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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.jar (212 kB at 3.1 MB/s)
#14 431.1 Progress (4): 1.0/3.2 MB | 262/475 kB | 33 kB | 15 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.jar
#14 431.1 Progress (4): 1.0/3.2 MB | 262/475 kB | 33 kB | 15 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.jar (33 kB at 393 kB/s)
#14 431.1 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.jar
#14 431.1 Progress (3): 1.4/3.2 MB | 279/475 kB | 15 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.jar (15 kB at 158 kB/s)
#14 431.2 Progress (2): 1.7/3.2 MB | 279/475 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.jar
#14 431.2 Progress (2): 1.7/3.2 MB | 279/475 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.jar (345 kB at 2.5 MB/s)
#14 431.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.jar
#14 431.2 Progress (4): 2.9/3.2 MB | 311/475 kB | 44 kB | 37 kB
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#14 431.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.jar
#14 431.2 Progress (3): 3.0/3.2 MB | 311/475 kB | 37 kB
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#14 431.2 Progress (2): 3.1/3.2 MB | 311/475 kB
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#14 431.2 Progress (2): 3.1/3.2 MB | 311/475 kB
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#14 431.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.promise/1.2.0/org.osgi.util.promise-1.2.0.jar
#14 431.2 Progress (4): 332/475 kB | 25 kB | 24 kB | 17 kB
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#14 431.3 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/6.3.1/biz.aQute.bnd.util-6.3.1.jar
#14 431.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.2.0/org.osgi.util.function-1.2.0.jar (24 kB at 113 kB/s)
#14 431.3 Progress (3): 344/475 kB | 17 kB | 4.1/83 kB
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#14 431.3 Progress (3): 344/475 kB | 17 kB | 7.7/83 kB
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#14 431.3 Progress (2): 344/475 kB | 41/83 kB
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#14 431.3 Progress (2): 348/475 kB | 41/83 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.promise/1.2.0/org.osgi.util.promise-1.2.0.jar (83 kB at 336 kB/s)
#14 431.3 Progress (4): 377/475 kB | 188/424 kB | 41 kB | 147/168 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/easymock/easymock/2.4/easymock-2.4.jar
#14 431.3 Progress (4): 377/475 kB | 197/424 kB | 41 kB | 151/168 kB
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#14 431.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.utils/1.6.0/org.apache.felix.utils-1.6.0.jar
#14 431.3 Progress (3): 381/475 kB | 424 kB | 168 kB
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#14 431.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.compendium/4.2.0/org.osgi.compendium-4.2.0.jar
#14 431.3 Progress (3): 475 kB | 424 kB | 4.1/81 kB
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#14 431.3 [output clipped, log limit 2MiB reached]
#14 576.0 SLF4J: No SLF4J providers were found.
#14 576.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 576.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 584.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.768 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.214 [echo] isSnapshot = true
#16 3.315
#16 3.315 copy-jars:
#16 3.315
#16 3.315 deps-formats-api:
#16 3.398 [echo] isSnapshot = true
#16 3.452
#16 3.452 install-pom:
#16 3.621 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 3.751 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.754 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.756
#16 3.756 jar-formats-api:
#16 3.859 [echo] isSnapshot = true
#16 4.015
#16 4.015 init-title:
#16 4.015 [echo] ----------=========== formats-api ===========----------
#16 4.015
#16 4.015 init-timestamp:
#16 4.022
#16 4.022 init:
#16 4.022
#16 4.022 copy-resources:
#16 4.023 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.035 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.038
#16 4.038 compile:
#16 4.218 [resolver:resolve] Resolving artifacts
#16 4.243 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.470 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.070 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.071 [javac] import loci.common.ReflectedUniverse;
#16 5.071 [javac] ^
#16 5.371 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.371 [javac] int currentIndex = r.getCoreIndex();
#16 5.371 [javac] ^
#16 5.371 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.371 [javac] r.setCoreIndex(coreIndex);
#16 5.371 [javac] ^
#16 5.371 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.371 [javac] r.setCoreIndex(currentIndex);
#16 5.371 [javac] ^
#16 5.472 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.472 [javac] public void setCoreIndex(int no) {
#16 5.472 [javac] ^
#16 5.472 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.472 [javac] public int getCoreIndex() {
#16 5.472 [javac] ^
#16 5.472 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.472 [javac] public int coreIndexToSeries(int index)
#16 5.472 [javac] ^
#16 5.472 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.472 [javac] public int seriesToCoreIndex(int series)
#16 5.472 [javac] ^
#16 5.472 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.472 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.472 [javac] ^
#16 5.573 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.573 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.573 [javac] ^
#16 5.573 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.573 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.573 [javac] ^
#16 5.573 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.573 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.574 [javac] ^
#16 5.574 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.574 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.574 [javac] ^
#16 5.674 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.674 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.674 [javac] ^
#16 5.674 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.675 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.675 [javac] ^
#16 5.776 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.776 [javac] public void setCoreIndex(int no) {
#16 5.776 [javac] ^
#16 5.776 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.776 [javac] public int getCoreIndex() {
#16 5.776 [javac] ^
#16 5.776 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.776 [javac] public int coreIndexToSeries(int index) {
#16 5.776 [javac] ^
#16 5.776 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.776 [javac] public int seriesToCoreIndex(int series) {
#16 5.776 [javac] ^
#16 5.777 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.777 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.777 [javac] ^
#16 5.777 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.777 [javac] return getReader().getCoreMetadataList();
#16 5.777 [javac] ^
#16 5.777 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.777 [javac] return getReader().getCoreIndex();
#16 5.777 [javac] ^
#16 5.777 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.777 [javac] getReader().setCoreIndex(no);
#16 5.777 [javac] ^
#16 5.777 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.778 [javac] return getReader().seriesToCoreIndex(series);
#16 5.778 [javac] ^
#16 5.778 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.778 [javac] return getReader().coreIndexToSeries(index);
#16 5.778 [javac] ^
#16 5.878 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.878 [javac] public void setCoreIndex(int no) {
#16 5.878 [javac] ^
#16 5.878 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.878 [javac] public int getCoreIndex() {
#16 5.879 [javac] ^
#16 5.879 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.879 [javac] public int coreIndexToSeries(int index) {
#16 5.879 [javac] ^
#16 5.879 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.879 [javac] public int seriesToCoreIndex(int series) {
#16 5.879 [javac] ^
#16 5.879 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.879 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.879 [javac] ^
#16 5.879 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.879 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.879 [javac] ^
#16 5.879 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.879 [javac] return reader.getCoreIndex();
#16 5.879 [javac] ^
#16 5.879 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.879 [javac] reader.setCoreIndex(no);
#16 5.880 [javac] ^
#16 5.880 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.880 [javac] return reader.seriesToCoreIndex(series);
#16 5.880 [javac] ^
#16 5.880 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.880 [javac] return reader.coreIndexToSeries(index);
#16 5.880 [javac] ^
#16 6.049 [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.049 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.049 [javac] 36 warnings
#16 6.050
#16 6.050 formats-api.jar:
#16 6.050 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.083 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.130 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 6.136 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 6.214 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 6.216 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 6.218 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.219
#16 6.219 deps-turbojpeg:
#16 6.219
#16 6.219 jar-turbojpeg:
#16 6.334 [echo] isSnapshot = true
#16 6.478
#16 6.478 init-title:
#16 6.478 [echo] ----------=========== turbojpeg ===========----------
#16 6.478
#16 6.478 init-timestamp:
#16 6.479
#16 6.479 init:
#16 6.479
#16 6.479 copy-resources:
#16 6.479 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.480
#16 6.480 compile:
#16 6.490 [resolver:resolve] Resolving artifacts
#16 6.493 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.695 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.396 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.396 [javac] protected void finalize() throws Throwable {
#16 7.396 [javac] ^
#16 7.396 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.396 [javac] super.finalize();
#16 7.396 [javac] ^
#16 7.457 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.457 [javac] protected void finalize() throws Throwable {
#16 7.457 [javac] ^
#16 7.457 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.457 [javac] super.finalize();
#16 7.457 [javac] ^
#16 7.457 [javac] 5 warnings
#16 7.458
#16 7.458 jar:
#16 7.462 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.645 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 7.652 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 7.653 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 7.656 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 7.659 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.660
#16 7.660 deps-formats-bsd:
#16 7.660
#16 7.660 jar-formats-bsd:
#16 7.770 [echo] isSnapshot = true
#16 7.916
#16 7.916 init-title:
#16 7.916 [echo] ----------=========== formats-bsd ===========----------
#16 7.916
#16 7.916 init-timestamp:
#16 7.916
#16 7.916 init:
#16 7.916
#16 7.916 copy-resources:
#16 7.917 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.919 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.920
#16 7.920 compile:
#16 8.128 [resolver:resolve] Resolving artifacts
#16 8.153 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.361 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.462 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.462 [javac] import loci.common.ReflectedUniverse;
#16 9.462 [javac] ^
#16 9.862 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.863 [javac] core.size() != reader.getCoreMetadataList().size())
#16 9.863 [javac] ^
#16 9.863 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.863 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 9.863 [javac] ^
#16 9.863 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.863 [javac] int n = reader.getCoreMetadataList().size();
#16 9.863 [javac] ^
#16 9.863 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.863 [javac] reader.setCoreIndex(coreIndex);
#16 9.863 [javac] ^
#16 9.863 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.863 [javac] int n = reader.getCoreMetadataList().size();
#16 9.863 [javac] ^
#16 9.863 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.863 [javac] int n = reader.getCoreMetadataList().size();
#16 9.863 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.864 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.864 [javac] int n = reader.getCoreMetadataList().size();
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.864 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.864 [javac] int n = reader.getCoreMetadataList().size();
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.864 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.864 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.864 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.864 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.864 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.864 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 9.864 [javac] ^
#16 9.865 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.865 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 9.865 [javac] ^
#16 9.865 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.865 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 9.865 [javac] ^
#16 9.865 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.865 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 9.865 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.07 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.07 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.17 [javac] BitWriter out = new BitWriter();
#16 10.17 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.17 [javac] BitWriter out = new BitWriter();
#16 10.17 [javac] ^
#16 10.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.27 [javac] return new Double(v);
#16 10.27 [javac] ^
#16 10.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.97 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 10.97 [javac] ^
#16 10.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.97 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 10.97 [javac] ^
#16 10.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.97 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 10.97 [javac] ^
#16 11.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.07 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 11.07 [javac] ^
#16 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.27 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.27 [javac] ^
#16 11.37 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.37 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 11.37 [javac] ^
#16 11.37 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.37 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#16 11.37 [javac] ^
#16 11.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.47 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.47 [javac] ^
#16 11.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.47 [javac] protected ReflectedUniverse r;
#16 11.47 [javac] ^
#16 11.47 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.47 [javac] r = new ReflectedUniverse();
#16 11.47 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 11.57 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#16 11.57 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.57 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 11.57 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.57 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.57 [javac] ^
#16 11.57 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 11.57 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.57 [javac] ^
#16 11.67 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 11.67 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 11.67 [javac] ^
#16 11.67 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.67 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 11.67 [javac] ^
#16 11.67 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.67 [javac] result[i] = new Double(readNumber().doubleValue());
#16 11.67 [javac] ^
#16 11.77 [javac] Note: Some input files use unchecked or unsafe operations.
#16 11.77 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 11.77 [javac] 51 warnings
#16 11.79
#16 11.79 formats-bsd.jar:
#16 11.79 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 11.90 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 11.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 11.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 11.91 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 11.91 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 11.91
#16 11.91 deps-formats-gpl:
#16 11.91
#16 11.91 jar-formats-gpl:
#16 12.00 [echo] isSnapshot = true
#16 12.14
#16 12.14 init-title:
#16 12.14 [echo] ----------=========== formats-gpl ===========----------
#16 12.14
#16 12.14 init-timestamp:
#16 12.14
#16 12.14 init:
#16 12.14
#16 12.14 copy-resources:
#16 12.14 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.14 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.14
#16 12.14 compile:
#16 12.50 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.92 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 13.29 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.30 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.47 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.60 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.61 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.80 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.92 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.96 [resolver:resolve] Resolving artifacts
#16 13.97 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.97 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 14.21 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 14.21 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 14.57 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 14.57 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 14.58 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 14.79 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 15.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.99 [javac] import loci.formats.codec.BitWriter;
#16 15.99 [javac] ^
#16 16.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.09 [javac] import loci.formats.codec.BitWriter;
#16 16.09 [javac] ^
#16 18.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 18.19 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 18.19 [javac] ^
#16 18.19 [javac] cast to Object for a varargs call
#16 18.19 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 18.29 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.29 [javac] BitWriter bits = null;
#16 18.29 [javac] ^
#16 18.29 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.29 [javac] bits = new BitWriter(planes[index].length / 8);
#16 18.29 [javac] ^
#16 18.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 18.59 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 18.59 [javac] ^
#16 19.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 19.09 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 19.09 [javac] ^
#16 19.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 19.09 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 19.09 [javac] ^
#16 19.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 19.09 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 19.09 [javac] ^
#16 19.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 19.09 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 19.09 [javac] ^
#16 19.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 19.40 [javac] Variable variable = group.findVariable(variableName);
#16 19.40 [javac] ^
#16 19.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 19.40 [javac] Variable variable = group.findVariable(variableName);
#16 19.40 [javac] ^
#16 19.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 19.40 [javac] List<Attribute> attributes = variable.getAttributes();
#16 19.40 [javac] ^
#16 19.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 19.40 [javac] String groupName = group.getName();
#16 19.40 [javac] ^
#16 19.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 19.40 [javac] List<Attribute> attributes = group.getAttributes();
#16 19.40 [javac] ^
#16 19.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 19.40 [javac] String variableName = variable.getName();
#16 19.40 [javac] ^
#16 19.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 19.40 [javac] Group nextParent = parent.findGroup(token);
#16 19.40 [javac] ^
#16 19.40 [javac] Note: Some input files use unchecked or unsafe operations.
#16 19.40 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.40 [javac] 18 warnings
#16 19.41
#16 19.41 formats-gpl.jar:
#16 19.42 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 19.55 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 19.55 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 19.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 19.62 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 19.62 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 19.62
#16 19.62 deps-bio-formats-plugins:
#16 19.62
#16 19.62 jar-bio-formats-plugins:
#16 19.71 [echo] isSnapshot = true
#16 19.83
#16 19.83 init-title:
#16 19.83 [echo] ----------=========== bio-formats_plugins ===========----------
#16 19.83
#16 19.83 init-timestamp:
#16 19.83
#16 19.83 init:
#16 19.83
#16 19.83 copy-resources:
#16 19.83 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.84 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.84
#16 19.84 compile:
#16 20.08 [resolver:resolve] Resolving artifacts
#16 20.10 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 20.31 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 21.11 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.11 [javac] import loci.common.ReflectedUniverse;
#16 21.11 [javac] ^
#16 21.11 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.11 [javac] import loci.common.ReflectedUniverse;
#16 21.11 [javac] ^
#16 21.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 21.61 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 21.61 [javac] ^
#16 21.81 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.81 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 21.81 [javac] ^
#16 21.81 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.81 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 21.81 [javac] ^
#16 21.91 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.91 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 21.91 [javac] ^
#16 21.91 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 21.91 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 21.91 [javac] ^
#16 22.28 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 22.28 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.28 [javac] 8 warnings
#16 22.28
#16 22.28 bio-formats-plugins.jar:
#16 22.28 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 22.31 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 22.32 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 22.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 22.32 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 22.32 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 22.32
#16 22.32 deps-bio-formats-tools:
#16 22.32
#16 22.32 jar-bio-formats-tools:
#16 22.42 [echo] isSnapshot = true
#16 22.55
#16 22.55 init-title:
#16 22.55 [echo] ----------=========== bio-formats-tools ===========----------
#16 22.55
#16 22.55 init-timestamp:
#16 22.55
#16 22.55 init:
#16 22.55
#16 22.55 copy-resources:
#16 22.55 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 22.55
#16 22.55 compile:
#16 22.77 [resolver:resolve] Resolving artifacts
#16 22.78 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 22.99 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.99 [javac] 1 warning
#16 24.01
#16 24.01 bio-formats-tools.jar:
#16 24.02 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 24.02 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 24.03 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 24.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 24.03 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 24.03 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 24.03
#16 24.03 deps-tests:
#16 24.03
#16 24.03 jar-tests:
#16 24.11 [echo] isSnapshot = true
#16 24.24
#16 24.24 init-title:
#16 24.24 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 24.24
#16 24.24 init-timestamp:
#16 24.24
#16 24.24 init:
#16 24.24
#16 24.24 copy-resources:
#16 24.24 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.24
#16 24.24 compile:
#16 24.52 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.61 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.97 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.99 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 25.42 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 25.85 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 25.91 [resolver:resolve] Resolving artifacts
#16 25.92 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.98 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 26.33 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 26.34 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 26.75 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 27.12 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 27.13 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 27.33 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 28.33 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 28.33 [javac] int index = unflattenedReader.getCoreIndex();
#16 28.33 [javac] ^
#16 28.33 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 28.33 [javac] reader.setCoreIndex(index);
#16 28.33 [javac] ^
#16 28.53 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 28.53 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 28.53 [javac] ^
#16 28.53 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 28.53 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 28.53 [javac] ^
#16 28.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 28.83 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 28.83 [javac] ^
#16 28.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 28.83 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 28.83 [javac] ^
#16 28.83 [javac] Note: Some input files use unchecked or unsafe operations.
#16 28.83 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 28.83 [javac] 7 warnings
#16 28.86
#16 28.86 tests.jar:
#16 28.86 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 28.87 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 28.88 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 28.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 28.88 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.88 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.88
#16 28.88 jars:
#16 28.88
#16 28.88 copy-jars:
#16 28.88
#16 28.88 deps-formats-api:
#16 28.93 [echo] isSnapshot = true
#16 28.96
#16 28.96 install-pom:
#16 29.09 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 29.12 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.13 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 29.13
#16 29.13 jar-formats-api:
#16 29.20 [echo] isSnapshot = true
#16 29.33
#16 29.33 init-title:
#16 29.33 [echo] ----------=========== formats-api ===========----------
#16 29.33
#16 29.33 init-timestamp:
#16 29.33
#16 29.33 init:
#16 29.33
#16 29.33 copy-resources:
#16 29.33
#16 29.33 compile:
#16 29.46 [resolver:resolve] Resolving artifacts
#16 29.46
#16 29.46 formats-api.jar:
#16 29.48 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 29.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 29.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 29.48 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.49 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 29.49
#16 29.49 deps-turbojpeg:
#16 29.49
#16 29.49 jar-turbojpeg:
#16 29.56 [echo] isSnapshot = true
#16 29.68
#16 29.68 init-title:
#16 29.68 [echo] ----------=========== turbojpeg ===========----------
#16 29.68
#16 29.68 init-timestamp:
#16 29.68
#16 29.68 init:
#16 29.68
#16 29.68 copy-resources:
#16 29.68
#16 29.68 compile:
#16 29.69 [resolver:resolve] Resolving artifacts
#16 29.69
#16 29.69 jar:
#16 29.70 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 29.70 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 29.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 29.71 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.71 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 29.71
#16 29.71 deps-formats-bsd:
#16 29.71
#16 29.71 jar-formats-bsd:
#16 29.79 [echo] isSnapshot = true
#16 29.91
#16 29.91 init-title:
#16 29.91 [echo] ----------=========== formats-bsd ===========----------
#16 29.91
#16 29.91 init-timestamp:
#16 29.91
#16 29.91 init:
#16 29.91
#16 29.91 copy-resources:
#16 29.92
#16 29.92 compile:
#16 30.12 [resolver:resolve] Resolving artifacts
#16 30.14
#16 30.14 formats-bsd.jar:
#16 30.17 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 30.17 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 30.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 30.17 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.17 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 30.18
#16 30.18 deps-formats-gpl:
#16 30.18
#16 30.18 jar-formats-gpl:
#16 30.25 [echo] isSnapshot = true
#16 30.37
#16 30.37 init-title:
#16 30.37 [echo] ----------=========== formats-gpl ===========----------
#16 30.37
#16 30.37 init-timestamp:
#16 30.37
#16 30.37 init:
#16 30.37
#16 30.37 copy-resources:
#16 30.37
#16 30.37 compile:
#16 30.59 [resolver:resolve] Resolving artifacts
#16 30.61
#16 30.61 formats-gpl.jar:
#16 30.64 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 30.65 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 30.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 30.65 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.65 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 30.65
#16 30.65 deps-bio-formats-plugins:
#16 30.65
#16 30.65 jar-bio-formats-plugins:
#16 30.73 [echo] isSnapshot = true
#16 30.85
#16 30.85 init-title:
#16 30.85 [echo] ----------=========== bio-formats_plugins ===========----------
#16 30.85
#16 30.85 init-timestamp:
#16 30.85
#16 30.85 init:
#16 30.85
#16 30.85 copy-resources:
#16 30.85
#16 30.85 compile:
#16 31.08 [resolver:resolve] Resolving artifacts
#16 31.09
#16 31.09 bio-formats-plugins.jar:
#16 31.10 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 31.11 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 31.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 31.11 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 31.11 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 31.11
#16 31.11 deps-bio-formats-tools:
#16 31.11
#16 31.11 jar-bio-formats-tools:
#16 31.19 [echo] isSnapshot = true
#16 31.32
#16 31.32 init-title:
#16 31.32 [echo] ----------=========== bio-formats-tools ===========----------
#16 31.32
#16 31.32 init-timestamp:
#16 31.32
#16 31.32 init:
#16 31.32
#16 31.32 copy-resources:
#16 31.32
#16 31.32 compile:
#16 31.54 [resolver:resolve] Resolving artifacts
#16 31.55
#16 31.55 bio-formats-tools.jar:
#16 31.55 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 31.56 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 31.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 31.56 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 31.56 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 31.56
#16 31.56 deps-tests:
#16 31.56
#16 31.56 jar-tests:
#16 31.66 [echo] isSnapshot = true
#16 31.79
#16 31.79 init-title:
#16 31.79 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 31.79
#16 31.79 init-timestamp:
#16 31.79
#16 31.79 init:
#16 31.79
#16 31.79 copy-resources:
#16 31.79
#16 31.79 compile:
#16 32.02 [resolver:resolve] Resolving artifacts
#16 32.03
#16 32.03 tests.jar:
#16 32.03 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 32.03 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 32.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 32.04 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 32.04 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 32.04
#16 32.04 jars:
#16 32.04
#16 32.04 tools:
#16 32.04 [echo] ----------=========== bioformats_package ===========----------
#16 32.12 [echo] isSnapshot = true
#16 32.30
#16 32.30 init-timestamp:
#16 32.30
#16 32.30 bundle:
#16 32.52 [resolver:resolve] Resolving artifacts
#16 32.53 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.56 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.58 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.61 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.67 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.72 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.73 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.93 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.00 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.01 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.06 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.07 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.23 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.66 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.66 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.66 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.67 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.76 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.76 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.82 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.87 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.88 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.89 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.01 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.08 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.11 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.12 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.22 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.23 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.63 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.65 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.68 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.78 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.80 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.81 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.82 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.02 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.08 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.15 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.25 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.25 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.36 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.37 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.78 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.79 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.89 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.94 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.99 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.00 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.05 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.08 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.41 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.43 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.43 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.44 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.45 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.47 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.81 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.91 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 37.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 43.75 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.40 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 44.42 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 44.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 44.47 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 44.47 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 44.47
#16 44.47 BUILD SUCCESSFUL
#16 44.47 Total time: 43 seconds
#16 DONE 44.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.9s done
#18 writing image sha256:35c125bb750c6240c133a29047d60a5aa7f436aafa197d5acfa765a7d8bceed8 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.9s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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