Skipping 219 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-12-05 00:35:52,021 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-12-05 00:35:52,021 [ scc.git] DEBUG requirements.txt | 2 +-
2025-12-05 00:35:52,021 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-12-05 00:35:52,021 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-12-05 00:35:52,021 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-12-05 00:35:52,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:35:52,226 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-05 00:35:52,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:35:52,232 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-12-05 00:35:52,240 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:35:52,242 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:35:52,242 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:35:52,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:35:52,637 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-05 00:35:52,641 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:35:52,643 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-05 00:35:52,650 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2025-12-05 00:35:52,650 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2025-12-05 00:35:52,651 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-05 00:35:52,651 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-05 00:35:52,653 [ scc.git] DEBUG Calling 'git reset --hard 1e5edfcd1d726e55a230f90fb2834fc8411e850b'
2025-12-05 00:35:52,657 [ scc.git] DEBUG HEAD is now at 1e5edfc merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2025-12-05 00:35:53,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:35:53,033 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2025-12-05 00:35:53,035 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2025-12-05 00:35:53,038 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#593](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2025-12-05 00:35:53,040 [ scc.config] DEBUG Found github.token
2025-12-05 00:35:53,040 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2025-12-05 00:35:53,040 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:35:53,078 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:35:53,078 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:35:53,080 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:35:53,116 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:35:53,120 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c526ed0> has no local changes
2025-12-05 00:35:53,120 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:35:53,125 [ scc.git] DEBUG [detached HEAD a7a3fec] merge master -Dorg -Ssuccess-only
2025-12-05 00:35:53,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:35:53,125 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:35:53,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-12-05 00:35:54,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-12-05 00:35:54,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-12-05 00:35:55,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-05 00:35:55,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:35:56,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-12-05 00:35:56,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:35:56,441 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-05 00:35:56,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-12-05 00:35:57,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-12-05 00:35:57,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-05 00:35:58,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:35:58,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-12-05 00:35:59,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:35:59,326 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-05 00:35:59,326 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:35:59,326 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-05 00:35:59,326 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:35:59,326 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:35:59,329 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:35:59,331 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:35:59,331 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:35:59,334 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:35:59,340 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-12-05 00:36:00,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-12-05 00:36:00,220 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-12-05 00:36:00,500 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-05 00:36:00,500 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-12-05 00:36:00,504 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-12-05 00:36:00,765 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-12-05 00:36:00,766 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-12-05 00:36:00,769 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:00,769 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:00,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:00,771 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-05 00:36:00,775 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:00,777 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-05 00:36:00,788 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-12-05 00:36:00,789 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-12-05 00:36:00,789 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-05 00:36:00,789 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-05 00:36:00,789 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-05 00:36:00,789 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-05 00:36:00,791 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-05 00:36:00,795 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-05 00:36:01,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:01,106 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-12-05 00:36:01,109 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-05 00:36:01,112 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#593](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-12-05 00:36:01,114 [ scc.config] DEBUG Found github.token
2025-12-05 00:36:01,114 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-12-05 00:36:01,114 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-05 00:36:01,118 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:01,120 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-05 00:36:01,133 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-12-05 00:36:01,133 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-12-05 00:36:01,133 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-12-05 00:36:01,133 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-05 00:36:01,133 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-05 00:36:01,136 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-05 00:36:01,141 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-12-05 00:36:01,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:01,497 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-12-05 00:36:01,501 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-12-05 00:36:01,503 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#593](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-12-05 00:36:01,505 [ scc.config] DEBUG Found github.token
2025-12-05 00:36:01,506 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-12-05 00:36:01,506 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:01,543 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:01,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:01,545 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:01,582 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:01,586 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c4ee450> has no local changes
2025-12-05 00:36:01,586 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:01,592 [ scc.git] DEBUG [detached HEAD e37fe75] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:01,592 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:01,592 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:02,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-12-05 00:36:02,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-12-05 00:36:03,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-05 00:36:03,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:04,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:04,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-12-05 00:36:05,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:05,277 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-05 00:36:05,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-12-05 00:36:05,754 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:36:06,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-05 00:36:06,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:07,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:07,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-12-05 00:36:08,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:08,398 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-05 00:36:08,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-12-05 00:36:08,890 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:36:09,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-05 00:36:09,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:10,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:11,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-12-05 00:36:11,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:11,490 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-05 00:36:11,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-12-05 00:36:12,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-12-05 00:36:12,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-12-05 00:36:13,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-12-05 00:36:13,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-12-05 00:36:14,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-12-05 00:36:14,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-12-05 00:36:14,884 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:36:14,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-05 00:36:14,884 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:14,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:14,886 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:36:14,889 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:36:14,889 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:36:14,891 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:36:14,894 [ scc.git] DEBUG Already up to date.
2025-12-05 00:36:14,894 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-12-05 00:36:15,189 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-05 00:36:15,189 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-12-05 00:36:15,193 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-12-05 00:36:15,460 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-05 00:36:15,460 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-12-05 00:36:15,464 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-12-05 00:36:15,725 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-12-05 00:36:15,725 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-12-05 00:36:15,729 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:15,729 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:15,729 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:15,731 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-05 00:36:15,733 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:15,736 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-12-05 00:36:15,743 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:15,746 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-12-05 00:36:15,746 [ scc.git] DEBUG package.json | 2 +-
2025-12-05 00:36:15,746 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-12-05 00:36:15,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:15,899 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-12-05 00:36:15,901 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:15,903 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-12-05 00:36:15,912 [ scc.git] DEBUG Auto-merging package-lock.json
2025-12-05 00:36:15,912 [ scc.git] DEBUG Auto-merging package.json
2025-12-05 00:36:15,912 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:15,915 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-12-05 00:36:15,915 [ scc.git] DEBUG package.json | 2 +-
2025-12-05 00:36:15,915 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-12-05 00:36:16,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:16,324 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-05 00:36:16,326 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:16,328 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-12-05 00:36:16,335 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:16,337 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:36:16,338 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:36:16,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:16,729 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:16,766 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:16,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:16,769 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:16,804 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:16,807 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77cf11050> has no local changes
2025-12-05 00:36:16,807 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:16,812 [ scc.git] DEBUG [detached HEAD a92a066] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:16,813 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:16,813 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:17,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-12-05 00:36:17,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-12-05 00:36:17,720 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:36:18,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-05 00:36:18,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:19,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:19,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-12-05 00:36:20,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:20,460 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:36:20,460 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:36:20,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-05 00:36:20,460 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:20,460 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:20,463 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:36:20,465 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:36:20,465 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:36:20,467 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:36:20,470 [ scc.git] DEBUG Already up to date.
2025-12-05 00:36:20,470 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-12-05 00:36:20,738 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-12-05 00:36:20,738 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-12-05 00:36:20,742 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:20,742 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:20,742 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:20,744 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-05 00:36:20,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:20,749 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-12-05 00:36:20,755 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:20,758 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:36:20,758 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:36:20,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:20,913 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:20,950 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:20,950 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:20,952 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:20,988 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:20,991 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c541450> has no local changes
2025-12-05 00:36:20,991 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:20,996 [ scc.git] DEBUG [detached HEAD 71bda25] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:20,996 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:20,997 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:21,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-12-05 00:36:21,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-12-05 00:36:21,939 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:36:22,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-05 00:36:23,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:23,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:24,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-05 00:36:24,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:25,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-12-05 00:36:25,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-12-05 00:36:25,464 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:36:25,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-12-05 00:36:26,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-12-05 00:36:27,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-05 00:36:27,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:28,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:28,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-05 00:36:29,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:29,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-12-05 00:36:30,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-12-05 00:36:30,105 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-12-05 00:36:30,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-12-05 00:36:30,604 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:36:30,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-05 00:36:30,605 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:30,605 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:30,607 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:36:30,609 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:36:30,609 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:36:30,612 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:36:30,614 [ scc.git] DEBUG Already up to date.
2025-12-05 00:36:30,615 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-12-05 00:36:30,889 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-05 00:36:30,889 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-12-05 00:36:30,893 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-12-05 00:36:31,155 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-12-05 00:36:31,155 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-12-05 00:36:31,159 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:31,159 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:31,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:31,161 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-05 00:36:31,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:31,166 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-12-05 00:36:31,173 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:31,175 [ scc.git] DEBUG setup.py | 4 +-
2025-12-05 00:36:31,175 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-12-05 00:36:31,175 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-12-05 00:36:31,175 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-12-05 00:36:31,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:31,385 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-12-05 00:36:31,388 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:31,390 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-12-05 00:36:31,397 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:31,399 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:36:31,399 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:36:31,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:31,775 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:31,812 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:31,812 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:31,814 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:31,850 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:31,853 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77cf38510> has no local changes
2025-12-05 00:36:31,853 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:31,858 [ scc.git] DEBUG [detached HEAD 5de7b06] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:31,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:31,858 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:32,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-12-05 00:36:32,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-12-05 00:36:32,990 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:36:33,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-05 00:36:34,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:34,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:35,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-12-05 00:36:35,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:35,457 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:36:35,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-12-05 00:36:36,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-12-05 00:36:37,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-05 00:36:37,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:37,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-12-05 00:36:38,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:38,367 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-05 00:36:38,367 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:36:38,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-05 00:36:38,367 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:38,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:38,370 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:36:38,372 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:36:38,372 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:36:38,375 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:36:38,377 [ scc.git] DEBUG Already up to date.
2025-12-05 00:36:38,377 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-05 00:36:38,665 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-05 00:36:38,665 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-05 00:36:38,669 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-05 00:36:38,927 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-12-05 00:36:38,927 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-05 00:36:38,931 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:38,931 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:38,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:38,933 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-05 00:36:38,936 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:38,938 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-05 00:36:38,946 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG Auto-merging setup.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-12-05 00:36:38,946 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-05 00:36:38,946 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-05 00:36:38,949 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-05 00:36:38,953 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-12-05 00:36:39,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:39,178 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-12-05 00:36:39,180 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-12-05 00:36:39,183 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#593](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/consoleText) for more details.
Possible conflicts:
- Upstream changes
- setup.py
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
--conflicts
2025-12-05 00:36:39,185 [ scc.config] DEBUG Found github.token
2025-12-05 00:36:39,185 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-12-05 00:36:39,185 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-05 00:36:39,188 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:39,189 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-12-05 00:36:39,196 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:39,199 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:36:39,199 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:36:39,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:39,729 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:39,766 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:39,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:39,768 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:39,804 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:39,807 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c541990> has no local changes
2025-12-05 00:36:39,807 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:39,812 [ scc.git] DEBUG [detached HEAD 704264a] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:39,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:39,812 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:40,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-12-05 00:36:40,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/84 HTTP/1.1" 200 None
2025-12-05 00:36:41,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/b0d122c244964cae2668a01b221e1ded7c2171c6 HTTP/1.1" 200 None
2025-12-05 00:36:41,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/b0d122c244964cae2668a01b221e1ded7c2171c6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:42,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/b0d122c244964cae2668a01b221e1ded7c2171c6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:42,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/b0d122c244964cae2668a01b221e1ded7c2171c6 HTTP/1.1" 200 None
2025-12-05 00:36:43,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/b0d122c244964cae2668a01b221e1ded7c2171c6?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:43,159 [ scc.repo] DEBUG - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2025-12-05 00:36:43,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-12-05 00:36:44,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-12-05 00:36:44,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2025-12-05 00:36:45,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-12-05 00:36:45,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:46,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:46,134 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:36:46,134 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-05 00:36:46,134 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:46,134 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:46,137 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:36:46,139 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:36:46,139 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:36:46,141 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:36:46,148 [ scc.git] DEBUG Updating cda3ec6..14c1231
2025-12-05 00:36:46,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2025-12-05 00:36:47,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2025-12-05 00:36:47,500 [ scc.git] DEBUG Calling 'git fetch origin pull/84/head'
2025-12-05 00:36:47,897 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-12-05 00:36:47,897 [ scc.git] DEBUG * branch refs/pull/84/head -> FETCH_HEAD
2025-12-05 00:36:47,899 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:47,899 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:47,899 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:47,902 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b0d122c244964cae2668a01b221e1ded7c2171c6'
2025-12-05 00:36:47,904 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:47,906 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 84 (Remove use of OMERO_SERVER_PORT) b0d122c244964cae2668a01b221e1ded7c2171c6'
2025-12-05 00:36:47,913 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:47,915 [ scc.git] DEBUG README.md | 4 ++--
2025-12-05 00:36:47,915 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-)
2025-12-05 00:36:48,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:48,060 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:48,097 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:48,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:48,099 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:48,134 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:48,137 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77cee43d0> has no local changes
2025-12-05 00:36:48,137 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..14c1231
Previously merged:
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:48,142 [ scc.git] DEBUG [detached HEAD 8731da0] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:48,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:48,143 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:48,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-12-05 00:36:49,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-12-05 00:36:49,044 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:36:49,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-05 00:36:50,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:50,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:51,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-12-05 00:36:51,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:51,586 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:36:51,587 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:36:51,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-05 00:36:51,587 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:51,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:51,589 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:36:51,591 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:36:51,591 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:36:51,593 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:36:51,596 [ scc.git] DEBUG Already up to date.
2025-12-05 00:36:51,596 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-12-05 00:36:51,862 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-12-05 00:36:51,863 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-12-05 00:36:51,866 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:51,866 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:51,866 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:51,868 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-05 00:36:51,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:51,872 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-12-05 00:36:51,879 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:51,882 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:36:51,882 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:36:52,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:52,016 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:52,054 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:52,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:52,056 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:52,091 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:52,094 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c590bd0> has no local changes
2025-12-05 00:36:52,094 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:52,100 [ scc.git] DEBUG [detached HEAD d54c57f] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:52,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:52,100 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:52,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-12-05 00:36:53,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-12-05 00:36:53,082 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:36:53,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-05 00:36:54,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:54,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:36:55,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-12-05 00:36:55,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:36:55,616 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:36:55,616 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:36:55,616 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-05 00:36:55,616 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:55,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:55,618 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:36:55,621 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:36:55,621 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:36:55,623 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:36:55,630 [ scc.git] DEBUG Updating deab817..160d894
2025-12-05 00:36:56,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-12-05 00:36:56,342 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-12-05 00:36:56,613 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-12-05 00:36:56,613 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-12-05 00:36:56,617 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:36:56,617 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:56,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:56,619 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-05 00:36:56,622 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:56,624 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-12-05 00:36:56,631 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:36:56,633 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:36:56,633 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:36:56,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:36:56,782 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:36:56,818 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:36:56,818 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:36:56,820 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:36:56,855 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:36:56,858 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c58a050> has no local changes
2025-12-05 00:36:56,858 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:36:56,863 [ scc.git] DEBUG [detached HEAD f4b98bf] merge master -Dorg -Ssuccess-only
2025-12-05 00:36:56,863 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:36:56,864 [ scc.git] INFO Overriding base-branch from master to main
2025-12-05 00:36:56,864 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:36:57,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-12-05 00:36:57,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-12-05 00:36:58,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-12-05 00:36:58,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-05 00:36:59,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:36:59,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:37:00,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-12-05 00:37:00,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:37:00,656 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-12-05 00:37:01,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-12-05 00:37:01,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-12-05 00:37:02,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-12-05 00:37:02,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-05 00:37:03,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:37:03,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-12-05 00:37:04,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:37:04,082 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-05 00:37:04,082 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:37:04,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-05 00:37:04,082 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:04,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:04,085 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-12-05 00:37:04,087 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:37:04,087 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-12-05 00:37:04,090 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-12-05 00:37:04,097 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2025-12-05 00:37:04,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2025-12-05 00:37:05,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-12-05 00:37:05,470 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-12-05 00:37:05,733 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-05 00:37:05,734 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-12-05 00:37:05,738 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-12-05 00:37:05,993 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-12-05 00:37:05,993 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-12-05 00:37:05,996 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:37:05,996 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:05,996 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:05,999 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-05 00:37:06,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:06,003 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-05 00:37:06,011 [ scc.git] DEBUG Auto-merging README.rst
2025-12-05 00:37:06,011 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-12-05 00:37:06,011 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-12-05 00:37:06,011 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-05 00:37:06,011 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-05 00:37:06,011 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-05 00:37:06,013 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-05 00:37:06,017 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2025-12-05 00:37:06,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:06,176 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-12-05 00:37:06,178 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2025-12-05 00:37:06,181 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#593](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-12-05 00:37:06,183 [ scc.config] DEBUG Found github.token
2025-12-05 00:37:06,183 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-12-05 00:37:06,183 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-05 00:37:06,186 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:06,188 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-12-05 00:37:06,195 [ scc.git] DEBUG Auto-merging README.rst
2025-12-05 00:37:06,195 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-12-05 00:37:06,196 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:37:06,199 [ scc.git] DEBUG README.rst | 3 +
2025-12-05 00:37:06,199 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-12-05 00:37:06,199 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-12-05 00:37:06,199 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-12-05 00:37:06,199 [ scc.git] DEBUG setup.py | 5 +-
2025-12-05 00:37:06,200 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-12-05 00:37:06,200 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-12-05 00:37:06,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:06,599 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:37:06,638 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:06,638 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:06,640 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:37:06,676 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:37:06,679 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77cf26e10> has no local changes
2025-12-05 00:37:06,679 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:37:06,685 [ scc.git] DEBUG [detached HEAD 583524d] merge master -Dorg -Ssuccess-only
2025-12-05 00:37:06,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:06,686 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:37:07,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-12-05 00:37:07,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-12-05 00:37:07,612 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:37:08,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-05 00:37:08,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:37:09,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:37:09,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-12-05 00:37:10,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:37:10,174 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:10,174 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:37:10,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-05 00:37:10,175 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:10,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:10,177 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:37:10,179 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:37:10,179 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:37:10,182 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:37:10,185 [ scc.git] DEBUG Already up to date.
2025-12-05 00:37:10,185 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-12-05 00:37:10,456 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-12-05 00:37:10,456 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-12-05 00:37:10,460 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:37:10,460 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:10,460 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:10,463 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-05 00:37:10,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:10,468 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-12-05 00:37:10,475 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:37:10,478 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:37:10,478 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:37:10,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:10,621 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:37:10,658 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:10,658 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:10,660 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:37:10,697 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:37:10,699 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c59cc10> has no local changes
2025-12-05 00:37:10,699 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:37:10,705 [ scc.git] DEBUG [detached HEAD aced51d] merge master -Dorg -Ssuccess-only
2025-12-05 00:37:10,705 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:10,705 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:37:11,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-12-05 00:37:11,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-12-05 00:37:11,596 [ scc.repo] DEBUG # ... Include label: dependencies
2025-12-05 00:37:12,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-05 00:37:12,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:37:13,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:37:13,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-12-05 00:37:14,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:37:14,263 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:14,263 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:37:14,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-05 00:37:14,263 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:14,263 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:14,265 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:37:14,268 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:37:14,268 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:37:14,270 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:37:14,273 [ scc.git] DEBUG Already up to date.
2025-12-05 00:37:14,273 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-12-05 00:37:14,560 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-12-05 00:37:14,560 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-12-05 00:37:14,563 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:37:14,564 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:14,564 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:14,566 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-05 00:37:14,568 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:14,570 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-12-05 00:37:14,577 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:37:14,580 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-12-05 00:37:14,580 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-12-05 00:37:14,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:14,735 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:37:14,773 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:14,773 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:14,775 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:37:14,812 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:37:14,815 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c5cff90> has no local changes
2025-12-05 00:37:14,815 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:37:14,820 [ scc.git] DEBUG [detached HEAD 8fb9061] merge master -Dorg -Ssuccess-only
2025-12-05 00:37:14,821 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:14,821 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:37:15,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-12-05 00:37:15,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-12-05 00:37:16,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-12-05 00:37:16,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-12-05 00:37:17,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:37:17,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-12-05 00:37:18,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:37:18,290 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-12-05 00:37:18,290 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:37:18,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-05 00:37:18,290 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:18,290 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:18,293 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-12-05 00:37:18,295 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:37:18,295 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-12-05 00:37:18,297 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-12-05 00:37:18,300 [ scc.git] DEBUG Already up to date.
2025-12-05 00:37:18,300 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-12-05 00:37:18,568 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-12-05 00:37:18,568 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-12-05 00:37:18,572 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:37:18,573 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:18,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:18,575 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-12-05 00:37:18,578 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:18,580 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-12-05 00:37:18,587 [ scc.git] DEBUG Auto-merging Dockerfile
2025-12-05 00:37:18,588 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-12-05 00:37:18,588 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-12-05 00:37:18,588 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-12-05 00:37:18,590 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-12-05 00:37:18,595 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-12-05 00:37:18,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:18,734 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-12-05 00:37:18,737 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-12-05 00:37:18,739 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#593](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-12-05 00:37:18,741 [ scc.config] DEBUG Found github.token
2025-12-05 00:37:18,742 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-12-05 00:37:18,742 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:37:18,779 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:18,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:18,781 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:37:18,817 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:37:18,821 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77cf13c10> has no local changes
2025-12-05 00:37:18,821 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:37:18,826 [ scc.git] DEBUG [detached HEAD f34721c] merge master -Dorg -Ssuccess-only
2025-12-05 00:37:18,827 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:18,827 [ scc.git] INFO Overriding base-branch from master to develop
2025-12-05 00:37:18,827 [ scc.repo] DEBUG ## PRs found:
2025-12-05 00:37:19,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-12-05 00:37:19,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None
2025-12-05 00:37:20,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-05 00:37:20,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-12-05 00:37:21,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-12-05 00:37:21,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None
2025-12-05 00:37:22,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2
2025-12-05 00:37:22,078 [ scc.repo] DEBUG - PR 231 jburel 'Create Release '
2025-12-05 00:37:22,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/229 HTTP/1.1" 200 None
2025-12-05 00:37:23,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/229/comments HTTP/1.1" 200 None
2025-12-05 00:37:23,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-12-05 00:37:24,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-12-05 00:37:24,197 [ scc.repo] DEBUG ## Branches found:
2025-12-05 00:37:24,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-05 00:37:24,197 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:24,197 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:24,199 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-12-05 00:37:24,201 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-12-05 00:37:24,201 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-12-05 00:37:24,204 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-12-05 00:37:24,216 [ scc.git] DEBUG Updating 4b4c755..0c7356a
2025-12-05 00:37:24,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2025-12-05 00:37:25,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2025-12-05 00:37:26,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-12-05 00:37:26,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-12-05 00:37:27,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-12-05 00:37:27,406 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head'
2025-12-05 00:37:27,813 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-12-05 00:37:27,813 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD
2025-12-05 00:37:27,815 [ scc.git] DEBUG ## Unique users: []
2025-12-05 00:37:27,815 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:27,815 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:27,818 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-05 00:37:27,820 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:27,822 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d'
2025-12-05 00:37:27,830 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-12-05 00:37:27,832 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++----
2025-12-05 00:37:27,833 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-)
2025-12-05 00:37:27,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:27,984 [ scc.git] DEBUG Calling 'git submodule update'
2025-12-05 00:37:28,020 [ scc.git] DEBUG Get sha1 of %s
2025-12-05 00:37:28,020 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-12-05 00:37:28,023 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:37:28,059 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:37:28,062 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77c3e4cd0> has no local changes
2025-12-05 00:37:28,062 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 229 Rdornier 'Adding support for custom user label' (user: Rdornier)
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..0c7356a
Previously merged:
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:37:28,067 [ scc.git] DEBUG [detached HEAD 0efdad4] merge master -Dorg -Ssuccess-only
2025-12-05 00:37:28,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:28,068 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-12-05 00:37:28,134 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-12-05 00:37:28,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:28,408 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-12-05 00:37:28,410 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-12-05 00:37:28,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:28,819 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-12-05 00:37:28,821 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-12-05 00:37:29,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:29,242 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-12-05 00:37:29,244 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-12-05 00:37:29,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:29,651 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-12-05 00:37:30,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:30,047 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-12-05 00:37:30,048 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-12-05 00:37:30,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:30,458 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-12-05 00:37:30,460 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-12-05 00:37:30,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:30,875 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-12-05 00:37:30,877 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-12-05 00:37:31,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:31,278 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-12-05 00:37:31,280 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-12-05 00:37:31,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:31,674 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-12-05 00:37:31,676 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-12-05 00:37:32,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:32,069 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-12-05 00:37:32,071 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-12-05 00:37:32,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:32,479 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-12-05 00:37:32,481 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-12-05 00:37:32,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:32,877 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-12-05 00:37:32,879 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-12-05 00:37:33,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:33,272 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-12-05 00:37:33,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:33,665 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-12-05 00:37:34,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:34,065 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-12-05 00:37:34,067 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-12-05 00:37:34,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:34,474 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-12-05 00:37:34,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:34,901 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-12-05 00:37:35,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:35,290 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-12-05 00:37:35,292 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-12-05 00:37:35,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:35,679 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-12-05 00:37:35,681 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-12-05 00:37:36,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:36,081 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-12-05 00:37:36,083 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-12-05 00:37:36,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:36,498 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-12-05 00:37:36,499 [ scc.config] DEBUG Found submodule.scripts.url
2025-12-05 00:37:36,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-12-05 00:37:36,886 [ scc.config] DEBUG Found submodule.scripts.branch
2025-12-05 00:37:36,886 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-12-05 00:37:36,962 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe77cf381d0> has local changes
2025-12-05 00:37:36,962 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
- PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
Conflicting PRs (not included):
- PR 74 jburel 'Replace manual changelog by automated GH release step'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 651 Rdornier 'More compliant align to grid' (user: Rdornier)
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' (user: Rdornier)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..691a9a60
Previously merged:
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 650 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 637 Rdornier 'Fix scalebar position'
- PR 643 Rdornier 'Shape scaling'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..14c1231
Previously merged:
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 229 Rdornier 'Adding support for custom user label' (user: Rdornier)
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..0c7356a
Previously merged:
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 231 jburel 'Create Release '
Generated by OMERO-plugins-push#593 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/593/)'
2025-12-05 00:37:36,972 [ scc.git] DEBUG [detached HEAD b5e991d] merge master -Dorg -Ssuccess-only
2025-12-05 00:37:36,972 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-12-05 00:37:36,972 [ scc.merge] INFO Repository: ome/omero-plugins
2025-12-05 00:37:36,972 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,972 [ scc.merge] INFO
2025-12-05 00:37:36,972 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,972 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-12-05 00:37:36,972 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-12-05 00:37:36,972 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-12-05 00:37:36,972 [ scc.merge] INFO
2025-12-05 00:37:36,972 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-12-05 00:37:36,973 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-12-05 00:37:36,973 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-12-05 00:37:36,973 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-12-05 00:37:36,973 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-12-05 00:37:36,973 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-12-05 00:37:36,973 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-12-05 00:37:36,973 [ scc.merge] INFO Updating 11d3587..37ea700
2025-12-05 00:37:36,973 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-05 00:37:36,973 [ scc.merge] INFO
2025-12-05 00:37:36,973 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-12-05 00:37:36,973 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Repository: ome/omero-figure
2025-12-05 00:37:36,974 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' (user: Rdornier)
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' (user: Rdornier)
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-12-05 00:37:36,974 [ scc.merge] INFO Updating 9cc36cde..691a9a60
2025-12-05 00:37:36,974 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 643 Rdornier 'Shape scaling'
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-12-05 00:37:36,974 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Repository: ome/omero-gallery
2025-12-05 00:37:36,974 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,974 [ scc.merge] INFO
2025-12-05 00:37:36,974 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-12-05 00:37:36,974 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-12-05 00:37:36,975 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-12-05 00:37:36,975 [ scc.merge] INFO Updating 7a798ce..5e2de43
2025-12-05 00:37:36,975 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Repository: ome/omero-mapr
2025-12-05 00:37:36,975 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-12-05 00:37:36,975 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Repository: ome/omero-metadata
2025-12-05 00:37:36,975 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-12-05 00:37:36,975 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,975 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-05 00:37:36,975 [ scc.merge] INFO
2025-12-05 00:37:36,975 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Repository: ome/omero-parade
2025-12-05 00:37:36,976 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-12-05 00:37:36,976 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-12-05 00:37:36,976 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Repository: ome/omero-rois
2025-12-05 00:37:36,976 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-12-05 00:37:36,976 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Repository: ome/omero-signup
2025-12-05 00:37:36,976 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-12-05 00:37:36,976 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-12-05 00:37:36,976 [ scc.merge] INFO Updating cda3ec6..14c1231
2025-12-05 00:37:36,976 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2025-12-05 00:37:36,976 [ scc.merge] INFO
2025-12-05 00:37:36,976 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,976 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Repository: ome/omero-upload
2025-12-05 00:37:36,977 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-12-05 00:37:36,977 [ scc.merge] INFO Updating deab817..160d894
2025-12-05 00:37:36,977 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-12-05 00:37:36,977 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-12-05 00:37:36,977 [ scc.merge] INFO Updating 8f3c313..4e1e685
2025-12-05 00:37:36,977 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-12-05 00:37:36,977 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-12-05 00:37:36,977 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-12-05 00:37:36,977 [ scc.merge] INFO Already up to date.
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Conflicting PRs (not included):
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-12-05 00:37:36,977 [ scc.merge] INFO
2025-12-05 00:37:36,977 [ scc.merge] INFO Repository: ome/scripts
2025-12-05 00:37:36,977 [ scc.merge] INFO Excluded PRs:
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' (user: Rdornier)
2025-12-05 00:37:36,977 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-12-05 00:37:36,977 [ scc.merge] INFO Updating 4b4c755..0c7356a
2025-12-05 00:37:36,978 [ scc.merge] INFO Previously merged:
2025-12-05 00:37:36,978 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-12-05 00:37:36,978 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2025-12-05 00:37:36,978 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-12-05 00:37:36,978 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-12-05 00:37:36,978 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-12-05 00:37:36,978 [ scc.merge] INFO
2025-12-05 00:37:36,978 [ scc.merge] INFO Merged PRs:
2025-12-05 00:37:36,978 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2025-12-05 00:37:36,978 [ scc.merge] INFO
2025-12-05 00:37:36,978 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-12-05 00:37:36,978 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-12-05 00:37:36,980 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,982 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,982 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-12-05 00:37:36,982 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-12-05 00:37:36,984 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-12-05 00:37:36,986 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-12-05 00:37:36,988 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-12-05 00:37:36,990 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-12-05 00:37:36,992 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-12-05 00:37:36,994 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,996 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,996 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-12-05 00:37:36,996 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:36,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:36,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-12-05 00:37:36,998 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,000 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,000 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-12-05 00:37:37,000 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-12-05 00:37:37,002 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,004 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,004 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-12-05 00:37:37,004 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,006 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,006 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-12-05 00:37:37,006 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,008 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,008 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-12-05 00:37:37,008 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,010 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,010 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-12-05 00:37:37,010 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,012 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-12-05 00:37:37,012 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,014 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-12-05 00:37:37,014 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-12-05 00:37:37,016 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,018 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-12-05 00:37:37,018 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-12-05 00:37:37,020 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-12-05 00:37:37,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-12-05 00:37:37,021 [ scc.git] DEBUG Calling 'git remote'
2025-12-05 00:37:37,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD f9a00f9] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 8c478af] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-12-05 00:38:23,981 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-12-05 00:38:33,306 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-12-05 00:38:35,744 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-05 00:38:40,447 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-12-05 00:39:21,406 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/aacddba8/images/svgs/logo.svg){kind=logo}
