23 10:27:05,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e HTTP/1.1" 200 None
2024-07-23 10:27:05,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:06,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:27:06,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e HTTP/1.1" 200 None
2024-07-23 10:27:07,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/97e479b717e34179eceea2507d3e69a04b2fec1e?per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:07,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e HTTP/1.1" 200 None
2024-07-23 10:27:08,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e/status HTTP/1.1" 200 None
2024-07-23 10:27:08,204 [    scc.repo] DEBUG   - PR 555 chris-allan 'Archive status'
2024-07-23 10:27:08,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None
2024-07-23 10:27:09,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None
2024-07-23 10:27:09,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None
2024-07-23 10:27:10,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None
2024-07-23 10:27:10,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-07-23 10:27:11,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:11,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:27:12,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-07-23 10:27:12,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:13,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-07-23 10:27:13,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/status HTTP/1.1" 200 None
2024-07-23 10:27:13,567 [    scc.repo] DEBUG   - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-07-23 10:27:14,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None
2024-07-23 10:27:14,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None
2024-07-23 10:27:15,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-07-23 10:27:15,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:16,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:27:16,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-07-23 10:27:17,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:17,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-07-23 10:27:17,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/status HTTP/1.1" 200 None
2024-07-23 10:27:17,950 [    scc.repo] DEBUG   - PR 527 will-moore 'Add some initial CSP settings to test'
2024-07-23 10:27:18,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None
2024-07-23 10:27:18,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None
2024-07-23 10:27:19,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None
2024-07-23 10:27:19,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-23 10:27:20,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-23 10:27:20,495 [    scc.repo] DEBUG ## Branches found:
2024-07-23 10:27:20,495 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-07-23 10:27:20,496 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:27:20,496 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:27:20,500 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-23 10:27:20,504 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-23 10:27:20,504 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-23 10:27:20,509 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-23 10:27:20,514 [     scc.git] DEBUG Already up to date.

2024-07-23 10:27:20,514 [     scc.git] DEBUG Calling 'git fetch origin pull/527/head'
2024-07-23 10:27:20,961 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-23 10:27:20,962 [     scc.git] DEBUG  * branch                refs/pull/527/head -> FETCH_HEAD
2024-07-23 10:27:20,967 [     scc.git] DEBUG Calling 'git fetch origin pull/534/head'
2024-07-23 10:27:21,372 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-23 10:27:21,372 [     scc.git] DEBUG  * branch                refs/pull/534/head -> FETCH_HEAD
2024-07-23 10:27:21,378 [     scc.git] DEBUG Calling 'git fetch origin pull/555/head'
2024-07-23 10:27:22,100 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-23 10:27:22,100 [     scc.git] DEBUG  * branch                refs/pull/555/head -> FETCH_HEAD
2024-07-23 10:27:22,105 [     scc.git] DEBUG Calling 'git fetch origin pull/564/head'
2024-07-23 10:27:22,444 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-23 10:27:22,444 [     scc.git] DEBUG  * branch                refs/pull/564/head -> FETCH_HEAD
2024-07-23 10:27:22,449 [     scc.git] DEBUG ## Unique users: []
2024-07-23 10:27:22,449 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:27:22,449 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:27:22,455 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-07-23 10:27:22,463 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:27:22,468 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-07-23 10:27:22,569 [     scc.git] DEBUG Auto-merging omeroweb/settings.py
2024-07-23 10:27:22,570 [     scc.git] DEBUG Auto-merging setup.py
2024-07-23 10:27:22,571 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:27:22,575 [     scc.git] DEBUG  omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++-
2024-07-23 10:27:22,576 [     scc.git] DEBUG  setup.py             |  1 +
2024-07-23 10:27:22,576 [     scc.git] DEBUG  2 files changed, 42 insertions(+), 1 deletion(-)
2024-07-23 10:27:22,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:22,759 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-07-23 10:27:22,767 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:27:22,772 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-07-23 10:27:22,857 [     scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py
2024-07-23 10:27:22,857 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py
2024-07-23 10:27:22,858 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:27:22,862 [     scc.git] DEBUG  omeroweb/webclient/webclient_gateway.py | 2 +-
2024-07-23 10:27:22,862 [     scc.git] DEBUG  omeroweb/webgateway/marshal.py          | 4 ++--
2024-07-23 10:27:22,862 [     scc.git] DEBUG  2 files changed, 3 insertions(+), 3 deletions(-)
2024-07-23 10:27:23,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:23,228 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...97e479b717e34179eceea2507d3e69a04b2fec1e'
2024-07-23 10:27:23,236 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:27:23,241 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 555 (Archive status) 97e479b717e34179eceea2507d3e69a04b2fec1e'
2024-07-23 10:27:23,333 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py
2024-07-23 10:27:23,334 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:27:23,340 [     scc.git] DEBUG  omeroweb/webclient/static/webclient/javascript/ome.tree.js     |  3 +++
2024-07-23 10:27:23,340 [     scc.git] DEBUG  .../webclient/annotations/includes/core_metadata.html          |  6 ++++++
2024-07-23 10:27:23,340 [     scc.git] DEBUG  omeroweb/webclient/tree.py                                     | 10 ++++++++--
2024-07-23 10:27:23,340 [     scc.git] DEBUG  omeroweb/webgateway/marshal.py                                 |  1 +
2024-07-23 10:27:23,340 [     scc.git] DEBUG  4 files changed, 18 insertions(+), 2 deletions(-)
2024-07-23 10:27:23,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:23,637 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...091e5fc2d35212271ac71fd66b42c611299d6fde'
2024-07-23 10:27:23,645 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:27:23,650 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 564 (New table API endpoints for lower level table access) 091e5fc2d35212271ac71fd66b42c611299d6fde'
2024-07-23 10:27:23,682 [     scc.git] DEBUG Auto-merging omeroweb/settings.py
2024-07-23 10:27:23,682 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/views.py
2024-07-23 10:27:23,683 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-23 10:27:23,688 [     scc.git] DEBUG  omeroweb/settings.py         |   7 ++
2024-07-23 10:27:23,688 [     scc.git] DEBUG  omeroweb/webgateway/urls.py  |  29 +++++++
2024-07-23 10:27:23,688 [     scc.git] DEBUG  omeroweb/webgateway/views.py | 175 ++++++++++++++++++++++++++++++++++++++++++-
2024-07-23 10:27:23,688 [     scc.git] DEBUG  3 files changed, 210 insertions(+), 1 deletion(-)
2024-07-23 10:27:24,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:24,068 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-23 10:27:24,114 [     scc.git] DEBUG Get sha1 of %s
2024-07-23 10:27:24,114 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-23 10:27:24,119 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:27:24,159 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-23 10:27:24,170 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3f35314f0> has no local changes
2024-07-23 10:27:24,171 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-web
Excluded PRs:
  - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT)
  - PR 535 will-moore 'Initial working browser history' (stage: draft)
  - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.

Merged PRs:
  - PR 527 will-moore 'Add some initial CSP settings to test'
  - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
  - PR 555 chris-allan 'Archive status'
  - PR 564 knabar 'New table API endpoints for lower level table access'

Generated by OMERO-python-superbuild-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/)'
2024-07-23 10:27:24,185 [     scc.git] DEBUG [detached HEAD 34e506e9b] merge master -Dorg -Ssuccess-only
2024-07-23 10:27:24,186 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:27:24,187 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-23 10:27:24,248 [  scc.config] DEBUG Found submodule.omero-dropbox.url
2024-07-23 10:27:24,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:24,487 [  scc.config] DEBUG Found submodule.omero-marshal.url
2024-07-23 10:27:24,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:24,958 [  scc.config] DEBUG Found submodule.omero-py.url
2024-07-23 10:27:25,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:25,379 [  scc.config] DEBUG Found submodule.omero-scripts.url
2024-07-23 10:27:25,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:25,794 [  scc.config] DEBUG Found submodule.omero-web.url
2024-07-23 10:27:26,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-23 10:27:26,228 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-23 10:27:26,254 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3f46298e0> has local changes
2024-07-23 10:27:26,254 [     scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-python-superbuild
Already up to date.


Repository: ome/omero-dropbox
Already up to date.

Merged PRs:
  - PR 16 joshmoore 'Review all instances of whitelist/blacklist'

Repository: ome/omero-marshal
Excluded PRs:
  - PR 34 chris-allan 'Initial support for Event' (exclude comment)
  - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.

Merged PRs:
  - PR 69 will-moore 'Roi encoder allows Shape None'

Repository: ome/omero-py
Excluded PRs:
  - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
  - PR 387 will-moore 'Numpy pixels type' (label: exclude)
  - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
  - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
  - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.

Merged PRs:
  - PR 199 joshmoore 'user: allow setting default group'
  - PR 207 manics 'BlitzGateway.connect raise on error'
  - PR 266 joshmoore 'errors: use raise_error from cli plugins'
  - PR 299 joshmoore 'Add parents and children to omero obj'
  - PR 332 jburel 'Build conda'
  - PR 337 will-moore 'bulk.yml depth is passed to xargs'
  - PR 391 joshmoore 'Add jstack command'
  - PR 408 jburel 'remove deprecated method'

Repository: ome/omero-scripts
Excluded PRs:
  - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
  - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Repository: ome/omero-web
Excluded PRs:
  - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT)
  - PR 535 will-moore 'Initial working browser history' (stage: draft)
  - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.

Merged PRs:
  - PR 527 will-moore 'Add some initial CSP settings to test'
  - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
  - PR 555 chris-allan 'Archive status'
  - PR 564 knabar 'New table API endpoints for lower level table access'

Generated by OMERO-python-superbuild-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/124/)'
2024-07-23 10:27:26,263 [     scc.git] DEBUG [detached HEAD 46f6c94] merge master -Dorg -Ssuccess-only
2024-07-23 10:27:26,264 [   scc.merge] INFO  Repository: ome/omero-python-superbuild
2024-07-23 10:27:26,264 [     scc.git] DEBUG  6 files changed, 10 insertions(+), 10 deletions(-)
2024-07-23 10:27:26,264 [   scc.merge] INFO  Already up to date.
2024-07-23 10:27:26,264 [   scc.merge] INFO  
2024-07-23 10:27:26,264 [   scc.merge] INFO  
2024-07-23 10:27:26,264 [   scc.merge] INFO  Repository: ome/omero-dropbox
2024-07-23 10:27:26,264 [   scc.merge] INFO  Already up to date.
2024-07-23 10:27:26,264 [   scc.merge] INFO  
2024-07-23 10:27:26,264 [   scc.merge] INFO  Merged PRs:
2024-07-23 10:27:26,264 [   scc.merge] INFO    - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-07-23 10:27:26,264 [   scc.merge] INFO  
2024-07-23 10:27:26,264 [   scc.merge] INFO  Repository: ome/omero-marshal
2024-07-23 10:27:26,264 [   scc.merge] INFO  Excluded PRs:
2024-07-23 10:27:26,264 [   scc.merge] INFO    - PR 34 chris-allan 'Initial support for Event' (exclude comment)
2024-07-23 10:27:26,264 [   scc.merge] INFO    - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
2024-07-23 10:27:26,264 [   scc.merge] INFO  Already up to date.
2024-07-23 10:27:26,264 [   scc.merge] INFO  
2024-07-23 10:27:26,264 [   scc.merge] INFO  Merged PRs:
2024-07-23 10:27:26,264 [   scc.merge] INFO    - PR 69 will-moore 'Roi encoder allows Shape None'
2024-07-23 10:27:26,265 [   scc.merge] INFO  
2024-07-23 10:27:26,265 [   scc.merge] INFO  Repository: ome/omero-py
2024-07-23 10:27:26,265 [   scc.merge] INFO  Excluded PRs:
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 387 will-moore 'Numpy pixels type' (label: exclude)
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
2024-07-23 10:27:26,265 [   scc.merge] INFO  Already up to date.
2024-07-23 10:27:26,265 [   scc.merge] INFO  
2024-07-23 10:27:26,265 [   scc.merge] INFO  Merged PRs:
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 199 joshmoore 'user: allow setting default group'
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 207 manics 'BlitzGateway.connect raise on error'
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 299 joshmoore 'Add parents and children to omero obj'
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 332 jburel 'Build conda'
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 391 joshmoore 'Add jstack command'
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 408 jburel 'remove deprecated method'
2024-07-23 10:27:26,265 [   scc.merge] INFO  
2024-07-23 10:27:26,265 [   scc.merge] INFO  Repository: ome/omero-scripts
2024-07-23 10:27:26,265 [   scc.merge] INFO  Excluded PRs:
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2024-07-23 10:27:26,265 [   scc.merge] INFO  Already up to date.
2024-07-23 10:27:26,265 [   scc.merge] INFO  
2024-07-23 10:27:26,265 [   scc.merge] INFO  Conflicting PRs (not included):
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-07-23 10:27:26,265 [   scc.merge] INFO  
2024-07-23 10:27:26,265 [   scc.merge] INFO  Repository: ome/omero-web
2024-07-23 10:27:26,265 [   scc.merge] INFO  Excluded PRs:
2024-07-23 10:27:26,265 [   scc.merge] INFO    - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT)
2024-07-23 10:27:26,266 [   scc.merge] INFO    - PR 535 will-moore 'Initial working browser history' (stage: draft)
2024-07-23 10:27:26,266 [   scc.merge] INFO    - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
2024-07-23 10:27:26,266 [   scc.merge] INFO  Already up to date.
2024-07-23 10:27:26,266 [   scc.merge] INFO  
2024-07-23 10:27:26,266 [   scc.merge] INFO  Merged PRs:
2024-07-23 10:27:26,266 [   scc.merge] INFO    - PR 527 will-moore 'Add some initial CSP settings to test'
2024-07-23 10:27:26,266 [   scc.merge] INFO    - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-07-23 10:27:26,266 [   scc.merge] INFO    - PR 555 chris-allan 'Archive status'
2024-07-23 10:27:26,266 [   scc.merge] INFO    - PR 564 knabar 'New table API endpoints for lower level table access'
2024-07-23 10:27:26,266 [   scc.merge] INFO  
2024-07-23 10:27:26,266 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-07-23 10:27:26,266 [     scc.git] DEBUG Calling 'git remote'
2024-07-23 10:27:26,270 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-07-23 10:27:26,270 [     scc.git] DEBUG Calling 'git remote'
2024-07-23 10:27:26,274 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:27:26,274 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-07-23 10:27:26,274 [     scc.git] DEBUG Calling 'git remote'
2024-07-23 10:27:26,278 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:27:26,278 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-07-23 10:27:26,278 [     scc.git] DEBUG Calling 'git remote'
2024-07-23 10:27:26,282 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:27:26,282 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-07-23 10:27:26,282 [     scc.git] DEBUG Calling 'git remote'
2024-07-23 10:27:26,286 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-23 10:27:26,286 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-07-23 10:27:26,286 [     scc.git] DEBUG Calling 'git remote'
2024-07-23 10:27:26,289 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
Update component versions
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
    download_blitz_target()
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
    resp = urlopen(loc)
  File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
    return opener.open(url, data, timeout)
  File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
    response = meth(req, response)
  File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
    response = self.parent.error(
  File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
    return self._call_chain(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
    result = func(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
    raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
    download_blitz_target()
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
    resp = urlopen(loc)
  File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
    return opener.open(url, data, timeout)
  File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
    response = meth(req, response)
  File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
    response = self.parent.error(
  File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
    return self._call_chain(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
    result = func(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
    raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
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Up-to-date: 
Commit all component version changes
Entering 'omero-dropbox'
Entering 'omero-marshal'
Entering 'omero-py'
Entering 'omero-scripts'
Entering 'omero-web'
Entering 'omero-dropbox'
HEAD detached from a4307f4
nothing to commit, working tree clean
Entering 'omero-marshal'
HEAD detached from cca4c2f
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Entering 'omero-py'
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Entering 'omero-scripts'
HEAD detached from c20d273
nothing to commit, working tree clean
Entering 'omero-web'
HEAD detached from ba8c7e23c
nothing to commit, working tree clean
HEAD detached from 508496f
nothing to commit, working tree clean
2024-07-23 10:27:57,194 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS