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inflating: openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/psql-header.sql
00:58:57 inflating: openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/schema.sql
00:58:57 inflating: openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/views.sql
00:58:57 inflating: openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9/test.xml
00:58:57 inflating: openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9/update_dependencies.sh
00:58:57 extracting: openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9/components/antlib/resources/gitversion.xml
00:58:57 extracting: openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9/components/tools/OmeroCpp/cmake/GitVersion.cmake
00:58:57 + rm -f openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9.zip
00:58:57 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-578-8eaf18f124-ice36-b9 /home/omero/workspace/OMERO-training/openmicroscopy
00:58:57 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:58:57 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:58:57 ++ ls OMERO.server-5.6.3-578-8eaf18f124-ice36-b9.zip
00:58:57 + ZIP=OMERO.server-5.6.3-578-8eaf18f124-ice36-b9.zip
00:58:57 + DIST=OMERO.server-5.6.3-578-8eaf18f124-ice36-b9
00:58:57 + unzip -n OMERO.server-5.6.3-578-8eaf18f124-ice36-b9.zip
00:58:57 Archive: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9.zip
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/blitz/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/grid/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/profiles/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/error/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/grid/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/luts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/luts/janelia/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/luts/matplotlib/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/luts/ncsa_paledit/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/luts/seaborn/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/luts/wcif/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/omero/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/omero/analysis_scripts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/omero/annotation_scripts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/omero/export_scripts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/omero/figure_scripts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/omero/import_scripts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/scripts/omero/util_scripts/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/misc/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__1/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__10/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__11/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__2/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__3/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__4/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__5/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__6/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__7/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__8/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__9/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__4/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__5/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__6/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__7/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.1__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.2__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.2__0/t/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.3__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.4__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.0__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.1__1/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.2__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.3__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4DEV__1/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4DEV__2/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4DEV__3/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/var/
00:58:57 creating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/var/tmp/
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/LICENSE.txt
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/backup.cfg
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/blitz/mail-senders.example
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/blitz/mail-server.example
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/build.properties
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/env.bat
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/env.sh
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/hibernate.properties
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/ice.config
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/logback-cli.xml
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/logback-indexing-cli.xml
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/logback-indexing.xml
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/logback.xml
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/mime.types
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/node1.cfg
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/node2.cfg
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/omero.properties
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/profiles/psql
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/rollover.cfg
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/Windows.cfg
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/error/maintainance.html
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/grid/README
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/grid/default.xml
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/grid/templates.xml
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/grid/windefault.xml
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/ice.config
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/internal.cfg
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/master.cfg
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/templates/robot.template
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/etc/testdropbox.config
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/history.rst
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/OMEZarrReader.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/accessors-smart.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/activation.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/aggdesigner-algorithm.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/aircompressor.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/antlr.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/aopalliance.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/apiguardian-api.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/asm.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/avatica-core.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/avatica-metrics.jar
00:58:57 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/aws-java-sdk-core.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/aws-java-sdk-kms.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/aws-java-sdk-s3.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/base.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-anim.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-awt-util.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-bridge.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-codec.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-constants.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-css.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-dom.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-ext.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-gvt.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-i18n.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-parser.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-script.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-shared-resources.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-svg-dom.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-svggen.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-transcoder.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-util.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/batik-xml.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/btm.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/calcite-core.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/calcite-linq4j.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/cdm-core.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/checker-qual.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-beanutils.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-codec.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-collections.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-collections4.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-compiler.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-dbcp2.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-io.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-lang.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-lang3.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-logging.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-math.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-math3.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/commons-pool2.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/dom4j.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/ehcache.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/error_prone_annotations.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/failureaccess.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/filters.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/fontbox.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/formats-api.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/formats-bsd.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/formats-gpl.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/glacier2.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/google-http-client-xml.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/google-http-client.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/guava.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/hamcrest-core.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/hibernate-commons-annotations.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/hibernate-core.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/hibernate-jpa-2.0-api.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/hibernate-search-analyzers.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/hibernate-search.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/httpclient.jar
00:58:58 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/client/httpclient5.jar
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00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/pdfbox.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/perf4j.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/postgresql.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/proj4j.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/protobuf-java.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/quartz.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/re2j.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/reflectasm.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/serializer.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/sketches-core.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/slf4j-api.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/snakeyaml.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/solr-analysis-extras.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/solr-commons-csv.jar
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00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/specification.jar
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00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/spring-beans.jar
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00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/spring-security-core.jar
00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/spring-security-ldap.jar
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00:58:59 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/lib/server/sqlite-jdbc.jar
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00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/README
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/agpl.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/antlr.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/apache-v1.1.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/apache-v2.0.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/asm.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/bouncy_castle_license.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/bsd.txt
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00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/crystalclear.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/django.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/dom4j.txt
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00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/fbsd.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/freemarker.txt
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00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/iconsweets_license.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/jamon.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/jmock.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/jquery.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/jtidy.txt
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00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/matplotlib.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/mit.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/mpl-v1_0.htm
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/npl-1_1.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/path.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/pil.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/postgresql.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/psf-v2.0.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/psf-v2.5.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/scons.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/slf4j.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/tablelayout.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/which.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/zlib-libpng.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/share/licenses/zpl-v2.1.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/README.txt
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/misc/Makefile
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/misc/current.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/misc/enums.py
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__1/OMERO3__7.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__3/OMERO3__5.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__4/OMERO3__5.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__4/OMERO3__1.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__5/OMERO3__4.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__6/OMERO3__5.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO3__7/OMERO3__6.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO4__0/OMERO3A__11.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/psql-footer.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/psql-header.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/schema.sql
00:59:00 inflating: OMERO.server-5.6.3-578-8eaf18f124-ice36-b9/sql/psql/OMERO5.4__0/views.sql
00:59:00 + rm -f OMERO.server-5.6.3-578-8eaf18f124-ice36-b9.zip
00:59:00 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-578-8eaf18f124-ice36-b9 /home/omero/workspace/OMERO-training/OMERO.server
00:59:00 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
00:59:00 ++ deactivate nondestructive
00:59:00 ++ '[' -n '' ']'
00:59:00 ++ '[' -n '' ']'
00:59:00 ++ hash -r
00:59:00 ++ '[' -n '' ']'
00:59:00 ++ unset VIRTUAL_ENV
00:59:00 ++ unset VIRTUAL_ENV_PROMPT
00:59:00 ++ '[' '!' nondestructive = nondestructive ']'
00:59:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
00:59:00 ++ export VIRTUAL_ENV
00:59:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:59:00 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:59:00 ++ export PATH
00:59:00 ++ '[' -n '' ']'
00:59:00 ++ '[' -z '' ']'
00:59:00 ++ _OLD_VIRTUAL_PS1=
00:59:00 ++ PS1='(.venv3) '
00:59:00 ++ export PS1
00:59:00 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:59:00 ++ export VIRTUAL_ENV_PROMPT
00:59:00 ++ hash -r
00:59:00 + for x in *.gz
00:59:00 + pip install omero_dropbox-5.7.1.dev0.tar.gz
00:59:00 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:59:00 Installing build dependencies: started
00:59:01 Installing build dependencies: finished with status 'done'
00:59:01 Getting requirements to build wheel: started
00:59:01 Getting requirements to build wheel: finished with status 'done'
00:59:01 Preparing metadata (pyproject.toml): started
00:59:01 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:01 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
00:59:01 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:59:01 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:01 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:59:01 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:01 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:59:01 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0)
00:59:02 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:02 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:59:02 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:59:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:59:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:59:02 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
00:59:02 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:59:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:59:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:59:02 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2)
00:59:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:59:02 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:59:02 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:59:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:59:02 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:59:02 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:59:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:59:02 Building wheels for collected packages: omero-dropbox
00:59:02 Building wheel for omero-dropbox (pyproject.toml): started
00:59:02 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:59:02 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=0fab04e33675058f5dbfd555a99afe39bf9f40b7beab500f164cda08822a26d3
00:59:02 Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
00:59:02 Successfully built omero-dropbox
00:59:02 Installing collected packages: appdirs, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
00:59:05
00:59:05 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.21.3 portalocker-3.2.0
00:59:05 + for x in *.gz
00:59:05 + pip install omero_marshal-0.9.2.dev0.tar.gz
00:59:05 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:59:05 Installing build dependencies: started
00:59:06 Installing build dependencies: finished with status 'done'
00:59:06 Getting requirements to build wheel: started
00:59:06 Getting requirements to build wheel: finished with status 'done'
00:59:06 Preparing metadata (pyproject.toml): started
00:59:06 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:06 Building wheels for collected packages: omero_marshal
00:59:06 Building wheel for omero_marshal (pyproject.toml): started
00:59:07 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:59:07 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=d11a1f89a12b4e718e7b3f6cb7e4fc51bf34da401bde7f72e23daadf8d195b75
00:59:07 Stored in directory: /home/omero/.cache/pip/wheels/a7/49/f8/ee97ae6cd0ac1217d15421daf522887b20ca2595964479e97a
00:59:07 Successfully built omero_marshal
00:59:07 Installing collected packages: omero_marshal
00:59:07 Successfully installed omero_marshal-0.9.2.dev0
00:59:07 + for x in *.gz
00:59:07 + pip install omero_py-5.22.0.dev0.tar.gz
00:59:07 Processing ./omero_py-5.22.0.dev0.tar.gz
00:59:07 Installing build dependencies: started
00:59:09 Installing build dependencies: finished with status 'done'
00:59:09 Getting requirements to build wheel: started
00:59:09 Getting requirements to build wheel: finished with status 'done'
00:59:09 Preparing metadata (pyproject.toml): started
00:59:09 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:59:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:59:09 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0)
00:59:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:59:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:59:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:59:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:59:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:59:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:59:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:59:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2)
00:59:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:59:09 Building wheels for collected packages: omero-py
00:59:09 Building wheel for omero-py (pyproject.toml): started
00:59:10 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:59:10 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=2bb8bb2d80bc2849b5edd8003baaaf0454ce7c6deada10c8b790d26f3c893602
00:59:10 Stored in directory: /home/omero/.cache/pip/wheels/49/1e/74/58987fa60a9f6faa550bb72f45a160140f621644781946afb3
00:59:11 Successfully built omero-py
00:59:11 Installing collected packages: omero-py
00:59:11 Attempting uninstall: omero-py
00:59:11 Found existing installation: omero-py 5.21.3
00:59:11 Uninstalling omero-py-5.21.3:
00:59:11 Successfully uninstalled omero-py-5.21.3
00:59:13 Successfully installed omero-py-5.22.0.dev0
00:59:13 + for x in *.gz
00:59:13 + pip install omero_scripts-5.9.2.dev0.tar.gz
00:59:13 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:59:13 Installing build dependencies: started
00:59:14 Installing build dependencies: finished with status 'done'
00:59:14 Getting requirements to build wheel: started
00:59:14 Getting requirements to build wheel: finished with status 'done'
00:59:14 Preparing metadata (pyproject.toml): started
00:59:14 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:14 Building wheels for collected packages: omero-scripts
00:59:14 Building wheel for omero-scripts (pyproject.toml): started
00:59:15 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:59:15 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=5d1097843d845ff7f0f97afd4943342b314f05edf7941ba451187bc6c683b5cf
00:59:15 Stored in directory: /home/omero/.cache/pip/wheels/6c/06/35/0bc12bfe51e7f53c18a682ede8f5b472bca001e8bc51e8a022
00:59:15 Successfully built omero-scripts
00:59:15 Installing collected packages: omero-scripts
00:59:15 Successfully installed omero-scripts-5.9.2.dev0
00:59:15 + for x in *.gz
00:59:15 + pip install omero_web-5.30.1.dev0.tar.gz
00:59:15 Processing ./omero_web-5.30.1.dev0.tar.gz
00:59:16 Installing build dependencies: started
00:59:16 Installing build dependencies: finished with status 'done'
00:59:16 Getting requirements to build wheel: started
00:59:17 Getting requirements to build wheel: finished with status 'done'
00:59:17 Preparing metadata (pyproject.toml): started
00:59:17 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:17 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (5.22.0.dev0)
00:59:17 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.1.dev0)
00:59:17 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:59:17 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.1.dev0)
00:59:17 Using cached django-5.2.9-py3-none-any.whl.metadata (4.1 kB)
00:59:17 Collecting django-pipeline (from omero-web==5.30.1.dev0)
00:59:17 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:59:17 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.1.dev0)
00:59:17 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:59:17 Collecting whitenoise>=5.3.0 (from omero-web==5.30.1.dev0)
00:59:17 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:59:17 Collecting gunicorn>=19.3 (from omero-web==5.30.1.dev0)
00:59:17 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:59:17 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (0.9.2.dev0)
00:59:17 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (12.1.0)
00:59:17 Collecting pytz (from omero-web==5.30.1.dev0)
00:59:17 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:59:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (3.2.0)
00:59:17 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.1.dev0) (25.0)
00:59:17 Collecting importlib-resources (from omero-web==5.30.1.dev0)
00:59:17 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:59:17 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:59:17 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
00:59:17 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.1.dev0)
00:59:17 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:59:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.4.4)
00:59:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (1.0.0)
00:59:17 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.4.0)
00:59:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (6.0.3)
00:59:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.6.5)
00:59:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.32.5)
00:59:17 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.1.dev0) (80.9.0)
00:59:17 Collecting wheel (from django-pipeline->omero-web==5.30.1.dev0)
00:59:17 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:59:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.4.4)
00:59:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (3.11)
00:59:17 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2.6.2)
00:59:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.1.dev0) (2026.1.4)
00:59:18 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:59:18 Using cached django-5.2.9-py3-none-any.whl (8.3 MB)
00:59:18 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
00:59:18 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:59:18 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:59:18 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:59:18 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:59:18 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:59:18 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:59:18 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:59:18 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:59:18 Building wheels for collected packages: omero-web
00:59:18 Building wheel for omero-web (pyproject.toml): started
00:59:19 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:59:19 Created wheel for omero-web: filename=omero_web-5.30.1.dev0-py3-none-any.whl size=2819192 sha256=f919e158dc9509bf5c805132ee3e1168a9e0731322cd007420444e040b2f945e
00:59:19 Stored in directory: /home/omero/.cache/pip/wheels/25/96/4f/2ec648b1980762e44166954499e5bbc51d7ea44ad9a2fdfbc4
00:59:19 Successfully built omero-web
00:59:19 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:59:21
00:59:21 Successfully installed Django-5.2.9 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
00:59:22 + cd /home/omero/workspace/OMERO-training/OMERO.server
00:59:22 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
00:59:22 + HOSTNAME=9aa82dd07910
00:59:22 + PORT=4064
00:59:22 + WEBHOST=http://nginx/web
00:59:22 + SERVER_NAME=omero
00:59:22 + ROOT_PASSWORD=omero
00:59:22 + GROUP_NAME=training_group
00:59:22 + GROUP_NAME_2=training_group-2
00:59:22 + USER_NAME=training_user
00:59:22 + USER_NAME_2=training_user-2
00:59:22 + LIGHTADMIN_USER_NAME=ladmin_user
00:59:22 + USER_PASSWORD=ome
00:59:22 + CONFIG_FILENAME=training_ice.config
00:59:22 + omero login root@9aa82dd07910:4064 -w omero
00:59:22 Created session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:22 + omero group add training_group --type read-only --ignore-existing
00:59:23 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:23 Group exists: training_group (id=3)
00:59:23 + omero group add training_group-2 --type read-only --ignore-existing
00:59:24 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:24 Group exists: training_group-2 (id=4)
00:59:24 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
00:59:25 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:25 User exists: training_user (id=2)
00:59:25 + omero user joingroup --name training_user --group-name training_group training_group-2
00:59:26 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:26 2 is already in group 3
00:59:26 2 is already in group 4
00:59:26 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
00:59:27 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:27 User exists: training_user-2 (id=3)
00:59:27 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
00:59:28 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:28 3 is already in group 3
00:59:28 3 is already in group 4
00:59:28 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
00:59:29 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:29 User exists: ladmin_user (id=4)
00:59:29 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
00:59:30 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:30 4 is already in group 3
00:59:30 4 is already in group 4
00:59:30 ++ omero user info ladmin_user --style plain
00:59:30 ++ cut -d, -f1
00:59:31 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:31 + id=4
00:59:31 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
00:59:32 Using session for root@9aa82dd07910:4064. Idle timeout: 10 min. Current group: system
00:59:32 Experimenter:4
00:59:32 + omero logout
00:59:33 + touch test.fake
00:59:33 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group
00:59:34 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:34 + nProjects=1
00:59:34 + nDatasets=2
00:59:34 + echo 'Creating projects and datasets'
00:59:34 Creating projects and datasets
00:59:34 + (( i=1 ))
00:59:34 + (( i<=1 ))
00:59:34 ++ omero obj new Project 'name=Project 1'
00:59:34 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:35 + project=Project:351
00:59:35 + (( j=1 ))
00:59:35 + (( j<=2 ))
00:59:35 ++ omero obj new Dataset 'name=Dataset 1-1'
00:59:35 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:36 + dataset=Dataset:351
00:59:36 + omero obj new ProjectDatasetLink parent=Project:351 child=Dataset:351
00:59:36 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:36 ProjectDatasetLink:351
00:59:36 + echo 'Importing image into dataset'
00:59:36 Importing image into dataset
00:59:36 + omero import -d Dataset:351 test.fake --debug ERROR
00:59:37 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:38 2026-01-06 00:59:38,307 248 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:59:38 2026-01-06 00:59:38,323 264 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 0ce0f57bd35acdd85d2e8cb2d89d6695762ef087 date: 6 January 2026
00:59:41 Image:851
00:59:41 Other imported objects:
00:59:41 Fileset:351
00:59:41
00:59:41 ==> Summary
00:59:41 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.971
00:59:41 + (( j++ ))
00:59:41 + (( j<=2 ))
00:59:41 ++ omero obj new Dataset 'name=Dataset 1-2'
00:59:42 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:42 + dataset=Dataset:352
00:59:42 + omero obj new ProjectDatasetLink parent=Project:351 child=Dataset:352
00:59:43 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:43 ProjectDatasetLink:352
00:59:43 + echo 'Importing image into dataset'
00:59:43 Importing image into dataset
00:59:43 + omero import -d Dataset:352 test.fake --debug ERROR
00:59:44 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:45 2026-01-06 00:59:45,010 236 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
00:59:45 2026-01-06 00:59:45,025 251 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 0ce0f57bd35acdd85d2e8cb2d89d6695762ef087 date: 6 January 2026
00:59:48 Image:852
00:59:48 Other imported objects:
00:59:48 Fileset:352
00:59:48
00:59:48 ==> Summary
00:59:48 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.140
00:59:48 + (( j++ ))
00:59:48 + (( j<=2 ))
00:59:48 + (( i++ ))
00:59:48 + (( i<=1 ))
00:59:48 + (( j=1 ))
00:59:48 + (( j<=2 ))
00:59:48 + omero obj new Dataset 'name=Orphaned dataset 1'
00:59:49 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:49 Dataset:353
00:59:49 + (( j++ ))
00:59:49 + (( j<=2 ))
00:59:49 + omero obj new Dataset 'name=Orphaned dataset 2'
00:59:50 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:50 Dataset:354
00:59:50 + (( j++ ))
00:59:50 + (( j<=2 ))
00:59:50 + echo 'Importing image file'
00:59:50 Importing image file
00:59:50 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:59:50 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:59:54 ++ sed -n -e 's/^Image://p' image_import.log
00:59:54 + imageid=853
00:59:54 ++ omero obj new MapAnnotation
00:59:55 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:55 + MAP=MapAnnotation:401
00:59:55 + omero obj map-set MapAnnotation:401 mapValue testkey testvalue
00:59:56 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:56 MapAnnotation:401
00:59:56 + omero obj new ImageAnnotationLink parent=Image:853 child=MapAnnotation:401
00:59:57 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:57 ImageAnnotationLink:351
00:59:57 ++ omero obj new Screen name=Screen
00:59:58 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:58 + screen=Screen:351
00:59:58 ++ omero obj new Plate name=Plate
00:59:59 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
00:59:59 + plate=Plate:351
00:59:59 + omero obj new ScreenPlateLink parent=Screen:351 child=Plate:351
01:00:00 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:00 ScreenPlateLink:351
01:00:00 + echo 'Importing SPW file'
01:00:00 Importing SPW file
01:00:00 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:00:00 + omero import -r Screen:351 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:00:07 ++ sed -n -e 's/^Plate://p' plate_import.log
01:00:07 + plateid=352
01:00:07 + omero logout
01:00:07 + omero login training_user-2@9aa82dd07910:4064 -w ome -g training_group
01:00:08 Created session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:08 + omero obj new Project 'name=Project 0'
01:00:09 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:09 Project:352
01:00:09 + omero obj new Dataset 'name=Dataset 0'
01:00:10 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:10 Dataset:355
01:00:10 + omero import test.fake --debug ERROR
01:00:11 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:12 2026-01-06 01:00:12,240 245 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
01:00:12 2026-01-06 01:00:12,255 260 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 0ce0f57bd35acdd85d2e8cb2d89d6695762ef087 date: 6 January 2026
01:00:14 Image:857
01:00:14 Other imported objects:
01:00:14 Fileset:355
01:00:14
01:00:14 ==> Summary
01:00:14 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.687
01:00:14 + omero obj new Screen name=Screen
01:00:15 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:15 Screen:352
01:00:15 + omero obj new Plate name=Plate
01:00:16 Using session for training_user-2@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group
01:00:16 Plate:353
01:00:16 + omero login training_user@9aa82dd07910:4064 -w ome -g training_group-2
01:00:17 Created session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:17 + omero obj new Project 'name=Project 0'
01:00:18 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:18 Project:353
01:00:18 + omero obj new Dataset 'name=Dataset 0'
01:00:19 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:19 Dataset:356
01:00:19 + omero import test.fake --debug ERROR
01:00:20 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:20 2026-01-06 01:00:20,645 266 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.4-SNAPSHOT
01:00:20 2026-01-06 01:00:20,660 281 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.4.0-SNAPSHOT revision: 0ce0f57bd35acdd85d2e8cb2d89d6695762ef087 date: 6 January 2026
01:00:22 Image:858
01:00:22 Other imported objects:
01:00:22 Fileset:356
01:00:22
01:00:22 ==> Summary
01:00:22 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.801
01:00:22 + omero obj new Screen name=Screen
01:00:23 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:23 Screen:353
01:00:23 + omero obj new Plate name=Plate
01:00:24 Using session for training_user@9aa82dd07910:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:24 Plate:354
01:00:24 + omero logout
01:00:25 + echo omero.host=9aa82dd07910
01:00:25 + echo omero.port=4064
01:00:25 + echo omero.webhost=http://nginx/web
01:00:25 + echo omero.servername=omero
01:00:25 + echo omero.user=training_user
01:00:25 + echo omero.pass=ome
01:00:25 + echo omero.group=training_group
01:00:25 + echo omero.projectid=351
01:00:25 + echo omero.datasetid=352
01:00:25 + echo omero.imageid=853
01:00:25 + echo omero.plateid=352
01:00:25 + echo omero.screenid=351
01:00:25 + echo omero.group2=training_group-2
01:00:25 + echo omero.ladmin=ladmin_user
01:00:25 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:00:25 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:00:25 + omero sessions clear
01:00:26 1 session(s) cleared
01:00:26 !! 01/06/26 01:00:26.524 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:26 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:26 + pip install --upgrade requests
01:00:26 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.5)
01:00:26 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.4)
01:00:26 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.11)
01:00:26 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2.6.2)
01:00:26 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2026.1.4)
01:00:27 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:00:34 Running training suite
01:00:34 created 20 shapes
01:00:34 retrieved 20 shapes in 4 batches
01:00:34 Current user:
01:00:34 ID: 2
01:00:34 Username: training_user
01:00:34 Full Name: training_user training_user
01:00:34 Is Admin: False
01:00:34 []
01:00:34 Member of:
01:00:34 ID: 3 Name: training_group
01:00:34 ID: 4 Name: training_group-2
01:00:34 Current group: training_group
01:00:34 Group owners:
01:00:34 Group members:
01:00:34 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:34 ID: 2 UserName: training_user Name: training_user training_user
01:00:34 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:00:34 Owner of:
01:00:34 Admins:
01:00:34 ID: 0 UserName: root Name: root root
01:00:34 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:34 Created new Image:859 Name:"numpy image"
01:00:34 newPlane for z,t: 0 0 uint8 0 127
01:00:34 newPlane for z,t: 0 1 uint8 0 127
01:00:34 newPlane for z,t: 0 2 uint8 0 127
01:00:34 newPlane for z,t: 0 3 uint8 0 127
01:00:34 newPlane for z,t: 0 4 uint8 0 127
01:00:34 newPlane for z,t: 0 5 uint8 0 127
01:00:34 newPlane for z,t: 0 6 uint8 0 127
01:00:34 newPlane for z,t: 0 7 uint8 0 127
01:00:34 newPlane for z,t: 0 8 uint8 0 127
01:00:34 newPlane for z,t: 0 9 uint8 0 127
01:00:34 newPlane for z,t: 1 0 uint8 0 127
01:00:34 newPlane for z,t: 1 1 uint8 0 127
01:00:34 newPlane for z,t: 1 2 uint8 0 127
01:00:34 newPlane for z,t: 1 3 uint8 0 127
01:00:34 newPlane for z,t: 1 4 uint8 0 127
01:00:34 newPlane for z,t: 1 5 uint8 0 127
01:00:34 newPlane for z,t: 1 6 uint8 0 127
01:00:34 newPlane for z,t: 1 7 uint8 0 127
01:00:34 newPlane for z,t: 1 8 uint8 0 127
01:00:34 newPlane for z,t: 1 9 uint8 0 127
01:00:34 newPlane for z,t: 2 0 uint8 0 127
01:00:34 newPlane for z,t: 2 1 uint8 0 127
01:00:34 newPlane for z,t: 2 2 uint8 0 127
01:00:34 newPlane for z,t: 2 3 uint8 0 127
01:00:34 newPlane for z,t: 2 4 uint8 0 127
01:00:34 newPlane for z,t: 2 5 uint8 0 127
01:00:34 newPlane for z,t: 2 6 uint8 0 127
01:00:34 newPlane for z,t: 2 7 uint8 0 127
01:00:34 newPlane for z,t: 2 8 uint8 0 127
01:00:34 newPlane for z,t: 2 9 uint8 0 127
01:00:34 newPlane for z,t: 3 0 uint8 0 127
01:00:34 newPlane for z,t: 3 1 uint8 0 127
01:00:34 newPlane for z,t: 3 2 uint8 0 127
01:00:34 newPlane for z,t: 3 3 uint8 0 127
01:00:34 newPlane for z,t: 3 4 uint8 0 127
01:00:34 newPlane for z,t: 3 5 uint8 0 127
01:00:34 newPlane for z,t: 3 6 uint8 0 127
01:00:34 newPlane for z,t: 3 7 uint8 0 127
01:00:34 newPlane for z,t: 3 8 uint8 0 127
01:00:34 newPlane for z,t: 3 9 uint8 0 127
01:00:34 newPlane for z,t: 4 0 uint8 0 127
01:00:34 newPlane for z,t: 4 1 uint8 0 127
01:00:34 newPlane for z,t: 4 2 uint8 0 127
01:00:34 newPlane for z,t: 4 3 uint8 0 127
01:00:34 newPlane for z,t: 4 4 uint8 0 127
01:00:34 newPlane for z,t: 4 5 uint8 0 127
01:00:34 newPlane for z,t: 4 6 uint8 0 127
01:00:34 newPlane for z,t: 4 7 uint8 0 127
01:00:34 newPlane for z,t: 4 8 uint8 0 127
01:00:34 newPlane for z,t: 4 9 uint8 0 127
01:00:34 Deleting, please wait.
01:00:34 Error? False
01:00:34 853 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:34 training_user_2/Blitz-0-Ice.ThreadPool.Server-1/2026-01/06/00-59-52.784/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:34 1
01:00:34 training_user_2/Blitz-0-Ice.ThreadPool.Server-1/2026-01/06/00-59-52.784/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:34 Current group: training_group
01:00:34 Permissions: READ-ONLY (rwr---)
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Project 0 Owner: training_user-2 training_user-2
01:00:34 Project 1 Owner: training_user training_user
01:00:34 Image: <_ImageWrapper id=853>
01:00:34 Image: <_ImageWrapper id=853> Group: training_group 3
01:00:34 Image: <_ImageWrapper id=853> Channel: 0
01:00:34 Channel: 1
01:00:34 Channel: 2
01:00:34
01:00:34
01:00:34 original_metadata
01:00:34 global_metadata
01:00:34 series_metadata
01:00:34
01:00:34 Plane at zct: 0 0 0
01:00:34 [[ 0 0 0 ... 253 254 255]
01:00:34 [ 0 0 0 ... 253 254 255]
01:00:34 [ 0 0 0 ... 253 254 255]
01:00:34 ...
01:00:34 [ 0 1 2 ... 253 254 255]
01:00:34 [ 0 1 2 ... 253 254 255]
01:00:34 [ 0 1 2 ... 253 254 255]]
01:00:34 shape: (512, 512)
01:00:34 min: 0 max: 255 pixel type: uint8
01:00:34
01:00:34 Z stack of tiles:
01:00:34 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:34 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:34 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:34 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:34 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:34
01:00:34 Hyper stack of planes:
01:00:34 plane zct: (2, 0, 0) min: 0 max: 255
01:00:34 plane zct: (2, 0, 1) min: 0 max: 255
01:00:34 plane zct: (2, 0, 2) min: 0 max: 255
01:00:34 plane zct: (2, 0, 3) min: 0 max: 255
01:00:34 plane zct: (2, 0, 4) min: 0 max: 255
01:00:34 plane zct: (2, 0, 5) min: 0 max: 255
01:00:34 plane zct: (2, 0, 6) min: 0 max: 255
01:00:34 plane zct: (2, 0, 7) min: 0 max: 255
01:00:34 plane zct: (2, 0, 8) min: 0 max: 255
01:00:34 plane zct: (2, 0, 9) min: 0 max: 255
01:00:34 plane zct: (2, 1, 0) min: 0 max: 255
01:00:34 plane zct: (2, 1, 1) min: 0 max: 255
01:00:34 plane zct: (2, 1, 2) min: 0 max: 255
01:00:34 plane zct: (2, 1, 3) min: 0 max: 255
01:00:34 plane zct: (2, 1, 4) min: 0 max: 255
01:00:34 plane zct: (2, 1, 5) min: 0 max: 255
01:00:34 plane zct: (2, 1, 6) min: 0 max: 255
01:00:34 plane zct: (2, 1, 7) min: 0 max: 255
01:00:34 plane zct: (2, 1, 8) min: 0 max: 255
01:00:34 plane zct: (2, 1, 9) min: 0 max: 255
01:00:34 plane zct: (2, 2, 0) min: 0 max: 255
01:00:34 plane zct: (2, 2, 1) min: 0 max: 255
01:00:34 plane zct: (2, 2, 2) min: 0 max: 255
01:00:34 plane zct: (2, 2, 3) min: 0 max: 255
01:00:34 plane zct: (2, 2, 4) min: 0 max: 255
01:00:34 plane zct: (2, 2, 5) min: 0 max: 255
01:00:34 plane zct: (2, 2, 6) min: 0 max: 255
01:00:34 plane zct: (2, 2, 7) min: 0 max: 255
01:00:34 plane zct: (2, 2, 8) min: 0 max: 255
01:00:34 plane zct: (2, 2, 9) min: 0 max: 255
01:00:34 plane zct: (3, 0, 0) min: 0 max: 255
01:00:34 plane zct: (3, 0, 1) min: 0 max: 255
01:00:34 plane zct: (3, 0, 2) min: 0 max: 255
01:00:34 plane zct: (3, 0, 3) min: 0 max: 255
01:00:34 plane zct: (3, 0, 4) min: 0 max: 255
01:00:34 plane zct: (3, 0, 5) min: 0 max: 255
01:00:34 plane zct: (3, 0, 6) min: 0 max: 255
01:00:34 plane zct: (3, 0, 7) min: 0 max: 255
01:00:34 plane zct: (3, 0, 8) min: 0 max: 255
01:00:34 plane zct: (3, 0, 9) min: 0 max: 255
01:00:34 plane zct: (3, 1, 0) min: 0 max: 255
01:00:34 plane zct: (3, 1, 1) min: 0 max: 255
01:00:34 plane zct: (3, 1, 2) min: 0 max: 255
01:00:34 plane zct: (3, 1, 3) min: 0 max: 255
01:00:34 plane zct: (3, 1, 4) min: 0 max: 255
01:00:34 plane zct: (3, 1, 5) min: 0 max: 255
01:00:34 plane zct: (3, 1, 6) min: 0 max: 255
01:00:34 plane zct: (3, 1, 7) min: 0 max: 255
01:00:34 plane zct: (3, 1, 8) min: 0 max: 255
01:00:34 plane zct: (3, 1, 9) min: 0 max: 255
01:00:34 plane zct: (3, 2, 0) min: 0 max: 255
01:00:34 plane zct: (3, 2, 1) min: 0 max: 255
01:00:34 plane zct: (3, 2, 2) min: 0 max: 255
01:00:34 plane zct: (3, 2, 3) min: 0 max: 255
01:00:34 plane zct: (3, 2, 4) min: 0 max: 255
01:00:34 plane zct: (3, 2, 5) min: 0 max: 255
01:00:34 plane zct: (3, 2, 6) min: 0 max: 255
01:00:34 plane zct: (3, 2, 7) min: 0 max: 255
01:00:34 plane zct: (3, 2, 8) min: 0 max: 255
01:00:34 plane zct: (3, 2, 9) min: 0 max: 255
01:00:34 plane zct: (4, 0, 0) min: 0 max: 255
01:00:34 plane zct: (4, 0, 1) min: 0 max: 255
01:00:34 plane zct: (4, 0, 2) min: 0 max: 255
01:00:34 plane zct: (4, 0, 3) min: 0 max: 255
01:00:34 plane zct: (4, 0, 4) min: 0 max: 255
01:00:34 plane zct: (4, 0, 5) min: 0 max: 255
01:00:34 plane zct: (4, 0, 6) min: 0 max: 255
01:00:34 plane zct: (4, 0, 7) min: 0 max: 255
01:00:34 plane zct: (4, 0, 8) min: 0 max: 255
01:00:34 plane zct: (4, 0, 9) min: 0 max: 255
01:00:34 plane zct: (4, 1, 0) min: 0 max: 255
01:00:34 plane zct: (4, 1, 1) min: 0 max: 255
01:00:34 plane zct: (4, 1, 2) min: 0 max: 255
01:00:34 plane zct: (4, 1, 3) min: 0 max: 255
01:00:34 plane zct: (4, 1, 4) min: 0 max: 255
01:00:34 plane zct: (4, 1, 5) min: 0 max: 255
01:00:34 plane zct: (4, 1, 6) min: 0 max: 255
01:00:34 plane zct: (4, 1, 7) min: 0 max: 255
01:00:34 plane zct: (4, 1, 8) min: 0 max: 255
01:00:34 plane zct: (4, 1, 9) min: 0 max: 255
01:00:34 plane zct: (4, 2, 0) min: 0 max: 255
01:00:34 plane zct: (4, 2, 1) min: 0 max: 255
01:00:34 plane zct: (4, 2, 2) min: 0 max: 255
01:00:34 plane zct: (4, 2, 3) min: 0 max: 255
01:00:34 plane zct: (4, 2, 4) min: 0 max: 255
01:00:34 plane zct: (4, 2, 5) min: 0 max: 255
01:00:34 plane zct: (4, 2, 6) min: 0 max: 255
01:00:34 plane zct: (4, 2, 7) min: 0 max: 255
01:00:34 plane zct: (4, 2, 8) min: 0 max: 255
01:00:34 plane zct: (4, 2, 9) min: 0 max: 255
01:00:34 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
01:00:35
01:00:35 List Projects:
01:00:35 ==================================================
01:00:35 Project:1 Name:"Project 1" (owner=training_user)
01:00:35 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:00:35 Image:1 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:00:35 Image:12 Name:"New Image" (owner=training_user)
01:00:35 Image:2 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:7 Name:"New Dataset" (owner=training_user)
01:00:35 Project:7 Name:"Project 1" (owner=training_user)
01:00:35 Dataset:13 Name:"Dataset 1-1" (owner=training_user)
01:00:35 Image:13 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:14 Name:"Dataset 1-2" (owner=training_user)
01:00:35 Image:24 Name:"New Image" (owner=training_user)
01:00:35 Image:25 Name:"newImageFrom15" (owner=training_user)
01:00:35 Image:14 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:19 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:29 Name:"new Name 1" (owner=training_user)
01:00:35 Dataset:30 Name:"new Name 2" (owner=training_user)
01:00:35 Project:51 Name:"Project 1" (owner=training_user)
01:00:35 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
01:00:35 Image:551 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
01:00:35 Image:562 Name:"New Image" (owner=training_user)
01:00:35 Image:563 Name:"newImageFrom553" (owner=training_user)
01:00:35 Image:552 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:57 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:67 Name:"new Name 1" (owner=training_user)
01:00:35 Dataset:68 Name:"new Name 2" (owner=training_user)
01:00:35 Project:101 Name:"Project 1" (owner=training_user)
01:00:35 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
01:00:35 Image:601 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
01:00:35 Image:612 Name:"New Image" (owner=training_user)
01:00:35 Image:613 Name:"newImageFrom603" (owner=training_user)
01:00:35 Image:602 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:107 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:117 Name:"new Name 1" (owner=training_user)
01:00:35 Dataset:118 Name:"new Name 2" (owner=training_user)
01:00:35 Project:151 Name:"Project 1" (owner=training_user)
01:00:35 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
01:00:35 Image:651 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
01:00:35 Image:662 Name:"New Image" (owner=training_user)
01:00:35 Image:663 Name:"newImageFrom653" (owner=training_user)
01:00:35 Image:652 Name:"test.fake" (owner=training_user)
01:00:35 Dataset:157 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:167 Name:"new Name 1" (owner=training_user)
01:00:35 Dataset:168 Name:"new Name 2" (owner=training_user)
01:00:35
01:00:35 List orphaned Datasets:
01:00:35 ==================================================
01:00:35 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:15 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:16 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:10 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:9 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:8 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:11 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:12 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:17 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:25 Name:"FileAnnotationDelete" (owner=training_user)
01:00:35 Dataset:22 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:21 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:20 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:23 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:24 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:26 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:27 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:28 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
01:00:35 Dataset:64 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:65 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:66 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:60 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:59 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:58 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:61 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:62 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:110 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:109 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:108 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:111 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:112 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
01:00:35 Dataset:114 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:115 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:116 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:160 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:159 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:158 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:161 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:162 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
01:00:35 Dataset:164 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:165 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:166 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:203 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:204 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:205 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:210 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:209 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:208 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:211 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:212 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:253 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:254 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:255 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:260 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:259 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:258 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:261 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:262 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:303 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:304 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:305 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:310 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:309 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:308 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:311 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:312 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:315 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:316 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:317 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:322 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:321 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:320 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:323 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:324 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:327 Name:"Orphaned dataset 1" (owner=training_user)
01:00:35 Dataset:328 Name:"Orphaned dataset 2" (owner=training_user)
01:00:35 Dataset:329 Name:"Dataset 0" (owner=training_user-2)
01:00:35 Dataset:338 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:339 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:340 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:334 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:333 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:332 Name:"MyDataset" (owner=training_user)
01:00:35 Dataset:335 Name:"New Dataset" (owner=training_user)
01:00:35 Dataset:336 Name:"New Dataset2" (owner=training_user)
01:00:35 Dataset:337 Name:"FileAnnotationDelete" (owner=training_user)
01:00:35 Dataset:353 Name:"Orphaned dataset 1" (owner=training_user)
01:00:39 Dataset:354 Name:"Orphaned dataset 2" (owner=training_user)
01:00:39 Dataset:355 Name:"Dataset 0" (owner=training_user-2)
01:00:39
01:00:39 Images in Dataset: 352
01:00:39 ==================================================
01:00:39 Image:852 Name:"test.fake" (owner=training_user)
01:00:39
01:00:39 Image:853
01:00:39 ==================================================
01:00:39 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:39 X: 512
01:00:39 Y: 512
01:00:39 Z: 5
01:00:39 C: 3
01:00:39 T: 10
01:00:39 Channel: 0 Color: (255, 0, 0)
01:00:39 Lookup table: None
01:00:39 Is reverse intensity? False
01:00:39 Channel: 1 Color: (0, 255, 0)
01:00:39 Lookup table: None
01:00:39 Is reverse intensity? False
01:00:39 Channel: 2 Color: (0, 0, 255)
01:00:39 Lookup table: None
01:00:39 Is reverse intensity? False
01:00:39 Pixel Size X: None
01:00:39
01:00:39 List Screens:
01:00:39 ==================================================
01:00:39 Screen:1 Name:"Screen" (owner=training_user)
01:00:39 Plate:1 Name:"Plate" (owner=training_user)
01:00:39 Plate:2 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:4 Name:"Screen" (owner=training_user)
01:00:39 Plate:5 Name:"Plate" (owner=training_user)
01:00:39 Plate:6 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:51 Name:"Screen" (owner=training_user)
01:00:39 Plate:51 Name:"Plate" (owner=training_user)
01:00:39 Plate:52 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:101 Name:"Screen" (owner=training_user)
01:00:39 Plate:101 Name:"Plate" (owner=training_user)
01:00:39 Plate:102 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:151 Name:"Screen" (owner=training_user)
01:00:39 Plate:151 Name:"Plate" (owner=training_user)
01:00:39 Plate:152 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:201 Name:"Screen" (owner=training_user)
01:00:39 Plate:201 Name:"Plate" (owner=training_user)
01:00:39 Plate:202 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:251 Name:"Screen" (owner=training_user)
01:00:39 Plate:251 Name:"Plate" (owner=training_user)
01:00:39 Plate:252 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:301 Name:"Screen" (owner=training_user)
01:00:39 Plate:301 Name:"Plate" (owner=training_user)
01:00:39 Plate:302 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:304 Name:"Screen" (owner=training_user)
01:00:39 Plate:305 Name:"Plate" (owner=training_user)
01:00:39 Plate:306 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:307 Name:"Screen" (owner=training_user)
01:00:39 Plate:309 Name:"Plate" (owner=training_user)
01:00:39 Plate:310 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:351 Name:"Screen" (owner=training_user)
01:00:39 Plate:351 Name:"Plate" (owner=training_user)
01:00:39 Plate:352 Name:"Plate Name 0" (owner=training_user)
01:00:39 Screen:2 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:5 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:52 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:102 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:152 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:202 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:252 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:302 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:305 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:308 Name:"Screen" (owner=training_user-2)
01:00:39 Screen:352 Name:"Screen" (owner=training_user-2)
01:00:39
01:00:39 Plate:352
01:00:39 ==================================================
01:00:39
01:00:39 Number of fields: (0, 0)
01:00:39
01:00:39 Grid size: {'rows': 1, 'columns': 3}
01:00:39
01:00:39 Wells in Plate: Plate Name 0
01:00:39 Well: 0 0 Fields: 1
01:00:39 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 854
01:00:39 Well: 0 1 Fields: 1
01:00:39 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 855
01:00:39 Well: 0 2 Fields: 1
01:00:39 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 856
01:00:39 401 <class 'omero.model.MapAnnotationI'>
01:00:39 added by training_user
01:00:39 Image ID: 853
01:00:39 Annotation ID: 401
01:00:39 853
01:00:39 Channel rendering settings:
01:00:39 Name: 0
01:00:39 Color: FF0000
01:00:39 Active: True
01:00:39 Levels: 0.0 - 255.0
01:00:39 Name: 1
01:00:39 Color: 00FF00
01:00:39 Active: True
01:00:39 Levels: 0.0 - 255.0
01:00:39 Name: 2
01:00:39 Color: 0000FF
01:00:39 Active: True
01:00:39 Levels: 0.0 - 255.0
01:00:39 isGreyscaleRenderingModel: False
01:00:39 Default Z/T positions:
01:00:39 Z = 2, T = 0
01:00:39 Rendering Defs on Image:
01:00:39 ID: 453 (owner: training_user training_user)
01:00:39 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:00:39 ROI: ID: 352
01:00:39 Shape: id 471 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:00:39 Shape: id 472 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:00:39 ROI: ID: 353
01:00:39 Shape: id 473 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:00:39 ROI: ID: 354
01:00:39 Shape: id 474 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:00:39 ROI: ID: 355
01:00:39 Shape: id 475 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:00:39 ROI: ID: 356
01:00:39 <class 'omero.model.PolygonI'> Not supported by this code
01:00:39 Shape: id 476 theT 0 theZ 2 textValue test-Polygon
01:00:39 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:00:39 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:00:39 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:00:39 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:00:39 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:00:39 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:00:39 Removing Shape from ROI...
01:00:39 Deleting ROI: 357
01:00:39 Table Columns:
01:00:39 Uid
01:00:39 MyStringColumnInit
01:00:39 Row count: 10
01:00:39
01:00:39 Get All Data for rows: [3, 5, 7]
01:00:39 Data for Column: Uid
01:00:39 1
01:00:39 2
01:00:39 3
01:00:39 4
01:00:39 5
01:00:39 6
01:00:39 7
01:00:39 8
01:00:39 9
01:00:39 10
01:00:39 Data for Column: MyStringColumnInit
01:00:39 one
01:00:39 two
01:00:39 three
01:00:39 four
01:00:39 five
01:00:39 six
01:00:39 seven
01:00:39 eight
01:00:39 nine
01:00:39 ten
01:00:39
01:00:39 Get All Data for rows with slice: [3, 5, 7]
01:00:39 Data for Column: Uid
01:00:39 4
01:00:39 6
01:00:39 8
01:00:39 Data for Column: MyStringColumnInit
01:00:39 four
01:00:39 six
01:00:39 eight
01:00:39
01:00:39 Get Data for cols: [1] and between rows: 3 - 7
01:00:39 Data for Column: MyStringColumnInit
01:00:39 four
01:00:39 five
01:00:39 six
01:00:39 seven
01:00:39
01:00:39 Get Data for cols: [1] and between rows: 3 - 7 with slice
01:00:39 Data for Column: MyStringColumnInit
01:00:39 four
01:00:39 five
01:00:39 six
01:00:39 seven
01:00:39 Query Results for Column: Uid
01:00:39 3
01:00:39 4
01:00:39 5
01:00:39 6
01:00:39 7
01:00:39 8
01:00:39 Query Results for Column: MyStringColumnInit
01:00:39 three
01:00:39 four
01:00:39 five
01:00:39 six
01:00:39 seven
01:00:39 eight
01:00:39 Opened table with row-count: 10
01:00:39 New dataset, Id: 357
01:00:39 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
01:00:39 405 <class 'omero.model.TagAnnotationI'> added by training_user
01:00:39 Tag value: New Tag
01:00:39 406 <class 'omero.model.MapAnnotationI'> added by training_user
01:00:39
01:00:39 Creating an OriginalFile and FileAnnotation
01:00:39 Attaching FileAnnotation to Dataset: File ID: 407 , README.txt Size: 15
01:00:39
01:00:39 Annotations on Dataset: New Dataset
01:00:39 File ID: 1052 README.txt Size: 15
01:00:39
01:00:39 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
01:00:39 File downloaded!
01:00:39 207 README.txt
01:00:39 257 README.txt
01:00:39 7 README.txt
01:00:39 157 README.txt
01:00:39 307 README.txt
01:00:39 57 README.txt
01:00:39 333 README.txt
01:00:39 20 README.txt
01:00:39 107 README.txt
01:00:39 407 README.txt
01:00:39 320 README.txt
01:00:39 Found Annotation with namespace: imperial.training.demo
01:00:39 Plane: 0 0 0
01:00:39 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
01:00:39 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
01:00:39
01:00:39 List Datasets:
01:00:39 ID: 360 Name: MyDataset
01:00:39 ID: 359 Name: MyDataset
01:00:39 ID: 358 Name: MyDataset
01:00:39 ID: 340 Name: MyDataset
01:00:39 ID: 339 Name: MyDataset
01:00:39 ID: 338 Name: MyDataset
01:00:39 ID: 334 Name: MyDataset
01:00:39 ID: 333 Name: MyDataset
01:00:39 ID: 332 Name: MyDataset
01:00:39 ID: 322 Name: MyDataset
01:00:39 ID: 321 Name: MyDataset
01:00:39 ID: 320 Name: MyDataset
01:00:39 ID: 310 Name: MyDataset
01:00:39 ID: 309 Name: MyDataset
01:00:39 ID: 308 Name: MyDataset
01:00:39 ID: 260 Name: MyDataset
01:00:39 ID: 259 Name: MyDataset
01:00:39 ID: 258 Name: MyDataset
01:00:39 ID: 210 Name: MyDataset
01:00:39 ID: 209 Name: MyDataset
01:00:39 ID: 208 Name: MyDataset
01:00:39 ID: 166 Name: MyDataset
01:00:39 ID: 165 Name: MyDataset
01:00:39 ID: 164 Name: MyDataset
01:00:39 ID: 160 Name: MyDataset
01:00:39 ID: 159 Name: MyDataset
01:00:39 ID: 158 Name: MyDataset
01:00:39 ID: 116 Name: MyDataset
01:00:39 ID: 115 Name: MyDataset
01:00:39 ID: 114 Name: MyDataset
01:00:39 ID: 110 Name: MyDataset
01:00:39 ID: 109 Name: MyDataset
01:00:39 ID: 108 Name: MyDataset
01:00:39 ID: 66 Name: MyDataset
01:00:39 ID: 65 Name: MyDataset
01:00:39 ID: 64 Name: MyDataset
01:00:39 ID: 60 Name: MyDataset
01:00:39 ID: 59 Name: MyDataset
01:00:39 ID: 58 Name: MyDataset
01:00:39 ID: 28 Name: MyDataset
01:00:39 ID: 27 Name: MyDataset
01:00:39 ID: 26 Name: MyDataset
01:00:39 ID: 22 Name: MyDataset
01:00:42 ID: 21 Name: MyDataset
01:00:42 ID: 20 Name: MyDataset
01:00:42 ID: 10 Name: MyDataset
01:00:42 ID: 9 Name: MyDataset
01:00:42 ID: 8 Name: MyDataset
01:00:42
01:00:42 List Tags:
01:00:42 ID: 8 Text: MyTag Desc: MyTag 0
01:00:42 ID: 9 Text: MyTag Desc: MyTag 1
01:00:42 ID: 10 Text: MyTag Desc: MyTag 2
01:00:42 ID: 21 Text: MyTag Desc: MyTag 0
01:00:42 ID: 22 Text: MyTag Desc: MyTag 1
01:00:42 ID: 23 Text: MyTag Desc: MyTag 2
01:00:42 ID: 29 Text: MyTag Desc: MyTag 0
01:00:42 ID: 30 Text: MyTag Desc: MyTag 1
01:00:42 ID: 31 Text: MyTag Desc: MyTag 2
01:00:42 ID: 58 Text: MyTag Desc: MyTag 0
01:00:42 ID: 59 Text: MyTag Desc: MyTag 1
01:00:42 ID: 60 Text: MyTag Desc: MyTag 2
01:00:42 ID: 66 Text: MyTag Desc: MyTag 0
01:00:42 ID: 67 Text: MyTag Desc: MyTag 1
01:00:42 ID: 68 Text: MyTag Desc: MyTag 2
01:00:42 ID: 108 Text: MyTag Desc: MyTag 0
01:00:42 ID: 109 Text: MyTag Desc: MyTag 1
01:00:42 ID: 110 Text: MyTag Desc: MyTag 2
01:00:42 ID: 116 Text: MyTag Desc: MyTag 0
01:00:42 ID: 117 Text: MyTag Desc: MyTag 1
01:00:42 ID: 118 Text: MyTag Desc: MyTag 2
01:00:42 ID: 158 Text: MyTag Desc: MyTag 0
01:00:42 ID: 159 Text: MyTag Desc: MyTag 1
01:00:42 ID: 160 Text: MyTag Desc: MyTag 2
01:00:42 ID: 166 Text: MyTag Desc: MyTag 0
01:00:42 ID: 167 Text: MyTag Desc: MyTag 1
01:00:42 ID: 168 Text: MyTag Desc: MyTag 2
01:00:42 ID: 208 Text: MyTag Desc: MyTag 0
01:00:42 ID: 209 Text: MyTag Desc: MyTag 1
01:00:42 ID: 210 Text: MyTag Desc: MyTag 2
01:00:42 ID: 258 Text: MyTag Desc: MyTag 0
01:00:42 ID: 259 Text: MyTag Desc: MyTag 1
01:00:42 ID: 260 Text: MyTag Desc: MyTag 2
01:00:42 ID: 308 Text: MyTag Desc: MyTag 0
01:00:42 ID: 309 Text: MyTag Desc: MyTag 1
01:00:42 ID: 310 Text: MyTag Desc: MyTag 2
01:00:42 ID: 321 Text: MyTag Desc: MyTag 0
01:00:42 ID: 322 Text: MyTag Desc: MyTag 1
01:00:42 ID: 323 Text: MyTag Desc: MyTag 2
01:00:42 ID: 334 Text: MyTag Desc: MyTag 0
01:00:42 ID: 335 Text: MyTag Desc: MyTag 1
01:00:42 ID: 336 Text: MyTag Desc: MyTag 2
01:00:42 ID: 342 Text: MyTag Desc: MyTag 0
01:00:42 ID: 343 Text: MyTag Desc: MyTag 1
01:00:42 ID: 344 Text: MyTag Desc: MyTag 2
01:00:42 ID: 408 Text: MyTag Desc: MyTag 0
01:00:42 ID: 409 Text: MyTag Desc: MyTag 1
01:00:42 ID: 410 Text: MyTag Desc: MyTag 2
01:00:42 New dataset, Id: 361
01:00:42 New dataset 2, Id: 362
01:00:42 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:42 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
01:00:42 [[ 0 0 0 ... 102 103 104]
01:00:42 [ 0 0 0 ... 102 103 104]
01:00:42 [ 0 0 0 ... 102 103 104]
01:00:42 ...
01:00:42 [ 5 6 7 ... 102 103 104]
01:00:42 [ 5 6 7 ... 102 103 104]
01:00:42 [ 5 6 7 ... 102 103 104]]
01:00:42 shape: (100, 100)
01:00:42 min: 0 max: 104 pixel type: uint8
01:00:42 Average : 53.9125
01:00:42 Getting data for T, tile: 0 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 1 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 2 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 3 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 4 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 5 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 6 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 7 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 8 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 9 (256, 0, 10, 512)
01:00:42 kymograph_data (512, 100)
01:00:42 Attaching kymograph.png to image
01:00:42 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:42 Tile at zct tile: 2 0 0 (5, 5, 100, 100)
01:00:42 [[ 0 0 0 ... 102 103 104]
01:00:42 [ 0 0 0 ... 102 103 104]
01:00:42 [ 0 0 0 ... 102 103 104]
01:00:42 ...
01:00:42 [ 5 6 7 ... 102 103 104]
01:00:42 [ 5 6 7 ... 102 103 104]
01:00:42 [ 5 6 7 ... 102 103 104]]
01:00:42 shape: (100, 100)
01:00:42 min: 0 max: 104 pixel type: uint8
01:00:42 Average : 53.9125
01:00:42 Getting data for T, tile: 0 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 1 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 2 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 3 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 4 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 5 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 6 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 7 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 8 (256, 0, 10, 512)
01:00:42 Getting data for T, tile: 9 (256, 0, 10, 512)
01:00:42 kymograph_data (512, 100)
01:00:42 Attaching kymograph.png to image
01:00:42 No file downloaded. Project not rated.
01:00:42 New image, Id: 862
01:00:42 Starting at: http://nginx/web/api/
01:00:42 CSRF token wptbA60bpjiXaBboK0Llw1BJ5EQUMKZq
01:00:42 Servers:
01:00:42 -id: 1
01:00:42 name: omero
01:00:42 host: omero
01:00:42 port: 4064
01:00:42 -id: 2
01:00:42 name: testintegration
01:00:42 host: testintegration
01:00:42 port: 14064
01:00:42 eventContext {'sessionId': 972, 'sessionUuid': 'be96a801-725c-434d-b69a-9a2c068e80a9', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
01:00:42 Projects:
01:00:42 2 Project 0
01:00:42 3 Project 0
01:00:42 Created Project: 356 API TEST foo
01:00:42 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 356, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/356/datasets/'}}
01:00:43 !! 01/06/26 01:00:43.228 error: communicator not destroyed during global destruction.+ deactivate
01:00:43 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:00:43 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:00:43 + export PATH
01:00:43 + unset _OLD_VIRTUAL_PATH
01:00:43 + '[' -n '' ']'
01:00:43 + hash -r
01:00:43 + '[' -n '' ']'
01:00:43 + unset VIRTUAL_ENV
01:00:43 + unset VIRTUAL_ENV_PROMPT
01:00:43 + '[' '!' '' = nondestructive ']'
01:00:43 + unset -f deactivate
01:00:43 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
01:00:43 + javac --release 11 -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
01:00:45 Note: Some input files use unchecked or unsafe operations.
01:00:45 Note: Recompile with -Xlint:unchecked for details.
01:00:45 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
01:00:48 omero.cmd.Delete2Response@56276db8
01:00:48 omero.cmd.Delete2Response@1d7f7be7
01:00:48 one [class java.lang.String] 1.0 [class java.lang.Double]
01:00:48 two [class java.lang.String] 2.0 [class java.lang.Double]
01:00:48 three [class java.lang.String] 3.0 [class java.lang.Double]
01:00:49 -1.0
01:00:49 0
01:00:49 1
01:00:49 2
01:00:51 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
01:00:51 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:00:51 250 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
01:00:51 251 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
01:00:51 252 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1024
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01:00:52 Project:202 Project 0
01:00:52 Project:308 Project 0
01:00:52 Project:151 Project 1
01:00:52 dataset:167 new Name 1
01:00:52 dataset:157 New Dataset
01:00:52 dataset:151 Dataset 1-1
01:00:52 dataset:152 Dataset 1-2
01:00:52 dataset:168 new Name 2
01:00:52 Project:2 Project 0
01:00:52 Project:51 Project 1
01:00:52 dataset:57 New Dataset
01:00:52 dataset:67 new Name 1
01:00:52 dataset:51 Dataset 1-1
01:00:52 dataset:68 new Name 2
01:00:52 dataset:52 Dataset 1-2
01:00:52 Project:7 Project 1
01:00:52 dataset:29 new Name 1
01:00:52 dataset:30 new Name 2
01:00:52 dataset:19 New Dataset
01:00:52 dataset:14 Dataset 1-2
01:00:52 dataset:13 Dataset 1-1
01:00:52 Project:201 Project 1
01:00:52 dataset:207 New Dataset
01:00:52 dataset:202 Dataset 1-2
01:00:52 dataset:201 Dataset 1-1
01:00:52 Project:8 Project 0
01:00:52 Project:152 Project 0
01:00:52 Project:52 Project 0
01:00:52 Project:251 Project 1
01:00:52 dataset:251 Dataset 1-1
01:00:52 dataset:257 New Dataset
01:00:52 dataset:252 Dataset 1-2
01:00:52 Project:101 Project 1
01:00:52 dataset:118 new Name 2
01:00:52 dataset:107 New Dataset
01:00:52 dataset:102 Dataset 1-2
01:00:52 dataset:117 new Name 1
01:00:52 dataset:101 Dataset 1-1
01:00:52 Project:302 Project 0
01:00:52 Project:301 Project 1
01:00:52 dataset:302 Dataset 1-2
01:00:52 dataset:301 Dataset 1-1
01:00:52 dataset:307 New Dataset
01:00:52 Project:313 Project 1
01:00:52 dataset:331 New Dataset
01:00:52 dataset:342 new Name 2
01:00:52 dataset:326 Dataset 1-2
01:00:52 dataset:341 new Name 1
01:00:52 dataset:325 Dataset 1-1
01:00:52 Project:1 Project 1
01:00:52 dataset:2 Dataset 1-2
01:00:52 dataset:7 New Dataset
01:00:52 dataset:1 Dataset 1-1
01:00:52 Project:352 Project 0
01:00:52 Project:307 Project 1
01:00:52 dataset:313 Dataset 1-1
01:00:52 dataset:314 Dataset 1-2
01:00:52 dataset:319 New Dataset
01:00:52 Project:102 Project 0
01:00:52 Project:252 Project 0
01:00:52 Project:351 Project 1
01:00:52 dataset:352 Dataset 1-2
01:00:52 dataset:357 New Dataset
01:00:52 dataset:351 Dataset 1-1
01:00:52 Project:314 Project 0
01:00:52 image:862 New Image
01:00:52 image:863 newImageFrom853
01:00:52 image:852 test.fake
01:00:52 5
01:00:52 10
01:00:52 3
01:00:52 512
01:00:52 512
01:00:52 screen:1 Screen
01:00:52 plate:2 Plate Name 0
01:00:52 plate:1 Plate
01:00:52 screen:308 Screen
01:00:52 screen:302 Screen
01:00:52 screen:2 Screen
01:00:52 screen:201 Screen
01:00:52 plate:202 Plate Name 0
01:00:52 plate:201 Plate
01:00:52 screen:5 Screen
01:00:52 screen:301 Screen
01:00:52 plate:301 Plate
01:00:52 plate:302 Plate Name 0
01:00:52 screen:351 Screen
01:00:52 plate:351 Plate
01:00:52 plate:352 Plate Name 0
01:00:52 screen:202 Screen
01:00:52 screen:51 Screen
01:00:52 plate:52 Plate Name 0
01:00:52 plate:51 Plate
01:00:52 screen:251 Screen
01:00:52 plate:251 Plate
01:00:52 plate:252 Plate Name 0
01:00:52 screen:307 Screen
01:00:52 plate:310 Plate Name 0
01:00:52 plate:309 Plate
01:00:52 screen:304 Screen
01:00:52 plate:306 Plate Name 0
01:00:52 plate:305 Plate
01:00:52 screen:101 Screen
01:00:52 plate:102 Plate Name 0
01:00:52 plate:101 Plate
01:00:52 screen:4 Screen
01:00:52 plate:6 Plate Name 0
01:00:52 plate:5 Plate
01:00:52 screen:102 Screen
01:00:52 screen:152 Screen
01:00:52 screen:252 Screen
01:00:52 screen:305 Screen
01:00:52 screen:52 Screen
01:00:52 screen:151 Screen
01:00:52 plate:151 Plate
01:00:52 plate:152 Plate Name 0
01:00:52 screen:352 Screen
01:00:52 well:351
01:00:52 well:352
01:00:52 well:353
01:00:52 plate:252
01:00:52 plate:353
01:00:52 plate:152
01:00:52 plate:253
01:00:52 plate:153
01:00:52 plate:305
01:00:52 plate:307
01:00:52 plate:309
01:00:52 plate:351
01:00:52 plate:7
01:00:52 plate:306
01:00:52 plate:101
01:00:52 plate:51
01:00:52 plate:251
01:00:52 plate:3
01:00:52 plate:203
01:00:52 plate:151
01:00:52 plate:303
01:00:52 plate:6
01:00:52 plate:103
01:00:52 plate:302
01:00:52 plate:310
01:00:52 plate:352
01:00:52 plate:5
01:00:52 plate:2
01:00:52 plate:102
01:00:52 plate:202
01:00:52 plate:1
01:00:52 plate:53
01:00:52 plate:52
01:00:52 plate:201
01:00:52 plate:311
01:00:52 plate:301
01:00:52
01:00:52 List Datasets:
01:00:52 ID: 8 Name: MyDataset
01:00:52 ID: 9 Name: MyDataset
01:00:52 ID: 10 Name: MyDataset
01:00:52 ID: 20 Name: MyDataset
01:00:52 ID: 21 Name: MyDataset
01:00:52 ID: 22 Name: MyDataset
01:00:52 ID: 26 Name: MyDataset
01:00:52 ID: 27 Name: MyDataset
01:00:52 ID: 28 Name: MyDataset
01:00:52 ID: 58 Name: MyDataset
01:00:52
01:00:52 List Tags:
01:00:52 ID: 29 NS: omero.training.demo
01:00:52 ID: 30 NS: omero.training.demo
01:00:52 ID: 31 NS: omero.training.demo
01:00:52 ID: 66 NS: omero.training.demo
01:00:52 ID: 67 NS: omero.training.demo
01:00:52 ID: 68 NS: omero.training.demo
01:00:52 ID: 116 NS: omero.training.demo
01:00:52 ID: 117 NS: omero.training.demo
01:00:52 ID: 118 NS: omero.training.demo
01:00:52 ID: 166 NS: omero.training.demo
01:00:52 Dataset:11 New Dataset
01:00:52 Dataset:311 New Dataset
01:00:52 Dataset:324 New Dataset2
01:00:52 Dataset:309 MyDataset
01:00:52 Dataset:4 Orphaned dataset 2
01:00:52 Dataset:61 New Dataset
01:00:52 Dataset:10 MyDataset
01:00:52 Dataset:26 MyDataset
01:00:52 Dataset:162 New Dataset2
01:00:52 Dataset:335 New Dataset
01:00:52 Dataset:115 MyDataset
01:00:52 Dataset:21 MyDataset
01:00:52 Dataset:304 Orphaned dataset 2
01:00:52 Dataset:361 New Dataset
01:00:52 Dataset:354 Orphaned dataset 2
01:00:52 Dataset:321 MyDataset
01:00:52 Dataset:65 MyDataset
01:00:52 Dataset:113 FileAnnotationDelete
01:00:52 Dataset:336 New Dataset2
01:00:52 Dataset:15 Orphaned dataset 1
01:00:52 Dataset:211 New Dataset
01:00:52 Dataset:103 Orphaned dataset 1
01:00:52 Project:201 Project 1
01:00:52 Dataset:3 Orphaned dataset 1
01:00:52 Dataset:159 MyDataset
01:00:52 Dataset:333 MyDataset
01:00:52 Dataset:260 MyDataset
01:00:52 Dataset:261 New Dataset
01:00:52 Dataset:253 Orphaned dataset 1
01:00:52 Dataset:320 MyDataset
01:00:52 Dataset:54 Orphaned dataset 2
01:00:52 Dataset:212 New Dataset2
01:00:52 Dataset:161 New Dataset
01:00:52 Dataset:363 FileAnnotationDelete
01:00:52 Dataset:114 MyDataset
01:00:52 Dataset:204 Orphaned dataset 2
01:00:52 Dataset:360 MyDataset
01:00:52 Dataset:340 MyDataset
01:00:52 Dataset:359 MyDataset
01:00:52 Dataset:27 MyDataset
01:00:52 Dataset:109 MyDataset
01:00:52 Dataset:303 Orphaned dataset 1
01:00:52 Dataset:339 MyDataset
01:00:52 Dataset:258 MyDataset
01:00:52 Dataset:22 MyDataset
01:00:52 Dataset:208 MyDataset
01:00:52 Dataset:308 MyDataset
01:00:52 Dataset:25 FileAnnotationDelete
01:00:52 Dataset:111 New Dataset
01:00:52 Project:151 Project 1
01:00:52 Project:301 Project 1
01:00:52 Dataset:259 MyDataset
01:00:52 Dataset:365 MyDataset
01:00:52 Dataset:322 MyDataset
01:00:52 Dataset:53 Orphaned dataset 1
01:00:52 Dataset:24 New Dataset2
01:00:52 Dataset:315 Orphaned dataset 1
01:00:52 Dataset:63 FileAnnotationDelete
01:00:52 Dataset:362 New Dataset2
01:00:52 Dataset:366 MyDataset
01:00:52 Project:101 Project 1
01:00:52 Dataset:334 MyDataset
01:00:52 Dataset:316 Orphaned dataset 2
01:00:52 Dataset:164 MyDataset
01:00:52 Project:313 Project 1
01:00:52 Dataset:64 MyDataset
01:00:52 Dataset:16 Orphaned dataset 2
01:00:52 Dataset:58 MyDataset
01:00:52 Dataset:110 MyDataset
01:00:52 Dataset:20 MyDataset
01:00:52 Dataset:323 New Dataset
01:00:52 Dataset:166 MyDataset
01:00:52 Dataset:312 New Dataset2
01:00:52 Dataset:60 MyDataset
01:00:52 Dataset:327 Orphaned dataset 1
01:00:52 Project:7 Project 1
01:00:52 Dataset:104 Orphaned dataset 2
01:00:52 Dataset:210 MyDataset
01:00:52 Project:51 Project 1
01:00:52 Dataset:337 FileAnnotationDelete
01:00:52 Dataset:23 New Dataset
01:00:52 Dataset:358 MyDataset
01:00:52 Dataset:158 MyDataset
01:00:52 Dataset:116 MyDataset
01:00:52 Dataset:62 New Dataset2
01:00:52 Project:351 Project 1
01:00:52 Dataset:262 New Dataset2
01:00:52 Dataset:153 Orphaned dataset 1
01:00:52 Dataset:59 MyDataset
01:00:52 Dataset:353 Orphaned dataset 1
01:00:52 Dataset:310 MyDataset
01:00:52 Dataset:254 Orphaned dataset 2
01:00:52 Dataset:332 MyDataset
01:00:52 Dataset:9 MyDataset
01:00:52 Dataset:12 New Dataset2
01:00:52 Project:307 Project 1
01:00:52 Dataset:338 MyDataset
01:00:52 Dataset:364 MyDataset
01:00:52 Dataset:8 MyDataset
01:00:52 Dataset:28 MyDataset
01:00:52 Project:251 Project 1
01:00:52 Dataset:112 New Dataset2
01:00:52 Dataset:163 FileAnnotationDelete
01:00:52 Dataset:165 MyDataset
01:00:52 Dataset:66 MyDataset
01:00:52 Dataset:328 Orphaned dataset 2
01:00:52 Project:1 Project 1
01:00:52 Dataset:154 Orphaned dataset 2
01:00:52 Dataset:203 Orphaned dataset 1
01:00:52 Dataset:209 MyDataset
01:00:52 Dataset:108 MyDataset
01:00:52 Dataset:160 MyDataset
01:00:52 Size:0
01:00:52 512 512
01:00:53 9
01:00:53 9
01:00:53 1
01:00:54 Logged in as ladmin_user
01:00:54 Added 'training_user's tag' to dataset New Dataset2 on behalf of training_user
01:00:54 Added 'ladmin_user's tag' to dataset New Dataset2 as admin.
01:00:54 Finished: SUCCESS
