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#14 348.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.jar
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#14 348.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar (9.9 kB at 155 kB/s)
#14 348.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.7/maven-repository-metadata-2.0.7.jar
#14 348.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar
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#14 348.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/2.5/maven-archiver-2.5.jar
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#14 348.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar
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#14 349.0 Progress (4): 57 kB | 10 kB | 22 kB | 111/184 kB
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#14 349.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/2.1/maven-dependency-tree-2.1.jar
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#14 349.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar
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#14 349.0 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/2.1/maven-dependency-tree-2.1.jar (60 kB at 357 kB/s)
#14 349.0 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar (231 kB at 1.3 MB/s)
#14 349.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.pom
#14 349.2 Progress (1): 4.1 kB
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#14 349.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-providers/3.5.2/wagon-providers-3.5.2.pom
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#14 349.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon/3.5.2/wagon-3.5.2.pom
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#14 349.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.pom
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#14 349.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity-api/1.1/plexus-interactivity-api-1.1.pom
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#14 349.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity/1.1/plexus-interactivity-1.1.pom
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#14 351.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-maven/2.15.1-02/nexus-buildsupport-maven-2.15.1-02.pom
#14 351.5 Progress (1): 3.8/7.1 kB
Progress (1): 7.1 kB
Downloaded from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-maven/2.15.1-02/nexus-buildsupport-maven-2.15.1-02.pom (7.1 kB at 38 kB/s)
#14 351.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-messaging/2.15.1-02/nexus-buildsupport-messaging-2.15.1-02.pom
#14 351.6 Progress (1): 4.1/6.1 kB
Progress (1): 6.1 kB
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#14 351.7 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-shiro/2.15.1-02/nexus-buildsupport-shiro-2.15.1-02.pom
#14 351.8 Progress (1): 3.4 kB
Downloaded from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-shiro/2.15.1-02/nexus-buildsupport-shiro-2.15.1-02.pom (3.4 kB at 19 kB/s)
#14 351.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.15.1-02/nexus-buildsupport-bouncycastle-2.15.1-02.pom
#14 352.0 Progress (1): 2.3 kB
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#14 352.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-jetty/2.15.1-02/nexus-buildsupport-jetty-2.15.1-02.pom
#14 352.2 Progress (1): 4.1/4.6 kB
Progress (1): 4.6 kB
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#14 352.3 [output clipped, log limit 2MiB reached]
#14 423.6 SLF4J: No SLF4J providers were found.
#14 423.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 423.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 434.9s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.333 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.686 [echo] isSnapshot = true
#16 0.789
#16 0.789 copy-jars:
#16 0.789
#16 0.789 deps-formats-api:
#16 0.870 [echo] isSnapshot = true
#16 0.929
#16 0.929 install-pom:
#16 1.131 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 1.142 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 1.148 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.150
#16 1.150 jar-formats-api:
#16 1.298 [echo] isSnapshot = true
#16 1.499
#16 1.499 init-title:
#16 1.500 [echo] ----------=========== formats-api ===========----------
#16 1.500
#16 1.500 init-timestamp:
#16 1.504
#16 1.504 init:
#16 1.504
#16 1.504 copy-resources:
#16 1.505 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.521 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.524
#16 1.524 compile:
#16 1.734 [resolver:resolve] Resolving artifacts
#16 1.777 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.455 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.455 [javac] import loci.common.ReflectedUniverse;
#16 2.455 [javac] ^
#16 2.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.555 [javac] int currentIndex = r.getCoreIndex();
#16 2.555 [javac] ^
#16 2.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.555 [javac] r.setCoreIndex(coreIndex);
#16 2.555 [javac] ^
#16 2.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.555 [javac] r.setCoreIndex(currentIndex);
#16 2.556 [javac] ^
#16 2.756 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.756 [javac] public void setCoreIndex(int no) {
#16 2.756 [javac] ^
#16 2.756 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.756 [javac] public int getCoreIndex() {
#16 2.756 [javac] ^
#16 2.756 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.756 [javac] public int coreIndexToSeries(int index)
#16 2.756 [javac] ^
#16 2.757 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.757 [javac] public int seriesToCoreIndex(int series)
#16 2.757 [javac] ^
#16 2.757 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.757 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 2.757 [javac] ^
#16 2.857 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.857 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 2.857 [javac] ^
#16 2.857 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.858 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 2.858 [javac] ^
#16 2.858 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.858 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 2.858 [javac] ^
#16 2.858 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.858 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 2.858 [javac] ^
#16 2.958 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.958 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 2.958 [javac] ^
#16 2.958 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.959 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 2.959 [javac] ^
#16 2.959 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.959 [javac] public void setCoreIndex(int no) {
#16 2.959 [javac] ^
#16 2.959 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.959 [javac] public int getCoreIndex() {
#16 2.959 [javac] ^
#16 2.959 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.959 [javac] public int coreIndexToSeries(int index) {
#16 2.959 [javac] ^
#16 2.959 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.959 [javac] public int seriesToCoreIndex(int series) {
#16 2.959 [javac] ^
#16 2.959 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.960 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 2.960 [javac] ^
#16 3.060 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:589: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.060 [javac] return getReader().getCoreMetadataList();
#16 3.061 [javac] ^
#16 3.061 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:769: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.061 [javac] return getReader().getCoreIndex();
#16 3.061 [javac] ^
#16 3.061 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:775: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.061 [javac] getReader().setCoreIndex(no);
#16 3.061 [javac] ^
#16 3.061 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:780: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.061 [javac] return getReader().seriesToCoreIndex(series);
#16 3.061 [javac] ^
#16 3.062 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.062 [javac] return getReader().coreIndexToSeries(index);
#16 3.062 [javac] ^
#16 3.062 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.062 [javac] public void setCoreIndex(int no) {
#16 3.062 [javac] ^
#16 3.062 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.062 [javac] public int getCoreIndex() {
#16 3.062 [javac] ^
#16 3.062 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.062 [javac] public int coreIndexToSeries(int index) {
#16 3.062 [javac] ^
#16 3.062 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.062 [javac] public int seriesToCoreIndex(int series) {
#16 3.062 [javac] ^
#16 3.063 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.063 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.063 [javac] ^
#16 3.063 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.063 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.063 [javac] ^
#16 3.063 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.063 [javac] return reader.getCoreIndex();
#16 3.063 [javac] ^
#16 3.063 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.063 [javac] reader.setCoreIndex(no);
#16 3.063 [javac] ^
#16 3.063 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.063 [javac] return reader.seriesToCoreIndex(series);
#16 3.063 [javac] ^
#16 3.063 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.063 [javac] return reader.coreIndexToSeries(index);
#16 3.063 [javac] ^
#16 3.259 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.259 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.259 [javac] 35 warnings
#16 3.260
#16 3.260 formats-api.jar:
#16 3.260 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.287 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.322 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 3.326 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 3.335 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 3.337 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.339 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.340
#16 3.340 deps-turbojpeg:
#16 3.340
#16 3.340 jar-turbojpeg:
#16 3.456 [echo] isSnapshot = true
#16 3.642
#16 3.642 init-title:
#16 3.642 [echo] ----------=========== turbojpeg ===========----------
#16 3.642
#16 3.642 init-timestamp:
#16 3.643
#16 3.643 init:
#16 3.643
#16 3.643 copy-resources:
#16 3.643 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.644
#16 3.644 compile:
#16 3.657 [resolver:resolve] Resolving artifacts
#16 3.661 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.373
#16 4.373 jar:
#16 4.379 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.569 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 4.578 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 4.584 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 4.586 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.590 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.591
#16 4.591 deps-formats-bsd:
#16 4.591
#16 4.591 jar-formats-bsd:
#16 4.699 [echo] isSnapshot = true
#16 4.883
#16 4.883 init-title:
#16 4.883 [echo] ----------=========== formats-bsd ===========----------
#16 4.883
#16 4.883 init-timestamp:
#16 4.884
#16 4.884 init:
#16 4.884
#16 4.884 copy-resources:
#16 4.884 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 4.889 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 4.890
#16 4.890 compile:
#16 5.135 [resolver:resolve] Resolving artifacts
#16 5.175 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.286 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.286 [javac] import loci.common.ReflectedUniverse;
#16 6.286 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.687 [javac] core.size() != reader.getCoreMetadataList().size())
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.687 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.687 [javac] int n = reader.getCoreMetadataList().size();
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.687 [javac] reader.setCoreIndex(coreIndex);
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.687 [javac] int n = reader.getCoreMetadataList().size();
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.687 [javac] int n = reader.getCoreMetadataList().size();
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.687 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.687 [javac] int n = reader.getCoreMetadataList().size();
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.687 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.687 [javac] ^
#16 6.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.687 [javac] int n = reader.getCoreMetadataList().size();
#16 6.687 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.688 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.688 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.688 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.688 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.688 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.688 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.688 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.688 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.688 [javac] ^
#16 6.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.688 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.688 [javac] ^
#16 6.789 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.789 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 6.789 [javac] ^
#16 6.889 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.889 [javac] BitWriter out = new BitWriter();
#16 6.889 [javac] ^
#16 6.889 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.889 [javac] BitWriter out = new BitWriter();
#16 6.889 [javac] ^
#16 7.890 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.890 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 7.890 [javac] ^
#16 7.890 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 7.890 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 7.890 [javac] ^
#16 7.990 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.990 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 7.990 [javac] ^
#16 7.990 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.990 [javac] protected ReflectedUniverse r;
#16 7.990 [javac] ^
#16 7.991 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.991 [javac] r = new ReflectedUniverse();
#16 7.991 [javac] ^
#16 8.091 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 8.091 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.091 [javac] ^
#16 8.091 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 8.091 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.091 [javac] ^
#16 8.091 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 8.091 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.091 [javac] ^
#16 8.091 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 8.091 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.091 [javac] ^
#16 8.091 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 8.092 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.092 [javac] ^
#16 8.092 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 8.092 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.092 [javac] ^
#16 8.092 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 8.092 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.092 [javac] ^
#16 8.092 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 8.092 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.092 [javac] ^
#16 8.092 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.092 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.092 [javac] ^
#16 8.193 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.193 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.193 [javac] ^
#16 8.193 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.193 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.193 [javac] 38 warnings
#16 8.430
#16 8.430 formats-bsd.jar:
#16 8.442 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.561 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 8.565 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 8.573 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 8.575 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 8.577 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.578
#16 8.578 deps-formats-gpl:
#16 8.578
#16 8.578 jar-formats-gpl:
#16 8.681 [echo] isSnapshot = true
#16 8.867
#16 8.867 init-title:
#16 8.867 [echo] ----------=========== formats-gpl ===========----------
#16 8.867
#16 8.867 init-timestamp:
#16 8.867
#16 8.867 init:
#16 8.867
#16 8.867 copy-resources:
#16 8.867 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.869 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.869
#16 8.869 compile:
#16 9.395 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.639 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.678 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.25 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.27 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.29 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.42 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.49 [resolver:resolve] Resolving artifacts
#16 10.50 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.50 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.56 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.56 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.59 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.59 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.00 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.00 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.02 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.32 [javac] import loci.formats.codec.BitWriter;
#16 12.32 [javac] ^
#16 12.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.32 [javac] import loci.formats.codec.BitWriter;
#16 12.32 [javac] ^
#16 14.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.13 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.13 [javac] ^
#16 14.13 [javac] cast to Object for a varargs call
#16 14.13 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:398: warning: [deprecation] NM in UNITS has been deprecated
#16 14.13 [javac] final Length offsetX = new Length(i.vOffsetX, UNITS.NM);
#16 14.13 [javac] ^
#16 14.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:399: warning: [deprecation] NM in UNITS has been deprecated
#16 14.13 [javac] final Length offsetY = new Length(i.vOffsetY, UNITS.NM);
#16 14.13 [javac] ^
#16 14.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.13 [javac] BitWriter bits = null;
#16 14.13 [javac] ^
#16 14.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.13 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.13 [javac] ^
#16 14.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:692: warning: [deprecation] MM in UNITS has been deprecated
#16 14.23 [javac] Length yPos = FormatTools.getStagePosition(physicalDistanceFromTopEdge, UNITS.MM);
#16 14.23 [javac] ^
#16 14.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:698: warning: [deprecation] MM in UNITS has been deprecated
#16 14.23 [javac] Length xPos = FormatTools.getStagePosition(physicalDistanceFromLeftEdge, UNITS.MM);
#16 14.23 [javac] ^
#16 14.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.43 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.43 [javac] ^
#16 14.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:298: warning: [deprecation] NM in UNITS has been deprecated
#16 14.43 [javac] int actualWidth = (int) (stitchedWidth / physicalSizeX.value(UNITS.NM).doubleValue());
#16 14.43 [javac] ^
#16 14.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:299: warning: [deprecation] NM in UNITS has been deprecated
#16 14.43 [javac] int actualHeight = (int) (stitchedHeight / physicalSizeY.value(UNITS.NM).doubleValue());
#16 14.43 [javac] ^
#16 14.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OperettaReader.java:1202: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 14.43 [javac] protected AcquisitionMode getAcquisitionMode(String mode) throws FormatException {
#16 14.43 [javac] ^
#16 14.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.73 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.73 [javac] ^
#16 14.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.73 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.73 [javac] ^
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.03 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.03 [javac] ^
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.03 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 15.03 [javac] ^
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.03 [javac] String groupName = group.getName();
#16 15.03 [javac] ^
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.03 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.03 [javac] ^
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.03 [javac] String attributeName = attribute.getName();
#16 15.03 [javac] ^
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.03 [javac] String variableName = variable.getName();
#16 15.03 [javac] ^
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 15.03 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 15.03 [javac] ^
#16 15.03 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.03 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.03 [javac] 22 warnings
#16 15.13
#16 15.13 formats-gpl.jar:
#16 15.14 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.28 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 15.29 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 15.30 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 15.30 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 15.30 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.30
#16 15.30 deps-bio-formats-plugins:
#16 15.30
#16 15.30 jar-bio-formats-plugins:
#16 15.40 [echo] isSnapshot = true
#16 15.58
#16 15.58 init-title:
#16 15.58 [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.58
#16 15.58 init-timestamp:
#16 15.58
#16 15.58 init:
#16 15.58
#16 15.58 copy-resources:
#16 15.58 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.58 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.58
#16 15.58 compile:
#16 15.83 [resolver:resolve] Resolving artifacts
#16 15.85 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.66 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.66 [javac] import loci.common.ReflectedUniverse;
#16 16.66 [javac] ^
#16 16.66 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.66 [javac] import loci.common.ReflectedUniverse;
#16 16.66 [javac] ^
#16 17.06 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.06 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.06 [javac] ^
#16 17.16 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.16 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.16 [javac] ^
#16 17.16 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.16 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.16 [javac] ^
#16 17.26 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.26 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.26 [javac] ^
#16 17.26 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.26 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.26 [javac] ^
#16 17.55 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 17.55 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.55 [javac] 7 warnings
#16 17.55
#16 17.55 bio-formats-plugins.jar:
#16 17.55 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 17.59 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 17.59 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 17.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 17.60 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.61 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 17.61
#16 17.61 deps-bio-formats-tools:
#16 17.61
#16 17.61 jar-bio-formats-tools:
#16 17.71 [echo] isSnapshot = true
#16 17.88
#16 17.88 init-title:
#16 17.88 [echo] ----------=========== bio-formats-tools ===========----------
#16 17.88
#16 17.88 init-timestamp:
#16 17.88
#16 17.88 init:
#16 17.88
#16 17.88 copy-resources:
#16 17.88 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.88
#16 17.88 compile:
#16 18.14 [resolver:resolve] Resolving artifacts
#16 18.15 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.19
#16 19.19 bio-formats-tools.jar:
#16 19.19 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 19.20 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 19.20 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 19.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 19.22 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.22 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 19.22
#16 19.22 deps-tests:
#16 19.22
#16 19.22 jar-tests:
#16 19.32 [echo] isSnapshot = true
#16 19.51
#16 19.51 init-title:
#16 19.51 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 19.51
#16 19.51 init-timestamp:
#16 19.51
#16 19.51 init:
#16 19.51
#16 19.51 copy-resources:
#16 19.51 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 19.51
#16 19.51 compile:
#16 19.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.95 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.97 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.39 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.81 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 20.84 [resolver:resolve] Resolving artifacts
#16 20.85 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.89 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.91 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.32 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.70 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 21.70 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.62 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.62 [javac] int index = unflattenedReader.getCoreIndex();
#16 22.62 [javac] ^
#16 22.62 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 22.62 [javac] reader.setCoreIndex(index);
#16 22.62 [javac] ^
#16 22.82 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.82 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.82 [javac] ^
#16 22.82 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.82 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.82 [javac] ^
#16 23.02 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.02 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 23.02 [javac] ^
#16 23.02 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.02 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 23.02 [javac] ^
#16 23.12 [javac] Note: Some input files use unchecked or unsafe operations.
#16 23.12 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 23.12 [javac] 6 warnings
#16 23.12
#16 23.12 tests.jar:
#16 23.13 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 23.14 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 23.15 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 23.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 23.16 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.16 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 23.16
#16 23.16 jars:
#16 23.16
#16 23.16 copy-jars:
#16 23.16
#16 23.16 deps-formats-api:
#16 23.22 [echo] isSnapshot = true
#16 23.27
#16 23.27 install-pom:
#16 23.45 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 23.45 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.45 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 23.46
#16 23.46 jar-formats-api:
#16 23.55 [echo] isSnapshot = true
#16 23.74
#16 23.74 init-title:
#16 23.74 [echo] ----------=========== formats-api ===========----------
#16 23.74
#16 23.74 init-timestamp:
#16 23.74
#16 23.74 init:
#16 23.74
#16 23.74 copy-resources:
#16 23.74
#16 23.74 compile:
#16 23.91 [resolver:resolve] Resolving artifacts
#16 23.92
#16 23.92 formats-api.jar:
#16 23.94 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 23.94 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 23.94 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 23.95 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.95 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 23.95
#16 23.95 deps-turbojpeg:
#16 23.95
#16 23.95 jar-turbojpeg:
#16 24.22 [echo] isSnapshot = true
#16 24.40
#16 24.40 init-title:
#16 24.40 [echo] ----------=========== turbojpeg ===========----------
#16 24.40
#16 24.40 init-timestamp:
#16 24.40
#16 24.40 init:
#16 24.40
#16 24.40 copy-resources:
#16 24.40
#16 24.40 compile:
#16 24.41 [resolver:resolve] Resolving artifacts
#16 24.41
#16 24.41 jar:
#16 24.41 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 24.42 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 24.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 24.43 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.43 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 24.43
#16 24.43 deps-formats-bsd:
#16 24.43
#16 24.43 jar-formats-bsd:
#16 24.52 [echo] isSnapshot = true
#16 24.70
#16 24.70 init-title:
#16 24.70 [echo] ----------=========== formats-bsd ===========----------
#16 24.70
#16 24.70 init-timestamp:
#16 24.70
#16 24.70 init:
#16 24.70
#16 24.70 copy-resources:
#16 24.70
#16 24.70 compile:
#16 24.90 [resolver:resolve] Resolving artifacts
#16 24.91
#16 24.91 formats-bsd.jar:
#16 24.95 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 24.95 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 24.96 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 24.96 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.96 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 24.96
#16 24.96 deps-formats-gpl:
#16 24.96
#16 24.96 jar-formats-gpl:
#16 25.05 [echo] isSnapshot = true
#16 25.23
#16 25.23 init-title:
#16 25.23 [echo] ----------=========== formats-gpl ===========----------
#16 25.23
#16 25.23 init-timestamp:
#16 25.23
#16 25.23 init:
#16 25.23
#16 25.23 copy-resources:
#16 25.23
#16 25.23 compile:
#16 25.47 [resolver:resolve] Resolving artifacts
#16 25.49
#16 25.49 formats-gpl.jar:
#16 25.54 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 25.54 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 25.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 25.54 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.54 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 25.54
#16 25.54 deps-bio-formats-plugins:
#16 25.54
#16 25.54 jar-bio-formats-plugins:
#16 25.64 [echo] isSnapshot = true
#16 25.82
#16 25.82 init-title:
#16 25.82 [echo] ----------=========== bio-formats_plugins ===========----------
#16 25.82
#16 25.82 init-timestamp:
#16 25.82
#16 25.82 init:
#16 25.82
#16 25.82 copy-resources:
#16 25.82
#16 25.82 compile:
#16 26.08 [resolver:resolve] Resolving artifacts
#16 26.09
#16 26.09 bio-formats-plugins.jar:
#16 26.11 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 26.11 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 26.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 26.11 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.11 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 26.12
#16 26.12 deps-bio-formats-tools:
#16 26.12
#16 26.12 jar-bio-formats-tools:
#16 26.21 [echo] isSnapshot = true
#16 26.39
#16 26.39 init-title:
#16 26.39 [echo] ----------=========== bio-formats-tools ===========----------
#16 26.39
#16 26.39 init-timestamp:
#16 26.39
#16 26.39 init:
#16 26.39
#16 26.39 copy-resources:
#16 26.40
#16 26.40 compile:
#16 26.65 [resolver:resolve] Resolving artifacts
#16 26.66
#16 26.66 bio-formats-tools.jar:
#16 26.67 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 26.67 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 26.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 26.67 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.68 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 26.68
#16 26.68 deps-tests:
#16 26.68
#16 26.68 jar-tests:
#16 26.77 [echo] isSnapshot = true
#16 26.96
#16 26.96 init-title:
#16 26.96 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 26.96
#16 26.96 init-timestamp:
#16 26.96
#16 26.96 init:
#16 26.96
#16 26.96 copy-resources:
#16 26.96
#16 26.96 compile:
#16 27.24 [resolver:resolve] Resolving artifacts
#16 27.25
#16 27.25 tests.jar:
#16 27.26 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 27.27 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 27.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 27.27 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.27 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.28
#16 27.28 jars:
#16 27.28
#16 27.28 tools:
#16 27.28 [echo] ----------=========== bioformats_package ===========----------
#16 27.38 [echo] isSnapshot = true
#16 27.58
#16 27.58 init-timestamp:
#16 27.58
#16 27.58 bundle:
#16 27.86 [resolver:resolve] Resolving artifacts
#16 27.87 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.90 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.93 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.95 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.96 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.03 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.04 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.10 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.11 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.35 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.41 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.42 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.49 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.50 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.51 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.51 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.70 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.21 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.22 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.22 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.33 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.45 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.46 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.62 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.64 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.72 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.76 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.76 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.82 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.30 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.33 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.52 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.53 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.55 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.56 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.87 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.95 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.00 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.3-SNAPSHOT/ome-mdbtools-5.3.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.12 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.7-SNAPSHOT/metakit-5.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.12 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.9-SNAPSHOT/ome-poi-5.3.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.73 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.90 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.90 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.91 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.07 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.09 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.10 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.14 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.54 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.97 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.79 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.55 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 39.56 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 39.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 39.63 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.63 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.64
#16 39.64 BUILD SUCCESSFUL
#16 39.64 Total time: 39 seconds
#16 DONE 39.8s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:86d941bc5ee02a4f465609677669d1c0bd602b937010906648e1bfafc815b5a0 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.3s
Finished: SUCCESS
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