Skipping 2,213 KB..
Full Log#16 3.508
#16 3.508 formats-api.jar:
#16 3.509 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.534 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.573 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 3.577 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 3.587 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 3.588 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.591 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.591
#16 3.591 deps-turbojpeg:
#16 3.591
#16 3.591 jar-turbojpeg:
#16 3.691 [echo] isSnapshot = true
#16 3.840
#16 3.840 init-title:
#16 3.840 [echo] ----------=========== turbojpeg ===========----------
#16 3.840
#16 3.840 init-timestamp:
#16 3.841
#16 3.841 init:
#16 3.841
#16 3.841 copy-resources:
#16 3.841 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.842
#16 3.842 compile:
#16 3.852 [resolver:resolve] Resolving artifacts
#16 3.855 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.058 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.058 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 4.058 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 4.058 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 4.749 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 4.749 [javac] protected void finalize() throws Throwable {
#16 4.749 [javac] ^
#16 4.749 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 4.749 [javac] super.finalize();
#16 4.749 [javac] ^
#16 4.749 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 4.749 [javac] protected void finalize() throws Throwable {
#16 4.749 [javac] ^
#16 4.749 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 4.749 [javac] super.finalize();
#16 4.749 [javac] ^
#16 4.749 [javac] 8 warnings
#16 4.749
#16 4.749 jar:
#16 4.753 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.938 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 4.945 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 4.951 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 4.952 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.956 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.957
#16 4.957 deps-formats-bsd:
#16 4.957
#16 4.957 jar-formats-bsd:
#16 5.074 [echo] isSnapshot = true
#16 5.220
#16 5.220 init-title:
#16 5.220 [echo] ----------=========== formats-bsd ===========----------
#16 5.220
#16 5.220 init-timestamp:
#16 5.221
#16 5.221 init:
#16 5.221
#16 5.221 copy-resources:
#16 5.221 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.224 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.225
#16 5.225 compile:
#16 5.440 [resolver:resolve] Resolving artifacts
#16 5.469 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.677 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.677 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 5.677 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 5.677 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 6.778 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.778 [javac] import loci.common.ReflectedUniverse;
#16 6.778 [javac] ^
#16 6.979 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FilePattern.java:165: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 6.979 [javac] lt.add(new Integer(left));
#16 6.979 [javac] ^
#16 6.979 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FilePattern.java:171: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 6.979 [javac] gt.add(new Integer(right));
#16 6.979 [javac] ^
#16 7.179 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.179 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.179 [javac] ^
#16 7.179 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.179 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.179 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.180 [javac] int n = reader.getCoreMetadataList().size();
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.180 [javac] reader.setCoreIndex(coreIndex);
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.180 [javac] int n = reader.getCoreMetadataList().size();
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.180 [javac] int n = reader.getCoreMetadataList().size();
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.180 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.180 [javac] int n = reader.getCoreMetadataList().size();
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.180 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.180 [javac] int n = reader.getCoreMetadataList().size();
#16 7.180 [javac] ^
#16 7.180 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.181 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.181 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.181 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.181 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.181 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.181 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.181 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.181 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.181 [javac] ^
#16 7.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.181 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.181 [javac] ^
#16 7.282 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/ImageTools.java:121: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.282 [javac] if (max == null) max = new Double(0xffff);
#16 7.282 [javac] ^
#16 7.282 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/ImageTools.java:132: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.282 [javac] if (max == null) max = new Double(0xffffffffL);
#16 7.282 [javac] ^
#16 7.282 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/ImageTools.java:143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.282 [javac] if (max == null) max = new Double(Float.MAX_VALUE);
#16 7.282 [javac] ^
#16 7.282 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/ImageTools.java:154: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.282 [javac] if (max == null) max = new Double(Double.MAX_VALUE);
#16 7.282 [javac] ^
#16 7.282 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/ImageTools.java:520: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.282 [javac] rtn[0] = new Double(min);
#16 7.282 [javac] ^
#16 7.282 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/ImageTools.java:521: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.282 [javac] rtn[1] = new Double(max);
#16 7.282 [javac] ^
#16 7.382 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:122: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.382 [javac] return new Double(chanMin[series][theC]);
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:144: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.383 [javac] return new Double(chanMax[series][theC]);
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:158: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.383 [javac] return chanMin == null ? null : new Double(chanMin[getCoreIndex()][theC]);
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:172: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.383 [javac] return chanMax == null ? null : new Double(chanMax[getCoreIndex()][theC]);
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:195: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.383 [javac] min[c] = new Double(planeMin[series][pBase + c]);
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:220: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.383 [javac] max[c] = new Double(planeMax[series][pBase + c]);
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.383 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#16 7.383 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#16 7.383 [javac] ^
#16 7.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#16 7.383 [javac] URL url = new URL(urlPath);
#16 7.383 [javac] ^
#16 7.483 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.483 [javac] BitWriter out = new BitWriter();
#16 7.483 [javac] ^
#16 7.483 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.483 [javac] BitWriter out = new BitWriter();
#16 7.483 [javac] ^
#16 7.584 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 7.584 [javac] return new Double(v);
#16 7.584 [javac] ^
#16 7.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/gui/CacheComponent.java:317: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 7.684 [javac] range[i].setValue(new Integer(rng[i]));
#16 7.684 [javac] ^
#16 7.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/gui/DataConverter.java:346: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 7.684 [javac] new Integer(swap.getSeriesCount()));
#16 7.684 [javac] ^
#16 7.884 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/AVIReader.java:806: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 7.884 [javac] offsets.add(new Long(in.getFilePointer()));
#16 7.885 [javac] ^
#16 7.885 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/AVIReader.java:807: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 7.885 [javac] lengths.add(new Long(size));
#16 7.885 [javac] ^
#16 7.885 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/AVIReader.java:881: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 7.885 [javac] offsets.add(new Long(useSOM ? startOfMovi + offset : offset));
#16 7.885 [javac] ^
#16 7.885 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/AVIReader.java:883: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 7.885 [javac] lengths.add(new Long(chunkSize));
#16 7.885 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/BaseTiffReader.java:569: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 7.985 [javac] put(key, new Boolean(value));
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/BaseTiffReader.java:571: warning: [removal] Byte(byte) in Byte has been deprecated and marked for removal
#16 7.985 [javac] protected void put(String key, byte value) { put(key, new Byte(value)); }
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/BaseTiffReader.java:572: warning: [removal] Character(char) in Character has been deprecated and marked for removal
#16 7.985 [javac] protected void put(String key, char value) { put(key, new Character(value)); }
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/BaseTiffReader.java:573: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 7.985 [javac] protected void put(String key, double value) { put(key, new Double(value)); }
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/BaseTiffReader.java:574: warning: [removal] Float(float) in Float has been deprecated and marked for removal
#16 7.985 [javac] protected void put(String key, float value) { put(key, new Float(value)); }
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/BaseTiffReader.java:575: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 7.985 [javac] protected void put(String key, long value) { put(key, new Long(value)); }
#16 7.985 [javac] ^
#16 7.985 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/BaseTiffReader.java:576: warning: [removal] Short(short) in Short has been deprecated and marked for removal
#16 7.985 [javac] protected void put(String key, short value) { put(key, new Short(value)); }
#16 7.985 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1862: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.186 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1869: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.186 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1876: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.186 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/FakeReader.java:1082: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.186 [javac] return new Double(ROI_SPACING * i % sizeX);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/FakeReader.java:1086: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.186 [javac] return new Double(ROI_SPACING * ((int) ROI_SPACING * i / sizeX) % sizeY);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/FakeReader.java:1114: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.186 [javac] store.setEllipseRadiusX(new Double(ROI_SPACING / 2), roiCount, 0);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/FakeReader.java:1115: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.186 [javac] store.setEllipseRadiusY(new Double(ROI_SPACING / 2), roiCount, 0);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/FakeReader.java:1201: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.186 [javac] store.setRectangleWidth(new Double(ROI_SPACING / 2), roiCount, 0);
#16 8.186 [javac] ^
#16 8.186 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/FakeReader.java:1202: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.186 [javac] store.setRectangleHeight(new Double(ROI_SPACING / 2), roiCount, 0);
#16 8.186 [javac] ^
#16 8.286 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:953: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.286 [javac] channelNames.put(new Integer(n), names[n].trim());
#16 8.286 [javac] ^
#16 8.286 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:967: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.286 [javac] doubleValue = new Double(value);
#16 8.286 [javac] ^
#16 8.286 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1014: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 8.286 [javac] n = new Integer(key.substring(12).trim());
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1015: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.287 [javac] n = new Integer(n.intValue() - 1);
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1026: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.287 [javac] wavelengths.put(new Integer(laser), new Double(value));
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1026: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.287 [javac] wavelengths.put(new Integer(laser), new Double(value));
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1035: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.287 [javac] wavelengths.put(new Integer(i), new Double(waves[i]));
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1035: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.287 [javac] wavelengths.put(new Integer(i), new Double(waves[i]));
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1046: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.287 [javac] laserPower = new Double(value); //TODO ARG i.e. doubleValue
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1055: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.287 [javac] laserRepetitionRate = new Double(repRate);
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1137: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 8.287 [javac] Integer n = new Integer(key.substring(12, key.indexOf(" ", 12)));
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1141: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.287 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1147: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.287 [javac] emWaves[0] = new Double(value.split(" ")[1].trim());
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1153: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.287 [javac] exWaves[0] = new Double(value.split(" ")[1].trim());
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1166: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.287 [javac] Double expDouble = new Double(expTime);
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1207: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.287 [javac] emWaves[n] = new Double(Double.parseDouble(waves[n]));
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1219: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.287 [javac] exWaves[n] = new Double(Double.parseDouble(waves[n]));
#16 8.287 [javac] ^
#16 8.287 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1232: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.287 [javac] pinholes.put(new Integer(channel++), new Double(pins[n]));
#16 8.287 [javac] ^
#16 8.288 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1232: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.288 [javac] pinholes.put(new Integer(channel++), new Double(pins[n]));
#16 8.288 [javac] ^
#16 8.288 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1344: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.288 [javac] channelLengths.add(new Integer(axisLengths[i]));
#16 8.288 [javac] ^
#16 8.288 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1922: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.288 [javac] values[n] = new Double(token);
#16 8.288 [javac] ^
#16 8.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/MicromanagerReader.java:418: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.388 [javac] store.setDetectorSettingsGain(new Double(p.gain), i, c);
#16 8.388 [javac] ^
#16 8.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/MicromanagerReader.java:1170: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 8.388 [javac] major = new Integer(version[0]);
#16 8.388 [javac] ^
#16 8.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OBFReader.java:360: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.388 [javac] lengths.add(new Double(length));
#16 8.388 [javac] ^
#16 8.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OBFReader.java:369: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.388 [javac] offsets.add(new Double(offset));
#16 8.388 [javac] ^
#16 8.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OBFReader.java:465: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 8.388 [javac] stepsPresent.add(new Boolean(present != 0));
#16 8.388 [javac] ^
#16 8.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OBFReader.java:472: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 8.388 [javac] stepLabelsPresent.add(new Boolean(present != 0));
#16 8.388 [javac] ^
#16 8.388 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OBFReader.java:539: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.388 [javac] list.add(new Double(step));
#16 8.388 [javac] ^
#16 8.488 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.488 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.488 [javac] ^
#16 8.488 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.489 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.489 [javac] ^
#16 8.489 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/QTReader.java:516: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.489 [javac] offsets.add(new Integer(off));
#16 8.489 [javac] ^
#16 8.489 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/QTReader.java:523: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.489 [javac] offsets.add(new Integer(off));
#16 8.489 [javac] ^
#16 8.489 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/QTReader.java:528: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.489 [javac] offsets.add(new Integer(in.readInt()));
#16 8.489 [javac] ^
#16 8.489 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/QTReader.java:579: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.489 [javac] chunkSizes.add(new Integer(in.readInt()));
#16 8.489 [javac] ^
#16 8.846 [javac] Note: Some input files additionally use or override a deprecated API.
#16 8.846 [javac] Note: Some input files additionally use or override a deprecated API that is marked for removal.
#16 8.846 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.846 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.846 [javac] 100 warnings
#16 8.846
#16 8.846 formats-bsd.jar:
#16 8.855 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.564 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 9.567 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 9.569 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 9.571 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 9.573 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.573
#16 9.573 deps-formats-gpl:
#16 9.573
#16 9.573 jar-formats-gpl:
#16 9.669 [echo] isSnapshot = true
#16 9.820
#16 9.820 init-title:
#16 9.820 [echo] ----------=========== formats-gpl ===========----------
#16 9.820
#16 9.820 init-timestamp:
#16 9.821
#16 9.821 init:
#16 9.821
#16 9.821 copy-resources:
#16 9.821 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.822 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.823
#16 9.823 compile:
#16 10.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.48 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.51 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.94 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.95 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.96 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.98 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 11.12 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 11.18 [resolver:resolve] Resolving artifacts
#16 11.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.24 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.24 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.26 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.26 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.67 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.68 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.70 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.91 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 11.91 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 11.91 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 11.91 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 13.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.11 [javac] import loci.formats.codec.BitWriter;
#16 13.11 [javac] ^
#16 13.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.11 [javac] import loci.formats.codec.BitWriter;
#16 13.11 [javac] ^
#16 13.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:155: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.41 [javac] xSize = new Double(token);
#16 13.41 [javac] ^
#16 13.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:158: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.41 [javac] ySize = new Double(token);
#16 13.41 [javac] ^
#16 13.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:161: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.41 [javac] zSize = new Double(token);
#16 13.41 [javac] ^
#16 13.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:172: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.41 [javac] xLength = new Double(token);
#16 13.41 [javac] ^
#16 13.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:175: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.41 [javac] yLength = new Double(token);
#16 13.41 [javac] ^
#16 13.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AIMReader.java:178: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.41 [javac] zLength = new Double(token);
#16 13.41 [javac] ^
#16 13.51 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:241: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.51 [javac] new ElectricPotential(new Double(voltage), UNITS.VOLT), 0, 0);
#16 13.51 [javac] ^
#16 13.51 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:256: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.51 [javac] new Double(magnification), 0, 0);
#16 13.51 [javac] ^
#16 13.51 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/AliconaReader.java:260: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.51 [javac] store.setObjectiveWorkingDistance(new Length(new Double(workingDistance), UNITS.MICROMETER), 0, 0);
#16 13.51 [javac] ^
#16 13.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:463: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.61 [javac] Double magnification = new Double(mag);
#16 13.61 [javac] ^
#16 13.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:467: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.61 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 13.61 [javac] ^
#16 13.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:765: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.61 [javac] store.setRectangleX(new Double(cols[2]), i - firstRow, 0);
#16 13.61 [javac] ^
#16 13.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:766: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.61 [javac] store.setRectangleY(new Double(cols[3]), i - firstRow, 0);
#16 13.61 [javac] ^
#16 13.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:767: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.61 [javac] store.setRectangleWidth(new Double(cols[4]), i - firstRow, 0);
#16 13.61 [javac] ^
#16 13.61 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BDReader.java:768: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.61 [javac] store.setRectangleHeight(new Double(cols[5]), i - firstRow, 0);
#16 13.61 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:403: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.71 [javac] try { exp = new Double(exposure); }
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:847: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.71 [javac] if (!tiles.containsKey(new Integer(value))) {
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:851: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.71 [javac] int v = tiles.get(new Integer(value)).intValue() + 1;
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.71 [javac] tiles.put(new Integer(value), new Integer(v));
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:852: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 13.71 [javac] tiles.put(new Integer(value), new Integer(v));
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:912: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.71 [javac] Double wave = new Double(value);
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:921: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 13.71 [javac] Double wave = new Double(Double.parseDouble(value));
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:934: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 13.71 [javac] if (exposureTime.get(new Integer(cIndex)) == null) {
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:936: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 13.71 [javac] exposureTime.put(new Integer(cIndex), String.valueOf(exp));
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:963: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.71 [javac] store.setObjectiveLensNA(new Double(value), 0, 0);
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:974: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.71 [javac] store.setObjectiveLensNA(new Double(na), 0, 0);
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:981: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.71 [javac] store.setObjectiveWorkingDistance(new Length(new Double(value), UNITS.MICROMETER), 0, 0);
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1007: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.71 [javac] detectorGain.put(cIndex, new Double(value));
#16 13.71 [javac] ^
#16 13.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BaseZeissReader.java:1010: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.71 [javac] detectorOffset.put(cIndex, new Double(value));
#16 13.71 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:505: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 13.81 [javac] store.setObjectiveLensNA(new Double(lens), 0, 0);
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:506: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 13.81 [javac] store.setObjectiveNominalMagnification(new Double(magFactor), 0, 0);
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:676: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] offset.add(new Double(value));
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:687: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] gain.add(new Double(value));
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:701: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] Double pixelSize = new Double(values[2]);
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:725: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] Double pixelSize = new Double(values[3]);
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:733: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] Double pixelSize = new Double(values[3]);
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:757: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] Double sizeZ = new Double(values[14]);
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:854: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] store.setDetectorOffset(new Double(values[i * 3]), 0, i);
#16 13.81 [javac] ^
#16 13.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadReader.java:855: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.81 [javac] store.setDetectorGain(new Double(values[i * 3 + 1]), 0, i);
#16 13.81 [javac] ^
#16 13.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:248: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.91 [javac] gain = new Double(value);
#16 13.91 [javac] ^
#16 13.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:251: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.91 [javac] exposureTime = new Double(value);
#16 13.91 [javac] ^
#16 13.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:290: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.91 [javac] physicalSizeX = new Double(attrValue) / getSizeX();
#16 13.91 [javac] ^
#16 13.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BioRadSCNReader.java:294: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 13.91 [javac] physicalSizeY = new Double(attrValue) / getSizeY();
#16 13.91 [javac] ^
#16 13.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:219: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.91 [javac] i1 = new Integer(s1);
#16 13.91 [javac] ^
#16 13.91 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/BrukerReader.java:224: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 13.91 [javac] i2 = new Integer(s2);
#16 13.91 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1749: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 14.11 [javac] value = new Boolean(vsi.readBoolean()).toString();
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1887: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 14.11 [javac] pyramid.exposureTimes.add(new Long(value));
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1890: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 14.11 [javac] pyramid.defaultExposureTime = new Long(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1894: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 14.11 [javac] pyramid.acquisitionTime = new Long(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1897: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.refractiveIndex = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1900: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.magnification = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1903: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.numericalAperture = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1906: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.workingDistance = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1912: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.11 [javac] pyramid.objectiveTypes.add(new Integer(value));
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1915: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.11 [javac] pyramid.bitDepth = new Integer(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1918: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.11 [javac] pyramid.binningX = new Integer(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1921: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.11 [javac] pyramid.binningY = new Integer(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1924: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.gain = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1927: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.offset = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1930: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.redGain = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1933: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.greenGain = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1936: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.blueGain = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1939: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.redOffset = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1942: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.greenOffset = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1945: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.blueOffset = new Double(value);
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1949: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.channelWavelengths.add(new Double(value));
#16 14.11 [javac] ^
#16 14.11 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellSensReader.java:1952: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.11 [javac] pyramid.workingDistance = new Double(value);
#16 14.11 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:152: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.21 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:603: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.21 [javac] if (new Boolean(mapping[col].trim()).booleanValue()) {
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:636: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.21 [javac] fieldMap[row][col] = new Boolean(mapping[col].trim()).booleanValue();
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:640: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 14.21 [javac] doChannels = new Boolean(value.toLowerCase());
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:781: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] Double posX = new Double(axes[0]);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:782: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] Double posY = new Double(axes[1]);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:802: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] Double xSize = new Double(value.substring(0, s).trim());
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:803: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] Double ySize = new Double(value.substring(s + 1, end).trim());
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:830: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] Double gain = new Double(token.replaceAll("gain ", ""));
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:857: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] Double emission = new Double(em);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/CellWorxReader.java:858: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] Double excitation = new Double(ex);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:539: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 14.21 [javac] Long color = new Long(value);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:551: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.deltaT = new Double(value);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:557: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.emWavelength = new Double(value);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:560: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.exWavelength = new Double(value);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:564: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.sizeX = correctUnits(new Double(value), unit);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:568: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.sizeY = correctUnits(new Double(value), unit);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:572: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.positionX = correctUnits(new Double(value), unit);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:576: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.positionY = correctUnits(new Double(value), unit);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:580: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 14.21 [javac] p.positionZ = correctUnits(new Double(value), unit);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:728: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.21 [javac] plateRows = new Integer(value);
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ColumbusReader.java:731: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
#16 14.21 [javac] plateColumns = new Integer(value);
#16 14.21 [javac] ^
#16 14.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:862: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.31 [javac] Double x = new Double(pixX);
#16 14.31 [javac] ^
#16 14.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:867: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.31 [javac] Double y = new Double(pixY);
#16 14.31 [javac] ^
#16 14.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:872: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.31 [javac] Double z = new Double(pixZ);
#16 14.31 [javac] ^
#16 14.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:951: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.31 [javac] expTime[coords[1]] = new Double(hdr.expTime);
#16 14.31 [javac] ^
#16 14.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java:956: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 14.31 [javac] new Time(new Double(hdr.timeStampSeconds), UNITS.SECOND), series, i);
#16 14.31 [javac] ^
#16 16.20 [javac] Note: Some input files additionally use or override a deprecated API.
#16 16.20 [javac] Note: Some input files additionally use or override a deprecated API that is marked for removal.
#16 16.20 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.20 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.20 [javac] 100 warnings
#16 16.20 [javac] only showing the first 100 warnings, of 101 total; use -Xmaxwarns if you would like to see more
#16 16.20
#16 16.20 formats-gpl.jar:
#16 16.20 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.35 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.36 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 16.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 16.37 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.37 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.37
#16 16.37 deps-bio-formats-plugins:
#16 16.37
#16 16.37 jar-bio-formats-plugins:
#16 16.47 [echo] isSnapshot = true
#16 16.60
#16 16.60 init-title:
#16 16.61 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.61
#16 16.61 init-timestamp:
#16 16.61
#16 16.61 init:
#16 16.61
#16 16.61 copy-resources:
#16 16.61 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.61 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.61
#16 16.61 compile:
#16 16.87 [resolver:resolve] Resolving artifacts
#16 16.88 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.09 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.09 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 17.09 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 17.09 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 17.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.99 [javac] import loci.common.ReflectedUniverse;
#16 17.99 [javac] ^
#16 17.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.99 [javac] import loci.common.ReflectedUniverse;
#16 17.99 [javac] ^
#16 18.39 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/out/Exporter.java:520: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.39 [javac] store.setPixelsTimeIncrement(FormatTools.getTime(new Double(cal.frameInterval), cal.getTimeUnit()), 0);
#16 18.39 [javac] ^
#16 18.49 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.49 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.49 [javac] ^
#16 18.49 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java:352: warning: [deprecation] newInstance() in Class has been deprecated
#16 18.49 [javac] Object ir = irClass.newInstance();
#16 18.49 [javac] ^
#16 18.49 [javac] where T is a type-variable:
#16 18.49 [javac] T extends Object declared in class Class
#16 18.49 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java:398: warning: [deprecation] newInstance() in Class has been deprecated
#16 18.49 [javac] Object matlab = matlabClass.newInstance();
#16 18.49 [javac] ^
#16 18.49 [javac] where T is a type-variable:
#16 18.49 [javac] T extends Object declared in class Class
#16 18.49 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/FormatEntry.java:75: warning: [deprecation] newInstance() in Class has been deprecated
#16 18.49 [javac] fw = (IFormatWidgets) fwClass.newInstance();
#16 18.49 [javac] ^
#16 18.49 [javac] where T is a type-variable:
#16 18.49 [javac] T extends Object declared in class Class
#16 18.49 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#16 18.49 [javac] URL url = new URL(urlPath);
#16 18.49 [javac] ^
#16 18.59 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.59 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.59 [javac] ^
#16 18.59 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.59 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.59 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:85: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "SizeX", new Integer(r.getSizeX()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:86: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "SizeY", new Integer(r.getSizeY()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:87: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "SizeZ", new Integer(r.getSizeZ()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:88: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "SizeT", new Integer(r.getSizeT()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:89: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "SizeC", new Integer(r.getSizeC()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:90: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "IsRGB", new Boolean(r.isRGB()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:93: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "LittleEndian", new Boolean(r.isLittleEndian()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:95: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "IsInterleaved", new Boolean(r.isInterleaved()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImporterMetadata.java:96: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.69 [javac] put(pad + s + "BitsPerPixel", new Integer(r.getBitsPerPixel()));
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.69 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.69 [javac] ^
#16 18.69 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.69 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.69 [javac] ^
#16 18.79 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/IdDialog.java:170: warning: [removal] Long(String) in Long has been deprecated and marked for removal
#16 18.79 [javac] groupID = new Long(group);
#16 18.79 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:130: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] imageCount[0] = new Double(r.getImageCount());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:133: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] public void getSizeX(Double[] sizeX) { sizeX[0] = new Double(r.getSizeX()); }
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:134: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] public void getSizeY(Double[] sizeY) { sizeY[0] = new Double(r.getSizeY()); }
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:135: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] public void getSizeZ(Double[] sizeZ) { sizeZ[0] = new Double(r.getSizeZ()); }
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:136: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] public void getSizeC(Double[] sizeC) { sizeC[0] = new Double(r.getSizeC()); }
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:137: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] public void getSizeT(Double[] sizeT) { sizeT[0] = new Double(r.getSizeT()); }
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:144: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] effectiveSizeC[0] = new Double(r.getEffectiveSizeC());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:148: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] rgbChannelCount[0] = new Double(r.getRGBChannelCount());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:157: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] channelDimCount[0] = new Double(moduloC.length() > 1 ? 2 : 1);
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:163: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] channelDimLength[0] = new Double(moduloC.length() > 1 ? r.getSizeC() / moduloC.length() : r.getSizeC());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:165: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] channelDimLength[0] = new Double(moduloC.length());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:172: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 18.89 [javac] channelDimType[0] = new Double(moduloC.length() > 1 ? moduloC.parentType : FormatTools.CHANNEL);
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:174: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 18.89 [javac] channelDimType[0] = new Double(moduloC.type);
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:273: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] new Double(r.getSizeX()), new Double(r.getSizeY()));
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:273: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] new Double(r.getSizeX()), new Double(r.getSizeY()));
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:313: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] seriesCount[0] = new Double(r.getSeriesCount());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:326: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] seriesNum[0] = new Double(r.getSeries());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:334: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 18.89 [javac] normalize[0] = new Boolean(r.isNormalized());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:342: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 18.89 [javac] populate[0] = new Boolean(r.isOriginalMetadataPopulated());
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:376: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] count[0] = new Double(r.getUsedFiles().length);
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:388: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.89 [javac] index[0] = new Double(r.getIndex(z.intValue(), c.intValue(), t.intValue()));
#16 18.89 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:393: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] z[0] = new Double(zct[0]);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:394: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] c[0] = new Double(zct[1]);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:395: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] t[0] = new Double(zct[2]);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:475: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] exposureTime[0] = val == null ? new Double(Double.NaN) : val;
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:527: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] if (sizeX[0] == null) sizeX[0] = new Double(Double.NaN);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:537: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] if (sizeY[0] == null) sizeY[0] = new Double(Double.NaN);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:547: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] if (sizeZ[0] == null) sizeZ[0] = new Double(Double.NaN);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/macro/LociFunctions.java:554: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] if (sizeT[0] == null) sizeT[0] = new Double(Double.NaN);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#16 18.99 [javac] url = new URL(path);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:127: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 18.99 [javac] record("add", new Double(value), double.class);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:133: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] record("add", new Integer(value), int.class);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:139: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] record("and", new Integer(value), int.class);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:157: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 18.99 [javac] record("convertToByte", new Boolean(doScaling), boolean.class);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:175: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
#16 18.99 [javac] record("convertToShort", new Boolean(doScaling), boolean.class);
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:181: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] record("convolve", new Object[] {kernel, new Integer(kernelWidth),
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:182: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] new Integer(kernelHeight)}, new Class[] {float[].class,
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:195: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] record("copyBits", new Object[] {ip, new Integer(xloc), new Integer(yloc),
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:195: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] record("copyBits", new Object[] {ip, new Integer(xloc), new Integer(yloc),
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:196: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] new Integer(mode)}, new Class[] {ImageProcessor.class, int.class,
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:319: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 18.99 [javac] record("createProcessor", new Object[] {new Integer(width),
#16 18.99 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:320: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(height)}, new Class[] {int.class, int.class});
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:338: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawDot", new Object[] {new Integer(xcenter),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:339: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(ycenter)}, new Class[] {int.class, int.class});
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:345: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawLine", new Object[] {new Integer(x1), new Integer(y1),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:345: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawLine", new Object[] {new Integer(x1), new Integer(y1),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:346: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(x2), new Integer(y2)}, new Class[] {int.class, int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:346: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(x2), new Integer(y2)}, new Class[] {int.class, int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:353: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawOval", new Object[] {new Integer(x), new Integer(y),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:353: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawOval", new Object[] {new Integer(x), new Integer(y),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:354: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(width), new Integer(height)}, new Class[] {int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:354: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(width), new Integer(height)}, new Class[] {int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:361: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawPixel", new Object[] {new Integer(x), new Integer(y)},
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:361: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawPixel", new Object[] {new Integer(x), new Integer(y)},
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:374: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawRect", new Object[] {new Integer(x), new Integer(y),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:374: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawRect", new Object[] {new Integer(x), new Integer(y),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:375: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(width), new Integer(height)}, new Class[] {int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:375: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(width), new Integer(height)}, new Class[] {int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:388: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawString", new Object[] {s, new Integer(x), new Integer(y)},
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:388: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("drawString", new Object[] {s, new Integer(x), new Integer(y)},
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:425: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("fillOval", new Object[] {new Integer(x), new Integer(y),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:425: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("fillOval", new Object[] {new Integer(x), new Integer(y),
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:426: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(width), new Integer(height)}, new Class[] {int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:426: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(width), new Integer(height)}, new Class[] {int.class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:439: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("filter", new Integer(type), int.class);
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:463: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 19.00 [javac] record("gamma", new Double(value), double.class);
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:469: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("get", new Integer(index), int.class);
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:475: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("get", new Object[] {new Integer(x), new Integer(y)},
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:475: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("get", new Object[] {new Integer(x), new Integer(y)},
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:530: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("getColumn", new Object[] {new Integer(x), new Integer(y), data,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:530: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("getColumn", new Object[] {new Integer(x), new Integer(y), data,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:531: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] new Integer(length)}, new Class[] {int.class, int.class, int[].class,
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:550: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("getf", new Integer(index), int.class);
#16 19.00 [javac] ^
#16 19.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/util/RecordedImageProcessor.java:556: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 19.00 [javac] record("getf", new Object[] {new Integer(x), new Integer(y)},
#16 19.00 [javac] ^
#16 19.19 [javac] Note: Some input files additionally use or override a deprecated API that is marked for removal.
#16 19.19 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.19 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.19 [javac] 100 warnings
#16 19.19
#16 19.19 bio-formats-plugins.jar:
#16 19.19 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.23 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 19.23 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 19.24 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 19.24 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.24 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.24
#16 19.24 deps-bio-formats-tools:
#16 19.24
#16 19.24 jar-bio-formats-tools:
#16 19.34 [echo] isSnapshot = true
#16 19.47
#16 19.47 init-title:
#16 19.47 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.47
#16 19.47 init-timestamp:
#16 19.47
#16 19.47 init:
#16 19.47
#16 19.47 copy-resources:
#16 19.47 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.47
#16 19.47 compile:
#16 19.74 [resolver:resolve] Resolving artifacts
#16 19.75 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.96 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.96 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 19.96 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 19.96 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 20.86 [javac] /bio-formats-build/bioformats/components/bio-formats-tools/src/loci/formats/tools/ImageInfo.java:370: warning: [deprecation] newInstance() in Class has been deprecated
#16 20.86 [javac] reader = (IFormatReader) c.newInstance();
#16 20.86 [javac] ^
#16 20.86 [javac] where T is a type-variable:
#16 20.86 [javac] T extends Object declared in class Class
#16 21.03 [javac] 5 warnings
#16 21.03
#16 21.03 bio-formats-tools.jar:
#16 21.03 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 21.04 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 21.04 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 21.05 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 21.05 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 21.05 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.06
#16 21.06 deps-tests:
#16 21.06
#16 21.06 jar-tests:
#16 21.15 [echo] isSnapshot = true
#16 21.28
#16 21.28 init-title:
#16 21.28 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.28
#16 21.28 init-timestamp:
#16 21.28
#16 21.28 init:
#16 21.28
#16 21.28 copy-resources:
#16 21.28 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.28
#16 21.28 compile:
#16 21.57 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.64 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.66 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.07 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.50 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.52 [resolver:resolve] Resolving artifacts
#16 22.53 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.56 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.58 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.99 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.36 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.37 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.57 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.57 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 23.57 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 23.57 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:205: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 24.58 [javac] return new Boolean(test.trim()).booleanValue();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:210: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 24.58 [javac] return new Boolean(globalTable.get(HAS_VALID_XML)).booleanValue();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:264: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 24.58 [javac] return new Boolean(currentTable.get(IS_INTERLEAVED)).booleanValue();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:268: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 24.58 [javac] return new Boolean(currentTable.get(IS_INDEXED)).booleanValue();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:272: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 24.58 [javac] return new Boolean(currentTable.get(IS_FALSE_COLOR)).booleanValue();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:276: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 24.58 [javac] return new Boolean(currentTable.get(IS_RGB)).booleanValue();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:292: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal
#16 24.58 [javac] return new Boolean(currentTable.get(IS_LITTLE_ENDIAN)).booleanValue();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:327: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return timeIncrement == null ? null : FormatTools.getTime(new Double(timeIncrement), timeIncrementUnits);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:354: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return exposure == null ? null : FormatTools.getTime(new Double(exposure), exposureUnits);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:363: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return deltaT == null ? null : new Double(deltaT);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:368: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return pos == null ? null : new Double(pos);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:377: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return pos == null ? null : new Double(pos);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:386: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return pos == null ? null : new Double(pos);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:397: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return wavelength == null ? null : FormatTools.getWavelength(new Double(wavelength), emissionUnits);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:408: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.58 [javac] return wavelength == null ? null : FormatTools.getWavelength(new Double(wavelength), excitationUnits);
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.58 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.58 [javac] ^
#16 24.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.58 [javac] reader.setCoreIndex(index);
#16 24.58 [javac] ^
#16 24.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:831: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 24.68 [javac] return physicalSize == null ? null : UnitsLength.create(new Double(physicalSize), unit);
#16 24.68 [javac] ^
#16 24.88 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.88 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.88 [javac] ^
#16 24.88 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.88 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.88 [javac] ^
#16 25.08 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatWriterTest.java:113: warning: [deprecation] newInstance() in Class has been deprecated
#16 25.08 [javac] IFormatWriter w = (IFormatWriter) writers[i].getClass().newInstance();
#16 25.08 [javac] ^
#16 25.08 [javac] where T is a type-variable:
#16 25.08 [javac] T extends Object declared in class Class
#16 25.08 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatWriterTest.java:122: warning: [deprecation] newInstance() in Class has been deprecated
#16 25.08 [javac] IFormatWriter w = (IFormatWriter) writers[i].getClass().newInstance();
#16 25.08 [javac] ^
#16 25.08 [javac] where T is a type-variable:
#16 25.08 [javac] T extends Object declared in class Class
#16 25.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.18 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.18 [javac] ^
#16 25.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.18 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.18 [javac] ^
#16 25.18 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.18 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.18 [javac] 28 warnings
#16 25.22
#16 25.22 tests.jar:
#16 25.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.24 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 25.24 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 25.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 25.25 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.25 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.25
#16 25.25 jars:
#16 25.25
#16 25.25 copy-jars:
#16 25.25
#16 25.25 deps-formats-api:
#16 25.30 [echo] isSnapshot = true
#16 25.34
#16 25.34 install-pom:
#16 25.51 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 25.51 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.52 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.52
#16 25.52 jar-formats-api:
#16 25.60 [echo] isSnapshot = true
#16 25.73
#16 25.73 init-title:
#16 25.73 [echo] ----------=========== formats-api ===========----------
#16 25.73
#16 25.73 init-timestamp:
#16 25.73
#16 25.73 init:
#16 25.73
#16 25.73 copy-resources:
#16 25.73
#16 25.73 compile:
#16 25.86 [resolver:resolve] Resolving artifacts
#16 25.87
#16 25.87 formats-api.jar:
#16 25.89 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 25.89 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 25.89 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 25.89 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.89 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.90
#16 25.90 deps-turbojpeg:
#16 25.90
#16 25.90 jar-turbojpeg:
#16 25.99 [echo] isSnapshot = true
#16 26.11
#16 26.11 init-title:
#16 26.11 [echo] ----------=========== turbojpeg ===========----------
#16 26.11
#16 26.11 init-timestamp:
#16 26.11
#16 26.11 init:
#16 26.11
#16 26.11 copy-resources:
#16 26.11
#16 26.11 compile:
#16 26.12 [resolver:resolve] Resolving artifacts
#16 26.12
#16 26.12 jar:
#16 26.13 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 26.14 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 26.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 26.14 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.14 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 26.14
#16 26.14 deps-formats-bsd:
#16 26.14
#16 26.14 jar-formats-bsd:
#16 26.24 [echo] isSnapshot = true
#16 26.37
#16 26.37 init-title:
#16 26.37 [echo] ----------=========== formats-bsd ===========----------
#16 26.37
#16 26.37 init-timestamp:
#16 26.37
#16 26.37 init:
#16 26.37
#16 26.37 copy-resources:
#16 26.37
#16 26.37 compile:
#16 26.58 [resolver:resolve] Resolving artifacts
#16 26.60
#16 26.60 formats-bsd.jar:
#16 26.64 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.64 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.64 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.64
#16 26.64 deps-formats-gpl:
#16 26.64
#16 26.64 jar-formats-gpl:
#16 26.73 [echo] isSnapshot = true
#16 26.85
#16 26.85 init-title:
#16 26.85 [echo] ----------=========== formats-gpl ===========----------
#16 26.85
#16 26.85 init-timestamp:
#16 26.85
#16 26.85 init:
#16 26.85
#16 26.85 copy-resources:
#16 26.85
#16 26.85 compile:
#16 27.08 [resolver:resolve] Resolving artifacts
#16 27.10
#16 27.10 formats-gpl.jar:
#16 27.14 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 27.14 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.14 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.15
#16 27.15 deps-bio-formats-plugins:
#16 27.15
#16 27.15 jar-bio-formats-plugins:
#16 27.23 [echo] isSnapshot = true
#16 27.36
#16 27.36 init-title:
#16 27.36 [echo] ----------=========== bio-formats_plugins ===========----------
#16 27.36
#16 27.36 init-timestamp:
#16 27.36
#16 27.36 init:
#16 27.36
#16 27.36 copy-resources:
#16 27.36
#16 27.36 compile:
#16 27.60 [resolver:resolve] Resolving artifacts
#16 27.61
#16 27.61 bio-formats-plugins.jar:
#16 27.62 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.63 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.63 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.63 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.63
#16 27.63 deps-bio-formats-tools:
#16 27.63
#16 27.63 jar-bio-formats-tools:
#16 27.72 [echo] isSnapshot = true
#16 27.84
#16 27.84 init-title:
#16 27.84 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.84
#16 27.84 init-timestamp:
#16 27.84
#16 27.84 init:
#16 27.84
#16 27.84 copy-resources:
#16 27.84
#16 27.84 compile:
#16 28.08 [resolver:resolve] Resolving artifacts
#16 28.09
#16 28.09 bio-formats-tools.jar:
#16 28.09 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 28.10 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 28.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 28.10 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.10 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.10
#16 28.10 deps-tests:
#16 28.10
#16 28.10 jar-tests:
#16 28.19 [echo] isSnapshot = true
#16 28.39
#16 28.39 init-title:
#16 28.39 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.39
#16 28.39 init-timestamp:
#16 28.39
#16 28.39 init:
#16 28.39
#16 28.39 copy-resources:
#16 28.39
#16 28.39 compile:
#16 28.63 [resolver:resolve] Resolving artifacts
#16 28.64
#16 28.64 tests.jar:
#16 28.65 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.65 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.65 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.66 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.66
#16 28.66 jars:
#16 28.66
#16 28.66 tools:
#16 28.66 [echo] ----------=========== bioformats_package ===========----------
#16 28.74 [echo] isSnapshot = true
#16 28.88
#16 28.88 init-timestamp:
#16 28.88
#16 28.88 bundle:
#16 29.14 [resolver:resolve] Resolving artifacts
#16 29.15 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.20 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.24 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.30 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.37 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.38 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.62 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.67 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.69 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.75 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.76 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.77 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.78 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.96 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.57 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.64 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.70 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.71 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.87 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.90 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.99 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.07 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.54 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.56 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.66 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.77 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.81 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.82 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.05 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.13 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.19 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.29 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.3-SNAPSHOT/ome-mdbtools-5.3.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.7-SNAPSHOT/metakit-5.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.9-SNAPSHOT/ome-poi-5.3.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.44 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.91 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.03 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.09 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.10 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.27 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.28 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.29 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.30 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.31 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.34 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.76 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.88 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.24 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.96 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.54 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 40.55 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 40.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 40.61 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.62 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.62
#16 40.62 BUILD SUCCESSFUL
#16 40.62 Total time: 40 seconds
#16 DONE 40.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.6s done
#18 writing image sha256:a81f7201d3e77d83c56cfd1399b0b0a790a4b6b224205e07e0e3a8c63b9c2aeb done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.6s
Finished: SUCCESS
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