09:21:37 Started by upstream project "Trigger" build number 100
09:21:37 originally caused by:
09:21:37 Started by user devspace
09:21:37 Running as SYSTEM
09:21:37 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:21:37 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4221619493348968019.sh
09:21:37 + source /home/settings.env
09:21:37 ++ OMERO_DB_HOST=pg
09:21:37 ++ OMERO_DB_USER=postgres
09:21:37 ++ OMERO_DB_PASS=
09:21:37 ++ OMERO_ROOT_PASS=omero
09:21:37 ++ OMERO_DATA_DIR=/OMERO
09:21:37 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:21:37 + OMERO_DB_NAME=OMERO-server
09:21:37 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:21:37 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:21:37 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:21:37 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:21:37 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:21:37 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:21:37 ++ deactivate nondestructive
09:21:37 ++ '[' -n '' ']'
09:21:37 ++ '[' -n '' ']'
09:21:37 ++ hash -r
09:21:37 ++ '[' -n '' ']'
09:21:37 ++ unset VIRTUAL_ENV
09:21:37 ++ unset VIRTUAL_ENV_PROMPT
09:21:37 ++ '[' '!' nondestructive = nondestructive ']'
09:21:37 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:21:37 ++ export VIRTUAL_ENV
09:21:37 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:21:37 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:21:37 ++ export PATH
09:21:37 ++ '[' -n '' ']'
09:21:37 ++ '[' -z '' ']'
09:21:37 ++ _OLD_VIRTUAL_PS1=
09:21:37 ++ PS1='(.venv3) '
09:21:37 ++ export PS1
09:21:37 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:21:37 ++ export VIRTUAL_ENV_PROMPT
09:21:37 ++ hash -r
09:21:37 + omero admin stop
09:22:08 Waiting on shutdown. Use CTRL-C to exit
09:22:08 .+ sleep 5
09:22:24 + deactivate
09:22:24 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:22:24 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:22:24 + export PATH
09:22:24 + unset _OLD_VIRTUAL_PATH
09:22:24 + '[' -n '' ']'
09:22:24 + hash -r
09:22:24 + '[' -n '' ']'
09:22:24 + unset VIRTUAL_ENV
09:22:24 + unset VIRTUAL_ENV_PROMPT
09:22:24 + '[' '!' '' = nondestructive ']'
09:22:24 + unset -f deactivate
09:22:24 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:25:28 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
09:25:50 + '[' false = true ']'
09:25:50 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:25:50 Skipping PURGE_DATA:CleanDbAndRepo
09:25:50 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:26:01 Copied 1 artifact from "OMERO-build" build number 81
09:26:02 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 72
09:26:03 Copied 2 artifacts from "OMERO-build-build" build number 83
09:26:03 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16489137014862297529.sh
09:26:03 + source /home/settings.env
09:26:03 ++ OMERO_DB_HOST=pg
09:26:03 ++ OMERO_DB_USER=postgres
09:26:03 ++ OMERO_DB_PASS=
09:26:03 ++ OMERO_ROOT_PASS=omero
09:26:03 ++ OMERO_DATA_DIR=/OMERO
09:26:03 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:26:03 + OMERO_DB_NAME=OMERO-server
09:26:03 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:26:03 + mkdir -p /home/omero/omero-server-data
09:26:03 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:26:03 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:26:03 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:26:03 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:26:03 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:26:03 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:26:03 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:26:03 ++ ls OMERO.server-5.6.3-680-6e43949dc6-ice36-b81.zip
09:26:03 + ZIP=OMERO.server-5.6.3-680-6e43949dc6-ice36-b81.zip
09:26:03 + '[' '!' -z '' ']'
09:26:03 + DIST=OMERO.server-5.6.3-680-6e43949dc6-ice36-b81
09:26:03 + unzip OMERO.server-5.6.3-680-6e43949dc6-ice36-b81.zip
09:26:03 Archive: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81.zip
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/blitz/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/grid/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/profiles/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/error/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/grid/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/luts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/luts/janelia/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/luts/matplotlib/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/luts/ncsa_paledit/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/luts/seaborn/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/luts/wcif/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/omero/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/omero/analysis_scripts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/omero/annotation_scripts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/omero/export_scripts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/omero/figure_scripts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/omero/import_scripts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/scripts/omero/util_scripts/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/server/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/misc/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__1/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__10/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__11/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__2/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__3/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__4/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__5/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__6/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__7/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__8/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__9/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__4/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__5/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__6/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__7/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.1__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.2__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.2__0/t/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.3__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.4__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.0__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.1__1/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.2__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.3__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4DEV__1/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4DEV__2/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4DEV__3/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/var/
09:26:03 creating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/var/tmp/
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/LICENSE.txt
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/backup.cfg
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/blitz/mail-senders.example
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/blitz/mail-server.example
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/build.properties
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/env.bat
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/env.sh
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/hibernate.properties
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/ice.config
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/logback-cli.xml
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/logback-indexing-cli.xml
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/logback-indexing.xml
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/logback.xml
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/mime.types
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/node1.cfg
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/node2.cfg
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/omero.properties
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/profiles/psql
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/rollover.cfg
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/Windows.cfg
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/error/maintainance.html
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/grid/README
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/grid/default.xml
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/grid/templates.xml
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/grid/windefault.xml
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/ice.config
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/internal.cfg
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/master.cfg
09:26:03 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/templates/robot.template
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/etc/testdropbox.config
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/history.rst
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/accessors-smart.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/activation.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/aggdesigner-algorithm.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/aircompressor.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/annotations.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/antlr.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/aopalliance.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/apache-client.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/apiguardian-api.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/arns.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/asm.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/auth.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/avatica-core.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/avatica-metrics.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/aws-core.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/aws-query-protocol.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/aws-xml-protocol.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/base.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-anim.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-awt-util.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-bridge.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-codec.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-constants.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-css.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-dom.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-ext.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-gvt.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-i18n.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-parser.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-script.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-shared-resources.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-svg-dom.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-svggen.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-transcoder.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-util.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/batik-xml.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/blosc-java.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/btm.jar
09:26:04 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/lib/client/caffeine.jar
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09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/apache-v1.1.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/apache-v2.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/asm.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/bouncy_castle_license.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/bsd.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/cddl-v1.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/cpl-v10.html
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/crystalclear.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/django.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/dom4j.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/epl-v1.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/fbsd.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/freemarker.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/gpl-v2.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/gpl.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/gtest.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/iconsweets_license.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/jamon.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/jmock.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/jquery.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/jtidy.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/lgpl-3.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/lgpl-v2.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/lgpl-v2.1.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/lgpl-v3.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/lgpl.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/matplotlib.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/mit.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/mpl-v1_0.htm
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/npl-1_1.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/path.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/pil.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/postgresql.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/psf-v2.0.txt
09:26:20 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/psf-v2.5.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/scons.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/slf4j.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/tablelayout.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/which.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/zlib-libpng.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/share/licenses/zpl-v2.1.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/README.txt
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/misc/Makefile
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/misc/current.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/misc/enums.py
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__1/OMERO3__7.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__10/OMERO3A__9.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__11/OMERO3A__10.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__11/OMERO3A__5.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__2/OMERO3A__1.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__3/OMERO3A__2.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__3/OMERO3__5.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__4/OMERO3A__3.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__4/OMERO3__5.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__5/OMERO3A__4.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__6/OMERO3A__5.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__7/OMERO3A__6.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__8/OMERO3A__6.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3A__9/OMERO3A__8.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__4/OMERO3__1.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__5/OMERO3__4.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__6/OMERO3__5.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO3__7/OMERO3__6.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.1__0/OMERO4__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO4__0/OMERO3A__11.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/psql-footer.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/psql-header.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/schema.sql
09:26:21 inflating: OMERO.server-5.6.3-680-6e43949dc6-ice36-b81/sql/psql/OMERO5.4__0/views.sql
09:26:22 + rm -f OMERO.server-5.6.3-680-6e43949dc6-ice36-b81.zip
09:26:22 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-680-6e43949dc6-ice36-b81 /home/omero/workspace/OMERO-server/OMERO.server
09:26:22 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:26:22 ++ deactivate nondestructive
09:26:22 ++ '[' -n '' ']'
09:26:22 ++ '[' -n '' ']'
09:26:22 ++ hash -r
09:26:22 ++ '[' -n '' ']'
09:26:22 ++ unset VIRTUAL_ENV
09:26:22 ++ unset VIRTUAL_ENV_PROMPT
09:26:22 ++ '[' '!' nondestructive = nondestructive ']'
09:26:22 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:26:22 ++ export VIRTUAL_ENV
09:26:22 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:26:22 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:26:22 ++ export PATH
09:26:22 ++ '[' -n '' ']'
09:26:22 ++ '[' -z '' ']'
09:26:22 ++ _OLD_VIRTUAL_PS1=
09:26:22 ++ PS1='(.venv3) '
09:26:22 ++ export PS1
09:26:22 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:26:22 ++ export VIRTUAL_ENV_PROMPT
09:26:22 ++ hash -r
09:26:22 + pip install -U pip
09:26:23 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
09:26:23 Collecting pip
09:26:23 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
09:26:23 Installing collected packages: pip
09:26:23 Attempting uninstall: pip
09:26:23 Found existing installation: pip 22.3.1
09:26:24 Uninstalling pip-22.3.1:
09:26:24 Successfully uninstalled pip-22.3.1
09:26:38 Successfully installed pip-26.2.1
09:26:38 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
09:26:39 Collecting zeroc-ice==3.6.5
09:26:39 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:26:42 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.6 MB/s 0:00:02
09:26:42 Installing collected packages: zeroc-ice
09:26:52 Successfully installed zeroc-ice-3.6.5
09:26:52 + pip install markdown
09:26:53 Collecting markdown
09:26:53 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB)
09:26:53 Using cached markdown-3.10.3-py3-none-any.whl (110 kB)
09:26:53 Installing collected packages: markdown
09:26:55 Successfully installed markdown-3.10.3
09:26:55 + pip install reportlab
09:26:57 Collecting reportlab
09:26:57 Using cached reportlab-5.0.1-py3-none-any.whl.metadata (1.6 kB)
09:26:57 Collecting pillow>=9.0.0 (from reportlab)
09:26:57 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
09:26:57 Collecting charset-normalizer (from reportlab)
09:26:57 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB)
09:26:57 Using cached reportlab-5.0.1-py3-none-any.whl (2.0 MB)
09:26:57 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
09:26:58 Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
09:26:58 Installing collected packages: pillow, charset-normalizer, reportlab
09:27:08
09:27:08 Successfully installed charset-normalizer-3.5.1 pillow-12.3.0 reportlab-5.0.1
09:27:08 + pip install pyarrow
09:27:09 Collecting pyarrow
09:27:09 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
09:27:09 Using cached pyarrow-25.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (50.1 MB)
09:27:10 Installing collected packages: pyarrow
09:27:20 Successfully installed pyarrow-25.0.1
09:27:21 + pip install omego
09:27:22 Collecting omego
09:27:22 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
09:27:22 Collecting future (from omego)
09:27:22 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
09:27:22 Collecting yaclifw>=0.1.1 (from omego)
09:27:22 Using cached yaclifw-0.2.0-py3-none-any.whl
09:27:22 Collecting six (from yaclifw>=0.1.1->omego)
09:27:22 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
09:27:22 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
09:27:22 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:27:23 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
09:27:23 Installing collected packages: six, future, yaclifw, omego
09:27:28
09:27:28 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
09:27:28 + pip install tables
09:27:29 Collecting tables
09:27:29 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
09:27:30 Collecting numpy>=1.20.0 (from tables)
09:27:30 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
09:27:30 Collecting numexpr>=2.6.2 (from tables)
09:27:30 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
09:27:30 Collecting packaging (from tables)
09:27:30 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
09:27:30 Collecting py-cpuinfo (from tables)
09:27:30 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:27:30 Collecting blosc2>=2.3.0 (from tables)
09:27:30 Using cached blosc2-4.13.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.0 kB)
09:27:31 Collecting ndindex (from blosc2>=2.3.0->tables)
09:27:31 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
09:27:31 Collecting msgpack (from blosc2>=2.3.0->tables)
09:27:31 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
09:27:31 Collecting pydantic (from blosc2>=2.3.0->tables)
09:27:31 Using cached pydantic-2.13.5-py3-none-any.whl.metadata (110 kB)
09:27:31 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
09:27:31 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
09:27:31 Collecting rich (from blosc2>=2.3.0->tables)
09:27:31 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
09:27:32 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
09:27:32 Using cached threadpoolctl-3.7.0-py3-none-any.whl.metadata (24 kB)
09:27:32 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
09:27:32 Using cached anyio-4.15.1-py3-none-any.whl.metadata (4.7 kB)
09:27:32 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
09:27:32 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
09:27:32 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
09:27:32 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
09:27:32 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
09:27:32 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
09:27:32 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
09:27:32 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
09:27:32 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
09:27:32 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
09:27:33 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
09:27:33 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
09:27:33 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
09:27:33 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
09:27:33 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
09:27:33 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
09:27:33 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
09:27:33 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
09:27:34 Collecting pydantic-core==2.46.5 (from pydantic->blosc2>=2.3.0->tables)
09:27:34 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
09:27:34 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
09:27:34 Using cached typing_inspection-0.4.4-py3-none-any.whl.metadata (2.6 kB)
09:27:34 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
09:27:34 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
09:27:34 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
09:27:34 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB)
09:27:34 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
09:27:34 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
09:27:34 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
09:27:34 Using cached blosc2-4.13.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
09:27:34 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
09:27:34 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:27:35 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
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09:27:35 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
09:27:35 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
09:27:35 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
09:27:35 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
09:27:35 Using cached anyio-4.15.1-py3-none-any.whl (132 kB)
09:27:35 Using cached idna-3.20-py3-none-any.whl (69 kB)
09:27:35 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
09:27:35 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
09:27:35 Using cached msgpack-1.2.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (422 kB)
09:27:35 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
09:27:35 Using cached packaging-26.3-py3-none-any.whl (129 kB)
09:27:35 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:27:35 Using cached pydantic-2.13.5-py3-none-any.whl (472 kB)
09:27:36 Using cached pydantic_core-2.46.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
09:27:36 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
09:27:36 Using cached typing_inspection-0.4.4-py3-none-any.whl (14 kB)
09:27:36 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
09:27:36 Using cached pygments-2.21.0-py3-none-any.whl (1.3 MB)
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09:27:36 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
09:27:36 Using cached threadpoolctl-3.7.0-py3-none-any.whl (26 kB)
09:27:36 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
09:28:28
09:28:28 Successfully installed annotated-types-0.8.0 anyio-4.15.1 blosc2-4.13.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.2 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.5 pydantic-core-2.46.5 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.7.0 typing-inspection-0.4.4 typing_extensions-4.16.0
09:28:28 + pip install jinja2
09:28:29 Collecting jinja2
09:28:29 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
09:28:29 Collecting MarkupSafe>=2.0 (from jinja2)
09:28:29 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
09:28:29 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
09:28:29 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
09:28:30 Installing collected packages: MarkupSafe, jinja2
09:28:31
09:28:31 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
09:28:31 + pip install omero-py
09:28:32 Collecting omero-py
09:28:32 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
09:28:32 Collecting appdirs (from omero-py)
09:28:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:28:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
09:28:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
09:28:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
09:28:32 Collecting PyYAML (from omero-py)
09:28:32 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
09:28:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:28:32 Collecting requests (from omero-py)
09:28:32 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
09:28:32 Collecting portalocker (from omero-py)
09:28:32 Using cached portalocker-4.3.2-py3-none-any.whl.metadata (10 kB)
09:28:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.5.1)
09:28:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.20)
09:28:33 Collecting urllib3<3,>=1.26 (from requests->omero-py)
09:28:33 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB)
09:28:33 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
09:28:33 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
09:28:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:28:33 Using cached portalocker-4.3.2-py3-none-any.whl (128 kB)
09:28:33 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:28:33 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
09:28:33 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
09:28:33 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
09:28:52
09:28:52 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.3.2 requests-2.34.2 urllib3-2.8.0
09:28:52 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:28:53 Collecting omero-metadata
09:28:53 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-t5s1lhi3/omero-metadata_c415aabd665349f5bf0282326b4fb80b
09:28:53 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-t5s1lhi3/omero-metadata_c415aabd665349f5bf0282326b4fb80b
09:28:54 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit fb0f42fe9694c5d8af085c34de4dc929a9d4755d
09:28:54 Installing build dependencies: started
09:28:56 Installing build dependencies: finished with status 'done'
09:28:56 Getting requirements to build wheel: started
09:28:56 Getting requirements to build wheel: finished with status 'done'
09:28:56 Preparing metadata (pyproject.toml): started
09:28:56 Preparing metadata (pyproject.toml): finished with status 'done'
09:28:56 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0)
09:28:57 Collecting pandas<3,>=2 (from omero-metadata)
09:28:57 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
09:28:57 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
09:28:57 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
09:28:57 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:28:57 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
09:28:57 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
09:28:57 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
09:28:57 Using cached tzdata-2026.4-py2.py3-none-any.whl.metadata (1.4 kB)
09:28:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:28:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:28:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
09:28:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
09:28:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:28:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
09:28:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.3.2)
09:28:57 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0)
09:28:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.1)
09:28:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20)
09:28:57 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0)
09:28:57 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
09:28:57 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
09:28:57 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:28:58 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB)
09:28:58 Using cached tzdata-2026.4-py2.py3-none-any.whl (347 kB)
09:28:58 Building wheels for collected packages: omero-metadata
09:28:58 Building wheel for omero-metadata (pyproject.toml): started
09:28:58 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:28:58 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=91685b74eb5bec1e56264235e0e757816a73e2157c2b1363e32d8577a532d008
09:28:58 Stored in directory: /tmp/pip-ephem-wheel-cache-8r2bwtoy/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
09:28:58 Successfully built omero-metadata
09:28:58 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
09:29:50
09:29:50 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.4
09:29:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:29:51 Collecting omero-cli-render
09:29:51 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-jn6h5gvz/omero-cli-render_be8cd198e9244d359e762e719fbdcf3d
09:29:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-jn6h5gvz/omero-cli-render_be8cd198e9244d359e762e719fbdcf3d
09:29:53 Running command git checkout -b merge_ci --track origin/merge_ci
09:29:53 Switched to a new branch 'merge_ci'
09:29:53 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:29:53 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit bfb532bba26f8536c49903c2b6c8e0d51a7a2f71
09:29:53 Installing build dependencies: started
09:29:54 Installing build dependencies: finished with status 'done'
09:29:54 Getting requirements to build wheel: started
09:29:55 Getting requirements to build wheel: finished with status 'done'
09:29:55 Preparing metadata (pyproject.toml): started
09:29:55 Preparing metadata (pyproject.toml): finished with status 'done'
09:29:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
09:29:55 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0)
09:29:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:29:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
09:29:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
09:29:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
09:29:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:29:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
09:29:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.3.2)
09:29:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.1)
09:29:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20)
09:29:55 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0)
09:29:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
09:29:55 Building wheels for collected packages: omero-cli-render
09:29:55 Building wheel for omero-cli-render (pyproject.toml): started
09:29:55 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:29:55 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=b766d6e11c756052a14654c43c0e38759b67ace216e03f018ab88d7a2bd5ddf6
09:29:55 Stored in directory: /tmp/pip-ephem-wheel-cache-k7m6o0h4/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
09:29:55 Successfully built omero-cli-render
09:29:55 Installing collected packages: omero-cli-render
09:29:55 Successfully installed omero-cli-render-0.8.2.dev0
09:29:56 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:29:56 Collecting omero-cli-duplicate
09:29:56 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-8w2sqs9j/omero-cli-duplicate_fdd1bbdbd45848de9ede0eb4fb28218f
09:29:56 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-8w2sqs9j/omero-cli-duplicate_fdd1bbdbd45848de9ede0eb4fb28218f
09:29:58 Running command git checkout -b merge_ci --track origin/merge_ci
09:29:58 Switched to a new branch 'merge_ci'
09:29:58 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:29:58 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 7048e8f174f594782769d412073a5bc86ea9d018
09:29:58 Installing build dependencies: started
09:29:59 Installing build dependencies: finished with status 'done'
09:29:59 Getting requirements to build wheel: started
09:29:59 Getting requirements to build wheel: finished with status 'done'
09:29:59 Preparing metadata (pyproject.toml): started
09:30:00 Preparing metadata (pyproject.toml): finished with status 'done'
09:30:00 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
09:30:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:30:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:30:00 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
09:30:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
09:30:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
09:30:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:30:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
09:30:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.3.2)
09:30:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.1)
09:30:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20)
09:30:00 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0)
09:30:00 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
09:30:00 Building wheels for collected packages: omero-cli-duplicate
09:30:00 Building wheel for omero-cli-duplicate (pyproject.toml): started
09:30:00 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:30:00 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=4e5b4c7fc27a7a77a72cba613754b9c31c1f8595ad0a0b638e50f5bc7305899a
09:30:00 Stored in directory: /tmp/pip-ephem-wheel-cache-sdiuf68i/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
09:30:00 Successfully built omero-cli-duplicate
09:30:00 Installing collected packages: omero-cli-duplicate
09:30:00 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:30:00 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
09:30:01 Collecting omero-cli-zarr
09:30:01 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-9qmko73a/omero-cli-zarr_45130000525f4686b53ffe640d9d7f5c
09:30:01 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-9qmko73a/omero-cli-zarr_45130000525f4686b53ffe640d9d7f5c
09:30:03 Running command git checkout -b merge_ci --track origin/merge_ci
09:30:04 Switched to a new branch 'merge_ci'
09:30:04 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:30:04 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 402e1d1dcf410a614c3cb55b2af861828a93d25d
09:30:04 Installing build dependencies: started
09:30:05 Installing build dependencies: finished with status 'done'
09:30:05 Getting requirements to build wheel: started
09:30:05 Getting requirements to build wheel: finished with status 'done'
09:30:05 Installing backend dependencies: started
09:30:07 Installing backend dependencies: finished with status 'done'
09:30:07 Preparing metadata (pyproject.toml): started
09:30:07 Preparing metadata (pyproject.toml): finished with status 'done'
09:30:07 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
09:30:08 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
09:30:08 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
09:30:08 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
09:30:08 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:08 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB)
09:30:08 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:08 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
09:30:08 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:08 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB)
09:30:09 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:09 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
09:30:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
09:30:09 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:09 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
09:30:09 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:09 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
09:30:09 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:09 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
09:30:10 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:10 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
09:30:10 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
09:30:10 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
09:30:10 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:10 Using cached click-8.5.0-py3-none-any.whl.metadata (2.6 kB)
09:30:10 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:10 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
09:30:10 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
09:30:10 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:10 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
09:30:10 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
09:30:10 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:10 Using cached importlib_metadata-9.0.1-py3-none-any.whl.metadata (4.5 kB)
09:30:11 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:30:11 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:11 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
09:30:11 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:11 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
09:30:11 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:11 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB)
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09:30:12 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:12 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
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09:30:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
09:30:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
09:30:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0)
09:30:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
09:30:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.3.2)
09:30:12 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:12 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
09:30:12 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:30:12 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:30:13 Collecting botocore<1.43.76,>=1.43.66 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:30:13 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
09:30:13 Using cached multidict-6.8.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
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09:30:14 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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09:30:14 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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09:30:14 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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09:30:17 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB)
09:30:17 Using cached aiobotocore-3.9.1-py3-none-any.whl (102 kB)
09:30:17 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
09:30:17 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
09:30:17 Using cached botocore-1.43.75-py3-none-any.whl (15.7 MB)
09:30:17 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
09:30:17 Using cached multidict-6.8.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (272 kB)
09:30:17 Using cached wrapt-2.4.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (226 kB)
09:30:17 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB)
09:30:17 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
09:30:17 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
09:30:18 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
09:30:18 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
09:30:18 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB)
09:30:18 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
09:30:18 Using cached imageio-2.37.4-py3-none-any.whl (318 kB)
09:30:18 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
09:30:18 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
09:30:18 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
09:30:18 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
09:30:18 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
09:30:18 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
09:30:19 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
09:30:19 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
09:30:19 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
09:30:19 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
09:30:19 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
09:30:19 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
09:30:19 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
09:30:19 Building wheels for collected packages: omero-cli-zarr
09:30:19 Building wheel for omero-cli-zarr (pyproject.toml): started
09:30:20 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
09:30:20 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+g402e1d1-py3-none-any.whl size=39538 sha256=991d99510bf0459e2867f4bb0a90f1cad4e44240c4a1db6b28921ba064cab5b0
09:30:20 Stored in directory: /tmp/pip-ephem-wheel-cache-esdxro8u/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
09:30:20 Successfully built omero-cli-zarr
09:30:20 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
09:31:05 Attempting uninstall: pydantic-core
09:31:05 Found existing installation: pydantic_core 2.46.5
09:31:05 Uninstalling pydantic_core-2.46.5:
09:31:05 Successfully uninstalled pydantic_core-2.46.5
09:31:40 Attempting uninstall: pydantic
09:31:41 Found existing installation: pydantic 2.13.5
09:31:41 Uninstalling pydantic-2.13.5:
09:31:41 Successfully uninstalled pydantic-2.13.5
09:32:24
09:32:24 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.1 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.75 click-8.5.0 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.1 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.8.0 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+g402e1d1 partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.4.1 yarl-1.25.1 zarr-3.1.6 zipp-4.1.0
09:32:24 + pip install omero-certificates
09:32:26 Collecting omero-certificates
09:32:26 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
09:32:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0)
09:32:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
09:32:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
09:32:26 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
09:32:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
09:32:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
09:32:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
09:32:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
09:32:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.3.2)
09:32:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.1)
09:32:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20)
09:32:26 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0)
09:32:26 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
09:32:26 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
09:32:26 Installing collected packages: omero-certificates
09:32:26 Successfully installed omero-certificates-0.4.0
09:32:26 + for x in *.tar.gz
09:32:26 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
09:32:27 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
09:32:27 Installing build dependencies: started
09:32:29 Installing build dependencies: finished with status 'done'
09:32:29 Getting requirements to build wheel: started
09:32:29 Getting requirements to build wheel: finished with status 'done'
09:32:29 Preparing metadata (pyproject.toml): started
09:32:29 Preparing metadata (pyproject.toml): finished with status 'done'
09:32:29 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
09:32:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
09:32:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
09:32:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
09:32:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
09:32:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
09:32:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
09:32:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
09:32:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.3.2)
09:32:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.1)
09:32:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20)
09:32:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0)
09:32:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
09:32:29 Building wheels for collected packages: omero-dropbox
09:32:29 Building wheel for omero-dropbox (pyproject.toml): started
09:32:30 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
09:32:30 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=6e902c918ccc3c861cdcfc711c227a62b8464a43b16448c5b9902acbb2b577d3
09:32:30 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
09:32:30 Successfully built omero-dropbox
09:32:30 Installing collected packages: omero-dropbox
09:32:31 Successfully installed omero-dropbox-5.7.1.dev0
09:32:31 + for x in *.tar.gz
09:32:31 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
09:32:32 Processing ./omero_marshal-0.9.2.dev0.tar.gz
09:32:32 Installing build dependencies: started
09:32:33 Installing build dependencies: finished with status 'done'
09:32:33 Getting requirements to build wheel: started
09:32:33 Getting requirements to build wheel: finished with status 'done'
09:32:33 Preparing metadata (pyproject.toml): started
09:32:34 Preparing metadata (pyproject.toml): finished with status 'done'
09:32:34 Building wheels for collected packages: omero_marshal
09:32:34 Building wheel for omero_marshal (pyproject.toml): started
09:32:34 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
09:32:34 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=97ebe79408c1c9ef79327b87bb17ceadcbb49a3487b3512e2b60e04e66de7cd6
09:32:34 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
09:32:34 Successfully built omero_marshal
09:32:34 Installing collected packages: omero_marshal
09:32:37 Successfully installed omero_marshal-0.9.2.dev0
09:32:37 + for x in *.tar.gz
09:32:37 + pip install -U omero_py-5.23.1.dev0.tar.gz
09:32:38 Processing ./omero_py-5.23.1.dev0.tar.gz
09:32:38 Installing build dependencies: started
09:32:39 Installing build dependencies: finished with status 'done'
09:32:39 Getting requirements to build wheel: started
09:32:40 Getting requirements to build wheel: finished with status 'done'
09:32:40 Preparing metadata (pyproject.toml): started
09:32:40 Preparing metadata (pyproject.toml): finished with status 'done'
09:32:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
09:32:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
09:32:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
09:32:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
09:32:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
09:32:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
09:32:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
09:32:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.3.2)
09:32:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.1)
09:32:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20)
09:32:40 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0)
09:32:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22)
09:32:40 Building wheels for collected packages: omero-py
09:32:40 Building wheel for omero-py (pyproject.toml): started
09:32:41 Building wheel for omero-py (pyproject.toml): finished with status 'done'
09:32:41 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787190 sha256=7d6876ca3d0d869bf649a73d3d19cc84073616d7c8eade8b6da436dc484ee52c
09:32:41 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
09:32:41 Successfully built omero-py
09:32:41 Installing collected packages: omero-py
09:32:41 Attempting uninstall: omero-py
09:32:41 Found existing installation: omero-py 5.23.0
09:32:42 Uninstalling omero-py-5.23.0:
09:32:55 Successfully uninstalled omero-py-5.23.0
09:33:11 Successfully installed omero-py-5.23.1.dev0
09:33:11 + for x in *.tar.gz
09:33:11 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
09:33:12 Processing ./omero_scripts-5.10.1.dev0.tar.gz
09:33:12 Installing build dependencies: started
09:33:14 Installing build dependencies: finished with status 'done'
09:33:14 Getting requirements to build wheel: started
09:33:14 Getting requirements to build wheel: finished with status 'done'
09:33:14 Preparing metadata (pyproject.toml): started
09:33:14 Preparing metadata (pyproject.toml): finished with status 'done'
09:33:14 Building wheels for collected packages: omero-scripts
09:33:14 Building wheel for omero-scripts (pyproject.toml): started
09:33:14 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
09:33:14 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=429a4a83c22295f0f40c2f4cc0f32e7b31c155349a803cbc82f8f137997d3fa5
09:33:14 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
09:33:14 Successfully built omero-scripts
09:33:15 Installing collected packages: omero-scripts
09:33:16 Successfully installed omero-scripts-5.10.1.dev0
09:33:16 + for x in *.tar.gz
09:33:16 + pip install -U omero_web-5.33.2.dev0.tar.gz
09:33:17 Processing ./omero_web-5.33.2.dev0.tar.gz
09:33:17 Installing build dependencies: started
09:33:18 Installing build dependencies: finished with status 'done'
09:33:18 Getting requirements to build wheel: started
09:33:18 Getting requirements to build wheel: finished with status 'done'
09:33:18 Preparing metadata (pyproject.toml): started
09:33:19 Preparing metadata (pyproject.toml): finished with status 'done'
09:33:19 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (5.23.1.dev0)
09:33:19 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.2.dev0)
09:33:19 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
09:33:19 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.2.dev0)
09:33:19 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB)
09:33:19 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.2.dev0)
09:33:19 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
09:33:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.2.dev0)
09:33:20 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
09:33:20 Collecting whitenoise>=5.3.0 (from omero-web==5.33.2.dev0)
09:33:20 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
09:33:20 Collecting gunicorn>=19.3 (from omero-web==5.33.2.dev0)
09:33:20 Using cached gunicorn-26.2.0-py3-none-any.whl.metadata (5.5 kB)
09:33:20 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (0.9.2.dev0)
09:33:20 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (12.3.0)
09:33:20 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (2026.3.post1)
09:33:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (4.3.2)
09:33:20 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.33.2.dev0) (26.3)
09:33:20 Collecting importlib-resources (from omero-web==5.33.2.dev0)
09:33:20 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
09:33:20 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.2.dev0)
09:33:20 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
09:33:20 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.2.dev0)
09:33:20 Using cached sqlparse-0.6.0-py3-none-any.whl.metadata (6.0 kB)
09:33:20 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.2.dev0) (65.5.1)
09:33:20 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.2.dev0)
09:33:21 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
09:33:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (1.4.4)
09:33:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (1.0.0)
09:33:21 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.4.6)
09:33:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (6.0.3)
09:33:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.6.5)
09:33:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.34.2)
09:33:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.5.1)
09:33:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (3.20)
09:33:21 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (2.8.0)
09:33:21 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.2.dev0) (2026.7.22)
09:33:21 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
09:33:21 Using cached django-5.2.17-py3-none-any.whl (8.3 MB)
09:33:21 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
09:33:21 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
09:33:21 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
09:33:21 Using cached gunicorn-26.2.0-py3-none-any.whl (228 kB)
09:33:21 Using cached sqlparse-0.6.0-py3-none-any.whl (50 kB)
09:33:21 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
09:33:21 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
09:33:21 Using cached wheel-0.48.0-py3-none-any.whl (33 kB)
09:33:21 Building wheels for collected packages: omero-web
09:33:21 Building wheel for omero-web (pyproject.toml): started
09:33:22 Building wheel for omero-web (pyproject.toml): finished with status 'done'
09:33:22 Created wheel for omero-web: filename=omero_web-5.33.2.dev0-py3-none-any.whl size=2821656 sha256=4c991a0d812f337af08f86bc11ede41a4282e49c377fdf7f024cdaa447d21080
09:33:22 Stored in directory: /home/omero/.cache/pip/wheels/fa/8a/56/2d65bd15d81cf391163d964dfe77b84f76dd1b0ce6f0ee9292
09:33:22 Successfully built omero-web
09:33:23 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
09:34:29
09:34:29 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.2.0 importlib-resources-7.1.0 omero-web-5.33.2.dev0 sqlparse-0.6.0 wheel-0.48.0 whitenoise-6.12.0
09:34:30 + omero config set omero.db.name OMERO-server
09:34:38 + omero config set omero.db.host pg
09:34:43 + omero config set omero.db.user postgres
09:34:48 + omero config set omero.data.dir /home/omero/omero-server-data
09:34:53 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
09:34:59 + omero config set omero.db.poolsize 25
09:35:04 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
09:35:09 + omero config set omero.security.trustStorePassword changeit
09:35:14 + omero config set omero.mail.config true
09:35:21 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
09:35:26 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
09:35:31 + omero certificates
09:35:36 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
09:35:36 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
09:35:36 + '[' false = true ']'
09:35:36 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
09:35:36 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
09:35:36 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
09:35:36 2026-09-18 09:35:36,848 [ omego.db] DEBUG dbcommand => upgrade
09:35:36 2026-09-18 09:35:36,848 [ omego.db] DEBUG dbhost => localhost
09:35:36 2026-09-18 09:35:36,848 [ omego.db] DEBUG dbname => OMERO-server
09:35:36 2026-09-18 09:35:36,848 [ omego.db] DEBUG dbpass => omero
09:35:36 2026-09-18 09:35:36,848 [ omego.db] DEBUG dbuser => omero
09:35:36 2026-09-18 09:35:36,848 [ omego.db] DEBUG rootpass => omero
09:35:36 2026-09-18 09:35:36,848 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
09:35:36 2026-09-18 09:35:36,849 [omego.extern] INFO Executing : omero version
09:35:41 OMERO.py version:
09:35:41 OMERO.server version:
09:35:41 5.6.3-680-6e43949dc6-ice36-b81
09:35:41 5.23.1.dev0
09:35:42 2026-09-18 09:35:42,215 [omego.extern] INFO Completed [5.366 s]
09:35:42 2026-09-18 09:35:42,215 [omego.extern] DEBUG Using omero CLI from omero
09:35:42 2026-09-18 09:35:42,215 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
09:35:42 2026-09-18 09:35:42,215 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:35:42 2026-09-18 09:35:42,215 [omego.extern] INFO Executing : omero config get --show-password
09:35:47 2026-09-18 09:35:47,410 [omego.extern] INFO Completed [5.195 s]
09:35:47 2026-09-18 09:35:47,410 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:35:47 2026-09-18 09:35:47,410 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
09:35:47 2026-09-18 09:35:47,595 [omego.extern] INFO Completed [0.184 s]
09:35:47 2026-09-18 09:35:47,595 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
09:35:47 2026-09-18 09:35:47,595 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
09:35:47
09:35:47 2026-09-18 09:35:47,595 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:35:47 2026-09-18 09:35:47,595 [omego.extern] INFO Executing : omero config get --show-password
09:35:52 2026-09-18 09:35:52,645 [omego.extern] INFO Completed [5.049 s]
09:35:52 2026-09-18 09:35:52,645 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:35:52 2026-09-18 09:35:52,645 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
09:35:52 2026-09-18 09:35:52,684 [omego.extern] INFO Completed [0.037 s]
09:35:52 2026-09-18 09:35:52,684 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n'
09:35:52 2026-09-18 09:35:52,684 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:35:52 2026-09-18 09:35:52,684 [omego.extern] INFO Running [current environment]: omero config get --show-password
09:35:52 2026-09-18 09:35:52,684 [omego.extern] INFO Executing : omero config get --show-password
09:35:57 2026-09-18 09:35:57,398 [omego.extern] INFO Completed [4.714 s]
09:35:57 2026-09-18 09:35:57,398 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
09:35:57 2026-09-18 09:35:57,398 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
09:35:57 2026-09-18 09:35:57,419 [omego.extern] INFO Completed [0.021 s]
09:35:57 2026-09-18 09:35:57,420 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
09:35:57 2026-09-18 09:35:57,420 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
09:35:57 2026-09-18 09:35:57,487 [ omego.db] INFO Database is already at OMERO5.4__0
09:35:57 + export LANG=en_US.UTF-8
09:35:57 + LANG=en_US.UTF-8
09:35:57 + export LANGUAGE=en_US:en
09:35:57 + LANGUAGE=en_US:en
09:35:57 + export LC_ALL=en_US.UTF-8
09:35:57 + LC_ALL=en_US.UTF-8
09:35:57 + BUILD_ID=DONT_KILL_ME
09:35:57 + omero admin start
09:36:10 No descriptor given. Using etc/grid/default.xml
09:36:31 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
09:36:31 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
09:36:31 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
09:36:31 Waiting on startup. Use CTRL-C to exit
09:36:31 + omero admin waitup
09:36:37 Waiting on startup. Use CTRL-C to exit
09:36:37 + omero admin diagnostics
09:36:43
09:36:43 ================================================================================
09:36:43 OMERO Diagnostics (admin)
09:36:43 ================================================================================
09:36:43
09:36:43 Commands: java -version 21.0.12 (/usr/bin/java)
09:36:43 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
09:36:43 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
09:36:43 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
09:36:43 Commands: psql --version 16.14 (/usr/bin/psql)
09:36:43 Commands: openssl version 3.5.527 (/usr/bin/openssl)
09:36:43
09:36:43 Component: OMERO.py 5.23.1.dev0
09:36:43 Component: OMERO.server 5.6.3-680-6e43949dc6-ice36-b81
09:36:43
09:36:43 Server: icegridnode running
09:36:43 Server: Blitz-0 active (pid = 11833, enabled)
09:36:43 Server: Indexer-0 active (pid = 11851, enabled)
09:36:43 Server: OMERO.Glacier2 active (pid = 11872, enabled)
09:36:43 Server: OMERO.IceStorm active (pid = 11883, enabled)
09:36:43 Server: Processor-0 active (pid = 11856, enabled)
09:36:43 Server: Tables-0 active (pid = 11876, enabled)
09:36:43
09:36:43 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
09:36:43 Log files: Blitz-0.log 32.3 KB errors=0 warnings=1
09:36:43 Log files: DropBox.log n/a
09:36:43 Log files: FileServer.log n/a
09:36:43 Log files: Indexer-0.log 2.6 KB
09:36:43 Log files: MonitorServer.log n/a
09:36:43 Log files: Processor-0.log 856 B
09:36:43 Log files: Tables-0.log 1.1 KB
09:36:43 Log files: TestDropBox.log n/a
09:36:43 Log files: master.err empty
09:36:43 Log files: master.out 30.7 KB
09:36:43 Log files: Total size 0.07 MB
09:36:43
09:36:43
09:36:43 Environment:OMERO_HOME=(unset)
09:36:43 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:36:43 Environment:OMERO_NODE=(unset)
09:36:43 Environment:OMERO_MASTER=(unset)
09:36:43 Environment:OMERO_USERDIR=(unset)
09:36:43 Environment:OMERO_TMPDIR=(unset)
09:36:43 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:36:43 Environment:PYTHONPATH=(unset)
09:36:43 Environment:ICE_HOME=/opt/ice-3.6.5
09:36:43 Environment:LD_LIBRARY_PATH=(unset)
09:36:43 Environment:DYLD_LIBRARY_PATH=(unset)
09:36:43
09:36:43 OMERO SSL port:4064
09:36:43 OMERO TCP port:4063
09:36:43 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
09:36:43 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
09:36:43
09:36:43 JVM settings: Blitz-${index} -Xmx5007m
09:36:43 JVM settings: Indexer-${index} -Xmx3338m
09:36:43 JVM settings: PixelData-${index} -Xmx5007m
09:36:43 JVM settings: Repository-${index} -Xmx3338m
09:36:43
09:36:43 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
09:36:43 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
09:36:43 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
09:36:43 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
09:36:43 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
09:36:43 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
09:36:43 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
09:36:43 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
09:36:43 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
09:36:43 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
09:36:43 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
09:36:43 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
09:36:43 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
09:36:43 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
09:36:43 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
09:36:43 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
09:36:43 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.7.1 4b6dbee3741150881c01c9929abd8d1961bd9dc8
09:36:44 + deactivate
09:36:44 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:36:44 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:36:44 + export PATH
09:36:44 + unset _OLD_VIRTUAL_PATH
09:36:44 + '[' -n '' ']'
09:36:44 + hash -r
09:36:44 + '[' -n '' ']'
09:36:44 + unset VIRTUAL_ENV
09:36:44 + unset VIRTUAL_ENV_PROMPT
09:36:44 + '[' '!' '' = nondestructive ']'
09:36:44 + unset -f deactivate
09:36:44 Finished: SUCCESS
