11:38:01 Started by upstream project "Trigger" build number 122
11:38:01 originally caused by:
11:38:01 Started by user devspace
11:38:01 Running as SYSTEM
11:38:01 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
11:38:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1916695266615393237.sh
11:38:01 + source /home/settings.env
11:38:01 ++ OMERO_DB_HOST=pg
11:38:01 ++ OMERO_DB_USER=postgres
11:38:01 ++ OMERO_DB_PASS=
11:38:01 ++ OMERO_ROOT_PASS=omero
11:38:01 ++ OMERO_DATA_DIR=/OMERO
11:38:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:38:01 + OMERO_DB_NAME=OMERO-server
11:38:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
11:38:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:38:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:38:01 + OMERO_DATA_DIR=/home/omero/omero-server-data
11:38:01 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
11:38:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
11:38:01 ++ deactivate nondestructive
11:38:01 ++ '[' -n '' ']'
11:38:01 ++ '[' -n '' ']'
11:38:01 ++ '[' -n /bin/bash -o -n '' ']'
11:38:01 ++ hash -r
11:38:01 ++ '[' -n '' ']'
11:38:01 ++ unset VIRTUAL_ENV
11:38:01 ++ '[' '!' nondestructive = nondestructive ']'
11:38:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
11:38:01 ++ export VIRTUAL_ENV
11:38:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:38:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:38:01 ++ export PATH
11:38:01 ++ '[' -n '' ']'
11:38:01 ++ '[' -z '' ']'
11:38:01 ++ _OLD_VIRTUAL_PS1=
11:38:01 ++ PS1='(.venv3) '
11:38:01 ++ export PS1
11:38:01 ++ '[' -n /bin/bash -o -n '' ']'
11:38:01 ++ hash -r
11:38:01 + omero admin stop
11:38:21 Server not running
11:38:21 + echo not running
11:38:21 not running
11:38:21 + sleep 5
11:38:26 + deactivate
11:38:26 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:38:26 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:38:26 + export PATH
11:38:26 + unset _OLD_VIRTUAL_PATH
11:38:26 + '[' -n '' ']'
11:38:26 + '[' -n /bin/bash -o -n '' ']'
11:38:26 + hash -r
11:38:26 + '[' -n '' ']'
11:38:26 + unset VIRTUAL_ENV
11:38:26 + '[' '!' '' = nondestructive ']'
11:38:26 + unset -f deactivate
11:38:26 + rm -rf /home/omero/workspace/OMERO-server/.venv3
11:38:27 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
11:38:32 + '[' false = true ']'
11:38:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
11:38:32 Skipping PURGE_DATA:CleanDbAndRepo
11:38:32 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.4.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.26.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
11:38:36 Copied 1 artifact from "OMERO-build" build number 108
11:38:36 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 107
11:38:36 Copied 2 artifacts from "OMERO-build-build" build number 108
11:38:36 [OMERO-server] $ /bin/bash -xe /tmp/jenkins5288113670281607948.sh
11:38:36 + source /home/settings.env
11:38:36 ++ OMERO_DB_HOST=pg
11:38:36 ++ OMERO_DB_USER=postgres
11:38:36 ++ OMERO_DB_PASS=
11:38:36 ++ OMERO_ROOT_PASS=omero
11:38:36 ++ OMERO_DATA_DIR=/OMERO
11:38:36 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:38:36 + OMERO_DB_NAME=OMERO-server
11:38:36 + OMERO_DATA_DIR=/home/omero/omero-server-data
11:38:36 + mkdir -p /home/omero/omero-server-data
11:38:36 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
11:38:36 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:38:36 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:38:36 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
11:38:36 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
11:38:36 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
11:38:36 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
11:38:36 ++ ls OMERO.server-5.6.3-475-e41a3b9be5-ice36.zip
11:38:36 + ZIP=OMERO.server-5.6.3-475-e41a3b9be5-ice36.zip
11:38:36 + '[' '!' -z '' ']'
11:38:36 + DIST=OMERO.server-5.6.3-475-e41a3b9be5-ice36
11:38:36 + unzip OMERO.server-5.6.3-475-e41a3b9be5-ice36.zip
11:38:37 Archive: OMERO.server-5.6.3-475-e41a3b9be5-ice36.zip
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/blitz/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/grid/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/profiles/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/error/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/grid/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/luts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/luts/janelia/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/luts/ncsa_paledit/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/luts/wcif/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/omero/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/omero/analysis_scripts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/omero/annotation_scripts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/omero/export_scripts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/omero/figure_scripts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/omero/import_scripts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/scripts/omero/util_scripts/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/server/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/share/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/share/licenses/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/misc/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__1/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__10/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__11/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__2/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__3/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__4/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__5/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__6/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__7/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__8/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3A__9/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3__4/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3__5/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3__6/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO3__7/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO4.1__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO4.2__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO4.2__0/t/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO4.3__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO4.4__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO4__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.0__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.1__1/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.2__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.3__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4DEV__1/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4DEV__2/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4DEV__3/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/
11:38:37 creating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/var/
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/LICENSE.txt
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/backup.cfg
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/blitz/mail-senders.example
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/blitz/mail-server.example
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/build.properties
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/env.bat
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/env.sh
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/hibernate.properties
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/ice.config
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/logback-cli.xml
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/logback-indexing-cli.xml
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/logback-indexing.xml
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/logback.xml
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/mime.types
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/node1.cfg
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/node2.cfg
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/omero.properties
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/profiles/psql
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/rollover.cfg
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/Windows.cfg
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/error/maintainance.html
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/grid/README
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/grid/default.xml
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/grid/templates.xml
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/grid/windefault.xml
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/ice.config
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/internal.cfg
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/master.cfg
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/templates/robot.template
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/etc/testdropbox.config
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/history.rst
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/OMEZarrReader.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/activation.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/aggdesigner-algorithm.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/aircompressor.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/annotations.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/antlr.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/aopalliance.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/avatica-core.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/avatica-metrics.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/aws-java-sdk-core.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/aws-java-sdk-kms.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/aws-java-sdk-s3.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/base.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-all.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-anim.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-awt-util.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-bridge.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-codec.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-constants.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-css.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-dom.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-ext.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-extension.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-gui-util.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-gvt.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-i18n.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-parser.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-rasterizer-ext.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-rasterizer.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-script.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-slideshow.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-squiggle-ext.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-squiggle.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-svg-dom.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-svgbrowser.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-svggen.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-svgpp.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-svgrasterizer.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-swing.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-transcoder.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-ttf2svg.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-util.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/batik-xml.jar
11:38:37 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/lib/client/btm.jar
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11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/psql-header.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/schema.sql
11:38:39 inflating: OMERO.server-5.6.3-475-e41a3b9be5-ice36/sql/psql/OMERO5.4__0/views.sql
11:38:39 + rm -f OMERO.server-5.6.3-475-e41a3b9be5-ice36.zip
11:38:39 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-475-e41a3b9be5-ice36 /home/omero/workspace/OMERO-server/OMERO.server
11:38:39 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
11:38:39 ++ deactivate nondestructive
11:38:39 ++ '[' -n '' ']'
11:38:39 ++ '[' -n '' ']'
11:38:39 ++ '[' -n /bin/bash -o -n '' ']'
11:38:39 ++ hash -r
11:38:39 ++ '[' -n '' ']'
11:38:39 ++ unset VIRTUAL_ENV
11:38:39 ++ '[' '!' nondestructive = nondestructive ']'
11:38:39 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
11:38:39 ++ export VIRTUAL_ENV
11:38:39 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:38:39 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:38:39 ++ export PATH
11:38:39 ++ '[' -n '' ']'
11:38:39 ++ '[' -z '' ']'
11:38:39 ++ _OLD_VIRTUAL_PS1=
11:38:39 ++ PS1='(.venv3) '
11:38:39 ++ export PS1
11:38:39 ++ '[' -n /bin/bash -o -n '' ']'
11:38:39 ++ hash -r
11:38:39 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
11:38:40 Collecting zeroc-ice==3.6.5
11:38:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
11:38:42 Installing collected packages: zeroc-ice
11:38:43 Successfully installed zeroc-ice-3.6.5
11:38:43 + pip install -U pip future
11:38:44 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
11:38:44 Collecting pip
11:38:44 Using cached pip-24.1.1-py3-none-any.whl (1.8 MB)
11:38:44 Collecting future
11:38:44 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:38:44 Installing collected packages: pip, future
11:38:44 Attempting uninstall: pip
11:38:44 Found existing installation: pip 21.2.3
11:38:45 Uninstalling pip-21.2.3:
11:38:45 Successfully uninstalled pip-21.2.3
11:38:46 Successfully installed future-1.0.0 pip-24.1.1
11:38:46 + pip install markdown
11:38:47 Collecting markdown
11:38:47 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
11:38:47 Collecting importlib-metadata>=4.4 (from markdown)
11:38:47 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB)
11:38:47 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
11:38:47 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
11:38:47 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
11:38:47 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB)
11:38:47 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB)
11:38:47 Installing collected packages: zipp, importlib-metadata, markdown
11:38:47 Successfully installed importlib-metadata-8.0.0 markdown-3.6 zipp-3.19.2
11:38:48 + pip install reportlab
11:38:49 Collecting reportlab
11:38:49 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
11:38:49 Collecting pillow>=9.0.0 (from reportlab)
11:38:49 Downloading pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
11:38:49 Collecting chardet (from reportlab)
11:38:49 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
11:38:49 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
11:38:50 Downloading pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
11:38:50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 11.9 MB/s eta 0:00:00
11:38:50 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
11:38:50 Installing collected packages: pillow, chardet, reportlab
11:38:51 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
11:38:52 + pip install omego
11:38:52 Collecting omego
11:38:52 Using cached omego-0.7.0-py3-none-any.whl
11:38:52 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
11:38:52 Collecting yaclifw>=0.1.1 (from omego)
11:38:52 Using cached yaclifw-0.2.0-py3-none-any.whl
11:38:52 Collecting six (from yaclifw>=0.1.1->omego)
11:38:52 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
11:38:52 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
11:38:52 Installing collected packages: six, yaclifw, omego
11:38:53 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
11:38:53 + pip install tables
11:38:53 Collecting tables
11:38:53 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
11:38:53 Collecting numpy>=1.19.0 (from tables)
11:38:54 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
11:38:54 Collecting numexpr>=2.6.2 (from tables)
11:38:54 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
11:38:54 Collecting packaging (from tables)
11:38:54 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
11:38:54 Collecting py-cpuinfo (from tables)
11:38:54 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
11:38:54 Collecting blosc2>=2.3.0 (from tables)
11:38:54 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
11:38:54 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
11:38:54 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
11:38:54 Collecting msgpack (from blosc2>=2.3.0->tables)
11:38:54 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
11:38:54 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
11:38:54 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
11:38:54 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
11:38:54 Using cached numpy-2.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.3 MB)
11:38:55 Using cached packaging-24.1-py3-none-any.whl (53 kB)
11:38:55 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
11:38:55 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
11:38:55 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
11:38:55 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
11:38:59 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.1 numpy-2.0.0 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
11:38:59 + pip install jinja2
11:38:59 Collecting jinja2
11:38:59 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
11:38:59 Collecting MarkupSafe>=2.0 (from jinja2)
11:38:59 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
11:38:59 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
11:38:59 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
11:38:59 Installing collected packages: MarkupSafe, jinja2
11:39:00 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
11:39:00 + pip install omero-py
11:39:00 Collecting omero-py
11:39:00 Using cached omero_py-5.19.3-py3-none-any.whl.metadata (6.3 kB)
11:39:00 Collecting urllib3<2 (from omero-py)
11:39:00 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
11:39:00 Collecting appdirs (from omero-py)
11:39:00 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
11:39:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
11:39:01 Collecting numpy<2 (from omero-py)
11:39:01 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
11:39:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
11:39:01 Collecting PyYAML (from omero-py)
11:39:01 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
11:39:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
11:39:01 Collecting requests (from omero-py)
11:39:01 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
11:39:01 Collecting portalocker (from omero-py)
11:39:01 Using cached portalocker-2.10.0-py3-none-any.whl.metadata (8.5 kB)
11:39:01 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
11:39:01 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
11:39:01 Collecting idna<4,>=2.5 (from requests->omero-py)
11:39:01 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
11:39:01 Collecting certifi>=2017.4.17 (from requests->omero-py)
11:39:01 Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB)
11:39:01 Using cached omero_py-5.19.3-py3-none-any.whl (2.8 MB)
11:39:01 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
11:39:01 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
11:39:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:39:02 Using cached portalocker-2.10.0-py3-none-any.whl (18 kB)
11:39:02 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
11:39:02 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
11:39:02 Using cached certifi-2024.6.2-py3-none-any.whl (164 kB)
11:39:02 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
11:39:02 Using cached idna-3.7-py3-none-any.whl (66 kB)
11:39:02 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
11:39:02 Attempting uninstall: numpy
11:39:02 Found existing installation: numpy 2.0.0
11:39:02 Uninstalling numpy-2.0.0:
11:39:02 Successfully uninstalled numpy-2.0.0
11:39:07 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.6.2 charset-normalizer-3.3.2 idna-3.7 numpy-1.26.4 omero-py-5.19.3 portalocker-2.10.0 requests-2.32.3 urllib3-1.26.19
11:39:07 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
11:39:07 Collecting omero-metadata
11:39:07 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-_k1495ko/omero-metadata_c4cd4f3d31ab452190a51e0c21f4d288
11:39:07 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-_k1495ko/omero-metadata_c4cd4f3d31ab452190a51e0c21f4d288
11:39:08 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 5301409fdb677d08aeeed0df1a405fa2c6adecf7
11:39:08 Installing build dependencies: started
11:39:11 Installing build dependencies: finished with status 'done'
11:39:11 Getting requirements to build wheel: started
11:39:11 Getting requirements to build wheel: finished with status 'done'
11:39:11 Preparing metadata (pyproject.toml): started
11:39:12 Preparing metadata (pyproject.toml): finished with status 'done'
11:39:12 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.3)
11:39:12 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
11:39:12 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
11:39:12 Collecting pandas (from omero-metadata)
11:39:12 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
11:39:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.19)
11:39:12 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
11:39:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
11:39:12 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
11:39:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
11:39:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
11:39:12 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
11:39:12 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.0)
11:39:12 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
11:39:12 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
11:39:12 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
11:39:12 Collecting pytz>=2020.1 (from pandas->omero-metadata)
11:39:12 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
11:39:12 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
11:39:12 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
11:39:12 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
11:39:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
11:39:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
11:39:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.6.2)
11:39:12 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
11:39:13 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
11:39:13 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
11:39:13 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
11:39:13 Building wheels for collected packages: omero-metadata
11:39:13 Building wheel for omero-metadata (pyproject.toml): started
11:39:14 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
11:39:14 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=070c307201cdbabbb586119a2553ce8d06fcb1041c5bfa825ae69c4bed76b419
11:39:14 Stored in directory: /tmp/pip-ephem-wheel-cache-zu90j86v/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
11:39:14 Successfully built omero-metadata
11:39:14 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
11:39:22 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
11:39:22 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
11:39:23 Collecting omero-cli-render
11:39:23 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-9dvqs76k/omero-cli-render_3dbf6547f7c24544a5a7d7a592984c7b
11:39:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-9dvqs76k/omero-cli-render_3dbf6547f7c24544a5a7d7a592984c7b
11:39:24 Running command git checkout -b merge_ci --track origin/merge_ci
11:39:24 Switched to a new branch 'merge_ci'
11:39:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:39:24 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c94cefa84a5760898edc409aa768501340eefa74
11:39:24 Installing build dependencies: started
11:39:26 Installing build dependencies: finished with status 'done'
11:39:26 Getting requirements to build wheel: started
11:39:26 Getting requirements to build wheel: finished with status 'done'
11:39:26 Preparing metadata (pyproject.toml): started
11:39:27 Preparing metadata (pyproject.toml): finished with status 'done'
11:39:27 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
11:39:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.3)
11:39:27 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.19)
11:39:27 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
11:39:27 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
11:39:27 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
11:39:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
11:39:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
11:39:27 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
11:39:27 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.0)
11:39:27 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
11:39:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
11:39:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.6.2)
11:39:27 Building wheels for collected packages: omero-cli-render
11:39:27 Building wheel for omero-cli-render (pyproject.toml): started
11:39:27 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
11:39:27 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18030 sha256=c097c2db7059cf9ee4d660c86a2b1d12707ae979a660c7e96a5a73407c1cf37c
11:39:27 Stored in directory: /tmp/pip-ephem-wheel-cache-fvjak_sq/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
11:39:27 Successfully built omero-cli-render
11:39:27 Installing collected packages: omero-cli-render
11:39:27 Successfully installed omero-cli-render-0.8.1.dev0
11:39:27 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
11:39:28 Collecting omero-cli-duplicate
11:39:28 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-fp5rcwrs/omero-cli-duplicate_d0710cad6bf844bca9a8bde9aefa3bf6
11:39:28 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-fp5rcwrs/omero-cli-duplicate_d0710cad6bf844bca9a8bde9aefa3bf6
11:39:29 Running command git checkout -b merge_ci --track origin/merge_ci
11:39:29 Switched to a new branch 'merge_ci'
11:39:29 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:39:29 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 41ae61a70143d5b4783b01673645bee03cac70cb
11:39:29 Installing build dependencies: started
11:39:32 Installing build dependencies: finished with status 'done'
11:39:32 Getting requirements to build wheel: started
11:39:32 Getting requirements to build wheel: finished with status 'done'
11:39:32 Preparing metadata (pyproject.toml): started
11:39:32 Preparing metadata (pyproject.toml): finished with status 'done'
11:39:32 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.3)
11:39:32 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.19)
11:39:32 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
11:39:32 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
11:39:32 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
11:39:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
11:39:32 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
11:39:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
11:39:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
11:39:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.0)
11:39:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
11:39:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
11:39:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.6.2)
11:39:32 Building wheels for collected packages: omero-cli-duplicate
11:39:32 Building wheel for omero-cli-duplicate (pyproject.toml): started
11:39:33 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
11:39:33 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=0b18ebe2d48ccbcab3bd1be1ef6ed410f3ce79c429e1e7ea548e25a759851d84
11:39:33 Stored in directory: /tmp/pip-ephem-wheel-cache-ywsim0y8/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
11:39:33 Successfully built omero-cli-duplicate
11:39:33 Installing collected packages: omero-cli-duplicate
11:39:33 Successfully installed omero-cli-duplicate-0.4.1.dev0
11:39:33 + pip install omero-certificates
11:39:34 Collecting omero-certificates
11:39:34 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
11:39:34 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.3)
11:39:34 Collecting distro==1.8.0 (from omero-certificates)
11:39:34 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
11:39:34 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.19)
11:39:34 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
11:39:34 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
11:39:34 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
11:39:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
11:39:34 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
11:39:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
11:39:34 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
11:39:34 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.0)
11:39:34 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
11:39:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
11:39:34 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.6.2)
11:39:34 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
11:39:34 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
11:39:34 Installing collected packages: distro, omero-certificates
11:39:34 Successfully installed distro-1.8.0 omero-certificates-0.3.2
11:39:34 + for x in *.tar.gz
11:39:34 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
11:39:35 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
11:39:35 Installing build dependencies: started
11:39:37 Installing build dependencies: finished with status 'done'
11:39:37 Getting requirements to build wheel: started
11:39:38 Getting requirements to build wheel: finished with status 'done'
11:39:38 Preparing metadata (pyproject.toml): started
11:39:38 Preparing metadata (pyproject.toml): finished with status 'done'
11:39:38 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.3)
11:39:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.19)
11:39:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
11:39:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
11:39:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
11:39:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
11:39:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.1)
11:39:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
11:39:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
11:39:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.0)
11:39:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
11:39:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.7)
11:39:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.6.2)
11:39:38 Building wheels for collected packages: omero-dropbox
11:39:38 Building wheel for omero-dropbox (pyproject.toml): started
11:39:38 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
11:39:38 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=45176b333017fcc00dd1a500baf1a8166bf1a0d53f64e07ff5f8bffad581ebf8
11:39:38 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
11:39:38 Successfully built omero-dropbox
11:39:38 Installing collected packages: omero-dropbox
11:39:39 Successfully installed omero-dropbox-5.7.1.dev0
11:39:39 + for x in *.tar.gz
11:39:39 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
11:39:39 Processing ./omero_marshal-0.9.1.dev0.tar.gz
11:39:39 Installing build dependencies: started
11:39:42 Installing build dependencies: finished with status 'done'
11:39:42 Getting requirements to build wheel: started
11:39:42 Getting requirements to build wheel: finished with status 'done'
11:39:42 Preparing metadata (pyproject.toml): started
11:39:43 Preparing metadata (pyproject.toml): finished with status 'done'
11:39:43 Building wheels for collected packages: omero_marshal
11:39:43 Building wheel for omero_marshal (pyproject.toml): started
11:39:43 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
11:39:43 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=3d037e05deaa7c0c894b8ea66718d4af3b5a1091c3d7207e8e86f89346e290d0
11:39:43 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
11:39:43 Successfully built omero_marshal
11:39:43 Installing collected packages: omero_marshal
11:39:43 Successfully installed omero_marshal-0.9.1.dev0
11:39:44 + for x in *.tar.gz
11:39:44 + pip install -U omero_py-5.19.4.dev0.tar.gz
11:39:44 Processing ./omero_py-5.19.4.dev0.tar.gz
11:39:45 Installing build dependencies: started
11:39:47 Installing build dependencies: finished with status 'done'
11:39:47 Getting requirements to build wheel: started
11:39:48 Getting requirements to build wheel: finished with status 'done'
11:39:48 Preparing metadata (pyproject.toml): started
11:39:48 Preparing metadata (pyproject.toml): finished with status 'done'
11:39:48 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.19)
11:39:48 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.4.4)
11:39:48 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.0.0)
11:39:48 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (1.26.4)
11:39:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (10.4.0)
11:39:48 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (6.0.1)
11:39:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (3.6.5)
11:39:48 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.32.3)
11:39:48 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.4.dev0) (2.10.0)
11:39:48 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.3.2)
11:39:48 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (3.7)
11:39:48 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.4.dev0) (2024.6.2)
11:39:48 Building wheels for collected packages: omero-py
11:39:48 Building wheel for omero-py (pyproject.toml): started
11:39:50 Building wheel for omero-py (pyproject.toml): finished with status 'done'
11:39:50 Created wheel for omero-py: filename=omero_py-5.19.4.dev0-py3-none-any.whl size=2782850 sha256=6278dbb79e12255b405bf9ee26a9cbdaac7ffc3b192b8677b410af4a78bc2228
11:39:50 Stored in directory: /home/omero/.cache/pip/wheels/f4/9e/a5/caf57b3ab5be95b791b32331e833a135756ff787a5d5189ab9
11:39:50 Successfully built omero-py
11:39:50 Installing collected packages: omero-py
11:39:50 Attempting uninstall: omero-py
11:39:50 Found existing installation: omero-py 5.19.3
11:39:50 Uninstalling omero-py-5.19.3:
11:39:51 Successfully uninstalled omero-py-5.19.3
11:39:54 Successfully installed omero-py-5.19.4.dev0
11:39:54 + for x in *.tar.gz
11:39:54 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
11:39:55 Processing ./omero_scripts-5.8.3.dev0.tar.gz
11:39:55 Installing build dependencies: started
11:39:57 Installing build dependencies: finished with status 'done'
11:39:57 Getting requirements to build wheel: started
11:39:57 Getting requirements to build wheel: finished with status 'done'
11:39:57 Preparing metadata (pyproject.toml): started
11:39:58 Preparing metadata (pyproject.toml): finished with status 'done'
11:39:58 Building wheels for collected packages: omero-scripts
11:39:58 Building wheel for omero-scripts (pyproject.toml): started
11:39:58 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
11:39:58 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116557 sha256=d8a31e685899bfb7d45c59612bcdfd83841cb28ac785bb8f6fb759ab1f6925bd
11:39:58 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
11:39:58 Successfully built omero-scripts
11:39:58 Installing collected packages: omero-scripts
11:39:58 Successfully installed omero-scripts-5.8.3.dev0
11:39:58 + for x in *.tar.gz
11:39:58 + pip install -U omero_web-5.26.1.dev0.tar.gz
11:39:59 Processing ./omero_web-5.26.1.dev0.tar.gz
11:39:59 Installing build dependencies: started
11:40:02 Installing build dependencies: finished with status 'done'
11:40:02 Getting requirements to build wheel: started
11:40:02 Getting requirements to build wheel: finished with status 'done'
11:40:02 Preparing metadata (pyproject.toml): started
11:40:02 Preparing metadata (pyproject.toml): finished with status 'done'
11:40:02 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.4.dev0)
11:40:02 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0)
11:40:02 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
11:40:03 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0)
11:40:03 Using cached Django-4.2.13-py3-none-any.whl.metadata (4.1 kB)
11:40:03 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0)
11:40:03 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
11:40:03 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0)
11:40:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
11:40:03 Collecting django-csp (from omero-web==5.26.1.dev0)
11:40:03 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
11:40:03 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0)
11:40:03 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
11:40:03 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0)
11:40:03 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
11:40:03 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0)
11:40:03 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.4.0)
11:40:03 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2024.1)
11:40:03 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.10.0)
11:40:03 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1)
11:40:03 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
11:40:03 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
11:40:03 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
11:40:03 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
11:40:03 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.19)
11:40:03 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4)
11:40:03 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0)
11:40:03 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.4)
11:40:03 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1)
11:40:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5)
11:40:03 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3)
11:40:04 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
11:40:04 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
11:40:04 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2)
11:40:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7)
11:40:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.6.2)
11:40:04 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
11:40:04 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
11:40:04 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
11:40:04 Using cached Django-4.2.13-py3-none-any.whl (8.0 MB)
11:40:04 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
11:40:04 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
11:40:04 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
11:40:04 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
11:40:04 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
11:40:04 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
11:40:04 Building wheels for collected packages: omero-web
11:40:04 Building wheel for omero-web (pyproject.toml): started
11:40:06 Building wheel for omero-web (pyproject.toml): finished with status 'done'
11:40:06 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2765448 sha256=99b810f6689bd80991620f74465d3a227bf335684f1b02e84893d51c6f34d1b8
11:40:06 Stored in directory: /home/omero/.cache/pip/wheels/39/0a/67/1d8a66c1c2b5dc08464077685312666fac69440af8767d0453
11:40:06 Successfully built omero-web
11:40:06 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
11:40:09 Successfully installed Django-4.2.13 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 sqlparse-0.5.0 typing-extensions-4.12.2 whitenoise-6.7.0
11:40:09 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
11:40:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
11:40:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
11:40:10 --2024-07-02 11:40:10-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
11:40:10 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.110.133, ...
11:40:10 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
11:40:10 HTTP request sent, awaiting response... 200 OK
11:40:10 Length: 94763 (93K) [text/plain]
11:40:10 Saving to: ‘Figure_To_Pdf.py’
11:40:10
11:40:10 0K .......... .......... .......... .......... .......... 54% 2.34M 0s
11:40:10 50K .......... .......... .......... .......... .. 100% 15.8M=0.02s
11:40:10
11:40:10 2024-07-02 11:40:10 (3.85 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763]
11:40:10
11:40:10 + chmod 755 Figure_To_Pdf.py
11:40:10 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
11:40:10 + omero config set omero.db.name OMERO-server
11:40:13 + omero config set omero.db.host pg
11:40:15 + omero config set omero.db.user postgres
11:40:16 + omero config set omero.data.dir /home/omero/omero-server-data
11:40:18 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
11:40:20 + omero config set omero.db.poolsize 25
11:40:22 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
11:40:23 + omero config set omero.security.trustStorePassword changeit
11:40:25 + omero config set omero.mail.config true
11:40:27 + omero config set omero.mail.from qa@openmicroscopy.org.uk
11:40:29 + omero config set omero.mail.host smtp.dundee.ac.uk
11:40:31 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
11:40:32 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
11:40:34 + omero certificates
11:40:36 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
11:40:36 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
11:40:36 + '[' false = true ']'
11:40:36 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
11:40:36 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
11:40:36 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
11:40:36 2024-07-02 11:40:36,833 [ omego.db] DEBUG dbcommand => upgrade
11:40:36 2024-07-02 11:40:36,833 [ omego.db] DEBUG dbhost => localhost
11:40:36 2024-07-02 11:40:36,833 [ omego.db] DEBUG dbname => OMERO-server
11:40:36 2024-07-02 11:40:36,833 [ omego.db] DEBUG dbpass => omero
11:40:36 2024-07-02 11:40:36,833 [ omego.db] DEBUG dbuser => omero
11:40:36 2024-07-02 11:40:36,833 [ omego.db] DEBUG rootpass => omero
11:40:36 2024-07-02 11:40:36,834 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
11:40:36 2024-07-02 11:40:36,834 [omego.extern] INFO Executing : omero version
11:40:38 OMERO.py version:
11:40:38 OMERO.server version:
11:40:38 5.6.3-475-e41a3b9be5-ice36
11:40:38 5.19.4.dev0
11:40:38 2024-07-02 11:40:38,846 [omego.extern] INFO Completed [2.013 s]
11:40:38 2024-07-02 11:40:38,847 [omego.extern] DEBUG Using omero CLI from omero
11:40:38 2024-07-02 11:40:38,847 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
11:40:38 2024-07-02 11:40:38,847 [omego.extern] INFO Running [current environment]: omero config get --show-password
11:40:38 2024-07-02 11:40:38,847 [omego.extern] INFO Executing : omero config get --show-password
11:40:40 2024-07-02 11:40:40,820 [omego.extern] INFO Completed [1.973 s]
11:40:40 2024-07-02 11:40:40,821 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
11:40:40 2024-07-02 11:40:40,821 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
11:40:41 2024-07-02 11:40:41,392 [omego.extern] INFO Completed [0.571 s]
11:40:41 2024-07-02 11:40:41,393 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
11:40:41 2024-07-02 11:40:41,393 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
11:40:41
11:40:41 2024-07-02 11:40:41,393 [omego.extern] INFO Running [current environment]: omero config get --show-password
11:40:41 2024-07-02 11:40:41,393 [omego.extern] INFO Executing : omero config get --show-password
11:40:43 2024-07-02 11:40:43,633 [omego.extern] INFO Completed [2.240 s]
11:40:43 2024-07-02 11:40:43,634 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
11:40:43 2024-07-02 11:40:43,634 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
11:40:43 2024-07-02 11:40:43,768 [omego.extern] INFO Completed [0.134 s]
11:40:43 2024-07-02 11:40:43,769 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.3") at port "5432".\n'
11:40:43 2024-07-02 11:40:43,769 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
11:40:43 2024-07-02 11:40:43,769 [omego.extern] INFO Running [current environment]: omero config get --show-password
11:40:43 2024-07-02 11:40:43,769 [omego.extern] INFO Executing : omero config get --show-password
11:40:45 2024-07-02 11:40:45,887 [omego.extern] INFO Completed [2.118 s]
11:40:45 2024-07-02 11:40:45,888 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
11:40:45 2024-07-02 11:40:45,888 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
11:40:46 2024-07-02 11:40:46,315 [omego.extern] INFO Completed [0.426 s]
11:40:46 2024-07-02 11:40:46,315 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
11:40:46 2024-07-02 11:40:46,315 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
11:40:46 2024-07-02 11:40:46,317 [ omego.db] INFO Database is already at OMERO5.4__0
11:40:46 + export LANG=en_US.UTF-8
11:40:46 + LANG=en_US.UTF-8
11:40:46 + export LANGUAGE=en_US:en
11:40:46 + LANGUAGE=en_US:en
11:40:46 + export LC_ALL=en_US.UTF-8
11:40:46 + LC_ALL=en_US.UTF-8
11:40:46 + BUILD_ID=DONT_KILL_ME
11:40:46 + omero admin start
11:40:58 No descriptor given. Using etc/grid/default.xml
11:41:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
11:41:14 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
11:41:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
11:41:14 Waiting on startup. Use CTRL-C to exit
11:41:15 + omero admin waitup
11:41:16 Waiting on startup. Use CTRL-C to exit
11:41:17 + omero admin diagnostics
11:41:19
11:41:19 ================================================================================
11:41:19 OMERO Diagnostics (admin)
11:41:19 ================================================================================
11:41:19
11:41:19 Commands: java -version 17.0.11 (/usr/bin/java)
11:41:19 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
11:41:19 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
11:41:19 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
11:41:19 Commands: psql --version 16.2 (/usr/bin/psql)
11:41:19 Commands: openssl version 3.0.71 (/usr/bin/openssl)
11:41:19
11:41:19 Component: OMERO.py 5.19.4.dev0
11:41:19 Component: OMERO.server 5.6.3-475-e41a3b9be5-ice36
11:41:19
11:41:19 Server: icegridnode running
11:41:19 Server: Blitz-0 active (pid = 2735, enabled)
11:41:19 Server: Indexer-0 active (pid = 2759, enabled)
11:41:19 Server: OMERO.Glacier2 active (pid = 2763, enabled)
11:41:19 Server: OMERO.IceStorm active (pid = 2792, enabled)
11:41:19 Server: Processor-0 activating (enabled)
11:41:19 Server: Tables-0 activating (enabled)
11:41:19
11:41:19 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
11:41:19 Log files: Blitz-0.log 21.7 KB errors=0 warnings=1
11:41:19 Log files: DropBox.log n/a
11:41:19 Log files: FileServer.log n/a
11:41:19 Log files: Indexer-0.log 2.6 KB
11:41:19 Log files: MonitorServer.log n/a
11:41:19 Log files: Processor-0.log 592 B
11:41:19 Log files: Tables-0.log 841 B
11:41:19 Log files: TestDropBox.log n/a
11:41:19 Log files: master.err empty
11:41:19 Log files: master.out 30.1 KB
11:41:19 Log files: Total size 0.06 MB
11:41:19
11:41:19
11:41:19 Environment:OMERO_HOME=(unset)
11:41:19 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
11:41:19 Environment:OMERO_NODE=(unset)
11:41:19 Environment:OMERO_MASTER=(unset)
11:41:19 Environment:OMERO_USERDIR=(unset)
11:41:19 Environment:OMERO_TMPDIR=(unset)
11:41:19 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:41:19 Environment:PYTHONPATH=(unset)
11:41:19 Environment:ICE_HOME=/opt/ice-3.6.5
11:41:19 Environment:LD_LIBRARY_PATH=(unset)
11:41:19 Environment:DYLD_LIBRARY_PATH=(unset)
11:41:19
11:41:19 OMERO SSL port:4064
11:41:19 OMERO TCP port:4063
11:41:19 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
11:41:19 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
11:41:19
11:41:19 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
11:41:19 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
11:41:19 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
11:41:19 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
11:41:19
11:41:19 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 2 July 2024 d77b08e4188db2b30429a099436c706e72707be4
11:41:19 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 2 July 2024 d77b08e4188db2b30429a099436c706e72707be4
11:41:19 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 2 July 2024 d77b08e4188db2b30429a099436c706e72707be4
11:41:19 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 2 July 2024 91644cf7038e3331f9a5770409285606f6a75b5e
11:41:19 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 2 July 2024 91644cf7038e3331f9a5770409285606f6a75b5e
11:41:19 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 2 July 2024 91644cf7038e3331f9a5770409285606f6a75b5e
11:41:19 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 2 July 2024 91644cf7038e3331f9a5770409285606f6a75b5e
11:41:19 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 2 July 2024 91644cf7038e3331f9a5770409285606f6a75b5e
11:41:19 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 2 July 2024 91644cf7038e3331f9a5770409285606f6a75b5e
11:41:19 Jar: lib/server/omero-blitz.jar jar 5.7.4-SNAPSHOT
11:41:19 Jar: lib/server/omero-common.jar jar 5.6.7-SNAPSHOT
11:41:19 Jar: lib/server/omero-gateway.jar jar 5.9.2-SNAPSHOT
11:41:19 Jar: lib/server/omero-model.jar jar 5.6.15-SNAPSHOT
11:41:19 Jar: lib/server/omero-renderer.jar jar 5.5.17-SNAPSHOT
11:41:19 Jar: lib/server/omero-romio.jar jar 5.7.7-SNAPSHOT
11:41:19 Jar: lib/server/omero-server.jar jar 5.6.12-SNAPSHOT
11:41:19 + deactivate
11:41:19 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:41:19 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:41:19 + export PATH
11:41:19 + unset _OLD_VIRTUAL_PATH
11:41:19 + '[' -n '' ']'
11:41:19 + '[' -n /bin/bash -o -n '' ']'
11:41:19 + hash -r
11:41:19 + '[' -n '' ']'
11:41:19 + unset VIRTUAL_ENV
11:41:19 + '[' '!' '' = nondestructive ']'
11:41:19 + unset -f deactivate
11:41:20 Finished: SUCCESS
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