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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8213007378390932099.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63117_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:21:53,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:21:53,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:21:53,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:21:53,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:21:53,554 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:21:53,554 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:21:53,554 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:21:53,554 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:21:53,555 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7e0b85f9 - End of configuration. [testng] 13:21:53,555 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6a28ffa4 - Registering current configuration as safe fallback point [testng] 13:21:53,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48ae9b55 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 580 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 13:21:53,565] [main] java.version = 1.8.0_342 [testng] 13:21:53,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:21:53,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:21:53,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_13-21-53.log] [testng] 13:21:53,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 13:21:53,830] [main] testng.directory = /data [testng] [2025-05-19 13:21:53,830] [main] testng.configDirectory = /config [testng] [2025-05-19 13:21:54,044] [main] testng.multiplier = 1.0 [testng] [2025-05-19 13:21:54,044] [main] testng.in-memory = false [testng] [2025-05-19 13:21:54,044] [main] testng.allow-missing = false [testng] [2025-05-19 13:21:54,044] [main] user.language = fr [testng] [2025-05-19 13:21:54,044] [main] user.country = FR [testng] [2025-05-19 13:21:54,044] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 13:22:29,091] [main] ---------------------------------------- [testng] [2025-05-19 13:22:29,091] [main] Total files: 17 [testng] [2025-05-19 13:22:29,091] [main] Scan time: 35.046 s (2061 ms/file) [testng] [2025-05-19 13:22:29,091] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 13:23:25,459] [pool-1-thread-1] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 13:23:25,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:23:25,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:25,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_13-23-25.log] [testng] 13:23:25,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f118566 - End of configuration. [testng] [2025-05-19 13:23:28,743] [pool-1-thread-12] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 13:23:28,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:23:28,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:28,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_13-23-28.log] [testng] 13:23:28,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d527cc4 - End of configuration. [testng] [2025-05-19 13:23:31,862] [pool-1-thread-11] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 13:23:31,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:23:31,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:31,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_13-23-31.log] [testng] 13:23:31,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57598c95 - End of configuration. [testng] [2025-05-19 13:23:34,763] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 13:23:34,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:23:34,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:34,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_13-23-34.log] [testng] 13:23:34,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2634060 - End of configuration. [testng] [2025-05-19 13:23:37,941] [pool-1-thread-9] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 13:23:37,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:23:37,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:37,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_13-23-37.log] [testng] 13:23:37,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f5a89bb - End of configuration. [testng] [2025-05-19 13:23:41,221] [pool-1-thread-8] Initializing /data/christopher/Color48 Copy.ipm: [testng] 13:23:41,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:23:41,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:41,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_13-23-41.log] [testng] 13:23:41,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b90401b - End of configuration. [testng] [2025-05-19 13:23:43,905] [pool-1-thread-7] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 13:23:43,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:23:43,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:43,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_13-23-43.log] [testng] 13:23:43,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72dec48c - End of configuration. [testng] [2025-05-19 13:23:46,481] [pool-1-thread-6] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 13:23:46,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:23:46,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:46,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_13-23-46.log] [testng] 13:23:46,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275d9e41 - End of configuration. [testng] [2025-05-19 13:23:48,815] [pool-1-thread-5] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 13:23:48,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:23:48,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:48,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_13-23-48.log] [testng] 13:23:48,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52bfe7a7 - End of configuration. [testng] [2025-05-19 13:23:51,758] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 13:23:51,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:23:51,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:51,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_13-23-51.log] [testng] 13:23:51,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@534b3b30 - End of configuration. [testng] [2025-05-19 13:23:54,744] [pool-1-thread-3] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 13:23:54,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:23:54,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:54,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_13-23-54.log] [testng] 13:23:54,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3983179c - End of configuration. [testng] [2025-05-19 13:23:57,537] [pool-1-thread-2] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 13:23:57,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:23:57,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:23:57,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_13-23-57.log] [testng] 13:23:57,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2910e6af - End of configuration. [testng] [2025-05-19 13:24:28,628] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] [2025-05-19 13:24:31,564] [pool-1-thread-4] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] [2025-05-19 13:24:34,554] [pool-1-thread-6] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2025-05-19 13:24:37,304] [pool-1-thread-1] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [2025-05-19 13:24:39,628] [pool-1-thread-9] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 29 seconds Finished: SUCCESS