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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14304233229505510080.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63118_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:25:14,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 13:25:14,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 13:25:14,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:25:14,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:25:14,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:25:14,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:25:14,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:25:14,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:25:14,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:25:14,748 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:25:14,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:25:14,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:25:14,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:25:14,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:25:15,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:25:15,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:25:15,023 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:25:15,024 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:25:15,024 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:25:15,024 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:25:15,024 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 13:25:15,025 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 13:25:15,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 13:25:15,036] [main] java.version = 1.8.0_342 [testng] 13:25:15,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:25:15,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:25:15,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_13-25-15.log] [testng] 13:25:15,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 13:25:15,090] [main] testng.directory = /data [testng] [2025-05-19 13:25:15,090] [main] testng.configDirectory = /config [testng] [2025-05-19 13:25:15,102] [main] testng.multiplier = 1.0 [testng] [2025-05-19 13:25:15,103] [main] testng.in-memory = false [testng] [2025-05-19 13:25:15,103] [main] testng.allow-missing = false [testng] [2025-05-19 13:25:15,103] [main] user.language = fr [testng] [2025-05-19 13:25:15,103] [main] user.country = FR [testng] [2025-05-19 13:25:15,103] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 13:30:04,856] [main] ---------------------------------------- [testng] [2025-05-19 13:30:04,856] [main] Total files: 31 [testng] [2025-05-19 13:30:04,856] [main] Scan time: 289.753 s (9346 ms/file) [testng] [2025-05-19 13:30:04,856] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 13:36:44,550] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jbig: [testng] 13:36:44,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:36:44,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:36:44,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_13-36-44.log] [testng] 13:36:44,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65c49207 - End of configuration. [testng] [2025-05-19 13:37:09,306] [pool-1-thread-12] Initializing /data/venu/Multichannel 3.jp2: [testng] 13:37:09,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:37:09,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:37:09,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_13-37-09.log] [testng] 13:37:09,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a760293 - End of configuration. [testng] [2025-05-19 13:37:20,405] [pool-1-thread-11] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] 13:37:20,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:37:20,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:37:20,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_13-37-20.log] [testng] 13:37:20,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a4bc7b5 - End of configuration. [testng] [2025-05-19 13:37:29,571] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jp2: [testng] 13:37:29,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:37:29,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:37:29,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_13-37-29.log] [testng] 13:37:29,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be9d8bb - End of configuration. [testng] [2025-05-19 13:37:41,053] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 13:37:41,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:37:41,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:37:41,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_13-37-41.log] [testng] 13:37:41,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b5bba60 - End of configuration. [testng] [2025-05-19 13:37:52,991] [pool-1-thread-8] Initializing /data/david/000000_000001.jpx: [testng] 13:37:52,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:37:52,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:37:52,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_13-37-52.log] [testng] 13:37:52,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6157ba45 - End of configuration. [testng] [2025-05-19 13:38:04,905] [pool-1-thread-7] Initializing /data/vikram/Captured 4.jp2: [testng] 13:38:04,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:38:04,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:38:04,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_13-38-04.log] [testng] 13:38:04,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be3d06c - End of configuration. [testng] [2025-05-19 13:38:16,728] [pool-1-thread-6] Initializing /data/kraig/head.jp2: [testng] 13:38:16,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:38:16,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:38:16,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_13-38-16.log] [testng] 13:38:16,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72a0c69a - End of configuration. [testng] [2025-05-19 13:38:28,354] [pool-1-thread-5] Initializing /data/frans/flower.jp2: [testng] 13:38:28,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:38:28,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:38:28,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_13-38-28.log] [testng] 13:38:28,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@297d567f - End of configuration. [testng] [2025-05-19 13:38:38,818] [pool-1-thread-4] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 13:38:38,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:38:38,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:38:38,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_13-38-38.log] [testng] 13:38:38,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dab8752 - End of configuration. [testng] [2025-05-19 13:38:48,604] [pool-1-thread-3] Initializing /data/vikram/Captured 1.jp2: [testng] 13:38:48,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:38:48,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:38:48,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_13-38-48.log] [testng] 13:38:48,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c81e74 - End of configuration. [testng] [2025-05-19 13:38:58,134] [pool-1-thread-2] Initializing /data/vikram/Captured 5.jp2: [testng] 13:38:58,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:38:58,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:38:58,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_13-38-58.log] [testng] 13:38:58,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0d26c6 - End of configuration. [testng] [2025-05-19 13:40:09,448] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2025-05-19 13:40:32,865] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-05-19 13:40:43,287] [pool-1-thread-2] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-05-19 13:40:53,373] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-05-19 13:41:03,372] [pool-1-thread-7] Initializing /data/vikram/Captured 3.jp2: [testng] [2025-05-19 13:41:14,472] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-05-19 13:41:39,411] [pool-1-thread-11] Initializing /data/david/C1R1_FOS.jp2: [testng] [2025-05-19 13:41:49,690] [pool-1-thread-5] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2025-05-19 13:41:58,266] [pool-1-thread-9] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2025-05-19 13:42:07,112] [pool-1-thread-12] Initializing /data/david/multichannel-2d test.jp2: [testng] [2025-05-19 13:42:39,607] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-05-19 13:43:10,137] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-05-19 13:43:18,052] [pool-1-thread-7] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2025-05-19 13:43:26,110] [pool-1-thread-2] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-05-19 13:43:33,269] [pool-1-thread-9] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2025-05-19 13:43:40,489] [pool-1-thread-5] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2025-05-19 13:43:48,754] [pool-1-thread-11] Initializing /data/david/cy5-tph.jp2: [testng] [2025-05-19 13:43:56,966] [pool-1-thread-6] Initializing /data/vikram/Captured 2.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 34 seconds Finished: SUCCESS