Console

01:47:30 Started by upstream project "Trigger" build number 45
01:47:30 originally caused by:
01:47:30  Started by timer
01:47:30 Running as SYSTEM
01:47:30 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:47:30 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8073057980908099851.sh
01:47:30 + source /home/settings.env
01:47:30 ++ OMERO_DB_HOST=pg
01:47:30 ++ OMERO_DB_USER=postgres
01:47:30 ++ OMERO_DB_PASS=
01:47:30 ++ OMERO_ROOT_PASS=omero
01:47:30 ++ OMERO_DATA_DIR=/OMERO
01:47:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:47:30 + OMERO_DB_NAME=OMERO-server
01:47:30 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:47:30 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:47:30 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:47:30 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:47:30 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:47:30 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:47:30 ++ deactivate nondestructive
01:47:30 ++ '[' -n '' ']'
01:47:30 ++ '[' -n '' ']'
01:47:30 ++ hash -r
01:47:30 ++ '[' -n '' ']'
01:47:30 ++ unset VIRTUAL_ENV
01:47:30 ++ unset VIRTUAL_ENV_PROMPT
01:47:30 ++ '[' '!' nondestructive = nondestructive ']'
01:47:30 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:47:30 ++ export VIRTUAL_ENV
01:47:30 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:47:30 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:47:30 ++ export PATH
01:47:30 ++ '[' -n '' ']'
01:47:30 ++ '[' -z '' ']'
01:47:30 ++ _OLD_VIRTUAL_PS1=
01:47:30 ++ PS1='(.venv3) '
01:47:30 ++ export PS1
01:47:30 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:47:30 ++ export VIRTUAL_ENV_PROMPT
01:47:30 ++ hash -r
01:47:30 + omero admin stop
01:48:03 Server not running
01:48:03 + echo not running
01:48:03 not running
01:48:03 + sleep 5
01:48:08 + deactivate
01:48:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:48:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:48:08 + export PATH
01:48:08 + unset _OLD_VIRTUAL_PATH
01:48:08 + '[' -n '' ']'
01:48:08 + hash -r
01:48:08 + '[' -n '' ']'
01:48:08 + unset VIRTUAL_ENV
01:48:08 + unset VIRTUAL_ENV_PROMPT
01:48:08 + '[' '!' '' = nondestructive ']'
01:48:08 + unset -f deactivate
01:48:08 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:50:58 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
01:51:18 + '[' false = true ']'
01:51:18 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:51:18 Skipping PURGE_DATA:CleanDbAndRepo
01:51:18 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:51:25 Copied 1 artifact from "OMERO-build" build number 36
01:51:26 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 30
01:51:26 Copied 2 artifacts from "OMERO-build-build" build number 42
01:51:26 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11161395841497051017.sh
01:51:26 + source /home/settings.env
01:51:26 ++ OMERO_DB_HOST=pg
01:51:26 ++ OMERO_DB_USER=postgres
01:51:26 ++ OMERO_DB_PASS=
01:51:26 ++ OMERO_ROOT_PASS=omero
01:51:26 ++ OMERO_DATA_DIR=/OMERO
01:51:26 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:51:26 + OMERO_DB_NAME=OMERO-server
01:51:26 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:51:26 + mkdir -p /home/omero/omero-server-data
01:51:26 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:51:26 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:51:26 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:51:26 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:51:26 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:51:26 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:51:26 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:51:26 ++ ls OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:51:26 + ZIP=OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:51:26 + '[' '!' -z '' ']'
01:51:26 + DIST=OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36
01:51:26 + unzip OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:51:26 Archive:  OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/blitz/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/grid/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/profiles/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/error/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/janelia/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/matplotlib/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/ncsa_paledit/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/seaborn/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/luts/wcif/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/analysis_scripts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/annotation_scripts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/export_scripts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/figure_scripts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/import_scripts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/scripts/omero/util_scripts/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/server/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/share/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/share/licenses/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/misc/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__1/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__10/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__11/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__2/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__3/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__4/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__5/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__6/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__7/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__8/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__9/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__4/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__5/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__6/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__7/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.1__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/t/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.3__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.4__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__1/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__2/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__3/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/var/
01:51:26    creating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/var/tmp/
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/LICENSE.txt  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/backup.cfg  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/blitz/mail-senders.example  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/blitz/mail-server.example  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/build.properties  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/env.bat  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/env.sh  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/hibernate.properties  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/ice.config  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback-cli.xml  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback-indexing-cli.xml  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback-indexing.xml  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/logback.xml  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/mime.types  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/node1.cfg  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/node2.cfg  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/omero.properties  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/profiles/psql  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/rollover.cfg  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/Windows.cfg  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/error/maintainance.html  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/README  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/default.xml  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/templates.xml  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/grid/windefault.xml  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/ice.config  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/internal.cfg  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/master.cfg  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/templates/robot.template  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/etc/testdropbox.config  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/history.rst  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/OMEZarrReader.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/accessors-smart.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/activation.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aggdesigner-algorithm.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aircompressor.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/antlr.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aopalliance.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/apiguardian-api.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/asm.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/avatica-core.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/avatica-metrics.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aws-java-sdk-core.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aws-java-sdk-kms.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/aws-java-sdk-s3.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/base.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-anim.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-awt-util.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-bridge.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-codec.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-constants.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-css.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-dom.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-ext.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-gvt.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-i18n.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-parser.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-script.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-shared-resources.jar  
01:51:27   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-svg-dom.jar  
01:51:28   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/lib/client/batik-svggen.jar  
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01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__6/OMERO3A__5.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__7/OMERO3A__6.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__8/OMERO3A__6.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3A__9/OMERO3A__8.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__4/OMERO3__1.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__5/OMERO3__4.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__6/OMERO3__5.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO3__7/OMERO3__6.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.1__0/OMERO4__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO4__0/OMERO3A__11.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
01:51:40   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/psql-footer.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/psql-header.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/schema.sql  
01:51:41   inflating: OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36/sql/psql/OMERO5.4__0/views.sql  
01:51:41 + rm -f OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36.zip
01:51:41 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-634-4b8463ab5a-ice36-b36 /home/omero/workspace/OMERO-server/OMERO.server
01:51:41 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:51:41 ++ deactivate nondestructive
01:51:41 ++ '[' -n '' ']'
01:51:41 ++ '[' -n '' ']'
01:51:41 ++ hash -r
01:51:41 ++ '[' -n '' ']'
01:51:41 ++ unset VIRTUAL_ENV
01:51:41 ++ unset VIRTUAL_ENV_PROMPT
01:51:41 ++ '[' '!' nondestructive = nondestructive ']'
01:51:41 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:51:41 ++ export VIRTUAL_ENV
01:51:41 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:51:41 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:51:41 ++ export PATH
01:51:41 ++ '[' -n '' ']'
01:51:41 ++ '[' -z '' ']'
01:51:41 ++ _OLD_VIRTUAL_PS1=
01:51:41 ++ PS1='(.venv3) '
01:51:41 ++ export PS1
01:51:41 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:51:41 ++ export VIRTUAL_ENV_PROMPT
01:51:41 ++ hash -r
01:51:41 + pip install -U pip
01:51:42 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
01:51:42 Collecting pip
01:51:42   Downloading pip-26.2.1-py3-none-any.whl (1.8 MB)
01:51:43      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 8.3 MB/s eta 0:00:00
01:51:43 Installing collected packages: pip
01:51:43   Attempting uninstall: pip
01:51:43     Found existing installation: pip 22.3.1
01:51:44     Uninstalling pip-22.3.1:
01:51:44       Successfully uninstalled pip-22.3.1
01:51:58 Successfully installed pip-26.2.1
01:51:58 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:51:59 Collecting zeroc-ice==3.6.5
01:51:59   Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:52:02      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s  0:00:02
01:52:02 Installing collected packages: zeroc-ice
01:52:06 Successfully installed zeroc-ice-3.6.5
01:52:06 + pip install markdown
01:52:07 Collecting markdown
01:52:07   Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB)
01:52:07 Using cached markdown-3.10.3-py3-none-any.whl (110 kB)
01:52:07 Installing collected packages: markdown
01:52:08 Successfully installed markdown-3.10.3
01:52:08 + pip install reportlab
01:52:09 Collecting reportlab
01:52:09   Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
01:52:09 Collecting pillow>=9.0.0 (from reportlab)
01:52:09   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:52:10 Collecting charset-normalizer (from reportlab)
01:52:10   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
01:52:10 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB)
01:52:10 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:52:10 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:52:10 Installing collected packages: pillow, charset-normalizer, reportlab
01:52:19 
01:52:19 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0
01:52:19 + pip install omego
01:52:20 Collecting omego
01:52:20   Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
01:52:20 Collecting future (from omego)
01:52:20   Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
01:52:20 Collecting yaclifw>=0.1.1 (from omego)
01:52:20   Using cached yaclifw-0.2.0-py3-none-any.whl
01:52:20 Collecting six (from yaclifw>=0.1.1->omego)
01:52:20   Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:52:20 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
01:52:20 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:52:20 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:52:20 Installing collected packages: six, future, yaclifw, omego
01:52:26 
01:52:26 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
01:52:26 + pip install tables
01:52:27 Collecting tables
01:52:27   Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
01:52:27 Collecting numpy>=1.20.0 (from tables)
01:52:28   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
01:52:28 Collecting numexpr>=2.6.2 (from tables)
01:52:28   Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
01:52:28 Collecting packaging (from tables)
01:52:28   Downloading packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
01:52:28 Collecting py-cpuinfo (from tables)
01:52:28   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:52:29 Collecting blosc2>=2.3.0 (from tables)
01:52:29   Downloading blosc2-4.10.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
01:52:29 Collecting ndindex (from blosc2>=2.3.0->tables)
01:52:29   Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
01:52:29 Collecting msgpack (from blosc2>=2.3.0->tables)
01:52:29   Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
01:52:29 Collecting pydantic (from blosc2>=2.3.0->tables)
01:52:29   Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
01:52:30 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
01:52:30   Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
01:52:30 Collecting rich (from blosc2>=2.3.0->tables)
01:52:30   Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
01:52:30 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
01:52:30   Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
01:52:30 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:30   Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
01:52:30 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:30   Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
01:52:30 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:30   Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
01:52:31 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:31   Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
01:52:31 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:31   Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
01:52:31 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
01:52:31   Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
01:52:31 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
01:52:31   Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
01:52:31 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
01:52:31   Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
01:52:31 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
01:52:31   Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
01:52:31 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
01:52:32   Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
01:52:32 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
01:52:32   Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
01:52:32 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
01:52:32   Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
01:52:33 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
01:52:33   Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
01:52:33 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
01:52:33   Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
01:52:33 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
01:52:33   Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
01:52:33 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
01:52:33 Downloading blosc2-4.10.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.4 MB)
01:52:34    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.4/7.4 MB 12.9 MB/s  0:00:00
01:52:34 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
01:52:34 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:52:34 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
01:52:34 Using cached h2-4.4.1-py3-none-any.whl (62 kB)
01:52:34 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
01:52:34 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
01:52:34 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
01:52:34 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
01:52:34 Using cached anyio-4.14.2-py3-none-any.whl (125 kB)
01:52:34 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:52:34 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
01:52:34 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:52:34 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
01:52:34 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
01:52:34 Downloading packaging-26.3-py3-none-any.whl (129 kB)
01:52:34 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:52:34 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
01:52:34 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
01:52:35 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
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01:52:35 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
01:52:35 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
01:52:35 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
01:52:35 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
01:52:35 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
01:52:35 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
01:53:25 
01:53:25 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.10.0 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0
01:53:25 + pip install jinja2
01:53:26 Collecting jinja2
01:53:26   Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
01:53:26 Collecting MarkupSafe>=2.0 (from jinja2)
01:53:26   Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
01:53:26 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
01:53:26 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
01:53:27 Installing collected packages: MarkupSafe, jinja2
01:53:28 
01:53:28 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
01:53:28 + pip install omero-py
01:53:29 Collecting omero-py
01:53:29   Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
01:53:29 Collecting appdirs (from omero-py)
01:53:29   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:53:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
01:53:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
01:53:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
01:53:29 Collecting PyYAML (from omero-py)
01:53:29   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
01:53:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:53:29 Collecting requests (from omero-py)
01:53:29   Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
01:53:29 Collecting portalocker (from omero-py)
01:53:29   Using cached portalocker-4.1.0-py3-none-any.whl.metadata (11 kB)
01:53:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9)
01:53:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
01:53:29 Collecting urllib3<3,>=1.26 (from requests->omero-py)
01:53:30   Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
01:53:30 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
01:53:30 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:53:30 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:53:30 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:53:30 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:53:30 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:53:30 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:53:30 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
01:53:48 
01:53:49 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 urllib3-2.7.0
01:53:49 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:53:49 Collecting omero-metadata
01:53:49   Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-9noo7sty/omero-metadata_9ff881567c6f4bae9d81e8a4529e348b
01:53:49   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-9noo7sty/omero-metadata_9ff881567c6f4bae9d81e8a4529e348b
01:53:51   Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit e8229f41c873777e23f6a4ea48767fb00a38a437
01:53:51   Installing build dependencies: started
01:53:52   Installing build dependencies: finished with status 'done'
01:53:52   Getting requirements to build wheel: started
01:53:52   Getting requirements to build wheel: finished with status 'done'
01:53:52   Preparing metadata (pyproject.toml): started
01:53:53   Preparing metadata (pyproject.toml): finished with status 'done'
01:53:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0)
01:53:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
01:53:53 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
01:53:53 Collecting pandas (from omero-metadata)
01:53:53   Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
01:53:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:53:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:53:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6)
01:53:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
01:53:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:53:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
01:53:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.1.0)
01:53:53 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
01:53:53 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
01:53:53   Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:53:53 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
01:53:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9)
01:53:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
01:53:53 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
01:53:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
01:53:53 Using cached pandas-3.0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
01:53:54 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:53:54 Building wheels for collected packages: omero-metadata
01:53:54   Building wheel for omero-metadata (pyproject.toml): started
01:53:54   Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:53:54   Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=77e84d3d6a4a377e479e5e296ce2a19c369ce13902c22a5a9a9947fdb37badfe
01:53:54   Stored in directory: /tmp/pip-ephem-wheel-cache-lwt521ju/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
01:53:54 Successfully built omero-metadata
01:53:54 Installing collected packages: python-dateutil, pandas, omero-metadata
01:54:35 
01:54:35 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.5 python-dateutil-2.9.0.post0
01:54:35 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:54:36 Collecting omero-cli-render
01:54:36   Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-kas8vmn0/omero-cli-render_3f546bf8c3814fc2ae10187cf63401dc
01:54:36   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-kas8vmn0/omero-cli-render_3f546bf8c3814fc2ae10187cf63401dc
01:54:37   Running command git checkout -b merge_ci --track origin/merge_ci
01:54:38   Switched to a new branch 'merge_ci'
01:54:38   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:54:38   Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 28213e53b627fd468aba56c93889cfb6ef55207f
01:54:38   Installing build dependencies: started
01:54:39   Installing build dependencies: finished with status 'done'
01:54:39   Getting requirements to build wheel: started
01:54:39   Getting requirements to build wheel: finished with status 'done'
01:54:39   Preparing metadata (pyproject.toml): started
01:54:40   Preparing metadata (pyproject.toml): finished with status 'done'
01:54:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
01:54:40 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0)
01:54:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:54:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:54:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
01:54:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
01:54:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:54:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
01:54:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.1.0)
01:54:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9)
01:54:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
01:54:40 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
01:54:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
01:54:40 Building wheels for collected packages: omero-cli-render
01:54:40   Building wheel for omero-cli-render (pyproject.toml): started
01:54:40   Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:54:40   Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=5e9de63496958f3c7a4153361b023d08351ce55a3273fea1d7d8e696477b8b8e
01:54:40   Stored in directory: /tmp/pip-ephem-wheel-cache-yoawl3_u/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
01:54:40 Successfully built omero-cli-render
01:54:40 Installing collected packages: omero-cli-render
01:54:40 Successfully installed omero-cli-render-0.8.2.dev0
01:54:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:54:41 Collecting omero-cli-duplicate
01:54:41   Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-halog35k/omero-cli-duplicate_1585624919e94160ba2c40ee8cba1bdb
01:54:41   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-halog35k/omero-cli-duplicate_1585624919e94160ba2c40ee8cba1bdb
01:54:42   Running command git checkout -b merge_ci --track origin/merge_ci
01:54:42   Switched to a new branch 'merge_ci'
01:54:42   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:54:42   Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 821522cd00b37fd2a72328fad3a6b7a99969cddd
01:54:42   Installing build dependencies: started
01:54:44   Installing build dependencies: finished with status 'done'
01:54:44   Getting requirements to build wheel: started
01:54:44   Getting requirements to build wheel: finished with status 'done'
01:54:44   Preparing metadata (pyproject.toml): started
01:54:44   Preparing metadata (pyproject.toml): finished with status 'done'
01:54:44 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
01:54:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:54:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:54:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
01:54:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
01:54:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
01:54:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:54:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
01:54:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.1.0)
01:54:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
01:54:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
01:54:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
01:54:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
01:54:44 Building wheels for collected packages: omero-cli-duplicate
01:54:44   Building wheel for omero-cli-duplicate (pyproject.toml): started
01:54:44   Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:54:44   Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=238cf82e4a908bf8321b461ed260e6d72e1783bdf28260eba373e7c21976e86a
01:54:44   Stored in directory: /tmp/pip-ephem-wheel-cache-f_fmuhxi/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
01:54:44 Successfully built omero-cli-duplicate
01:54:45 Installing collected packages: omero-cli-duplicate
01:54:45 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:54:45 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
01:54:46 Collecting omero-cli-zarr
01:54:46   Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-msrb2ykq/omero-cli-zarr_9a13c6c03066459a84ae4217e465481f
01:54:46   Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-msrb2ykq/omero-cli-zarr_9a13c6c03066459a84ae4217e465481f
01:54:47   Running command git checkout -b merge_ci --track origin/merge_ci
01:54:47   Switched to a new branch 'merge_ci'
01:54:47   branch 'merge_ci' set up to track 'origin/merge_ci'.
01:54:47   Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit bda5b11031ad5a30a98ee841e16b594c8dd411e7
01:54:47   Installing build dependencies: started
01:54:48   Installing build dependencies: finished with status 'done'
01:54:48   Getting requirements to build wheel: started
01:54:48   Getting requirements to build wheel: finished with status 'done'
01:54:48   Installing backend dependencies: started
01:54:50   Installing backend dependencies: finished with status 'done'
01:54:50   Preparing metadata (pyproject.toml): started
01:54:50   Preparing metadata (pyproject.toml): finished with status 'done'
01:54:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
01:54:51 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
01:54:51   Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
01:54:51 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
01:54:51 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:51   Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB)
01:54:51 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:51   Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
01:54:51 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:51   Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB)
01:54:52 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:52   Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
01:54:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
01:54:52 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:53 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:53 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:53 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:53 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:53   Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
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01:54:53   Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB)
01:54:53 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:53   Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
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01:54:55 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:55 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:55   Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
01:54:55 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:55   Using cached aiobotocore-3.9.0-py3-none-any.whl.metadata (30 kB)
01:54:55 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:55   Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
01:54:55 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:55   Using cached botocore-1.43.56-py3-none-any.whl.metadata (5.6 kB)
01:54:55 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:55   Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
01:54:56 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:56   Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
01:54:56 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
01:54:56 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:56   Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
01:54:56 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:56   Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
01:54:56 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:56   Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
01:54:56 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:56   Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
01:54:57 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:57   Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
01:54:57 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:57   Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB)
01:54:57 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:57   Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB)
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01:54:57 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:58 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:58   Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
01:54:58 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:58   Using cached imageio-2.37.4-py3-none-any.whl.metadata (9.6 kB)
01:54:58 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:58 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:58 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
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01:54:58 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
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01:54:59 Using cached click-8.4.2-py3-none-any.whl (119 kB)
01:54:59 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
01:54:59 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB)
01:54:59 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
01:54:59 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
01:54:59 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
01:54:59 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
01:54:59 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
01:54:59 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
01:54:59 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB)
01:54:59 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB)
01:54:59 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
01:54:59 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
01:54:59 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB)
01:54:59 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
01:54:59 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
01:54:59 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB)
01:54:59 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB)
01:54:59 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
01:54:59 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
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01:54:59 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
01:54:59 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
01:55:00 Using cached imageio-2.37.4-py3-none-any.whl (318 kB)
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01:55:00 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
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01:55:00 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
01:55:00 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
01:55:00 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
01:55:00 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
01:55:00 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
01:55:00 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
01:55:00 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
01:55:00 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
01:55:00 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
01:55:00 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
01:55:01 Building wheels for collected packages: omero-cli-zarr
01:55:01   Building wheel for omero-cli-zarr (pyproject.toml): started
01:55:01   Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
01:55:01   Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+gbda5b11-py3-none-any.whl size=38400 sha256=30f90f34f690f6b501df3e8ce85b759cfab5ece83bba1cd032258c7abd6eed28
01:55:01   Stored in directory: /tmp/pip-ephem-wheel-cache-7_c7vo2o/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
01:55:01 Successfully built omero-cli-zarr
01:55:01 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
01:55:37   Attempting uninstall: pydantic-core
01:55:37     Found existing installation: pydantic_core 2.46.4
01:55:37     Uninstalling pydantic_core-2.46.4:
01:55:37       Successfully uninstalled pydantic_core-2.46.4
01:56:11   Attempting uninstall: pydantic
01:56:11     Found existing installation: pydantic 2.13.4
01:56:11     Uninstalling pydantic-2.13.4:
01:56:11       Successfully uninstalled pydantic-2.13.4
01:56:51 
01:56:52 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+gbda5b11 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0
01:56:52 + pip install omero-certificates
01:56:53 Collecting omero-certificates
01:56:53   Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
01:56:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0)
01:56:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:56:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:56:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
01:56:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
01:56:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
01:56:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:56:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
01:56:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.1.0)
01:56:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
01:56:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
01:56:53 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
01:56:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
01:56:53 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
01:56:53 Installing collected packages: omero-certificates
01:56:54 Successfully installed omero-certificates-0.4.0
01:56:54 + for x in *.tar.gz
01:56:54 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:56:54 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:56:54   Installing build dependencies: started
01:56:56   Installing build dependencies: finished with status 'done'
01:56:56   Getting requirements to build wheel: started
01:56:56   Getting requirements to build wheel: finished with status 'done'
01:56:56   Preparing metadata (pyproject.toml): started
01:56:56   Preparing metadata (pyproject.toml): finished with status 'done'
01:56:56 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
01:56:56 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:56:56 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:56:56 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
01:56:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
01:56:56 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
01:56:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:56:56 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
01:56:56 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.1.0)
01:56:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
01:56:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
01:56:56 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
01:56:56 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
01:56:56 Building wheels for collected packages: omero-dropbox
01:56:56   Building wheel for omero-dropbox (pyproject.toml): started
01:56:57   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:56:57   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=4720f9e062daa77429247a9c936994ec802eae0724afd3ffd47c91fcdfb2e8ad
01:56:57   Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
01:56:57 Successfully built omero-dropbox
01:56:57 Installing collected packages: omero-dropbox
01:56:57 Successfully installed omero-dropbox-5.7.1.dev0
01:56:58 + for x in *.tar.gz
01:56:58 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
01:56:58 Processing ./omero_marshal-0.9.2.dev0.tar.gz
01:56:58   Installing build dependencies: started
01:56:59   Installing build dependencies: finished with status 'done'
01:56:59   Getting requirements to build wheel: started
01:57:00   Getting requirements to build wheel: finished with status 'done'
01:57:00   Preparing metadata (pyproject.toml): started
01:57:00   Preparing metadata (pyproject.toml): finished with status 'done'
01:57:00 Building wheels for collected packages: omero_marshal
01:57:00   Building wheel for omero_marshal (pyproject.toml): started
01:57:00   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:57:00   Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=f1cf73392e0de9e87ef2df03722475470c95959ab333d6e7bb1a2e1ef5917772
01:57:00   Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
01:57:01 Successfully built omero_marshal
01:57:01 Installing collected packages: omero_marshal
01:57:03 Successfully installed omero_marshal-0.9.2.dev0
01:57:03 + for x in *.tar.gz
01:57:03 + pip install -U omero_py-5.23.1.dev0.tar.gz
01:57:04 Processing ./omero_py-5.23.1.dev0.tar.gz
01:57:04   Installing build dependencies: started
01:57:05   Installing build dependencies: finished with status 'done'
01:57:05   Getting requirements to build wheel: started
01:57:05   Getting requirements to build wheel: finished with status 'done'
01:57:05   Preparing metadata (pyproject.toml): started
01:57:06   Preparing metadata (pyproject.toml): finished with status 'done'
01:57:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
01:57:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
01:57:06 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
01:57:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
01:57:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
01:57:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
01:57:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
01:57:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.1.0)
01:57:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.4.9)
01:57:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18)
01:57:06 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0)
01:57:06 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22)
01:57:06 Building wheels for collected packages: omero-py
01:57:06   Building wheel for omero-py (pyproject.toml): started
01:57:07   Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:57:07   Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786710 sha256=696477e17339839080b5afc2f266bfa6d25016573f83d948de4f3b0b25897a21
01:57:07   Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
01:57:07 Successfully built omero-py
01:57:07 Installing collected packages: omero-py
01:57:07   Attempting uninstall: omero-py
01:57:07     Found existing installation: omero-py 5.23.0
01:57:08     Uninstalling omero-py-5.23.0:
01:57:17       Successfully uninstalled omero-py-5.23.0
01:57:33 Successfully installed omero-py-5.23.1.dev0
01:57:33 + for x in *.tar.gz
01:57:33 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
01:57:34 Processing ./omero_scripts-5.10.1.dev0.tar.gz
01:57:34   Installing build dependencies: started
01:57:35   Installing build dependencies: finished with status 'done'
01:57:35   Getting requirements to build wheel: started
01:57:35   Getting requirements to build wheel: finished with status 'done'
01:57:35   Preparing metadata (pyproject.toml): started
01:57:36   Preparing metadata (pyproject.toml): finished with status 'done'
01:57:36 Building wheels for collected packages: omero-scripts
01:57:36   Building wheel for omero-scripts (pyproject.toml): started
01:57:36   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:57:36   Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=fa07c35c43031882c09573731b4dbf9e3a068bf39e767b02adfaf5240f2eca19
01:57:36   Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
01:57:36 Successfully built omero-scripts
01:57:36 Installing collected packages: omero-scripts
01:57:37 Successfully installed omero-scripts-5.10.1.dev0
01:57:37 + for x in *.tar.gz
01:57:37 + pip install -U omero_web-5.32.1.dev0.tar.gz
01:57:38 Processing ./omero_web-5.32.1.dev0.tar.gz
01:57:38   Installing build dependencies: started
01:57:40   Installing build dependencies: finished with status 'done'
01:57:40   Getting requirements to build wheel: started
01:57:40   Getting requirements to build wheel: finished with status 'done'
01:57:40   Preparing metadata (pyproject.toml): started
01:57:40   Preparing metadata (pyproject.toml): finished with status 'done'
01:57:40 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0)
01:57:40 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
01:57:40   Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
01:57:41 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
01:57:41   Downloading django-5.2.17-py3-none-any.whl.metadata (4.1 kB)
01:57:41 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
01:57:41   Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
01:57:41 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
01:57:41   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:57:41 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
01:57:41   Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
01:57:41 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
01:57:41   Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
01:57:41 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
01:57:41 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
01:57:42 Collecting pytz (from omero-web==5.32.1.dev0)
01:57:42   Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
01:57:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.1.0)
01:57:42 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.3)
01:57:42 Collecting importlib-resources (from omero-web==5.32.1.dev0)
01:57:42   Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
01:57:42 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
01:57:42   Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
01:57:42 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
01:57:42   Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
01:57:42 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
01:57:42 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
01:57:42   Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
01:57:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
01:57:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
01:57:42 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
01:57:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
01:57:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
01:57:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
01:57:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
01:57:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
01:57:42 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
01:57:42 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22)
01:57:42 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:57:42 Downloading django-5.2.17-py3-none-any.whl (8.3 MB)
01:57:43    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 12.9 MB/s  0:00:00
01:57:43 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
01:57:43 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
01:57:43 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
01:57:43 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
01:57:43 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
01:57:43 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
01:57:43 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
01:57:43 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB)
01:57:43 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
01:57:43 Building wheels for collected packages: omero-web
01:57:43   Building wheel for omero-web (pyproject.toml): started
01:57:45   Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:57:45   Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820229 sha256=be55437bd7f1557d360b26bf773d5d008c6b7102cc35b398547997e8d56dd81b
01:57:45   Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
01:57:45 Successfully built omero-web
01:57:45 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
01:58:55 
01:58:55 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.3.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
01:58:55 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:58:55 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:58:55 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:58:55 --2026-08-05 01:58:55--  https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:58:55 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ...
01:58:55 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
01:58:56 HTTP request sent, awaiting response... 200 OK
01:58:56 Length: 139337 (136K) [text/plain]
01:58:56 Saving to: ‘Figure_To_Pdf.py’
01:58:56 
01:58:56      0K .......... .......... .......... .......... .......... 36% 2.74M 0s
01:58:56     50K .......... .......... .......... .......... .......... 73% 5.37M 0s
01:58:56    100K .......... .......... .......... ......               100% 6.55M=0.03s
01:58:56 
01:58:56 2026-08-05 01:58:56 (4.12 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
01:58:56 
01:58:56 + chmod 755 Figure_To_Pdf.py
01:58:56 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:58:56 + omero config set omero.db.name OMERO-server
01:59:02 + omero config set omero.db.host pg
01:59:07 + omero config set omero.db.user postgres
01:59:12 + omero config set omero.data.dir /home/omero/omero-server-data
01:59:17 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:59:22 + omero config set omero.db.poolsize 25
01:59:27 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:59:32 + omero config set omero.security.trustStorePassword changeit
01:59:37 + omero config set omero.mail.config true
01:59:42 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:59:47 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
01:59:52 + omero certificates
01:59:56 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
01:59:56 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
01:59:56 + '[' false = true ']'
01:59:56 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
01:59:56 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
01:59:56 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
01:59:57 2026-08-05 01:59:57,053 [    omego.db] DEBUG            dbcommand => upgrade
01:59:57 2026-08-05 01:59:57,053 [    omego.db] DEBUG               dbhost => localhost
01:59:57 2026-08-05 01:59:57,053 [    omego.db] DEBUG               dbname => OMERO-server
01:59:57 2026-08-05 01:59:57,053 [    omego.db] DEBUG               dbpass => omero
01:59:57 2026-08-05 01:59:57,053 [    omego.db] DEBUG               dbuser => omero
01:59:57 2026-08-05 01:59:57,053 [    omego.db] DEBUG             rootpass => omero
01:59:57 2026-08-05 01:59:57,053 [    omego.db] DEBUG            serverdir => /home/omero/workspace/OMERO-server/OMERO.server
01:59:57 2026-08-05 01:59:57,054 [omego.extern] INFO  Executing : omero version
02:00:01 OMERO.py version:
02:00:01 OMERO.server version:
02:00:01 5.6.3-634-4b8463ab5a-ice36-b36
02:00:01 5.23.1.dev0
02:00:01 2026-08-05 02:00:01,805 [omego.extern] INFO  Completed [4.751 s]
02:00:01 2026-08-05 02:00:01,805 [omego.extern] DEBUG Using omero CLI from omero
02:00:01 2026-08-05 02:00:01,805 [    omego.db] INFO  DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
02:00:01 2026-08-05 02:00:01,805 [omego.extern] INFO  Running [current environment]: omero config get --show-password
02:00:01 2026-08-05 02:00:01,805 [omego.extern] INFO  Executing : omero config get --show-password
02:00:06 2026-08-05 02:00:06,694 [omego.extern] INFO  Completed [4.889 s]
02:00:06 2026-08-05 02:00:06,694 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
02:00:06 2026-08-05 02:00:06,695 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
02:00:06 2026-08-05 02:00:06,774 [omego.extern] INFO  Completed [0.079 s]
02:00:06 2026-08-05 02:00:06,774 [    omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
02:00:06 2026-08-05 02:00:06,774 [    omego.db] INFO  psql version: psql (PostgreSQL) 16.14
02:00:06 
02:00:06 2026-08-05 02:00:06,774 [omego.extern] INFO  Running [current environment]: omero config get --show-password
02:00:06 2026-08-05 02:00:06,774 [omego.extern] INFO  Executing : omero config get --show-password
02:00:11 2026-08-05 02:00:11,535 [omego.extern] INFO  Completed [4.761 s]
02:00:11 2026-08-05 02:00:11,535 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
02:00:11 2026-08-05 02:00:11,535 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
02:00:11 2026-08-05 02:00:11,611 [omego.extern] INFO  Completed [0.076 s]
02:00:11 2026-08-05 02:00:11,611 [    omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
02:00:11 2026-08-05 02:00:11,611 [    omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
02:00:11 2026-08-05 02:00:11,612 [omego.extern] INFO  Running [current environment]: omero config get --show-password
02:00:11 2026-08-05 02:00:11,612 [omego.extern] INFO  Executing : omero config get --show-password
02:00:17 2026-08-05 02:00:17,155 [omego.extern] INFO  Completed [5.544 s]
02:00:17 2026-08-05 02:00:17,155 [    omego.db] INFO  Failed to lookup parameter omero.db.pass, using omero
02:00:17 2026-08-05 02:00:17,156 [omego.extern] INFO  Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
02:00:17 2026-08-05 02:00:17,719 [omego.extern] INFO  Completed [0.563 s]
02:00:17 2026-08-05 02:00:17,719 [    omego.db] DEBUG stdout: b'OMERO5.4|0\n'
02:00:17 2026-08-05 02:00:17,719 [    omego.db] INFO  Current omero db version: ('OMERO5.4', '0')
02:00:17 2026-08-05 02:00:17,760 [    omego.db] INFO  Database is already at OMERO5.4__0
02:00:17 + export LANG=en_US.UTF-8
02:00:17 + LANG=en_US.UTF-8
02:00:17 + export LANGUAGE=en_US:en
02:00:17 + LANGUAGE=en_US:en
02:00:17 + export LC_ALL=en_US.UTF-8
02:00:17 + LC_ALL=en_US.UTF-8
02:00:17 + BUILD_ID=DONT_KILL_ME
02:00:17 + omero admin start
02:00:28 WARNING: lock files in /home/omero/omero-server-data
02:00:28 ----------------------------------------
02:00:28 /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock
02:00:28 ----------------------------------------
02:00:28 
02:00:28 You may want to stop all server processes and remove
02:00:28 these files manually. Lock files can remain after an
02:00:28 abrupt server outage and are especially frequent on
02:00:28 remotely mounted filesystems like NFS.
02:00:28 
02:00:29 No descriptor given. Using etc/grid/default.xml
02:00:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
02:00:40 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
02:00:40 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
02:00:40 Waiting on startup. Use CTRL-C to exit
02:00:41 + omero admin waitup
02:00:45 Waiting on startup. Use CTRL-C to exit
02:00:46 + omero admin diagnostics
02:00:50 
02:00:50 ================================================================================
02:00:50 OMERO Diagnostics (admin)
02:00:50 ================================================================================
02:00:50         
02:00:50 Commands:   java -version                  21.0.12   (/usr/bin/java)
02:00:50 Commands:   python -V                      3.11.13   (/home/omero/workspace/OMERO-server/.venv3/bin/python)
02:00:50 Commands:   icegridnode --version          3.6.5     (/opt/ice-3.6.5/bin/icegridnode)
02:00:50 Commands:   icegridadmin --version         3.6.5     (/opt/ice-3.6.5/bin/icegridadmin)
02:00:50 Commands:   psql --version                 16.14     (/usr/bin/psql)
02:00:50 Commands:   openssl version                3.5.527   (/usr/bin/openssl)
02:00:50 
02:00:50 Component:  OMERO.py                       5.23.1.dev0
02:00:50 Component:  OMERO.server                   5.6.3-634-4b8463ab5a-ice36-b36
02:00:50 
02:00:50 Server:     icegridnode                    running
02:00:50 Server:     Blitz-0                        active (pid = 3553, enabled)
02:00:50 Server:     Indexer-0                      active (pid = 3590, enabled)
02:00:50 Server:     OMERO.Glacier2                 active (pid = 3581, enabled)
02:00:50 Server:     OMERO.IceStorm                 active (pid = 3589, enabled)
02:00:50 Server:     Processor-0                    activating (enabled)
02:00:50 Server:     Tables-0                       activating (enabled)
02:00:50 
02:00:50 Log dir:    /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
02:00:50 Log files:  Blitz-0.log                    22.7 KB       errors=0    warnings=1   
02:00:50 Log files:  DropBox.log                    n/a
02:00:50 Log files:  FileServer.log                 n/a
02:00:50 Log files:  Indexer-0.log                  2.6 KB       
02:00:50 Log files:  MonitorServer.log              n/a
02:00:50 Log files:  Processor-0.log                592 B        
02:00:50 Log files:  Tables-0.log                   841 B        
02:00:50 Log files:  TestDropBox.log                n/a
02:00:50 Log files:  master.err                     empty
02:00:50 Log files:  master.out                     30.5 KB      
02:00:50 Log files:  Total size                     0.06 MB
02:00:50 
02:00:50 
02:00:50 Environment:OMERO_HOME=(unset)             
02:00:50 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 
02:00:50 Environment:OMERO_NODE=(unset)             
02:00:50 Environment:OMERO_MASTER=(unset)           
02:00:50 Environment:OMERO_USERDIR=(unset)          
02:00:50 Environment:OMERO_TMPDIR=(unset)           
02:00:50 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 
02:00:50 Environment:PYTHONPATH=(unset)             
02:00:50 Environment:ICE_HOME=/opt/ice-3.6.5        
02:00:50 Environment:LD_LIBRARY_PATH=(unset)        
02:00:50 Environment:DYLD_LIBRARY_PATH=(unset)      
02:00:50 
02:00:50 OMERO SSL port:4064                           
02:00:50 OMERO TCP port:4063                           
02:00:50 OMERO data dir:'/home/omero/omero-server-data' Exists? True	Is writable? True
02:00:51 OMERO temp dir:'/home/omero/omero/tmp'        Exists? True	Is writable? True   (Size: 0)
02:00:51 
02:00:51 JVM settings: Blitz-${index}                -Xmx7200m
02:00:51 JVM settings: Indexer-${index}              -Xmx4800m
02:00:51 JVM settings: PixelData-${index}            -Xmx7200m
02:00:51 JVM settings: Repository-${index}           -Xmx4800m
02:00:51 
02:00:51 Jar:        lib/server/formats-api.jar     Bio-Formats API	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
02:00:51 Jar:        lib/server/formats-bsd.jar     BSD Bio-Formats readers and writers	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
02:00:51 Jar:        lib/server/formats-gpl.jar     Bio-Formats library	8.5.0	18 March 2026	877c317e4e396381dc76e56c1539b24947f71dce
02:00:51 Jar:        lib/server/ome-codecs.jar      OME Codecs	1.1.3	26 February 2026	70fd9b72a9834f1af4852c1e5b5676c57a2c360e
02:00:51 Jar:        lib/server/ome-common.jar      OME Common Java	6.2.1	27 February 2026	a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
02:00:51 Jar:        lib/server/ome-jai.jar         OME JAI	0.1.5	30 June 2025	257a1c1410c0103485248d05752a5174262a38b6
02:00:51 Jar:        lib/server/ome-mdbtools.jar    MDB Tools (Java port)	5.3.4	25 June 2025	57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
02:00:51 Jar:        lib/server/ome-poi.jar         OME POI	5.3.11	11 November 2025	a2f3944ac71db9e7e51a6f64ec46beeb60613afb
02:00:51 Jar:        lib/server/ome-xml.jar         OME XML library	6.5.3	22 January 2026	21d1362abd9ce26e13888d2b2d028753d21ac96e
02:00:51 Jar:        lib/server/omero-blitz.jar     jar	5.8.6-SNAPSHOT		
02:00:51 Jar:        lib/server/omero-common.jar    jar	5.7.6-SNAPSHOT		
02:00:51 Jar:        lib/server/omero-gateway.jar   jar	5.11.1-SNAPSHOT		
02:00:51 Jar:        lib/server/omero-model.jar     jar	5.7.6-SNAPSHOT		
02:00:51 Jar:        lib/server/omero-renderer.jar  jar	5.6.6-SNAPSHOT		
02:00:51 Jar:        lib/server/omero-romio.jar     jar	5.8.6-SNAPSHOT		
02:00:51 Jar:        lib/server/omero-server.jar    jar	5.7.6-SNAPSHOT		
02:00:51 + deactivate
02:00:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
02:00:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:00:51 + export PATH
02:00:51 + unset _OLD_VIRTUAL_PATH
02:00:51 + '[' -n '' ']'
02:00:51 + hash -r
02:00:51 + '[' -n '' ']'
02:00:51 + unset VIRTUAL_ENV
02:00:51 + unset VIRTUAL_ENV_PROMPT
02:00:51 + '[' '!' '' = nondestructive ']'
02:00:51 + unset -f deactivate
02:00:51 Finished: SUCCESS