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#14 429.1 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
#14 429.4 [[1;33mWARNING[m] The following patterns were never triggered in this artifact exclusion filter:
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#14 429.4 o 'com.beust:jcommander'
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#14 429.6 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
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#14 430.5 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/6.3.1/biz.aQute.bnd.util-6.3.1.pom
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#14 430.6 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.pom
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#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/1.6.6/org.apache.felix.bundlerepository-1.6.6.pom
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#14 430.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/2.1/felix-parent-2.1.pom
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#14 430.9 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.1.0/org.osgi.core-4.1.0.pom
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#14 438.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.jar
#14 438.6 Progress (3): 475 kB | 1.3/3.2 MB | 33 kB
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#14 438.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.jar
#14 438.6 Progress (2): 475 kB | 1.4/3.2 MB
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#14 438.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.jar
#14 438.6 Progress (1): 1.4/3.2 MB
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#14 438.6 [output clipped, log limit 2MiB reached]
#14 581.0 SLF4J: No SLF4J providers were found.
#14 581.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 581.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 581.3 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#14 581.3 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#14 581.3 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#14 581.3 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#14 DONE 591.0s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.588 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.981 [echo] isSnapshot = true
#16 1.131
#16 1.131 copy-jars:
#16 1.131
#16 1.131 deps-formats-api:
#16 1.220 [echo] isSnapshot = true
#16 1.277
#16 1.277 install-pom:
#16 1.467 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 1.476 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 1.481 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.482
#16 1.482 jar-formats-api:
#16 1.604 [echo] isSnapshot = true
#16 1.764
#16 1.764 init-title:
#16 1.765 [echo] ----------=========== formats-api ===========----------
#16 1.765
#16 1.765 init-timestamp:
#16 1.772
#16 1.772 init:
#16 1.772
#16 1.772 copy-resources:
#16 1.773 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.785 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.787
#16 1.787 compile:
#16 1.970 [resolver:resolve] Resolving artifacts
#16 1.997 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.223 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 2.223 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 2.223 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 2.223 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 2.824 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.824 [javac] import loci.common.ReflectedUniverse;
#16 2.824 [javac] ^
#16 3.124 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.124 [javac] int currentIndex = r.getCoreIndex();
#16 3.124 [javac] ^
#16 3.124 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.124 [javac] r.setCoreIndex(coreIndex);
#16 3.124 [javac] ^
#16 3.124 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.124 [javac] r.setCoreIndex(currentIndex);
#16 3.124 [javac] ^
#16 3.225 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.225 [javac] public void setCoreIndex(int no) {
#16 3.225 [javac] ^
#16 3.225 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.225 [javac] public int getCoreIndex() {
#16 3.225 [javac] ^
#16 3.225 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.225 [javac] public int coreIndexToSeries(int index)
#16 3.225 [javac] ^
#16 3.225 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.225 [javac] public int seriesToCoreIndex(int series)
#16 3.225 [javac] ^
#16 3.225 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.225 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.225 [javac] ^
#16 3.326 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.326 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.326 [javac] ^
#16 3.326 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.326 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.326 [javac] ^
#16 3.326 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.326 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.326 [javac] ^
#16 3.326 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.326 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.326 [javac] ^
#16 3.427 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#16 3.427 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#16 3.427 [javac] ^
#16 3.427 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.427 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.427 [javac] ^
#16 3.427 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.427 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.427 [javac] ^
#16 3.527 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.527 [javac] public void setCoreIndex(int no) {
#16 3.528 [javac] ^
#16 3.528 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.528 [javac] public int getCoreIndex() {
#16 3.528 [javac] ^
#16 3.528 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.528 [javac] public int coreIndexToSeries(int index) {
#16 3.528 [javac] ^
#16 3.528 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.528 [javac] public int seriesToCoreIndex(int series) {
#16 3.528 [javac] ^
#16 3.528 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.528 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.528 [javac] ^
#16 3.528 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.528 [javac] return getReader().getCoreMetadataList();
#16 3.528 [javac] ^
#16 3.528 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.528 [javac] return getReader().getCoreIndex();
#16 3.528 [javac] ^
#16 3.529 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.529 [javac] getReader().setCoreIndex(no);
#16 3.529 [javac] ^
#16 3.529 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.529 [javac] return getReader().seriesToCoreIndex(series);
#16 3.529 [javac] ^
#16 3.529 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.529 [javac] return getReader().coreIndexToSeries(index);
#16 3.529 [javac] ^
#16 3.629 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.629 [javac] public void setCoreIndex(int no) {
#16 3.629 [javac] ^
#16 3.629 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.629 [javac] public int getCoreIndex() {
#16 3.629 [javac] ^
#16 3.629 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.630 [javac] public int coreIndexToSeries(int index) {
#16 3.630 [javac] ^
#16 3.630 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.630 [javac] public int seriesToCoreIndex(int series) {
#16 3.630 [javac] ^
#16 3.630 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.630 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.630 [javac] ^
#16 3.630 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.630 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.630 [javac] ^
#16 3.630 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.630 [javac] return reader.getCoreIndex();
#16 3.630 [javac] ^
#16 3.630 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.630 [javac] reader.setCoreIndex(no);
#16 3.630 [javac] ^
#16 3.630 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.630 [javac] return reader.seriesToCoreIndex(series);
#16 3.630 [javac] ^
#16 3.630 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.630 [javac] return reader.coreIndexToSeries(index);
#16 3.630 [javac] ^
#16 3.812 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.812 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.812 [javac] 40 warnings
#16 3.813
#16 3.813 formats-api.jar:
#16 3.813 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.838 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.872 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 3.875 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 3.878 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 3.879 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.881 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.882
#16 3.882 deps-turbojpeg:
#16 3.882
#16 3.882 jar-turbojpeg:
#16 3.981 [echo] isSnapshot = true
#16 4.133
#16 4.133 init-title:
#16 4.133 [echo] ----------=========== turbojpeg ===========----------
#16 4.133
#16 4.133 init-timestamp:
#16 4.133
#16 4.133 init:
#16 4.133
#16 4.133 copy-resources:
#16 4.134 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.134
#16 4.134 compile:
#16 4.145 [resolver:resolve] Resolving artifacts
#16 4.148 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.351 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.351 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 4.351 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 4.351 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 5.052 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.052 [javac] protected void finalize() throws Throwable {
#16 5.052 [javac] ^
#16 5.052 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.052 [javac] super.finalize();
#16 5.052 [javac] ^
#16 5.052 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.052 [javac] protected void finalize() throws Throwable {
#16 5.052 [javac] ^
#16 5.052 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.052 [javac] super.finalize();
#16 5.052 [javac] ^
#16 5.052 [javac] 8 warnings
#16 5.058
#16 5.058 jar:
#16 5.062 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.248 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 5.255 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 5.258 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 5.260 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 5.263 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.264
#16 5.264 deps-formats-bsd:
#16 5.264
#16 5.264 jar-formats-bsd:
#16 5.399 [echo] isSnapshot = true
#16 5.537
#16 5.537 init-title:
#16 5.537 [echo] ----------=========== formats-bsd ===========----------
#16 5.537
#16 5.537 init-timestamp:
#16 5.537
#16 5.537 init:
#16 5.537
#16 5.537 copy-resources:
#16 5.538 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.540 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.541
#16 5.541 compile:
#16 5.759 [resolver:resolve] Resolving artifacts
#16 5.786 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.994 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.994 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 5.994 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 5.994 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 7.196 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.196 [javac] import loci.common.ReflectedUniverse;
#16 7.196 [javac] ^
#16 7.696 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.696 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.696 [javac] ^
#16 7.696 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.696 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.696 [javac] ^
#16 7.696 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.696 [javac] int n = reader.getCoreMetadataList().size();
#16 7.696 [javac] ^
#16 7.696 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.696 [javac] reader.setCoreIndex(coreIndex);
#16 7.696 [javac] ^
#16 7.696 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.697 [javac] int n = reader.getCoreMetadataList().size();
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.697 [javac] int n = reader.getCoreMetadataList().size();
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.697 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.697 [javac] int n = reader.getCoreMetadataList().size();
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.697 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.697 [javac] int n = reader.getCoreMetadataList().size();
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.697 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.697 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.697 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.697 [javac] ^
#16 7.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.697 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.698 [javac] ^
#16 7.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.698 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.698 [javac] ^
#16 7.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.698 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.698 [javac] ^
#16 7.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.698 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.698 [javac] ^
#16 7.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.698 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.698 [javac] ^
#16 7.798 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.798 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.798 [javac] ^
#16 7.899 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.899 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.899 [javac] ^
#16 7.899 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#16 7.899 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#16 7.899 [javac] ^
#16 7.899 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#16 7.899 [javac] URL url = new URL(urlPath);
#16 7.899 [javac] ^
#16 7.999 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.999 [javac] BitWriter out = new BitWriter();
#16 7.999 [javac] ^
#16 7.999 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.999 [javac] BitWriter out = new BitWriter();
#16 7.999 [javac] ^
#16 8.100 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.100 [javac] return new Double(v);
#16 8.100 [javac] ^
#16 8.701 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.701 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.701 [javac] ^
#16 8.701 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.701 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.701 [javac] ^
#16 8.701 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.701 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.701 [javac] ^
#16 8.801 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.801 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 8.801 [javac] ^
#16 9.002 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.002 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.002 [javac] ^
#16 9.002 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.002 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.002 [javac] ^
#16 9.102 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.102 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#16 9.102 [javac] ^
#16 9.202 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.202 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.202 [javac] ^
#16 9.202 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.202 [javac] protected ReflectedUniverse r;
#16 9.202 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.203 [javac] r = new ReflectedUniverse();
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.203 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.203 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.203 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#16 9.203 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#16 9.203 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#16 9.203 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#16 9.203 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.203 [javac] ^
#16 9.203 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#16 9.203 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#16 9.204 [javac] ^
#16 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#16 9.204 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#16 9.204 [javac] ^
#16 9.304 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.304 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.304 [javac] ^
#16 9.304 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.304 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.304 [javac] ^
#16 9.304 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.304 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.304 [javac] ^
#16 9.304 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.304 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.304 [javac] ^
#16 9.404 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.404 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.404 [javac] ^
#16 9.404 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.404 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.404 [javac] ^
#16 9.404 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.404 [javac] result[i] = new Double(readNumber().doubleValue());
#16 9.404 [javac] ^
#16 9.404 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.404 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.404 [javac] 56 warnings
#16 9.425
#16 9.425 formats-bsd.jar:
#16 9.434 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.549 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 9.553 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 9.554 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 9.556 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 9.558 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.559
#16 9.559 deps-formats-gpl:
#16 9.559
#16 9.559 jar-formats-gpl:
#16 9.652 [echo] isSnapshot = true
#16 9.788
#16 9.788 init-title:
#16 9.788 [echo] ----------=========== formats-gpl ===========----------
#16 9.788
#16 9.788 init-timestamp:
#16 9.788
#16 9.788 init:
#16 9.788
#16 9.788 copy-resources:
#16 9.788 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.790 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.791
#16 9.791 compile:
#16 10.14 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.97 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.35 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.54 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.66 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.68 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.88 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.00 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.05 [resolver:resolve] Resolving artifacts
#16 12.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.57 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.57 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.93 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.93 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.95 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.16 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 13.16 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 13.16 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 13.16 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 14.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.36 [javac] import loci.formats.codec.BitWriter;
#16 14.36 [javac] ^
#16 14.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.36 [javac] import loci.formats.codec.BitWriter;
#16 14.36 [javac] ^
#16 16.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.36 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.36 [javac] ^
#16 16.36 [javac] cast to Object for a varargs call
#16 16.36 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.36 [javac] BitWriter bits = null;
#16 16.36 [javac] ^
#16 16.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.36 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.36 [javac] ^
#16 16.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.76 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.76 [javac] ^
#16 17.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 17.06 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 17.06 [javac] ^
#16 17.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 17.06 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 17.06 [javac] ^
#16 17.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.16 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.16 [javac] ^
#16 17.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.16 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.16 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 17.36 [javac] Variable variable = group.findVariable(variableName);
#16 17.36 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 17.36 [javac] Variable variable = group.findVariable(variableName);
#16 17.36 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.36 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.36 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.36 [javac] String groupName = group.getName();
#16 17.36 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.36 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.36 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.36 [javac] String variableName = variable.getName();
#16 17.36 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 17.36 [javac] Group nextParent = parent.findGroup(token);
#16 17.36 [javac] ^
#16 17.40 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.40 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.40 [javac] 21 warnings
#16 17.40
#16 17.40 formats-gpl.jar:
#16 17.41 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.56 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 17.56 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 17.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 17.56 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 17.57 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.57
#16 17.57 deps-bio-formats-plugins:
#16 17.57
#16 17.57 jar-bio-formats-plugins:
#16 17.66 [echo] isSnapshot = true
#16 17.79
#16 17.79 init-title:
#16 17.79 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.79
#16 17.79 init-timestamp:
#16 17.79
#16 17.79 init:
#16 17.79
#16 17.79 copy-resources:
#16 17.79 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.79 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.79
#16 17.79 compile:
#16 18.04 [resolver:resolve] Resolving artifacts
#16 18.06 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.27 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 18.27 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 18.27 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 18.27 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 19.08 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.08 [javac] import loci.common.ReflectedUniverse;
#16 19.08 [javac] ^
#16 19.18 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.18 [javac] import loci.common.ReflectedUniverse;
#16 19.18 [javac] ^
#16 19.58 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.58 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.58 [javac] ^
#16 19.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#16 19.68 [javac] URL url = new URL(urlPath);
#16 19.68 [javac] ^
#16 19.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.68 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.68 [javac] ^
#16 19.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.68 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.68 [javac] ^
#16 19.88 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.88 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.88 [javac] ^
#16 19.88 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.88 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.88 [javac] ^
#16 20.08 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#16 20.08 [javac] url = new URL(path);
#16 20.08 [javac] ^
#16 20.26 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.26 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.26 [javac] 13 warnings
#16 20.26
#16 20.26 bio-formats-plugins.jar:
#16 20.27 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.30 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 20.30 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 20.30 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 20.30 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 20.31 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.31
#16 20.31 deps-bio-formats-tools:
#16 20.31
#16 20.31 jar-bio-formats-tools:
#16 20.39 [echo] isSnapshot = true
#16 20.54
#16 20.54 init-title:
#16 20.54 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.54
#16 20.54 init-timestamp:
#16 20.54
#16 20.54 init:
#16 20.54
#16 20.54 copy-resources:
#16 20.54 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.54
#16 20.54 compile:
#16 20.80 [resolver:resolve] Resolving artifacts
#16 20.81 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.02 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 21.02 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 21.02 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 21.02 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 22.16 [javac] 4 warnings
#16 22.16
#16 22.16 bio-formats-tools.jar:
#16 22.17 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.17 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 22.18 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 22.18 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 22.18 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 22.18 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.18
#16 22.18 deps-tests:
#16 22.18
#16 22.18 jar-tests:
#16 22.27 [echo] isSnapshot = true
#16 22.41
#16 22.41 init-title:
#16 22.41 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.41
#16 22.41 init-timestamp:
#16 22.41
#16 22.41 init:
#16 22.41
#16 22.41 copy-resources:
#16 22.41 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.41
#16 22.41 compile:
#16 22.71 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.80 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.17 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.19 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.61 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.05 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.06 [resolver:resolve] Resolving artifacts
#16 24.07 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.13 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.48 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.49 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.90 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.26 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.27 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.48 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 25.48 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 25.48 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 25.48 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 26.48 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.48 [javac] int index = unflattenedReader.getCoreIndex();
#16 26.48 [javac] ^
#16 26.48 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 26.48 [javac] reader.setCoreIndex(index);
#16 26.48 [javac] ^
#16 26.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.68 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.68 [javac] ^
#16 26.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.68 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.68 [javac] ^
#16 26.98 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.98 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.98 [javac] ^
#16 26.98 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.98 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.98 [javac] ^
#16 26.98 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.98 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.98 [javac] 10 warnings
#16 27.01
#16 27.01 tests.jar:
#16 27.01 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 27.03 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 27.03 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 27.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 27.03 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.03 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.04
#16 27.04 jars:
#16 27.04
#16 27.04 copy-jars:
#16 27.04
#16 27.04 deps-formats-api:
#16 27.08 [echo] isSnapshot = true
#16 27.13
#16 27.13 install-pom:
#16 27.25 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 27.25 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.25 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 27.25
#16 27.25 jar-formats-api:
#16 27.38 [echo] isSnapshot = true
#16 27.51
#16 27.51 init-title:
#16 27.51 [echo] ----------=========== formats-api ===========----------
#16 27.51
#16 27.51 init-timestamp:
#16 27.51
#16 27.51 init:
#16 27.51
#16 27.51 copy-resources:
#16 27.51
#16 27.51 compile:
#16 27.64 [resolver:resolve] Resolving artifacts
#16 27.65
#16 27.65 formats-api.jar:
#16 27.67 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 27.67 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 27.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 27.68 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.68 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.68
#16 27.68 deps-turbojpeg:
#16 27.68
#16 27.68 jar-turbojpeg:
#16 27.76 [echo] isSnapshot = true
#16 27.89
#16 27.89 init-title:
#16 27.89 [echo] ----------=========== turbojpeg ===========----------
#16 27.89
#16 27.89 init-timestamp:
#16 27.89
#16 27.89 init:
#16 27.89
#16 27.89 copy-resources:
#16 27.89
#16 27.89 compile:
#16 27.90 [resolver:resolve] Resolving artifacts
#16 27.90
#16 27.90 jar:
#16 27.91 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 27.91 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 27.92 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 27.92 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.92 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.92
#16 27.92 deps-formats-bsd:
#16 27.92
#16 27.92 jar-formats-bsd:
#16 28.00 [echo] isSnapshot = true
#16 28.12
#16 28.12 init-title:
#16 28.12 [echo] ----------=========== formats-bsd ===========----------
#16 28.12
#16 28.12 init-timestamp:
#16 28.12
#16 28.12 init:
#16 28.12
#16 28.12 copy-resources:
#16 28.12
#16 28.12 compile:
#16 28.31 [resolver:resolve] Resolving artifacts
#16 28.33
#16 28.33 formats-bsd.jar:
#16 28.38 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 28.38 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 28.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 28.39 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.39 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.39
#16 28.39 deps-formats-gpl:
#16 28.39
#16 28.39 jar-formats-gpl:
#16 28.47 [echo] isSnapshot = true
#16 28.60
#16 28.60 init-title:
#16 28.60 [echo] ----------=========== formats-gpl ===========----------
#16 28.60
#16 28.60 init-timestamp:
#16 28.60
#16 28.60 init:
#16 28.60
#16 28.60 copy-resources:
#16 28.60
#16 28.60 compile:
#16 28.84 [resolver:resolve] Resolving artifacts
#16 28.86
#16 28.86 formats-gpl.jar:
#16 28.90 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 28.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 28.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 28.90 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.91 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.91
#16 28.91 deps-bio-formats-plugins:
#16 28.91
#16 28.91 jar-bio-formats-plugins:
#16 28.99 [echo] isSnapshot = true
#16 29.11
#16 29.11 init-title:
#16 29.11 [echo] ----------=========== bio-formats_plugins ===========----------
#16 29.11
#16 29.11 init-timestamp:
#16 29.11
#16 29.11 init:
#16 29.11
#16 29.11 copy-resources:
#16 29.12
#16 29.12 compile:
#16 29.35 [resolver:resolve] Resolving artifacts
#16 29.36
#16 29.36 bio-formats-plugins.jar:
#16 29.38 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 29.38 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 29.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 29.38 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.38 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.39
#16 29.39 deps-bio-formats-tools:
#16 29.39
#16 29.39 jar-bio-formats-tools:
#16 29.47 [echo] isSnapshot = true
#16 29.60
#16 29.60 init-title:
#16 29.60 [echo] ----------=========== bio-formats-tools ===========----------
#16 29.60
#16 29.60 init-timestamp:
#16 29.60
#16 29.60 init:
#16 29.60
#16 29.60 copy-resources:
#16 29.60
#16 29.60 compile:
#16 29.84 [resolver:resolve] Resolving artifacts
#16 29.85
#16 29.85 bio-formats-tools.jar:
#16 29.85 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 29.85 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 29.86 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 29.86 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.86 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.86
#16 29.86 deps-tests:
#16 29.86
#16 29.86 jar-tests:
#16 29.94 [echo] isSnapshot = true
#16 30.07
#16 30.07 init-title:
#16 30.07 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 30.07
#16 30.07 init-timestamp:
#16 30.07
#16 30.07 init:
#16 30.07
#16 30.07 copy-resources:
#16 30.07
#16 30.07 compile:
#16 30.30 [resolver:resolve] Resolving artifacts
#16 30.31
#16 30.31 tests.jar:
#16 30.32 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 30.32 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 30.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 30.33 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.33 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.33
#16 30.33 jars:
#16 30.33
#16 30.33 tools:
#16 30.33 [echo] ----------=========== bioformats_package ===========----------
#16 30.41 [echo] isSnapshot = true
#16 30.60
#16 30.60 init-timestamp:
#16 30.60
#16 30.60 bundle:
#16 30.85 [resolver:resolve] Resolving artifacts
#16 30.86 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.89 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.91 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.93 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.93 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.99 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.00 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.06 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.27 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.34 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.35 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.41 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.42 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.43 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.43 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.58 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.03 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.03 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.03 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.04 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.12 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.12 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.17 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.23 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.25 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.44 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.48 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.48 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.57 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.59 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.00 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.02 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.05 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.14 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.15 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.17 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.18 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.38 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.44 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.49 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.71 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.72 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.15 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.16 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.29 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.34 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.35 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.36 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.41 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.44 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.76 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.78 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.79 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.80 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.80 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.83 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.17 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.27 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.68 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 42.44 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.00 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 43.01 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 43.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 43.11 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 43.11 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 43.12
#16 43.12 BUILD SUCCESSFUL
#16 43.12 Total time: 42 seconds
#16 DONE 45.4s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.5s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.0s done
#18 writing image sha256:a70d4b97329de39b4010f20946be8459d9b05d8559a7ab68c1cd8384b8acff21 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.0s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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