01:59:14 Started by upstream project "Trigger" build number 120
01:59:14 originally caused by:
01:59:14 Started by timer
01:59:14 Running as SYSTEM
01:59:14 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:59:14 [OMERO-server] $ /bin/bash -xe /tmp/jenkins779907600357350290.sh
01:59:15 + source /home/settings.env
01:59:15 ++ OMERO_DB_HOST=pg
01:59:15 ++ OMERO_DB_USER=postgres
01:59:15 ++ OMERO_DB_PASS=
01:59:15 ++ OMERO_ROOT_PASS=omero
01:59:15 ++ OMERO_DATA_DIR=/OMERO
01:59:15 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:59:15 + OMERO_DB_NAME=OMERO-server
01:59:15 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:59:15 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:59:15 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:59:15 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:59:15 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:59:15 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:59:15 ++ deactivate nondestructive
01:59:15 ++ '[' -n '' ']'
01:59:15 ++ '[' -n '' ']'
01:59:15 ++ '[' -n /bin/bash -o -n '' ']'
01:59:15 ++ hash -r
01:59:15 ++ '[' -n '' ']'
01:59:15 ++ unset VIRTUAL_ENV
01:59:15 ++ '[' '!' nondestructive = nondestructive ']'
01:59:15 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:59:15 ++ export VIRTUAL_ENV
01:59:15 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:59:15 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:59:15 ++ export PATH
01:59:15 ++ '[' -n '' ']'
01:59:15 ++ '[' -z '' ']'
01:59:15 ++ _OLD_VIRTUAL_PS1=
01:59:15 ++ PS1='(.venv3) '
01:59:15 ++ export PS1
01:59:15 ++ '[' -n /bin/bash -o -n '' ']'
01:59:15 ++ hash -r
01:59:15 + omero admin stop
01:59:22 Waiting on shutdown. Use CTRL-C to exit
01:59:22 .+ sleep 5
01:59:38 + deactivate
01:59:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:59:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:59:38 + export PATH
01:59:38 + unset _OLD_VIRTUAL_PATH
01:59:38 + '[' -n '' ']'
01:59:38 + '[' -n /bin/bash -o -n '' ']'
01:59:38 + hash -r
01:59:38 + '[' -n '' ']'
01:59:38 + unset VIRTUAL_ENV
01:59:38 + '[' '!' '' = nondestructive ']'
01:59:38 + unset -f deactivate
01:59:38 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:59:39 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
01:59:44 + '[' false = true ']'
01:59:44 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:59:44 Skipping PURGE_DATA:CleanDbAndRepo
01:59:44 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.4.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:59:46 Copied 1 artifact from "OMERO-build" build number 107
01:59:47 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 106
01:59:47 Copied 2 artifacts from "OMERO-build-build" build number 107
01:59:47 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5101054134743623390.sh
01:59:47 + source /home/settings.env
01:59:47 ++ OMERO_DB_HOST=pg
01:59:47 ++ OMERO_DB_USER=postgres
01:59:47 ++ OMERO_DB_PASS=
01:59:47 ++ OMERO_ROOT_PASS=omero
01:59:47 ++ OMERO_DATA_DIR=/OMERO
01:59:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:59:47 + OMERO_DB_NAME=OMERO-server
01:59:47 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:59:47 + mkdir -p /home/omero/omero-server-data
01:59:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:59:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:59:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:59:47 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:59:47 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:59:47 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:59:47 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:59:47 ++ ls OMERO.server-5.6.3-475-99dd296a2f-ice36.zip
01:59:47 + ZIP=OMERO.server-5.6.3-475-99dd296a2f-ice36.zip
01:59:47 + '[' '!' -z '' ']'
01:59:47 + DIST=OMERO.server-5.6.3-475-99dd296a2f-ice36
01:59:47 + unzip OMERO.server-5.6.3-475-99dd296a2f-ice36.zip
01:59:47 Archive: OMERO.server-5.6.3-475-99dd296a2f-ice36.zip
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/blitz/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/grid/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/profiles/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/error/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/grid/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/luts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/luts/janelia/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/luts/ncsa_paledit/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/luts/wcif/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/omero/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/omero/analysis_scripts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/omero/annotation_scripts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/omero/export_scripts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/omero/figure_scripts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/omero/import_scripts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/scripts/omero/util_scripts/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/server/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/share/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/share/licenses/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/misc/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__1/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__10/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__11/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__2/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__3/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__4/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__5/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__6/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__7/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__8/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3A__9/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3__4/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3__5/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3__6/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO3__7/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4.1__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4.2__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4.2__0/t/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4.3__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4.4__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.0__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.1__1/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.2__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.3__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4DEV__1/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4DEV__2/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4DEV__3/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/
01:59:47 creating: OMERO.server-5.6.3-475-99dd296a2f-ice36/var/
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/LICENSE.txt
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/backup.cfg
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/blitz/mail-senders.example
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/blitz/mail-server.example
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/build.properties
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/env.bat
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/env.sh
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/hibernate.properties
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/ice.config
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/logback-cli.xml
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/logback-indexing-cli.xml
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/logback-indexing.xml
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/logback.xml
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/mime.types
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/node1.cfg
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/node2.cfg
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/omero.properties
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/profiles/psql
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/rollover.cfg
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/Windows.cfg
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/error/maintainance.html
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/grid/README
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/grid/default.xml
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/grid/templates.xml
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/grid/windefault.xml
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/ice.config
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/internal.cfg
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/master.cfg
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/templates/robot.template
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/etc/testdropbox.config
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/history.rst
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/OMEZarrReader.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/activation.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/aggdesigner-algorithm.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/aircompressor.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/annotations.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/antlr.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/aopalliance.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/avatica-core.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/avatica-metrics.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/aws-java-sdk-core.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/aws-java-sdk-kms.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/aws-java-sdk-s3.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/base.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-all.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-anim.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-awt-util.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-bridge.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-codec.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-constants.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-css.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-dom.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-ext.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-extension.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-gui-util.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-gvt.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-i18n.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-parser.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-rasterizer-ext.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-rasterizer.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-script.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-slideshow.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-squiggle-ext.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-squiggle.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-svg-dom.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-svgbrowser.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-svggen.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-svgpp.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-svgrasterizer.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-swing.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-transcoder.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-ttf2svg.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-util.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/batik-xml.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/btm.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/bufr.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/byte-buddy-agent.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/byte-buddy.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/c3p0.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/calcite-core.jar
01:59:47 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/lib/client/calcite-linq4j.jar
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01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/share/licenses/postgresql.txt
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01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/README.txt
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01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
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01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
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01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
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01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
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01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/schema.sql
01:59:50 inflating: OMERO.server-5.6.3-475-99dd296a2f-ice36/sql/psql/OMERO5.4__0/views.sql
01:59:50 + rm -f OMERO.server-5.6.3-475-99dd296a2f-ice36.zip
01:59:50 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-475-99dd296a2f-ice36 /home/omero/workspace/OMERO-server/OMERO.server
01:59:50 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:59:50 ++ deactivate nondestructive
01:59:50 ++ '[' -n '' ']'
01:59:50 ++ '[' -n '' ']'
01:59:50 ++ '[' -n /bin/bash -o -n '' ']'
01:59:50 ++ hash -r
01:59:50 ++ '[' -n '' ']'
01:59:50 ++ unset VIRTUAL_ENV
01:59:50 ++ '[' '!' nondestructive = nondestructive ']'
01:59:50 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:59:50 ++ export VIRTUAL_ENV
01:59:50 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:59:50 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:59:50 ++ export PATH
01:59:50 ++ '[' -n '' ']'
01:59:50 ++ '[' -z '' ']'
01:59:50 ++ _OLD_VIRTUAL_PS1=
01:59:50 ++ PS1='(.venv3) '
01:59:50 ++ export PS1
01:59:50 ++ '[' -n /bin/bash -o -n '' ']'
01:59:50 ++ hash -r
01:59:50 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
01:59:51 Collecting zeroc-ice==3.6.5
01:59:51 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:59:53 Installing collected packages: zeroc-ice
01:59:54 Successfully installed zeroc-ice-3.6.5
01:59:54 + pip install -U pip future
01:59:54 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
01:59:55 Collecting pip
01:59:55 Using cached pip-24.1.1-py3-none-any.whl (1.8 MB)
01:59:55 Collecting future
01:59:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:59:55 Installing collected packages: pip, future
01:59:55 Attempting uninstall: pip
01:59:55 Found existing installation: pip 21.2.3
01:59:55 Uninstalling pip-21.2.3:
01:59:55 Successfully uninstalled pip-21.2.3
01:59:57 Successfully installed future-1.0.0 pip-24.1.1
01:59:57 + pip install markdown
01:59:57 Collecting markdown
01:59:58 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
01:59:58 Collecting importlib-metadata>=4.4 (from markdown)
01:59:58 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB)
01:59:58 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
01:59:58 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
01:59:58 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
01:59:58 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB)
01:59:58 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB)
01:59:58 Installing collected packages: zipp, importlib-metadata, markdown
01:59:59 Successfully installed importlib-metadata-8.0.0 markdown-3.6 zipp-3.19.2
01:59:59 + pip install reportlab
01:59:59 Collecting reportlab
02:00:00 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
02:00:00 Collecting pillow>=9.0.0 (from reportlab)
02:00:00 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
02:00:00 Collecting chardet (from reportlab)
02:00:00 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
02:00:00 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
02:00:00 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
02:00:00 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
02:00:00 Installing collected packages: pillow, chardet, reportlab
02:00:02 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.2
02:00:02 + pip install omego
02:00:02 Collecting omego
02:00:02 Using cached omego-0.7.0-py3-none-any.whl
02:00:02 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
02:00:03 Collecting yaclifw>=0.1.1 (from omego)
02:00:03 Using cached yaclifw-0.2.0-py3-none-any.whl
02:00:03 Collecting six (from yaclifw>=0.1.1->omego)
02:00:03 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
02:00:03 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
02:00:03 Installing collected packages: six, yaclifw, omego
02:00:03 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
02:00:03 + pip install tables
02:00:03 Collecting tables
02:00:03 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
02:00:04 Collecting numpy>=1.19.0 (from tables)
02:00:04 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
02:00:04 Collecting numexpr>=2.6.2 (from tables)
02:00:04 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
02:00:04 Collecting packaging (from tables)
02:00:04 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
02:00:04 Collecting py-cpuinfo (from tables)
02:00:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
02:00:05 Collecting blosc2>=2.3.0 (from tables)
02:00:05 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
02:00:05 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
02:00:05 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
02:00:05 Collecting msgpack (from blosc2>=2.3.0->tables)
02:00:05 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
02:00:05 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
02:00:05 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
02:00:05 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
02:00:05 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB)
02:00:05 Using cached packaging-24.1-py3-none-any.whl (53 kB)
02:00:05 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
02:00:05 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
02:00:05 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
02:00:06 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
02:00:09 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.0 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
02:00:09 + pip install jinja2
02:00:10 Collecting jinja2
02:00:10 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
02:00:10 Collecting MarkupSafe>=2.0 (from jinja2)
02:00:10 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
02:00:10 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
02:00:11 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
02:00:11 Installing collected packages: MarkupSafe, jinja2
02:00:11 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
02:00:11 + pip install omero-py
02:00:12 Collecting omero-py
02:00:12 Using cached omero_py-5.19.3-py3-none-any.whl.metadata (6.3 kB)
02:00:12 Collecting urllib3<2 (from omero-py)
02:00:12 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
02:00:13 Collecting appdirs (from omero-py)
02:00:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
02:00:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
02:00:14 Collecting numpy<2 (from omero-py)
02:00:14 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
02:00:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0)
02:00:14 Collecting PyYAML (from omero-py)
02:00:14 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
02:00:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
02:00:14 Collecting requests (from omero-py)
02:00:14 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
02:00:14 Collecting portalocker (from omero-py)
02:00:14 Using cached portalocker-2.10.0-py3-none-any.whl.metadata (8.5 kB)
02:00:14 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
02:00:14 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
02:00:14 Collecting idna<4,>=2.5 (from requests->omero-py)
02:00:14 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
02:00:14 Collecting certifi>=2017.4.17 (from requests->omero-py)
02:00:14 Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB)
02:00:14 Using cached omero_py-5.19.3-py3-none-any.whl (2.8 MB)
02:00:15 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
02:00:15 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
02:00:15 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
02:00:15 Using cached portalocker-2.10.0-py3-none-any.whl (18 kB)
02:00:15 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
02:00:15 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
02:00:15 Using cached certifi-2024.6.2-py3-none-any.whl (164 kB)
02:00:15 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
02:00:15 Using cached idna-3.7-py3-none-any.whl (66 kB)
02:00:15 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
02:00:15 Attempting uninstall: numpy
02:00:15 Found existing installation: numpy 2.0.0
02:00:15 Uninstalling numpy-2.0.0:
02:00:15 Successfully uninstalled numpy-2.0.0
02:00:21 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.6.2 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.3 portalocker-2.10.0 requests-2.32.3 urllib3-1.26.19
02:00:21 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
02:00:22 Collecting omero-metadata
02:00:22 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-0at59qdw/omero-metadata_76c07cb0ed18474f872968d64f6d47f0
02:00:22 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-0at59qdw/omero-metadata_76c07cb0ed18474f872968d64f6d47f0
02:00:23 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 3589beee8b455734180aa03bf2b9223af1c2613a
02:00:23 Installing build dependencies: started
02:00:27 Installing build dependencies: finished with status 'done'
02:00:27 Getting requirements to build wheel: started
02:00:27 Getting requirements to build wheel: finished with status 'done'
02:00:27 Preparing metadata (pyproject.toml): started
02:00:28 Preparing metadata (pyproject.toml): finished with status 'done'
02:00:28 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.3)
02:00:28 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
02:00:28 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
02:00:28 Collecting pandas (from omero-metadata)
02:00:28 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
02:00:28 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19)
02:00:28 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
02:00:28 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
02:00:28 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
02:00:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0)
02:00:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
02:00:28 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
02:00:28 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.0)
02:00:28 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
02:00:28 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
02:00:28 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
02:00:29 Collecting pytz>=2020.1 (from pandas->omero-metadata)
02:00:29 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
02:00:29 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
02:00:29 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
02:00:29 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
02:00:29 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
02:00:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
02:00:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.6.2)
02:00:29 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
02:00:29 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
02:00:29 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
02:00:29 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
02:00:29 Building wheels for collected packages: omero-metadata
02:00:29 Building wheel for omero-metadata (pyproject.toml): started
02:00:30 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
02:00:30 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39112 sha256=83c39c66cb58946d084cf7621892cb13160a90b29de3af5bc72baada7739999b
02:00:30 Stored in directory: /tmp/pip-ephem-wheel-cache-7muyf8w3/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
02:00:30 Successfully built omero-metadata
02:00:30 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
02:00:38 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
02:00:38 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
02:00:38 Collecting omero-cli-render
02:00:38 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-67vmi1_r/omero-cli-render_45a3b20f0b3d4609bd8e8bdb4846c0e9
02:00:38 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-67vmi1_r/omero-cli-render_45a3b20f0b3d4609bd8e8bdb4846c0e9
02:00:40 Running command git checkout -b merge_ci --track origin/merge_ci
02:00:40 Switched to a new branch 'merge_ci'
02:00:40 branch 'merge_ci' set up to track 'origin/merge_ci'.
02:00:40 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 44cea6438eccd9916777350b3821940e72e5d9a0
02:00:40 Installing build dependencies: started
02:00:44 Installing build dependencies: finished with status 'done'
02:00:44 Getting requirements to build wheel: started
02:00:44 Getting requirements to build wheel: finished with status 'done'
02:00:44 Preparing metadata (pyproject.toml): started
02:00:45 Preparing metadata (pyproject.toml): finished with status 'done'
02:00:45 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
02:00:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.3)
02:00:45 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19)
02:00:45 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
02:00:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
02:00:45 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
02:00:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0)
02:00:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
02:00:45 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
02:00:45 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.0)
02:00:45 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
02:00:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
02:00:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.6.2)
02:00:45 Building wheels for collected packages: omero-cli-render
02:00:45 Building wheel for omero-cli-render (pyproject.toml): started
02:00:45 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
02:00:45 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18031 sha256=691ff8efebf54aee67a99c988ec08405770bbd3f35b7dff5e8a5ab11809c76ce
02:00:45 Stored in directory: /tmp/pip-ephem-wheel-cache-_rj8s_vx/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
02:00:45 Successfully built omero-cli-render
02:00:45 Installing collected packages: omero-cli-render
02:00:45 Successfully installed omero-cli-render-0.8.1.dev0
02:00:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
02:00:46 Collecting omero-cli-duplicate
02:00:46 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-tkiewg36/omero-cli-duplicate_aa55615a408949709ba48207af5c7aa3
02:00:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-tkiewg36/omero-cli-duplicate_aa55615a408949709ba48207af5c7aa3
02:00:48 Running command git checkout -b merge_ci --track origin/merge_ci
02:00:48 Switched to a new branch 'merge_ci'
02:00:48 branch 'merge_ci' set up to track 'origin/merge_ci'.
02:00:48 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 98c792bcd3f68dd87ab9e4b1efdd67373fd23db2
02:00:48 Installing build dependencies: started
02:00:51 Installing build dependencies: finished with status 'done'
02:00:51 Getting requirements to build wheel: started
02:00:51 Getting requirements to build wheel: finished with status 'done'
02:00:51 Preparing metadata (pyproject.toml): started
02:00:51 Preparing metadata (pyproject.toml): finished with status 'done'
02:00:51 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.3)
02:00:51 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19)
02:00:51 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
02:00:51 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
02:00:51 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
02:00:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0)
02:00:51 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
02:00:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
02:00:51 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
02:00:51 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.0)
02:00:51 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
02:00:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
02:00:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.6.2)
02:00:51 Building wheels for collected packages: omero-cli-duplicate
02:00:51 Building wheel for omero-cli-duplicate (pyproject.toml): started
02:00:52 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
02:00:52 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=fc2fe964737cdae214cb66d27cb520512cdc5de86f3d16db2f78b486b915d5ec
02:00:52 Stored in directory: /tmp/pip-ephem-wheel-cache-lwd_1mxm/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
02:00:52 Successfully built omero-cli-duplicate
02:00:52 Installing collected packages: omero-cli-duplicate
02:00:52 Successfully installed omero-cli-duplicate-0.4.1.dev0
02:00:52 + pip install omero-certificates
02:00:53 Collecting omero-certificates
02:00:53 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
02:00:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.3)
02:00:53 Collecting distro==1.8.0 (from omero-certificates)
02:00:53 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
02:00:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19)
02:00:53 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
02:00:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
02:00:53 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
02:00:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0)
02:00:53 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
02:00:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
02:00:53 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
02:00:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.0)
02:00:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
02:00:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
02:00:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.6.2)
02:00:53 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
02:00:53 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
02:00:53 Installing collected packages: distro, omero-certificates
02:00:53 Successfully installed distro-1.8.0 omero-certificates-0.3.2
02:00:53 + for x in *.tar.gz
02:00:53 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
02:00:54 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
02:00:54 Installing build dependencies: started
02:00:57 Installing build dependencies: finished with status 'done'
02:00:57 Getting requirements to build wheel: started
02:00:58 Getting requirements to build wheel: finished with status 'done'
02:00:58 Preparing metadata (pyproject.toml): started
02:00:58 Preparing metadata (pyproject.toml): finished with status 'done'
02:00:58 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.3)
02:00:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19)
02:00:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
02:00:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
02:00:58 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
02:00:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.3.0)
02:00:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1)
02:00:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
02:00:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
02:00:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.0)
02:00:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
02:00:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7)
02:00:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.6.2)
02:00:58 Building wheels for collected packages: omero-dropbox
02:00:58 Building wheel for omero-dropbox (pyproject.toml): started
02:00:59 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
02:00:59 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=3f9007c61833f39ef73366829049c92c2996ee9174492e20a453ab77600930ab
02:00:59 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
02:00:59 Successfully built omero-dropbox
02:00:59 Installing collected packages: omero-dropbox
02:00:59 Successfully installed omero-dropbox-5.7.1.dev0
02:00:59 + for x in *.tar.gz
02:00:59 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
02:01:00 Processing ./omero_marshal-0.9.1.dev0.tar.gz
02:01:00 Installing build dependencies: started
02:01:03 Installing build dependencies: finished with status 'done'
02:01:03 Getting requirements to build wheel: started
02:01:03 Getting requirements to build wheel: finished with status 'done'
02:01:03 Preparing metadata (pyproject.toml): started
02:01:04 Preparing metadata (pyproject.toml): finished with status 'done'
02:01:04 Building wheels for collected packages: omero_marshal
02:01:04 Building wheel for omero_marshal (pyproject.toml): started
02:01:04 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
02:01:04 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=e1781dac9602e04b3ff01895d21c3d79363405b4cb9fbae7cc6a0b5161bdafcb
02:01:04 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
02:01:04 Successfully built omero_marshal
02:01:05 Installing collected packages: omero_marshal
02:01:05 Successfully installed omero_marshal-0.9.1.dev0
02:01:05 + for x in *.tar.gz
02:01:05 + pip install -U omero_py-5.19.4.dev0.tar.gz
02:01:06 Processing ./omero_py-5.19.4.dev0.tar.gz
02:01:06 Installing build dependencies: started
02:01:09 Installing build dependencies: finished with status 'done'
02:01:09 Getting requirements to build wheel: started
02:01:09 Getting requirements to build wheel: finished with status 'done'
02:01:09 Preparing metadata (pyproject.toml): started
02:01:10 Preparing metadata (pyproject.toml): finished with status 'done'
02:01:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.19)
02:01:10 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.4.4)
02:01:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.0.0)
02:01:10 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.4)
02:01:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (10.3.0)
02:01:10 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (6.0.1)
02:01:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (3.6.5)
02:01:10 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.32.3)
02:01:10 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.10.0)
02:01:10 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.3.2)
02:01:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.7)
02:01:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (2024.6.2)
02:01:10 Building wheels for collected packages: omero-py
02:01:10 Building wheel for omero-py (pyproject.toml): started
02:01:11 Building wheel for omero-py (pyproject.toml): finished with status 'done'
02:01:11 Created wheel for omero-py: filename=omero_py-5.19.4.dev0-py3-none-any.whl size=2782848 sha256=9b39f01ae86739ae5d426d8ea3a6ac22852d0505d4dd3f7387c72a1b30b3f199
02:01:11 Stored in directory: /home/omero/.cache/pip/wheels/f4/9e/a5/caf57b3ab5be95b791b32331e833a135756ff787a5d5189ab9
02:01:11 Successfully built omero-py
02:01:11 Installing collected packages: omero-py
02:01:11 Attempting uninstall: omero-py
02:01:11 Found existing installation: omero-py 5.19.3
02:01:12 Uninstalling omero-py-5.19.3:
02:01:12 Successfully uninstalled omero-py-5.19.3
02:01:16 Successfully installed omero-py-5.19.4.dev0
02:01:16 + for x in *.tar.gz
02:01:16 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
02:01:17 Processing ./omero_scripts-5.8.3.dev0.tar.gz
02:01:17 Installing build dependencies: started
02:01:20 Installing build dependencies: finished with status 'done'
02:01:20 Getting requirements to build wheel: started
02:01:20 Getting requirements to build wheel: finished with status 'done'
02:01:20 Preparing metadata (pyproject.toml): started
02:01:20 Preparing metadata (pyproject.toml): finished with status 'done'
02:01:20 Building wheels for collected packages: omero-scripts
02:01:20 Building wheel for omero-scripts (pyproject.toml): started
02:01:21 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
02:01:21 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116556 sha256=8741b7165dd851a6b55349cc2095b0140748b01328e96adec196c510a71a2d38
02:01:21 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
02:01:21 Successfully built omero-scripts
02:01:21 Installing collected packages: omero-scripts
02:01:21 Successfully installed omero-scripts-5.8.3.dev0
02:01:21 + for x in *.tar.gz
02:01:21 + pip install -U omero_web-5.26.1.dev0.tar.gz
02:01:22 Processing ./omero_web-5.26.1.dev0.tar.gz
02:01:23 Installing build dependencies: started
02:01:25 Installing build dependencies: finished with status 'done'
02:01:25 Getting requirements to build wheel: started
02:01:26 Getting requirements to build wheel: finished with status 'done'
02:01:26 Preparing metadata (pyproject.toml): started
02:01:26 Preparing metadata (pyproject.toml): finished with status 'done'
02:01:26 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.4.dev0)
02:01:26 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0)
02:01:26 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
02:01:27 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0)
02:01:27 Using cached Django-4.2.13-py3-none-any.whl.metadata (4.1 kB)
02:01:27 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0)
02:01:27 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
02:01:27 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0)
02:01:27 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
02:01:27 Collecting django-csp (from omero-web==5.26.1.dev0)
02:01:27 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
02:01:27 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0)
02:01:27 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
02:01:27 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0)
02:01:28 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
02:01:28 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0)
02:01:28 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.3.0)
02:01:28 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1)
02:01:28 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.0)
02:01:28 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1)
02:01:28 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
02:01:28 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
02:01:28 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
02:01:28 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
02:01:28 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19)
02:01:28 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4)
02:01:28 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0)
02:01:28 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4)
02:01:28 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1)
02:01:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5)
02:01:28 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3)
02:01:28 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
02:01:28 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
02:01:28 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2)
02:01:28 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7)
02:01:28 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.6.2)
02:01:28 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
02:01:28 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
02:01:28 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
02:01:29 Using cached Django-4.2.13-py3-none-any.whl (8.0 MB)
02:01:29 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
02:01:29 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
02:01:29 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
02:01:29 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
02:01:29 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
02:01:29 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
02:01:29 Building wheels for collected packages: omero-web
02:01:29 Building wheel for omero-web (pyproject.toml): started
02:01:31 Building wheel for omero-web (pyproject.toml): finished with status 'done'
02:01:31 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2764663 sha256=9f7c661fc90df213cdd1fa77032578576eb42bd50b1fa6632a78473d0bab64c8
02:01:31 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453
02:01:31 Successfully built omero-web
02:01:31 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
02:01:35 Successfully installed Django-4.2.13 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.0 typing-extensions-4.12.2 whitenoise-6.7.0
02:01:35 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
02:01:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
02:01:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
02:01:36 --2024-07-01 02:01:36-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
02:01:36 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ...
02:01:36 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
02:01:36 HTTP request sent, awaiting response... 200 OK
02:01:36 Length: 94763 (93K) [text/plain]
02:01:36 Saving to: ‘Figure_To_Pdf.py’
02:01:36
02:01:36 0K .......... .......... .......... .......... .......... 54% 2.36M 0s
02:01:36 50K .......... .......... .......... .......... .. 100% 15.8M=0.02s
02:01:36
02:01:36 2024-07-01 02:01:36 (3.88 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763]
02:01:36
02:01:36 + chmod 755 Figure_To_Pdf.py
02:01:36 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
02:01:36 + omero config set omero.db.name OMERO-server
02:01:40 + omero config set omero.db.host pg
02:01:43 + omero config set omero.db.user postgres
02:01:45 + omero config set omero.data.dir /home/omero/omero-server-data
02:01:48 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
02:01:50 + omero config set omero.db.poolsize 25
02:01:53 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
02:01:56 + omero config set omero.security.trustStorePassword changeit
02:01:59 + omero config set omero.mail.config true
02:02:02 + omero config set omero.mail.from qa@openmicroscopy.org.uk
02:02:04 + omero config set omero.mail.host smtp.dundee.ac.uk
02:02:06 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
02:02:08 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
02:02:10 + omero certificates
02:02:13 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
02:02:13 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
02:02:13 + '[' false = true ']'
02:02:13 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
02:02:13 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
02:02:13 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
02:02:14 2024-07-01 02:02:14,421 [ omego.db] DEBUG dbcommand => upgrade
02:02:14 2024-07-01 02:02:14,421 [ omego.db] DEBUG dbhost => localhost
02:02:14 2024-07-01 02:02:14,421 [ omego.db] DEBUG dbname => OMERO-server
02:02:14 2024-07-01 02:02:14,421 [ omego.db] DEBUG dbpass => omero
02:02:14 2024-07-01 02:02:14,422 [ omego.db] DEBUG dbuser => omero
02:02:14 2024-07-01 02:02:14,422 [ omego.db] DEBUG rootpass => omero
02:02:14 2024-07-01 02:02:14,422 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
02:02:14 2024-07-01 02:02:14,422 [omego.extern] INFO Executing : omero version
02:02:17 OMERO.py version:
02:02:17 OMERO.server version:
02:02:17 5.6.3-475-99dd296a2f-ice36
02:02:17 5.19.4.dev0
02:02:18 2024-07-01 02:02:18,231 [omego.extern] INFO Completed [3.809 s]
02:02:18 2024-07-01 02:02:18,232 [omego.extern] DEBUG Using omero CLI from omero
02:02:18 2024-07-01 02:02:18,232 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
02:02:18 2024-07-01 02:02:18,232 [omego.extern] INFO Running [current environment]: omero config get --show-password
02:02:18 2024-07-01 02:02:18,232 [omego.extern] INFO Executing : omero config get --show-password
02:02:20 2024-07-01 02:02:20,730 [omego.extern] INFO Completed [2.498 s]
02:02:20 2024-07-01 02:02:20,731 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
02:02:20 2024-07-01 02:02:20,731 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
02:02:21 2024-07-01 02:02:21,050 [omego.extern] INFO Completed [0.318 s]
02:02:21 2024-07-01 02:02:21,050 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
02:02:21 2024-07-01 02:02:21,050 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
02:02:21
02:02:21 2024-07-01 02:02:21,050 [omego.extern] INFO Running [current environment]: omero config get --show-password
02:02:21 2024-07-01 02:02:21,050 [omego.extern] INFO Executing : omero config get --show-password
02:02:24 2024-07-01 02:02:24,691 [omego.extern] INFO Completed [3.641 s]
02:02:24 2024-07-01 02:02:24,691 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
02:02:24 2024-07-01 02:02:24,692 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
02:02:24 2024-07-01 02:02:24,808 [omego.extern] INFO Completed [0.116 s]
02:02:24 2024-07-01 02:02:24,809 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.7") at port "5432".\n'
02:02:24 2024-07-01 02:02:24,809 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
02:02:24 2024-07-01 02:02:24,809 [omego.extern] INFO Running [current environment]: omero config get --show-password
02:02:24 2024-07-01 02:02:24,809 [omego.extern] INFO Executing : omero config get --show-password
02:02:27 2024-07-01 02:02:27,145 [omego.extern] INFO Completed [2.336 s]
02:02:27 2024-07-01 02:02:27,145 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
02:02:27 2024-07-01 02:02:27,146 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
02:02:27 2024-07-01 02:02:27,243 [omego.extern] INFO Completed [0.097 s]
02:02:27 2024-07-01 02:02:27,243 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
02:02:27 2024-07-01 02:02:27,243 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
02:02:27 2024-07-01 02:02:27,245 [ omego.db] INFO Database is already at OMERO5.4__0
02:02:27 + export LANG=en_US.UTF-8
02:02:27 + LANG=en_US.UTF-8
02:02:27 + export LANGUAGE=en_US:en
02:02:27 + LANGUAGE=en_US:en
02:02:27 + export LC_ALL=en_US.UTF-8
02:02:27 + LC_ALL=en_US.UTF-8
02:02:27 + BUILD_ID=DONT_KILL_ME
02:02:27 + omero admin start
02:02:50 No descriptor given. Using etc/grid/default.xml
02:03:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
02:03:17 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
02:03:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
02:03:17 Waiting on startup. Use CTRL-C to exit
02:03:18 + omero admin waitup
02:03:19 Waiting on startup. Use CTRL-C to exit
02:03:20 + omero admin diagnostics
02:03:22
02:03:22 ================================================================================
02:03:22 OMERO Diagnostics (admin)
02:03:22 ================================================================================
02:03:22
02:03:22 Commands: java -version 17.0.11 (/usr/bin/java)
02:03:22 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
02:03:22 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
02:03:22 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
02:03:22 Commands: psql --version 16.2 (/usr/bin/psql)
02:03:22 Commands: openssl version 3.0.71 (/usr/bin/openssl)
02:03:22
02:03:22 Component: OMERO.py 5.19.4.dev0
02:03:22 Component: OMERO.server 5.6.3-475-99dd296a2f-ice36
02:03:22
02:03:22 Server: icegridnode running
02:03:22 Server: Blitz-0 active (pid = 45831, enabled)
02:03:22 Server: Indexer-0 active (pid = 45860, enabled)
02:03:22 Server: OMERO.Glacier2 active (pid = 45852, enabled)
02:03:22 Server: OMERO.IceStorm active (pid = 45888, enabled)
02:03:22 Server: Processor-0 activating (enabled)
02:03:22 Server: Tables-0 activating (enabled)
02:03:22
02:03:22 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
02:03:22 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
02:03:22 Log files: DropBox.log n/a
02:03:22 Log files: FileServer.log n/a
02:03:22 Log files: Indexer-0.log 2.6 KB
02:03:22 Log files: MonitorServer.log n/a
02:03:22 Log files: Processor-0.log 592 B
02:03:22 Log files: Tables-0.log 841 B
02:03:22 Log files: TestDropBox.log n/a
02:03:22 Log files: master.err empty
02:03:22 Log files: master.out 30.1 KB
02:03:22 Log files: Total size 0.06 MB
02:03:22
02:03:22
02:03:22 Environment:OMERO_HOME=(unset)
02:03:22 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
02:03:22 Environment:OMERO_NODE=(unset)
02:03:22 Environment:OMERO_MASTER=(unset)
02:03:22 Environment:OMERO_USERDIR=(unset)
02:03:22 Environment:OMERO_TMPDIR=(unset)
02:03:22 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:03:22 Environment:PYTHONPATH=(unset)
02:03:22 Environment:ICE_HOME=/opt/ice-3.6.5
02:03:22 Environment:LD_LIBRARY_PATH=(unset)
02:03:22 Environment:DYLD_LIBRARY_PATH=(unset)
02:03:22
02:03:22 OMERO SSL port:4064
02:03:22 OMERO TCP port:4063
02:03:22 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
02:03:22 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
02:03:22
02:03:22 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
02:03:22 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
02:03:22 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
02:03:22 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
02:03:22
02:03:22 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 1 July 2024 f26ca0d04d77dbe3ad9bd0a23a1e72727cc4b980
02:03:22 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 1 July 2024 f26ca0d04d77dbe3ad9bd0a23a1e72727cc4b980
02:03:22 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 1 July 2024 f26ca0d04d77dbe3ad9bd0a23a1e72727cc4b980
02:03:22 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 1 July 2024 821ba555e907f9aa785bca91af720eec798455ec
02:03:22 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 1 July 2024 821ba555e907f9aa785bca91af720eec798455ec
02:03:22 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 1 July 2024 821ba555e907f9aa785bca91af720eec798455ec
02:03:22 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 1 July 2024 821ba555e907f9aa785bca91af720eec798455ec
02:03:22 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 1 July 2024 821ba555e907f9aa785bca91af720eec798455ec
02:03:22 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 1 July 2024 821ba555e907f9aa785bca91af720eec798455ec
02:03:22 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT
02:03:22 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT
02:03:22 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT
02:03:22 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT
02:03:22 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT
02:03:22 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT
02:03:22 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT
02:03:22 + deactivate
02:03:22 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
02:03:22 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:03:22 + export PATH
02:03:22 + unset _OLD_VIRTUAL_PATH
02:03:22 + '[' -n '' ']'
02:03:22 + '[' -n /bin/bash -o -n '' ']'
02:03:22 + hash -r
02:03:22 + '[' -n '' ']'
02:03:22 + unset VIRTUAL_ENV
02:03:22 + '[' '!' '' = nondestructive ']'
02:03:22 + unset -f deactivate
02:03:22 Finished: SUCCESS
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