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#14 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.3.9/maven-compat-3.3.9.jar
#14 442.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar (378 kB at 1.1 MB/s)
#14 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/3.5.2/maven-archiver-3.5.2.jar
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#14 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/3.3.3/maven-shared-utils-3.3.3.jar
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#14 442.5 Progress (4): 369/435 kB | 195/290 kB | 77/154 kB | 52/632 kB
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#14 442.6 Progress (4): 392 kB | 49 kB | 135/571 kB | 47 kB
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#14 442.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xdoc/1.0/doxia-module-xdoc-1.0.jar
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#14 442.6 Progress (2): 392 kB | 348/571 kB
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#14 442.6 Progress (1): 376/571 kB
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#14 442.6 Progress (3): 571 kB | 22 kB | 134/153 kB
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#14 442.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar (153 kB at 293 kB/s)
#14 442.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.pom
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#14 443.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean/3.4/xbean-3.4.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean/3.4/xbean-3.4.pom (19 kB at 772 kB/s)
#14 443.5 Downloading from central: https://repo.maven.apache.org/maven2/commons-logging/commons-logging-api/1.1/commons-logging-api-1.1.pom
#14 443.5 Progress (1): 4.1/5.3 kB
Progress (1): 5.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/commons-logging/commons-logging-api/1.1/commons-logging-api-1.1.pom (5.3 kB at 223 kB/s)
#14 443.5 Downloading from central: https://repo.maven.apache.org/maven2/com/google/collections/google-collections/1.0/google-collections-1.0.pom
#14 443.6 Progress (1): 2.5 kB
Downloaded from central: https://repo.maven.apache.org/maven2/com/google/collections/google-collections/1.0/google-collections-1.0.pom (2.5 kB at 99 kB/s)
#14 443.6 Downloading from central: https://repo.maven.apache.org/maven2/com/google/google/1/google-1.pom
#14 443.6 Progress (1): 1.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/com/google/google/1/google-1.pom (1.6 kB at 68 kB/s)
#14 443.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.pom
#14 443.6 Progress (1): 2.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.pom (2.3 kB at 95 kB/s)
#14 443.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.3/maven-scm-providers-git-1.3.pom
#14 443.6 Progress (1): 2.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.3/maven-scm-providers-git-1.3.pom (2.2 kB at 88 kB/s)
#14 443.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.3/maven-scm-providers-1.3.pom
#14 443.7 Progress (1): 3.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.3/maven-scm-providers-1.3.pom (3.6 kB at 158 kB/s)
#14 443.7 Downloading from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.pom
#14 443.7 Progress (1): 145 B
Downloaded from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.pom (145 B at 6.0 kB/s)
#14 443.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.pom
#14 443.7 Progress (1): 2.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.pom (2.2 kB at 91 kB/s)
#14 443.7 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.jar
#14 443.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.jar
#14 443.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.jar
#14 443.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/1.5.8/plexus-utils-1.5.8.jar
#14 443.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar
#14 443.7 Progress (1): 4.1/20 kB
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#14 443.7 [output clipped, log limit 2MiB reached]
#14 557.6 SLF4J: No SLF4J providers were found.
#14 557.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 557.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 564.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.332 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.653 [echo] isSnapshot = true
#16 2.763
#16 2.763 copy-jars:
#16 2.763
#16 2.763 deps-formats-api:
#16 2.844 [echo] isSnapshot = true
#16 2.907
#16 2.907 install-pom:
#16 3.106 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/pom-bio-formats-8.3.0-SNAPSHOT.pom
#16 3.113 [resolver:install] Installing ome:pom-bio-formats:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 3.119 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.122
#16 3.122 jar-formats-api:
#16 3.247 [echo] isSnapshot = true
#16 3.437
#16 3.437 init-title:
#16 3.437 [echo] ----------=========== formats-api ===========----------
#16 3.437
#16 3.437 init-timestamp:
#16 3.442
#16 3.442 init:
#16 3.442
#16 3.442 copy-resources:
#16 3.443 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.462 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.464
#16 3.464 compile:
#16 3.656 [resolver:resolve] Resolving artifacts
#16 3.685 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.361 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.361 [javac] import loci.common.ReflectedUniverse;
#16 4.361 [javac] ^
#16 4.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.561 [javac] int currentIndex = r.getCoreIndex();
#16 4.561 [javac] ^
#16 4.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.561 [javac] r.setCoreIndex(coreIndex);
#16 4.562 [javac] ^
#16 4.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.562 [javac] r.setCoreIndex(currentIndex);
#16 4.562 [javac] ^
#16 4.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.662 [javac] public void setCoreIndex(int no) {
#16 4.662 [javac] ^
#16 4.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.662 [javac] public int getCoreIndex() {
#16 4.662 [javac] ^
#16 4.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.663 [javac] public int coreIndexToSeries(int index)
#16 4.663 [javac] ^
#16 4.663 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.663 [javac] public int seriesToCoreIndex(int series)
#16 4.663 [javac] ^
#16 4.663 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.663 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.663 [javac] ^
#16 4.763 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.763 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.763 [javac] ^
#16 4.763 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.764 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.764 [javac] ^
#16 4.764 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.764 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.764 [javac] ^
#16 4.764 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.764 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.764 [javac] ^
#16 4.864 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.864 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.864 [javac] ^
#16 4.865 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.865 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.865 [javac] ^
#16 4.965 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.965 [javac] public void setCoreIndex(int no) {
#16 4.965 [javac] ^
#16 4.965 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.965 [javac] public int getCoreIndex() {
#16 4.965 [javac] ^
#16 4.965 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.965 [javac] public int coreIndexToSeries(int index) {
#16 4.966 [javac] ^
#16 4.966 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.966 [javac] public int seriesToCoreIndex(int series) {
#16 4.966 [javac] ^
#16 4.966 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.966 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.966 [javac] ^
#16 4.966 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.966 [javac] return getReader().getCoreMetadataList();
#16 4.966 [javac] ^
#16 4.967 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.967 [javac] return getReader().getCoreIndex();
#16 4.967 [javac] ^
#16 4.967 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.967 [javac] getReader().setCoreIndex(no);
#16 4.967 [javac] ^
#16 4.967 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.967 [javac] return getReader().seriesToCoreIndex(series);
#16 4.967 [javac] ^
#16 4.967 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.967 [javac] return getReader().coreIndexToSeries(index);
#16 4.967 [javac] ^
#16 4.967 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.967 [javac] public void setCoreIndex(int no) {
#16 4.967 [javac] ^
#16 4.967 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.967 [javac] public int getCoreIndex() {
#16 4.967 [javac] ^
#16 4.967 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.968 [javac] public int coreIndexToSeries(int index) {
#16 4.968 [javac] ^
#16 4.968 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.968 [javac] public int seriesToCoreIndex(int series) {
#16 4.968 [javac] ^
#16 4.968 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.968 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.968 [javac] ^
#16 4.968 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.968 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.968 [javac] ^
#16 4.968 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.968 [javac] return reader.getCoreIndex();
#16 4.968 [javac] ^
#16 4.968 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.968 [javac] reader.setCoreIndex(no);
#16 4.968 [javac] ^
#16 4.968 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.968 [javac] return reader.seriesToCoreIndex(series);
#16 4.968 [javac] ^
#16 4.969 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.969 [javac] return reader.coreIndexToSeries(index);
#16 4.969 [javac] ^
#16 5.137 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.137 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.137 [javac] 35 warnings
#16 5.137
#16 5.137 formats-api.jar:
#16 5.138 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.164 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.201 [resolver:install] Using default POM (ome:formats-api:8.3.0-SNAPSHOT)
#16 5.205 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.pom
#16 5.207 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.jar
#16 5.209 [resolver:install] Installing ome:formats-api:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 5.211 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.212
#16 5.212 deps-turbojpeg:
#16 5.212
#16 5.212 jar-turbojpeg:
#16 5.324 [echo] isSnapshot = true
#16 5.501
#16 5.501 init-title:
#16 5.502 [echo] ----------=========== turbojpeg ===========----------
#16 5.502
#16 5.502 init-timestamp:
#16 5.502
#16 5.502 init:
#16 5.502
#16 5.502 copy-resources:
#16 5.502 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.504
#16 5.504 compile:
#16 5.515 [resolver:resolve] Resolving artifacts
#16 5.520 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.246
#16 6.246 jar:
#16 6.250 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.446 [resolver:install] Using default POM (ome:turbojpeg:8.3.0-SNAPSHOT)
#16 6.455 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.pom
#16 6.458 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.jar
#16 6.460 [resolver:install] Installing ome:turbojpeg:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 6.464 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.465
#16 6.465 deps-formats-bsd:
#16 6.465
#16 6.465 jar-formats-bsd:
#16 6.568 [echo] isSnapshot = true
#16 6.739
#16 6.739 init-title:
#16 6.739 [echo] ----------=========== formats-bsd ===========----------
#16 6.739
#16 6.739 init-timestamp:
#16 6.740
#16 6.740 init:
#16 6.740
#16 6.740 copy-resources:
#16 6.740 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.743 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.744
#16 6.744 compile:
#16 6.956 [resolver:resolve] Resolving artifacts
#16 6.987 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.096 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.096 [javac] import loci.common.ReflectedUniverse;
#16 8.096 [javac] ^
#16 8.496 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.496 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.496 [javac] ^
#16 8.496 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.496 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.496 [javac] ^
#16 8.496 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.496 [javac] int n = reader.getCoreMetadataList().size();
#16 8.496 [javac] ^
#16 8.496 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.496 [javac] reader.setCoreIndex(coreIndex);
#16 8.496 [javac] ^
#16 8.496 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.496 [javac] int n = reader.getCoreMetadataList().size();
#16 8.496 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.497 [javac] int n = reader.getCoreMetadataList().size();
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.497 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.497 [javac] int n = reader.getCoreMetadataList().size();
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.497 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.497 [javac] int n = reader.getCoreMetadataList().size();
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.497 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.497 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.497 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.497 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.497 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.497 [javac] ^
#16 8.497 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.497 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.497 [javac] ^
#16 8.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.498 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.498 [javac] ^
#16 8.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.498 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.498 [javac] ^
#16 8.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.498 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.498 [javac] ^
#16 8.598 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.598 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.598 [javac] ^
#16 8.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.698 [javac] BitWriter out = new BitWriter();
#16 8.698 [javac] ^
#16 8.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.698 [javac] BitWriter out = new BitWriter();
#16 8.698 [javac] ^
#16 9.699 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.699 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.699 [javac] ^
#16 9.699 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.699 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.699 [javac] ^
#16 9.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.800 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.800 [javac] ^
#16 9.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.800 [javac] protected ReflectedUniverse r;
#16 9.800 [javac] ^
#16 9.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.800 [javac] r = new ReflectedUniverse();
#16 9.800 [javac] ^
#16 9.900 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.900 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.900 [javac] ^
#16 9.900 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.900 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.900 [javac] ^
#16 9.900 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.900 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.900 [javac] ^
#16 9.900 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.900 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.900 [javac] ^
#16 9.900 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.901 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.901 [javac] ^
#16 9.901 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.901 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.901 [javac] ^
#16 9.901 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.901 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.901 [javac] ^
#16 9.901 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.901 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.901 [javac] ^
#16 9.901 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.901 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.901 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.00 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.00 [javac] ^
#16 10.00 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.00 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.00 [javac] 38 warnings
#16 10.17
#16 10.17 formats-bsd.jar:
#16 10.17 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.30 [resolver:install] Using default POM (ome:formats-bsd:8.3.0-SNAPSHOT)
#16 10.31 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.pom
#16 10.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.jar
#16 10.31 [resolver:install] Installing ome:formats-bsd:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 10.31 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.31
#16 10.31 deps-formats-gpl:
#16 10.31
#16 10.31 jar-formats-gpl:
#16 10.42 [echo] isSnapshot = true
#16 10.59
#16 10.59 init-title:
#16 10.59 [echo] ----------=========== formats-gpl ===========----------
#16 10.59
#16 10.59 init-timestamp:
#16 10.59
#16 10.59 init:
#16 10.59
#16 10.59 copy-resources:
#16 10.60 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.60 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.60
#16 10.60 compile:
#16 11.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.33 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.93 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.93 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.94 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.06 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.07 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.09 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.20 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.24 [resolver:resolve] Resolving artifacts
#16 12.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.26 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.32 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.32 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.66 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.66 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.68 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.79 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.79 [javac] import loci.formats.codec.BitWriter;
#16 13.79 [javac] ^
#16 13.79 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.79 [javac] import loci.formats.codec.BitWriter;
#16 13.79 [javac] ^
#16 15.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.69 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.69 [javac] ^
#16 15.69 [javac] cast to Object for a varargs call
#16 15.69 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.69 [javac] BitWriter bits = null;
#16 15.69 [javac] ^
#16 15.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.69 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.69 [javac] ^
#16 15.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.99 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.99 [javac] ^
#16 16.29 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.29 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.29 [javac] ^
#16 16.29 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.29 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.29 [javac] ^
#16 16.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.58 [javac] Variable variable = group.findVariable(variableName);
#16 16.58 [javac] ^
#16 16.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.58 [javac] Variable variable = group.findVariable(variableName);
#16 16.58 [javac] ^
#16 16.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.58 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.58 [javac] ^
#16 16.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.58 [javac] String groupName = group.getName();
#16 16.58 [javac] ^
#16 16.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.58 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.58 [javac] ^
#16 16.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.59 [javac] String variableName = variable.getName();
#16 16.59 [javac] ^
#16 16.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 16.59 [javac] Group nextParent = parent.findGroup(token);
#16 16.59 [javac] ^
#16 16.59 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.59 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.59 [javac] 15 warnings
#16 16.59
#16 16.59 formats-gpl.jar:
#16 16.60 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.76 [resolver:install] Using default POM (ome:formats-gpl:8.3.0-SNAPSHOT)
#16 16.77 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.pom
#16 16.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.jar
#16 16.77 [resolver:install] Installing ome:formats-gpl:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 16.78 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.78
#16 16.78 deps-bio-formats-plugins:
#16 16.78
#16 16.78 jar-bio-formats-plugins:
#16 16.88 [echo] isSnapshot = true
#16 17.06
#16 17.06 init-title:
#16 17.06 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.06
#16 17.06 init-timestamp:
#16 17.06
#16 17.06 init:
#16 17.06
#16 17.06 copy-resources:
#16 17.06 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.07 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.07
#16 17.07 compile:
#16 17.32 [resolver:resolve] Resolving artifacts
#16 17.34 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.15 [javac] import loci.common.ReflectedUniverse;
#16 18.15 [javac] ^
#16 18.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.15 [javac] import loci.common.ReflectedUniverse;
#16 18.15 [javac] ^
#16 18.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.55 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.55 [javac] ^
#16 18.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.75 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.75 [javac] ^
#16 18.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.75 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.75 [javac] ^
#16 18.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.85 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.85 [javac] ^
#16 18.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.85 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.85 [javac] ^
#16 19.12 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.12 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.12 [javac] 7 warnings
#16 19.12
#16 19.12 bio-formats-plugins.jar:
#16 19.12 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.16 [resolver:install] Using default POM (ome:bio-formats_plugins:8.3.0-SNAPSHOT)
#16 19.16 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.pom
#16 19.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.jar
#16 19.17 [resolver:install] Installing ome:bio-formats_plugins:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 19.17 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.17
#16 19.17 deps-bio-formats-tools:
#16 19.17
#16 19.17 jar-bio-formats-tools:
#16 19.27 [echo] isSnapshot = true
#16 19.46
#16 19.46 init-title:
#16 19.46 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.46
#16 19.46 init-timestamp:
#16 19.46
#16 19.46 init:
#16 19.46
#16 19.46 copy-resources:
#16 19.46 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.46
#16 19.46 compile:
#16 19.74 [resolver:resolve] Resolving artifacts
#16 19.75 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.75
#16 20.75 bio-formats-tools.jar:
#16 20.75 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.76 [resolver:install] Using default POM (ome:bio-formats-tools:8.3.0-SNAPSHOT)
#16 20.76 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.pom
#16 20.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.jar
#16 20.77 [resolver:install] Installing ome:bio-formats-tools:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 20.77 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.77
#16 20.77 deps-tests:
#16 20.77
#16 20.77 jar-tests:
#16 20.87 [echo] isSnapshot = true
#16 21.04
#16 21.04 init-title:
#16 21.04 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.04
#16 21.04 init-timestamp:
#16 21.04
#16 21.04 init:
#16 21.04
#16 21.04 copy-resources:
#16 21.04 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.04
#16 21.04 compile:
#16 21.41 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.49 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.85 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.87 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.50 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.94 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 22.97 [resolver:resolve] Resolving artifacts
#16 22.98 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.02 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.89 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.90 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 24.30 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 24.70 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.71 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.63 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.63 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.63 [javac] ^
#16 25.63 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.63 [javac] reader.setCoreIndex(index);
#16 25.63 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2341: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.93 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.93 [javac] ^
#16 25.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2507: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.93 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.93 [javac] ^
#16 26.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.13 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.13 [javac] ^
#16 26.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.13 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.13 [javac] ^
#16 26.18 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.18 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.18 [javac] 6 warnings
#16 26.18
#16 26.18 tests.jar:
#16 26.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.20 [resolver:install] Using default POM (ome:test-suite:8.3.0-SNAPSHOT)
#16 26.20 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.pom
#16 26.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.jar
#16 26.21 [resolver:install] Installing ome:test-suite:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 26.21 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.21
#16 26.21 jars:
#16 26.21
#16 26.21 copy-jars:
#16 26.21
#16 26.21 deps-formats-api:
#16 26.26 [echo] isSnapshot = true
#16 26.36
#16 26.36 install-pom:
#16 26.52 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/pom-bio-formats-8.3.0-SNAPSHOT.pom
#16 26.53 [resolver:install] Installing ome:pom-bio-formats:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 26.53 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.53
#16 26.53 jar-formats-api:
#16 26.62 [echo] isSnapshot = true
#16 26.80
#16 26.80 init-title:
#16 26.80 [echo] ----------=========== formats-api ===========----------
#16 26.80
#16 26.80 init-timestamp:
#16 26.80
#16 26.80 init:
#16 26.80
#16 26.80 copy-resources:
#16 26.80
#16 26.80 compile:
#16 26.94 [resolver:resolve] Resolving artifacts
#16 26.95
#16 26.95 formats-api.jar:
#16 26.97 [resolver:install] Using default POM (ome:formats-api:8.3.0-SNAPSHOT)
#16 26.97 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.pom
#16 26.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.jar
#16 26.98 [resolver:install] Installing ome:formats-api:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 26.98 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.98
#16 26.98 deps-turbojpeg:
#16 26.98
#16 26.98 jar-turbojpeg:
#16 27.20 [echo] isSnapshot = true
#16 27.36
#16 27.36 init-title:
#16 27.36 [echo] ----------=========== turbojpeg ===========----------
#16 27.36
#16 27.36 init-timestamp:
#16 27.36
#16 27.36 init:
#16 27.36
#16 27.36 copy-resources:
#16 27.36
#16 27.36 compile:
#16 27.37 [resolver:resolve] Resolving artifacts
#16 27.38
#16 27.38 jar:
#16 27.38 [resolver:install] Using default POM (ome:turbojpeg:8.3.0-SNAPSHOT)
#16 27.39 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.pom
#16 27.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.jar
#16 27.39 [resolver:install] Installing ome:turbojpeg:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 27.40 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.40
#16 27.40 deps-formats-bsd:
#16 27.40
#16 27.40 jar-formats-bsd:
#16 27.49 [echo] isSnapshot = true
#16 27.65
#16 27.65 init-title:
#16 27.65 [echo] ----------=========== formats-bsd ===========----------
#16 27.65
#16 27.65 init-timestamp:
#16 27.65
#16 27.65 init:
#16 27.65
#16 27.65 copy-resources:
#16 27.65
#16 27.65 compile:
#16 27.85 [resolver:resolve] Resolving artifacts
#16 27.87
#16 27.87 formats-bsd.jar:
#16 27.91 [resolver:install] Using default POM (ome:formats-bsd:8.3.0-SNAPSHOT)
#16 27.91 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.pom
#16 27.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.jar
#16 27.91 [resolver:install] Installing ome:formats-bsd:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 27.92 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.92
#16 27.92 deps-formats-gpl:
#16 27.92
#16 27.92 jar-formats-gpl:
#16 28.01 [echo] isSnapshot = true
#16 28.18
#16 28.18 init-title:
#16 28.18 [echo] ----------=========== formats-gpl ===========----------
#16 28.18
#16 28.18 init-timestamp:
#16 28.18
#16 28.18 init:
#16 28.18
#16 28.18 copy-resources:
#16 28.18
#16 28.18 compile:
#16 28.42 [resolver:resolve] Resolving artifacts
#16 28.44
#16 28.44 formats-gpl.jar:
#16 28.48 [resolver:install] Using default POM (ome:formats-gpl:8.3.0-SNAPSHOT)
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.pom
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.jar
#16 28.48 [resolver:install] Installing ome:formats-gpl:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 28.49 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.49
#16 28.49 deps-bio-formats-plugins:
#16 28.49
#16 28.49 jar-bio-formats-plugins:
#16 28.58 [echo] isSnapshot = true
#16 28.74
#16 28.74 init-title:
#16 28.74 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.74
#16 28.74 init-timestamp:
#16 28.74
#16 28.74 init:
#16 28.74
#16 28.74 copy-resources:
#16 28.74
#16 28.74 compile:
#16 28.99 [resolver:resolve] Resolving artifacts
#16 29.00
#16 29.00 bio-formats-plugins.jar:
#16 29.01 [resolver:install] Using default POM (ome:bio-formats_plugins:8.3.0-SNAPSHOT)
#16 29.02 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.pom
#16 29.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.jar
#16 29.02 [resolver:install] Installing ome:bio-formats_plugins:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 29.02 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.03
#16 29.03 deps-bio-formats-tools:
#16 29.03
#16 29.03 jar-bio-formats-tools:
#16 29.12 [echo] isSnapshot = true
#16 29.28
#16 29.28 init-title:
#16 29.28 [echo] ----------=========== bio-formats-tools ===========----------
#16 29.28
#16 29.28 init-timestamp:
#16 29.28
#16 29.28 init:
#16 29.28
#16 29.28 copy-resources:
#16 29.28
#16 29.28 compile:
#16 29.53 [resolver:resolve] Resolving artifacts
#16 29.55
#16 29.55 bio-formats-tools.jar:
#16 29.55 [resolver:install] Using default POM (ome:bio-formats-tools:8.3.0-SNAPSHOT)
#16 29.56 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.pom
#16 29.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.jar
#16 29.56 [resolver:install] Installing ome:bio-formats-tools:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 29.56 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.56
#16 29.56 deps-tests:
#16 29.56
#16 29.56 jar-tests:
#16 29.66 [echo] isSnapshot = true
#16 29.84
#16 29.84 init-title:
#16 29.84 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.84
#16 29.84 init-timestamp:
#16 29.84
#16 29.84 init:
#16 29.84
#16 29.84 copy-resources:
#16 29.84
#16 29.84 compile:
#16 30.10 [resolver:resolve] Resolving artifacts
#16 30.11
#16 30.11 tests.jar:
#16 30.12 [resolver:install] Using default POM (ome:test-suite:8.3.0-SNAPSHOT)
#16 30.12 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.pom
#16 30.12 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/test-suite-8.3.0-SNAPSHOT.jar
#16 30.12 [resolver:install] Installing ome:test-suite:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 30.13 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.13
#16 30.13 jars:
#16 30.13
#16 30.13 tools:
#16 30.13 [echo] ----------=========== bioformats_package ===========----------
#16 30.23 [echo] isSnapshot = true
#16 30.44
#16 30.44 init-timestamp:
#16 30.44
#16 30.44 bundle:
#16 30.69 [resolver:resolve] Resolving artifacts
#16 30.70 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.3.0-SNAPSHOT/bio-formats_plugins-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.76 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.79 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.80 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.87 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.89 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.95 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.97 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.23 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.31 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.38 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.40 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.40 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.15 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.15 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.16 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.16 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.27 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.34 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.41 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.3.0-SNAPSHOT/formats-api-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.43 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.3.0-SNAPSHOT/formats-bsd-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.3.0-SNAPSHOT/turbojpeg-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.73 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.74 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.85 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.88 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.42 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.45 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.48 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.60 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.62 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.64 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.65 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.92 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.00 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.3.0-SNAPSHOT/formats-gpl-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.20 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.20 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.34 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.35 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.89 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.91 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.04 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.10 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.10 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.12 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.18 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.22 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.66 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.68 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.68 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.70 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.3.0-SNAPSHOT/bio-formats-tools-8.3.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.70 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.74 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.18 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.30 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.75 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 44.39 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.28 [resolver:install] Using default POM (ome:bioformats_package:8.3.0-SNAPSHOT)
#16 45.29 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.3.0-SNAPSHOT/bioformats_package-8.3.0-SNAPSHOT.pom
#16 45.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.3.0-SNAPSHOT/bioformats_package-8.3.0-SNAPSHOT.jar
#16 45.34 [resolver:install] Installing ome:bioformats_package:8.3.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.3.0-SNAPSHOT/maven-metadata-local.xml
#16 45.34 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 45.35
#16 45.35 BUILD SUCCESSFUL
#16 45.35 Total time: 45 seconds
#16 DONE 46.6s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.0s done
#18 writing image sha256:22128fda73c2643009aa1b44d949a4f762f89bbc4e6093ab323509e087f5a30f done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.0s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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