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#14 445.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar
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#14 445.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar (37 kB at 270 kB/s)
#14 445.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.pom
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#14 445.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.jar
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#14 445.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar
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#14 445.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar
#14 445.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.1.1/maven-repository-metadata-3.1.1.jar (25 kB at 200 kB/s)
#14 445.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar (45 kB at 353 kB/s)
#14 445.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar
#14 445.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar
#14 445.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar (160 kB at 1.1 MB/s)
#14 445.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar
#14 445.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar (60 kB at 397 kB/s)
#14 445.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar
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#14 445.4 Progress (4): 134 kB | 18 kB | 197 kB | 0/1.5 MB
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#14 445.4 Progress (3): 134 kB | 197 kB | 0.2/1.5 MB
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#14 445.4 Progress (3): 134 kB | 197 kB | 0.2/1.5 MB
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#14 445.4 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar
#14 445.4 Progress (2): 134 kB | 0.5/1.5 MB
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#14 445.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar
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Progress (5): 111 kB | 269 kB | 16 kB | 0.6/3
#14 447.0 [output clipped, log limit 2MiB reached]
#14 579.1 SLF4J: No SLF4J providers were found.
#14 579.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 579.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 588.0s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.283 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.681 [echo] isSnapshot = true
#16 2.797
#16 2.797 copy-jars:
#16 2.797
#16 2.797 deps-formats-api:
#16 2.884 [echo] isSnapshot = true
#16 2.943
#16 2.943 install-pom:
#16 3.131 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 3.169 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.173 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.174
#16 3.174 jar-formats-api:
#16 3.284 [echo] isSnapshot = true
#16 3.469
#16 3.469 init-title:
#16 3.469 [echo] ----------=========== formats-api ===========----------
#16 3.469
#16 3.469 init-timestamp:
#16 3.475
#16 3.475 init:
#16 3.475
#16 3.475 copy-resources:
#16 3.476 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.489 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.491
#16 3.491 compile:
#16 3.670 [resolver:resolve] Resolving artifacts
#16 3.697 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.908 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.508 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.508 [javac] import loci.common.ReflectedUniverse;
#16 4.508 [javac] ^
#16 4.709 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.709 [javac] int currentIndex = r.getCoreIndex();
#16 4.709 [javac] ^
#16 4.709 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.709 [javac] r.setCoreIndex(coreIndex);
#16 4.709 [javac] ^
#16 4.709 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.709 [javac] r.setCoreIndex(currentIndex);
#16 4.709 [javac] ^
#16 4.810 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.810 [javac] public void setCoreIndex(int no) {
#16 4.810 [javac] ^
#16 4.810 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.810 [javac] public int getCoreIndex() {
#16 4.810 [javac] ^
#16 4.810 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.810 [javac] public int coreIndexToSeries(int index)
#16 4.810 [javac] ^
#16 4.810 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.810 [javac] public int seriesToCoreIndex(int series)
#16 4.810 [javac] ^
#16 4.810 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.810 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.810 [javac] ^
#16 4.911 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.911 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.911 [javac] ^
#16 4.911 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.911 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.911 [javac] ^
#16 4.911 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.911 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.911 [javac] ^
#16 4.911 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.911 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.911 [javac] ^
#16 5.012 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.012 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.012 [javac] ^
#16 5.012 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.012 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.012 [javac] ^
#16 5.112 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.113 [javac] public void setCoreIndex(int no) {
#16 5.113 [javac] ^
#16 5.113 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.113 [javac] public int getCoreIndex() {
#16 5.113 [javac] ^
#16 5.113 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.113 [javac] public int coreIndexToSeries(int index) {
#16 5.113 [javac] ^
#16 5.113 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.113 [javac] public int seriesToCoreIndex(int series) {
#16 5.113 [javac] ^
#16 5.113 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.113 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.113 [javac] ^
#16 5.113 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.113 [javac] return getReader().getCoreMetadataList();
#16 5.113 [javac] ^
#16 5.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.114 [javac] return getReader().getCoreIndex();
#16 5.114 [javac] ^
#16 5.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.114 [javac] getReader().setCoreIndex(no);
#16 5.114 [javac] ^
#16 5.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.114 [javac] return getReader().seriesToCoreIndex(series);
#16 5.114 [javac] ^
#16 5.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.114 [javac] return getReader().coreIndexToSeries(index);
#16 5.114 [javac] ^
#16 5.214 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.214 [javac] public void setCoreIndex(int no) {
#16 5.214 [javac] ^
#16 5.214 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.214 [javac] public int getCoreIndex() {
#16 5.214 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.215 [javac] public int coreIndexToSeries(int index) {
#16 5.215 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.215 [javac] public int seriesToCoreIndex(int series) {
#16 5.215 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.215 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.215 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.215 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.215 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.215 [javac] return reader.getCoreIndex();
#16 5.215 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.215 [javac] reader.setCoreIndex(no);
#16 5.215 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.215 [javac] return reader.seriesToCoreIndex(series);
#16 5.215 [javac] ^
#16 5.215 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.215 [javac] return reader.coreIndexToSeries(index);
#16 5.216 [javac] ^
#16 5.414 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.414 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.414 [javac] 36 warnings
#16 5.415
#16 5.415 formats-api.jar:
#16 5.415 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.438 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.469 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 5.473 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 5.484 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 5.486 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 5.488 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.489
#16 5.489 deps-turbojpeg:
#16 5.490
#16 5.490 jar-turbojpeg:
#16 5.592 [echo] isSnapshot = true
#16 5.767
#16 5.767 init-title:
#16 5.767 [echo] ----------=========== turbojpeg ===========----------
#16 5.767
#16 5.767 init-timestamp:
#16 5.768
#16 5.768 init:
#16 5.768
#16 5.768 copy-resources:
#16 5.768 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.769
#16 5.769 compile:
#16 5.782 [resolver:resolve] Resolving artifacts
#16 5.786 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.989 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.590 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 6.590 [javac] protected void finalize() throws Throwable {
#16 6.590 [javac] ^
#16 6.590 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 6.590 [javac] super.finalize();
#16 6.590 [javac] ^
#16 6.590 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 6.590 [javac] protected void finalize() throws Throwable {
#16 6.590 [javac] ^
#16 6.590 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 6.590 [javac] super.finalize();
#16 6.590 [javac] ^
#16 6.664 [javac] 5 warnings
#16 6.664
#16 6.664 jar:
#16 6.669 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.855 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 6.864 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 6.876 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 6.879 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 6.883 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.884
#16 6.884 deps-formats-bsd:
#16 6.884
#16 6.884 jar-formats-bsd:
#16 6.983 [echo] isSnapshot = true
#16 7.132
#16 7.132 init-title:
#16 7.132 [echo] ----------=========== formats-bsd ===========----------
#16 7.133
#16 7.133 init-timestamp:
#16 7.133
#16 7.133 init:
#16 7.133
#16 7.133 copy-resources:
#16 7.133 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.136 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.137
#16 7.137 compile:
#16 7.352 [resolver:resolve] Resolving artifacts
#16 7.377 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.586 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 8.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.687 [javac] import loci.common.ReflectedUniverse;
#16 8.687 [javac] ^
#16 8.987 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.987 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.987 [javac] ^
#16 8.987 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.987 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.987 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.088 [javac] int n = reader.getCoreMetadataList().size();
#16 9.088 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.088 [javac] reader.setCoreIndex(coreIndex);
#16 9.088 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.088 [javac] int n = reader.getCoreMetadataList().size();
#16 9.088 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.088 [javac] int n = reader.getCoreMetadataList().size();
#16 9.088 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.088 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 9.088 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.088 [javac] int n = reader.getCoreMetadataList().size();
#16 9.088 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.088 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 9.088 [javac] ^
#16 9.088 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.088 [javac] int n = reader.getCoreMetadataList().size();
#16 9.088 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.089 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.089 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.089 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.089 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.089 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.089 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.089 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.089 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 9.089 [javac] ^
#16 9.089 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.089 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 9.089 [javac] ^
#16 9.190 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.190 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 9.190 [javac] ^
#16 9.290 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.290 [javac] BitWriter out = new BitWriter();
#16 9.290 [javac] ^
#16 9.290 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.290 [javac] BitWriter out = new BitWriter();
#16 9.290 [javac] ^
#16 9.390 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.390 [javac] return new Double(v);
#16 9.390 [javac] ^
#16 9.991 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.991 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.991 [javac] ^
#16 9.991 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.991 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.991 [javac] ^
#16 9.991 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.991 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.991 [javac] ^
#16 10.19 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.19 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 10.19 [javac] ^
#16 10.39 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.39 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 10.39 [javac] ^
#16 10.39 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.39 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.39 [javac] ^
#16 10.49 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.49 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#16 10.49 [javac] ^
#16 10.49 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.49 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.49 [javac] ^
#16 10.49 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.49 [javac] protected ReflectedUniverse r;
#16 10.49 [javac] ^
#16 10.49 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.49 [javac] r = new ReflectedUniverse();
#16 10.49 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 10.59 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 10.59 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.60 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.70 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 10.70 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.70 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 10.70 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.70 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.70 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.70 [javac] ^
#16 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.70 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.70 [javac] ^
#16 10.80 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.80 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.80 [javac] 51 warnings
#16 10.85
#16 10.85 formats-bsd.jar:
#16 10.86 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.96 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 10.97 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 10.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 10.97 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 10.97 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.97
#16 10.97 deps-formats-gpl:
#16 10.97
#16 10.97 jar-formats-gpl:
#16 11.10 [echo] isSnapshot = true
#16 11.26
#16 11.26 init-title:
#16 11.26 [echo] ----------=========== formats-gpl ===========----------
#16 11.26
#16 11.26 init-timestamp:
#16 11.26
#16 11.26 init:
#16 11.26
#16 11.26 copy-resources:
#16 11.26 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.26 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.26
#16 11.26 compile:
#16 11.69 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.04 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.46 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.61 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.73 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.75 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.89 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.01 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.05 [resolver:resolve] Resolving artifacts
#16 13.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 13.24 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.24 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 13.60 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 13.60 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 13.62 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.93 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 15.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.03 [javac] import loci.formats.codec.BitWriter;
#16 15.03 [javac] ^
#16 15.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.13 [javac] import loci.formats.codec.BitWriter;
#16 15.13 [javac] ^
#16 16.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.93 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.93 [javac] ^
#16 16.93 [javac] cast to Object for a varargs call
#16 16.93 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 17.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.03 [javac] BitWriter bits = null;
#16 17.03 [javac] ^
#16 17.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.03 [javac] bits = new BitWriter(planes[index].length / 8);
#16 17.03 [javac] ^
#16 17.33 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.33 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 17.33 [javac] ^
#16 17.63 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 17.63 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 17.63 [javac] ^
#16 17.63 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 17.63 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 17.63 [javac] ^
#16 17.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.73 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.73 [javac] ^
#16 17.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.73 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.73 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.01 [javac] Variable variable = group.findVariable(variableName);
#16 18.01 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.01 [javac] Variable variable = group.findVariable(variableName);
#16 18.01 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 18.01 [javac] List<Attribute> attributes = variable.getAttributes();
#16 18.01 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.01 [javac] String groupName = group.getName();
#16 18.01 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 18.01 [javac] List<Attribute> attributes = group.getAttributes();
#16 18.01 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.01 [javac] String variableName = variable.getName();
#16 18.01 [javac] ^
#16 18.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 18.01 [javac] Group nextParent = parent.findGroup(token);
#16 18.01 [javac] ^
#16 18.01 [javac] Note: Some input files use unchecked or unsafe operations.
#16 18.01 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.01 [javac] 18 warnings
#16 18.01
#16 18.01 formats-gpl.jar:
#16 18.02 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 18.15 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 18.16 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 18.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 18.20 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 18.21 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 18.21
#16 18.21 deps-bio-formats-plugins:
#16 18.21
#16 18.21 jar-bio-formats-plugins:
#16 18.30 [echo] isSnapshot = true
#16 18.45
#16 18.45 init-title:
#16 18.45 [echo] ----------=========== bio-formats_plugins ===========----------
#16 18.45
#16 18.45 init-timestamp:
#16 18.45
#16 18.45 init:
#16 18.45
#16 18.45 copy-resources:
#16 18.45 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.45 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.45
#16 18.45 compile:
#16 18.70 [resolver:resolve] Resolving artifacts
#16 18.72 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.02 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.72 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.72 [javac] import loci.common.ReflectedUniverse;
#16 19.72 [javac] ^
#16 19.82 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.82 [javac] import loci.common.ReflectedUniverse;
#16 19.82 [javac] ^
#16 20.22 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 20.22 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 20.22 [javac] ^
#16 20.32 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.32 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 20.32 [javac] ^
#16 20.32 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.32 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 20.32 [javac] ^
#16 20.42 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.42 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.42 [javac] ^
#16 20.42 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.42 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.42 [javac] ^
#16 20.83 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.83 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.83 [javac] 8 warnings
#16 20.86
#16 20.86 bio-formats-plugins.jar:
#16 20.87 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.90 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 20.90 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 20.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 20.90 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 20.90 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.91
#16 20.91 deps-bio-formats-tools:
#16 20.91
#16 20.91 jar-bio-formats-tools:
#16 21.02 [echo] isSnapshot = true
#16 21.18
#16 21.18 init-title:
#16 21.18 [echo] ----------=========== bio-formats-tools ===========----------
#16 21.18
#16 21.18 init-timestamp:
#16 21.18
#16 21.18 init:
#16 21.18
#16 21.18 copy-resources:
#16 21.18 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.18
#16 21.18 compile:
#16 21.43 [resolver:resolve] Resolving artifacts
#16 21.44 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.75 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.72 [javac] 1 warning
#16 22.72
#16 22.72 bio-formats-tools.jar:
#16 22.72 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.73 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 22.73 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 22.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 22.79 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 22.80 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.80
#16 22.80 deps-tests:
#16 22.80
#16 22.80 jar-tests:
#16 22.89 [echo] isSnapshot = true
#16 23.04
#16 23.04 init-title:
#16 23.04 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 23.04
#16 23.04 init-timestamp:
#16 23.04
#16 23.04 init:
#16 23.04
#16 23.04 copy-resources:
#16 23.04 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.04
#16 23.04 compile:
#16 23.34 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.43 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.79 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.82 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.24 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.67 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.69 [resolver:resolve] Resolving artifacts
#16 24.70 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.76 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.12 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.13 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.54 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.90 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.90 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 26.21 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 27.11 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.11 [javac] int index = unflattenedReader.getCoreIndex();
#16 27.11 [javac] ^
#16 27.11 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 27.11 [javac] reader.setCoreIndex(index);
#16 27.11 [javac] ^
#16 27.31 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.31 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.31 [javac] ^
#16 27.31 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.31 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.31 [javac] ^
#16 27.61 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.61 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 27.61 [javac] ^
#16 27.61 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.61 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 27.61 [javac] ^
#16 27.61 [javac] Note: Some input files use unchecked or unsafe operations.
#16 27.61 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 27.61 [javac] 7 warnings
#16 27.68
#16 27.68 tests.jar:
#16 27.68 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 27.69 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 27.70 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 27.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 27.78 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.79 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.79
#16 27.79 jars:
#16 27.79
#16 27.79 copy-jars:
#16 27.79
#16 27.79 deps-formats-api:
#16 27.83 [echo] isSnapshot = true
#16 27.88
#16 27.88 install-pom:
#16 28.03 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 28.03 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.03 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 28.03
#16 28.03 jar-formats-api:
#16 28.13 [echo] isSnapshot = true
#16 28.32
#16 28.32 init-title:
#16 28.32 [echo] ----------=========== formats-api ===========----------
#16 28.32
#16 28.32 init-timestamp:
#16 28.32
#16 28.32 init:
#16 28.32
#16 28.32 copy-resources:
#16 28.32
#16 28.32 compile:
#16 28.45 [resolver:resolve] Resolving artifacts
#16 28.46
#16 28.46 formats-api.jar:
#16 28.48 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 28.48 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.48 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 28.48
#16 28.48 deps-turbojpeg:
#16 28.48
#16 28.48 jar-turbojpeg:
#16 28.57 [echo] isSnapshot = true
#16 28.71
#16 28.71 init-title:
#16 28.71 [echo] ----------=========== turbojpeg ===========----------
#16 28.71
#16 28.71 init-timestamp:
#16 28.71
#16 28.71 init:
#16 28.71
#16 28.71 copy-resources:
#16 28.71
#16 28.71 compile:
#16 28.72 [resolver:resolve] Resolving artifacts
#16 28.72
#16 28.72 jar:
#16 28.73 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 28.73 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 28.73 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 28.73 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.74 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 28.74
#16 28.74 deps-formats-bsd:
#16 28.74
#16 28.74 jar-formats-bsd:
#16 28.82 [echo] isSnapshot = true
#16 28.96
#16 28.96 init-title:
#16 28.96 [echo] ----------=========== formats-bsd ===========----------
#16 28.96
#16 28.96 init-timestamp:
#16 28.96
#16 28.96 init:
#16 28.96
#16 28.96 copy-resources:
#16 28.97
#16 28.97 compile:
#16 29.15 [resolver:resolve] Resolving artifacts
#16 29.17
#16 29.17 formats-bsd.jar:
#16 29.20 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 29.20 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 29.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 29.20 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.21 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 29.21
#16 29.21 deps-formats-gpl:
#16 29.21
#16 29.21 jar-formats-gpl:
#16 29.29 [echo] isSnapshot = true
#16 29.43
#16 29.43 init-title:
#16 29.43 [echo] ----------=========== formats-gpl ===========----------
#16 29.43
#16 29.43 init-timestamp:
#16 29.43
#16 29.43 init:
#16 29.43
#16 29.43 copy-resources:
#16 29.43
#16 29.43 compile:
#16 29.65 [resolver:resolve] Resolving artifacts
#16 29.67
#16 29.67 formats-gpl.jar:
#16 29.70 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 29.71 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 29.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 29.71 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.71 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 29.71
#16 29.71 deps-bio-formats-plugins:
#16 29.71
#16 29.71 jar-bio-formats-plugins:
#16 29.79 [echo] isSnapshot = true
#16 29.93
#16 29.93 init-title:
#16 29.93 [echo] ----------=========== bio-formats_plugins ===========----------
#16 29.93
#16 29.93 init-timestamp:
#16 29.93
#16 29.93 init:
#16 29.93
#16 29.93 copy-resources:
#16 29.94
#16 29.94 compile:
#16 30.17 [resolver:resolve] Resolving artifacts
#16 30.18
#16 30.18 bio-formats-plugins.jar:
#16 30.19 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 30.20 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 30.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 30.20 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.20 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 30.21
#16 30.21 deps-bio-formats-tools:
#16 30.21
#16 30.21 jar-bio-formats-tools:
#16 30.32 [echo] isSnapshot = true
#16 30.46
#16 30.46 init-title:
#16 30.46 [echo] ----------=========== bio-formats-tools ===========----------
#16 30.46
#16 30.46 init-timestamp:
#16 30.46
#16 30.46 init:
#16 30.46
#16 30.46 copy-resources:
#16 30.46
#16 30.46 compile:
#16 30.70 [resolver:resolve] Resolving artifacts
#16 30.71
#16 30.71 bio-formats-tools.jar:
#16 30.71 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 30.72 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 30.72 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 30.72 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.72 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 30.72
#16 30.72 deps-tests:
#16 30.72
#16 30.72 jar-tests:
#16 30.80 [echo] isSnapshot = true
#16 30.95
#16 30.95 init-title:
#16 30.95 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 30.95
#16 30.95 init-timestamp:
#16 30.95
#16 30.95 init:
#16 30.95
#16 30.95 copy-resources:
#16 30.95
#16 30.95 compile:
#16 31.18 [resolver:resolve] Resolving artifacts
#16 31.19
#16 31.19 tests.jar:
#16 31.20 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 31.20 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 31.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 31.21 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 31.21 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 31.21
#16 31.21 jars:
#16 31.21
#16 31.21 tools:
#16 31.21 [echo] ----------=========== bioformats_package ===========----------
#16 31.29 [echo] isSnapshot = true
#16 31.44
#16 31.44 init-timestamp:
#16 31.44
#16 31.44 bundle:
#16 31.70 [resolver:resolve] Resolving artifacts
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.75 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.78 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.78 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.83 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.89 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.90 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.18 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.19 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.24 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.25 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.41 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.84 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.91 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.98 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.03 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.04 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.05 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.18 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.28 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.28 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.37 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.39 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.80 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.82 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.85 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.94 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.95 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.97 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.98 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.18 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.24 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.29 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.38 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.50 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.51 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.92 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.93 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.03 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.08 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.09 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.10 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.15 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.17 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.51 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.53 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.53 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.54 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.55 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.57 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.91 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.00 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.39 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 43.08 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.69 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 43.69 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 43.72 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 43.79 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 43.79 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 43.79
#16 43.79 BUILD SUCCESSFUL
#16 43.79 Total time: 43 seconds
#16 DONE 44.6s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.0s done
#18 writing image sha256:9aa6c724fbde6e7105d27038c1f03623ce0ebd58eafc46be9aa9c720c8d1c3e0 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.0s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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