00:58:29 Started by upstream project "Trigger" build number 18
00:58:29 originally caused by:
00:58:29 Started by timer
00:58:29 Running as SYSTEM
00:58:29 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
00:58:29 [OMERO-training] $ /bin/bash -xe /tmp/jenkins1146169428463221065.sh
00:58:29 + rm -rf /home/omero/workspace/OMERO-training/.venv3
00:58:29 + python3 -m venv /home/omero/workspace/OMERO-training/.venv3
00:58:32 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
00:58:32 ++ deactivate nondestructive
00:58:32 ++ '[' -n '' ']'
00:58:32 ++ '[' -n '' ']'
00:58:32 ++ '[' -n /bin/bash -o -n '' ']'
00:58:32 ++ hash -r
00:58:32 ++ '[' -n '' ']'
00:58:32 ++ unset VIRTUAL_ENV
00:58:32 ++ '[' '!' nondestructive = nondestructive ']'
00:58:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
00:58:32 ++ export VIRTUAL_ENV
00:58:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:32 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:32 ++ export PATH
00:58:32 ++ '[' -n '' ']'
00:58:32 ++ '[' -z '' ']'
00:58:32 ++ _OLD_VIRTUAL_PS1=
00:58:32 ++ PS1='(.venv3) '
00:58:32 ++ export PS1
00:58:32 ++ '[' -n /bin/bash -o -n '' ']'
00:58:32 ++ hash -r
00:58:32 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
00:58:32 Collecting zeroc-ice==3.6.5
00:58:33 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:58:35 Installing collected packages: zeroc-ice
00:58:35 Successfully installed zeroc-ice-3.6.5
00:58:35 WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:58:35 You should consider upgrading via the '/home/omero/workspace/OMERO-training/.venv3/bin/python3 -m pip install --upgrade pip' command.
00:58:36 + pip install -U pip future setuptools
00:58:36 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
00:58:36 Collecting pip
00:58:36 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
00:58:36 Collecting future
00:58:36 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:58:36 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
00:58:37 Collecting setuptools
00:58:37 Using cached setuptools-69.2.0-py3-none-any.whl (821 kB)
00:58:37 Installing collected packages: setuptools, pip, future
00:58:37 Attempting uninstall: setuptools
00:58:37 Found existing installation: setuptools 53.0.0
00:58:37 Uninstalling setuptools-53.0.0:
00:58:37 Successfully uninstalled setuptools-53.0.0
00:58:38 Attempting uninstall: pip
00:58:38 Found existing installation: pip 21.2.3
00:58:38 Uninstalling pip-21.2.3:
00:58:38 Successfully uninstalled pip-21.2.3
00:58:39 Successfully installed future-1.0.0 pip-24.0 setuptools-69.2.0
00:58:39 + pip install markdown
00:58:40 Collecting markdown
00:58:40 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
00:58:40 Collecting importlib-metadata>=4.4 (from markdown)
00:58:40 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
00:58:40 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
00:58:40 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
00:58:40 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
00:58:40 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
00:58:40 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
00:58:40 Installing collected packages: zipp, importlib-metadata, markdown
00:58:40 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
00:58:40 + pip install mox3 pytest 'pytest-xdist<2'
00:58:41 Collecting mox3
00:58:41 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
00:58:41 Collecting pytest
00:58:41 Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
00:58:41 Collecting pytest-xdist<2
00:58:41 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
00:58:41 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
00:58:41 Using cached pbr-6.0.0-py2.py3-none-any.whl.metadata (1.3 kB)
00:58:41 Collecting fixtures>=3.0.0 (from mox3)
00:58:41 Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
00:58:41 Collecting iniconfig (from pytest)
00:58:41 Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
00:58:41 Collecting packaging (from pytest)
00:58:41 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
00:58:41 Collecting pluggy<2.0,>=1.4 (from pytest)
00:58:41 Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
00:58:41 Collecting exceptiongroup>=1.0.0rc8 (from pytest)
00:58:41 Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB)
00:58:41 Collecting tomli>=1 (from pytest)
00:58:41 Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
00:58:41 Collecting execnet>=1.1 (from pytest-xdist<2)
00:58:41 Using cached execnet-2.0.2-py3-none-any.whl.metadata (2.9 kB)
00:58:41 Collecting pytest-forked (from pytest-xdist<2)
00:58:41 Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
00:58:41 Collecting six (from pytest-xdist<2)
00:58:41 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
00:58:41 Collecting py (from pytest-forked->pytest-xdist<2)
00:58:41 Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:58:41 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
00:58:41 Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
00:58:41 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
00:58:41 Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
00:58:41 Using cached execnet-2.0.2-py3-none-any.whl (37 kB)
00:58:41 Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
00:58:41 Using cached pbr-6.0.0-py2.py3-none-any.whl (107 kB)
00:58:41 Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
00:58:41 Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
00:58:41 Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
00:58:41 Using cached packaging-24.0-py3-none-any.whl (53 kB)
00:58:41 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
00:58:41 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
00:58:41 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
00:58:42 Installing collected packages: tomli, six, py, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-forked, mox3, pytest-xdist
00:58:42 Successfully installed exceptiongroup-1.2.0 execnet-2.0.2 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.0 pbr-6.0.0 pluggy-1.4.0 py-1.11.0 pytest-8.1.1 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.16.0 tomli-2.0.1
00:58:42 + pip install tables
00:58:43 Collecting tables
00:58:43 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
00:58:43 Collecting numpy>=1.19.0 (from tables)
00:58:43 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
00:58:43 Collecting numexpr>=2.6.2 (from tables)
00:58:43 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
00:58:43 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.0)
00:58:43 Collecting py-cpuinfo (from tables)
00:58:43 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:58:43 Collecting blosc2>=2.3.0 (from tables)
00:58:43 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
00:58:43 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
00:58:43 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
00:58:43 Collecting msgpack (from blosc2>=2.3.0->tables)
00:58:43 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
00:58:43 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:58:43 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
00:58:43 Using cached numexpr-2.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (374 kB)
00:58:43 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
00:58:43 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:58:43 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
00:58:43 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
00:58:44 Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
00:58:47 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.9.0 numpy-1.26.4 py-cpuinfo-9.0.0 tables-3.9.2
00:58:47 + pip install jinja2
00:58:47 Collecting jinja2
00:58:47 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
00:58:47 Collecting MarkupSafe>=2.0 (from jinja2)
00:58:47 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
00:58:47 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
00:58:47 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
00:58:48 Installing collected packages: MarkupSafe, jinja2
00:58:48 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
00:58:48 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero-dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-py-5.19.2.dev0.tar.gz /home/omero/workspace/OMERO-training/omero-scripts-5.8.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero-web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
00:58:48 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 15
00:58:50 Copied 2 artifacts from "OMERO-build" build number 15
00:58:50 Copied 2 artifacts from "OMERO-build-build" build number 15
00:58:50 [OMERO-training] $ /bin/bash -xe /tmp/jenkins14150084481682913222.sh
00:58:51 + source /home/settings.env
00:58:51 ++ OMERO_DB_HOST=pg
00:58:51 ++ OMERO_DB_USER=postgres
00:58:51 ++ OMERO_DB_PASS=
00:58:51 ++ OMERO_ROOT_PASS=omero
00:58:51 ++ OMERO_DATA_DIR=/OMERO
00:58:51 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:58:51 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
00:58:51 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
00:58:51 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
00:58:51 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
00:58:51 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
00:58:51 ++ ls openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 + ZIP=openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 + DIST=openmicroscopy-5.6.3-437-107a04d9e5-ice36
00:58:51 + unzip -n openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 Archive: openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.classpath-template
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.github/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.github/Pull_Request_Template.md
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.github/workflows/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.github/workflows/docker_build.yml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.github/workflows/release.yml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.github/workflows/source_build.yml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.github/workflows/update.yaml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.mailmap
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/.project
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/CMakeLists.txt
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/CONTRIBUTING.md
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/Dockerfile
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/LICENSE.txt
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/README.md
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/SUPPORT.md
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/build.bat
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/build.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/build.xml
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/.classpath
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/.project
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/excludebugs.xml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/global.xml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/hibernate.xml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/lifecycle.xml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/version.xml
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/scripts/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/scripts/parse_version
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/scripts/source-archive.py
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/build.xml
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/README.md
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/build.xml
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/plugins/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/plugins/robot.py
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/robot.template
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/web/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/web/annotation.txt
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/web/login.txt
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/web/thumbs.txt
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/web/tree.txt
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/web/webadmin.txt
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/resources/well_sample_posXY.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/robot_setup.sh
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/annotate_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/center_right_panel_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/create_scenario.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/delete_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/download_options_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/filter_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/forms_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/history_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/map_annotations_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/post_copy_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/post_cut_test.robot
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tests/ui/testcases/web/post_drag_test.robot
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/chgrp/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/chgrp/AnnotationMoveTest.java
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/chmod/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/chmod/PermissionsTest.java
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/chown/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/delete/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/delete/AdditionalDeleteTest.java
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/delete/SpwDeleteTest.java
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/gateway/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/gateway/AdminFacilityTest.java
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroJava/test/integration/thumbnail/
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/bin/omero
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/examples/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/examples/createSession.py
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/examples/load.omero
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/examples/projection_1.py
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/examples/submit.omero
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/examples/upload.omero
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/manualtests/
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/manualtests/populate_roi_test.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/setup.py
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/conftest.py
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/__init__.py
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/client_ctors.cfg
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/clitest/
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/clitest/__init__.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/clitest/cli.py
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00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/fstest/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/fstest/test_rename.py
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/gatewaytest/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroPy/test/integration/gatewaytest/__init__.py
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/linux64-native/libnativewindow_jvm.so
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/logback-build.xml
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/patches/
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/patches/hibernate-3.5-ColumnTransformer.patch.gz
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/JHotDraw-7.0.9.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/TableLayout-bin-jdk1.5-2009-08-26.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/ant-1.8.0.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/ant-contrib-1.0b3.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/ant-junit-1.8.0.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/ant-launcher-1.8.0.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/ant-nodeps-1.8.0.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/ant-trax-1.8.0.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/batik-all-1.8pre-jdk6.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/bufr-1.1.00.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/checkstyle-4.3.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/commons-validator-1.3.1.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/findbugs-ant-1.2.1.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/geronimo-spec-jta-1.0.1B-rc4.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/grib-5.1.03.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/hibernate-core-3.5.6-4510.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/hibernate-jpa-2.0-api-1.0.0.Final.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/hibernate-search-3.1.1.GA.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/hibernate-tools-3.2.0.beta11.jar
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/ivy-2.4.0.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/omero-icemock-3.5.1.jar
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/oro-2.0.8.jar
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/lib/repository/scons-local-2.1.0.zip
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/3-3-2_rgb.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/fire.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/glasbey.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/glasbey_inverted.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/glow.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/grays.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ice.lut
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/janelia/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/janelia/pup_br.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/janelia/pup_nr.lut
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/16_colors.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/5_ramps.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/6_shades.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/blue_orange_icb.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/brgbcmyw.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/cool.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/edges.lut
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00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/phase.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/royal.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/sepia.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/smart.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/thal.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/thallium.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/ncsa_paledit/unionjack.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/physics.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/red-green.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/spectrum.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/thermal.lut
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/cyan_hot.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/green_fire_blue.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/hilo.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/ica.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/ica2.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/ica3.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/magenta_hot.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/orange_hot.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/rainbow_rgb.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/red_hot.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/luts/wcif/yellow_hot.lut
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/omero.class
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/setup.cfg
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/README.txt
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/misc/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/misc/Makefile
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/misc/current.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/misc/enums.py
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__1/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__10/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__11/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__2/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__3/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__4/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__5/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__6/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__7/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__8/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__9/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__4/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__5/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__6/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__7/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.1__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.3__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.4__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__1/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__2/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__3/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:58:51 creating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-header.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/schema.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/views.sql
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/test.xml
00:58:51 inflating: openmicroscopy-5.6.3-437-107a04d9e5-ice36/update_dependencies.sh
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/antlib/resources/gitversion.xml
00:58:51 extracting: openmicroscopy-5.6.3-437-107a04d9e5-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
00:58:51 + rm -f openmicroscopy-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-437-107a04d9e5-ice36 /home/omero/workspace/OMERO-training/openmicroscopy
00:58:51 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:58:51 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
00:58:51 ++ ls OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 + ZIP=OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 + DIST=OMERO.server-5.6.3-437-107a04d9e5-ice36
00:58:51 + unzip -n OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 Archive: OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/blitz/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/grid/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/profiles/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/error/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/luts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/luts/janelia/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/luts/ncsa_paledit/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/luts/wcif/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/analysis_scripts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/annotation_scripts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/export_scripts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/figure_scripts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/import_scripts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/scripts/omero/util_scripts/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/server/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/share/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/share/licenses/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/misc/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__1/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__10/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__11/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__2/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__3/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__4/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__5/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__6/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__7/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__8/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3A__9/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__4/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__5/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__6/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO3__7/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.1__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.2__0/t/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.3__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4.4__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO4__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.0__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.1__1/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.2__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__1/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__2/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__3/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/
00:58:51 creating: OMERO.server-5.6.3-437-107a04d9e5-ice36/var/
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/LICENSE.txt
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/backup.cfg
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/blitz/mail-senders.example
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/blitz/mail-server.example
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/build.properties
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/env.bat
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/env.sh
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/hibernate.properties
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/ice.config
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback-cli.xml
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback-indexing-cli.xml
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback-indexing.xml
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/logback.xml
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/mime.types
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/node1.cfg
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/node2.cfg
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/omero.properties
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/profiles/psql
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/rollover.cfg
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/Windows.cfg
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/error/maintainance.html
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/README
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/default.xml
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/templates.xml
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/grid/windefault.xml
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/ice.config
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/internal.cfg
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/master.cfg
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/templates/robot.template
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/etc/testdropbox.config
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/history.rst
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/OMEZarrReader.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/activation.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/aggdesigner-algorithm.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/aircompressor.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/annotations.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/antlr.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/aopalliance.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/apache-client.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/arns.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/auth.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/avatica-core.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/avatica-metrics.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/aws-core.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/aws-query-protocol.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/aws-xml-protocol.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/base.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-all.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-anim.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-awt-util.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-bridge.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-codec.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-constants.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-css.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-dom.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-ext.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-extension.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-gui-util.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-gvt.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-i18n.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-parser.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-rasterizer-ext.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-rasterizer.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-script.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-slideshow.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-squiggle-ext.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-squiggle.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-svg-dom.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-svgbrowser.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-svggen.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-svgpp.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-svgrasterizer.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-swing.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-transcoder.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-ttf2svg.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-util.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/batik-xml.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/btm.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/bufr.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/c3p0.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/calcite-core.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/calcite-linq4j.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/cdm-core.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/checker-qual.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-beanutils.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-codec.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-collections.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-collections4.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-compiler.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-dbcp2.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-io.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-lang.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-lang3.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-logging.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/commons-pool2.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/dom4j.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/ehcache.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/error_prone_annotations.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/esri-geometry-api.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/eventstream.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/failureaccess.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/filters.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/fontbox.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/formats-api.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/formats-bsd.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/formats-gpl.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/glacier2.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/google-http-client-xml.jar
00:58:51 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/lib/client/google-http-client.jar
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00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/psql-header.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/schema.sql
00:58:53 inflating: OMERO.server-5.6.3-437-107a04d9e5-ice36/sql/psql/OMERO5.4__0/views.sql
00:58:53 + rm -f OMERO.server-5.6.3-437-107a04d9e5-ice36.zip
00:58:53 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-437-107a04d9e5-ice36 /home/omero/workspace/OMERO-training/OMERO.server
00:58:53 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
00:58:53 ++ deactivate nondestructive
00:58:53 ++ '[' -n '' ']'
00:58:53 ++ '[' -n '' ']'
00:58:53 ++ '[' -n /bin/bash -o -n '' ']'
00:58:53 ++ hash -r
00:58:53 ++ '[' -n '' ']'
00:58:53 ++ unset VIRTUAL_ENV
00:58:53 ++ '[' '!' nondestructive = nondestructive ']'
00:58:53 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
00:58:53 ++ export VIRTUAL_ENV
00:58:53 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:53 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:53 ++ export PATH
00:58:53 ++ '[' -n '' ']'
00:58:53 ++ '[' -z '' ']'
00:58:53 ++ _OLD_VIRTUAL_PS1=
00:58:53 ++ PS1='(.venv3) '
00:58:53 ++ export PS1
00:58:53 ++ '[' -n /bin/bash -o -n '' ']'
00:58:53 ++ hash -r
00:58:53 + for x in *.gz
00:58:53 + pip install omero-dropbox-5.6.3.dev0.tar.gz
00:58:54 Processing ./omero-dropbox-5.6.3.dev0.tar.gz
00:58:54 Installing build dependencies: started
00:58:55 Installing build dependencies: finished with status 'done'
00:58:55 Getting requirements to build wheel: started
00:58:56 Getting requirements to build wheel: finished with status 'done'
00:58:56 Installing backend dependencies: started
00:58:56 Installing backend dependencies: finished with status 'done'
00:58:56 Preparing metadata (pyproject.toml): started
00:58:57 Preparing metadata (pyproject.toml): finished with status 'done'
00:58:57 Collecting omero-py (from omero-dropbox==5.6.3.dev0)
00:58:57 Using cached omero_py-5.19.1-py3-none-any.whl.metadata (6.6 kB)
00:58:57 Collecting urllib3<2 (from omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
00:58:57 Collecting appdirs (from omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:58:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
00:58:57 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
00:58:57 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
00:58:57 Collecting PyYAML (from omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:58:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
00:58:57 Collecting requests (from omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
00:58:57 Collecting portalocker (from omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
00:58:57 Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
00:58:57 Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
00:58:57 Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.6.3.dev0)
00:58:57 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
00:58:57 Using cached omero_py-5.19.1-py3-none-any.whl (2.8 MB)
00:58:57 Using cached pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
00:58:57 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
00:58:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:58:57 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
00:58:57 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
00:58:57 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
00:58:57 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
00:58:57 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
00:58:57 Using cached idna-3.6-py3-none-any.whl (61 kB)
00:58:57 Building wheels for collected packages: omero-dropbox
00:58:57 Building wheel for omero-dropbox (pyproject.toml): started
00:58:58 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:58:58 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=ee2cbc4a541c572b904a0bc30d718ec7bd9a6f1bc2ec405884c4681edf75497a
00:58:58 Stored in directory: /home/omero/.cache/pip/wheels/70/da/3d/331719007048e84a6ccfa834fcb865d58e6f5e47143b222b43
00:58:58 Successfully built omero-dropbox
00:58:58 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
00:59:00 Successfully installed Pillow-10.2.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.6 omero-dropbox-5.6.3.dev0 omero-py-5.19.1 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
00:59:01 + for x in *.gz
00:59:01 + pip install omero_marshal-0.9.1.dev0.tar.gz
00:59:01 Processing ./omero_marshal-0.9.1.dev0.tar.gz
00:59:01 Installing build dependencies: started
00:59:05 Installing build dependencies: finished with status 'done'
00:59:05 Getting requirements to build wheel: started
00:59:05 Getting requirements to build wheel: finished with status 'done'
00:59:05 Installing backend dependencies: started
00:59:06 Installing backend dependencies: finished with status 'done'
00:59:06 Preparing metadata (pyproject.toml): started
00:59:06 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:06 Building wheels for collected packages: omero_marshal
00:59:06 Building wheel for omero_marshal (pyproject.toml): started
00:59:06 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:59:06 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=dcedfe4aaae4d40b49230f42a40b7826bf34d1409f0fa8f4660e4fd81cebb62e
00:59:06 Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
00:59:06 Successfully built omero_marshal
00:59:07 Installing collected packages: omero_marshal
00:59:07 Successfully installed omero_marshal-0.9.1.dev0
00:59:07 + for x in *.gz
00:59:07 + pip install omero-py-5.19.2.dev0.tar.gz
00:59:07 Processing ./omero-py-5.19.2.dev0.tar.gz
00:59:07 Installing build dependencies: started
00:59:09 Installing build dependencies: finished with status 'done'
00:59:09 Getting requirements to build wheel: started
00:59:09 Getting requirements to build wheel: finished with status 'done'
00:59:09 Installing backend dependencies: started
00:59:10 Installing backend dependencies: finished with status 'done'
00:59:10 Preparing metadata (pyproject.toml): started
00:59:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.18)
00:59:10 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.4.4)
00:59:10 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.0.0)
00:59:10 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (1.26.4)
00:59:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (10.2.0)
00:59:10 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (6.0.1)
00:59:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (3.6.5)
00:59:10 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.31.0)
00:59:10 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.2.dev0) (2.8.2)
00:59:10 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.3.2)
00:59:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (3.6)
00:59:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.2.dev0) (2024.2.2)
00:59:10 Building wheels for collected packages: omero-py
00:59:10 Building wheel for omero-py (pyproject.toml): started
00:59:11 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:59:11 Created wheel for omero-py: filename=omero_py-5.19.2.dev0-py3-none-any.whl size=2782017 sha256=2257923a2a41bef9c86e1380880cf35da7bd4af3a4933741f5469d6dac5551c1
00:59:11 Stored in directory: /home/omero/.cache/pip/wheels/9f/8a/96/ff4bfe740f086274aebfc36457d9e011becbee746485593d12
00:59:11 Successfully built omero-py
00:59:12 Installing collected packages: omero-py
00:59:12 Attempting uninstall: omero-py
00:59:12 Found existing installation: omero-py 5.19.1
00:59:12 Uninstalling omero-py-5.19.1:
00:59:12 Successfully uninstalled omero-py-5.19.1
00:59:14 Successfully installed omero-py-5.19.2.dev0
00:59:14 + for x in *.gz
00:59:14 + pip install omero-scripts-5.8.1.dev0.tar.gz
00:59:14 Processing ./omero-scripts-5.8.1.dev0.tar.gz
00:59:14 Installing build dependencies: started
00:59:16 Installing build dependencies: finished with status 'done'
00:59:16 Getting requirements to build wheel: started
00:59:16 Getting requirements to build wheel: finished with status 'done'
00:59:16 Installing backend dependencies: started
00:59:18 Installing backend dependencies: finished with status 'done'
00:59:18 Preparing metadata (pyproject.toml): started
00:59:19 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:19 Building wheels for collected packages: omero-scripts
00:59:19 Building wheel for omero-scripts (pyproject.toml): started
00:59:19 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:59:19 Created wheel for omero-scripts: filename=omero_scripts-5.8.1.dev0-py3-none-any.whl size=116570 sha256=18516c6873b7267f6eeb7502d1dbee1558de2a8a4d9e65d6d5ee75ac8f0ee9ff
00:59:19 Stored in directory: /home/omero/.cache/pip/wheels/bf/20/bf/f0e89c5f6fcd6f4ff1c089bc6b449e017b94b2f6b6c2593196
00:59:19 Successfully built omero-scripts
00:59:19 Installing collected packages: omero-scripts
00:59:19 Successfully installed omero-scripts-5.8.1.dev0
00:59:19 + for x in *.gz
00:59:19 + pip install omero-web-5.25.1.dev0.tar.gz
00:59:20 Processing ./omero-web-5.25.1.dev0.tar.gz
00:59:20 Installing build dependencies: started
00:59:21 Installing build dependencies: finished with status 'done'
00:59:22 Getting requirements to build wheel: started
00:59:22 Getting requirements to build wheel: finished with status 'done'
00:59:22 Installing backend dependencies: started
00:59:23 Installing backend dependencies: finished with status 'done'
00:59:23 Preparing metadata (pyproject.toml): started
00:59:23 Preparing metadata (pyproject.toml): finished with status 'done'
00:59:23 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.2.dev0)
00:59:23 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
00:59:23 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
00:59:23 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
00:59:23 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
00:59:23 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
00:59:23 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
00:59:23 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
00:59:23 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:59:23 Collecting django-csp (from omero-web==5.25.1.dev0)
00:59:23 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
00:59:23 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
00:59:23 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
00:59:23 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
00:59:23 Using cached gunicorn-21.2.0-py3-none-any.whl.metadata (4.1 kB)
00:59:23 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
00:59:23 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.2.0)
00:59:23 Collecting pytz (from omero-web==5.25.1.dev0)
00:59:23 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
00:59:23 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
00:59:23 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
00:59:23 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
00:59:23 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
00:59:24 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
00:59:24 Using cached sqlparse-0.4.4-py3-none-any.whl.metadata (4.0 kB)
00:59:24 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
00:59:24 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
00:59:24 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
00:59:24 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
00:59:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
00:59:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
00:59:24 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
00:59:24 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
00:59:24 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
00:59:24 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
00:59:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6)
00:59:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
00:59:24 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:59:24 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
00:59:24 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
00:59:24 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
00:59:24 Using cached gunicorn-21.2.0-py3-none-any.whl (80 kB)
00:59:24 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
00:59:24 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
00:59:24 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
00:59:24 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
00:59:24 Using cached sqlparse-0.4.4-py3-none-any.whl (41 kB)
00:59:24 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB)
00:59:24 Building wheels for collected packages: omero-web
00:59:24 Building wheel for omero-web (pyproject.toml): started
00:59:26 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:59:27 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2770069 sha256=b05653aef98fce941e28cbe520eeace2fa7be50a005b71de9448ca5f63052024
00:59:27 Stored in directory: /home/omero/.cache/pip/wheels/27/e6/a8/3c62891eccbd4759036a66343d82d7ebc8ff45e9a0976cd8c7
00:59:27 Successfully built omero-web
00:59:27 Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
00:59:30 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-21.2.0 omero-web-5.25.1.dev0 pytz-2024.1 sqlparse-0.4.4 typing-extensions-4.10.0 whitenoise-6.6.0
00:59:30 + cd /home/omero/workspace/OMERO-training/OMERO.server
00:59:30 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
00:59:30 + HOSTNAME=d6309de3f85a
00:59:30 + PORT=4064
00:59:30 + WEBHOST=http://nginx/web
00:59:30 + SERVER_NAME=omero
00:59:30 + ROOT_PASSWORD=omero
00:59:30 + GROUP_NAME=training_group
00:59:30 + GROUP_NAME_2=training_group-2
00:59:30 + USER_NAME=training_user
00:59:30 + USER_NAME_2=training_user-2
00:59:30 + LIGHTADMIN_USER_NAME=ladmin_user
00:59:30 + USER_PASSWORD=ome
00:59:30 + CONFIG_FILENAME=training_ice.config
00:59:30 + omero login root@d6309de3f85a:4064 -w omero
00:59:31 Created session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:31 + omero group add training_group --type read-only --ignore-existing
00:59:32 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:32 Group exists: training_group (id=3)
00:59:32 + omero group add training_group-2 --type read-only --ignore-existing
00:59:33 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:33 Group exists: training_group-2 (id=4)
00:59:33 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
00:59:34 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:34 User exists: training_user (id=2)
00:59:34 + omero user joingroup --name training_user --group-name training_group training_group-2
00:59:35 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:35 2 is already in group 3
00:59:35 2 is already in group 4
00:59:35 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
00:59:36 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:36 User exists: training_user-2 (id=3)
00:59:36 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
00:59:37 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:37 3 is already in group 3
00:59:37 3 is already in group 4
00:59:37 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
00:59:38 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:38 User exists: ladmin_user (id=4)
00:59:38 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
00:59:38 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:38 4 is already in group 3
00:59:38 4 is already in group 4
00:59:39 ++ omero user info ladmin_user --style plain
00:59:39 ++ cut -d, -f1
00:59:39 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:39 + id=4
00:59:39 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
00:59:40 Using session for root@d6309de3f85a:4064. Idle timeout: 10 min. Current group: system
00:59:40 Experimenter:4
00:59:40 + omero logout
00:59:41 + touch test.fake
00:59:41 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group
00:59:42 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:42 + nProjects=1
00:59:42 + nDatasets=2
00:59:42 + echo 'Creating projects and datasets'
00:59:42 Creating projects and datasets
00:59:42 + (( i=1 ))
00:59:42 + (( i<=1 ))
00:59:42 ++ omero obj new Project 'name=Project 1'
00:59:43 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:43 + project=Project:601
00:59:43 + (( j=1 ))
00:59:43 + (( j<=2 ))
00:59:43 ++ omero obj new Dataset 'name=Dataset 1-1'
00:59:44 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:44 + dataset=Dataset:651
00:59:44 + omero obj new ProjectDatasetLink parent=Project:601 child=Dataset:651
00:59:45 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:45 ProjectDatasetLink:601
00:59:45 + echo 'Importing image into dataset'
00:59:45 Importing image into dataset
00:59:45 + omero import -d Dataset:651 test.fake --debug ERROR
00:59:46 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:46 2024-03-28 00:59:46,691 248 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
00:59:46 2024-03-28 00:59:46,706 263 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
00:59:49 Image:2851
00:59:49 Other imported objects:
00:59:49 Fileset:2201
00:59:49
00:59:49 ==> Summary
00:59:49 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.006
00:59:50 + (( j++ ))
00:59:50 + (( j<=2 ))
00:59:50 ++ omero obj new Dataset 'name=Dataset 1-2'
00:59:50 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:51 + dataset=Dataset:652
00:59:51 + omero obj new ProjectDatasetLink parent=Project:601 child=Dataset:652
00:59:51 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:51 ProjectDatasetLink:602
00:59:52 + echo 'Importing image into dataset'
00:59:52 Importing image into dataset
00:59:52 + omero import -d Dataset:652 test.fake --debug ERROR
00:59:52 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:53 2024-03-28 00:59:53,364 259 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
00:59:53 2024-03-28 00:59:53,381 276 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
00:59:55 Image:2852
00:59:55 Other imported objects:
00:59:55 Fileset:2202
00:59:55
00:59:55 ==> Summary
00:59:55 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.197
00:59:55 + (( j++ ))
00:59:55 + (( j<=2 ))
00:59:55 + (( i++ ))
00:59:55 + (( i<=1 ))
00:59:55 + (( j=1 ))
00:59:55 + (( j<=2 ))
00:59:55 + omero obj new Dataset 'name=Orphaned dataset 1'
00:59:56 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:56 Dataset:653
00:59:56 + (( j++ ))
00:59:56 + (( j<=2 ))
00:59:56 + omero obj new Dataset 'name=Orphaned dataset 2'
00:59:57 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
00:59:57 Dataset:654
00:59:57 + (( j++ ))
00:59:57 + (( j<=2 ))
00:59:57 + echo 'Importing image file'
00:59:57 Importing image file
00:59:57 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
00:59:57 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:00:02 ++ sed -n -e 's/^Image://p' image_import.log
01:00:02 + imageid=2853
01:00:02 ++ omero obj new MapAnnotation
01:00:02 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:03 + MAP=MapAnnotation:1901
01:00:03 + omero obj map-set MapAnnotation:1901 mapValue testkey testvalue
01:00:03 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:04 MapAnnotation:1901
01:00:04 + omero obj new ImageAnnotationLink parent=Image:2853 child=MapAnnotation:1901
01:00:05 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:05 ImageAnnotationLink:901
01:00:05 ++ omero obj new Screen name=Screen
01:00:05 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:06 + screen=Screen:501
01:00:06 ++ omero obj new Plate name=Plate
01:00:06 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:06 + plate=Plate:601
01:00:06 + omero obj new ScreenPlateLink parent=Screen:501 child=Plate:601
01:00:07 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:07 ScreenPlateLink:501
01:00:07 + echo 'Importing SPW file'
01:00:07 Importing SPW file
01:00:07 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:00:07 + omero import -r Screen:501 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:00:13 ++ sed -n -e 's/^Plate://p' plate_import.log
01:00:13 + plateid=602
01:00:13 + omero logout
01:00:14 + omero login training_user-2@d6309de3f85a:4064 -w ome -g training_group
01:00:15 Created session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:15 + omero obj new Project 'name=Project 0'
01:00:16 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:16 Project:602
01:00:16 + omero obj new Dataset 'name=Dataset 0'
01:00:17 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:17 Dataset:655
01:00:17 + omero import test.fake --debug ERROR
01:00:18 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:18 2024-03-28 01:00:18,939 247 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:00:18 2024-03-28 01:00:18,954 262 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
01:00:20 Image:2857
01:00:20 Other imported objects:
01:00:20 Fileset:2205
01:00:20
01:00:20 ==> Summary
01:00:20 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.774
01:00:21 + omero obj new Screen name=Screen
01:00:21 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:21 Screen:502
01:00:21 + omero obj new Plate name=Plate
01:00:22 Using session for training_user-2@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group
01:00:22 Plate:603
01:00:22 + omero login training_user@d6309de3f85a:4064 -w ome -g training_group-2
01:00:23 Created session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:23 + omero obj new Project 'name=Project 0'
01:00:24 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:24 Project:603
01:00:24 + omero obj new Dataset 'name=Dataset 0'
01:00:25 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:25 Dataset:656
01:00:25 + omero import test.fake --debug ERROR
01:00:26 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:26 2024-03-28 01:00:26,721 257 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.3-SNAPSHOT
01:00:26 2024-03-28 01:00:26,736 272 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 557e9664b3df8ff628453442d6ed95dc89332a56 date: 28 March 2024
01:00:28 Image:2858
01:00:28 Other imported objects:
01:00:28 Fileset:2206
01:00:28
01:00:28 ==> Summary
01:00:28 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:00.803
01:00:28 + omero obj new Screen name=Screen
01:00:29 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:29 Screen:503
01:00:29 + omero obj new Plate name=Plate
01:00:30 Using session for training_user@d6309de3f85a:4064. Idle timeout: 10 min. Current group: training_group-2
01:00:30 Plate:604
01:00:30 + omero logout
01:00:31 + echo omero.host=d6309de3f85a
01:00:31 + echo omero.port=4064
01:00:31 + echo omero.webhost=http://nginx/web
01:00:31 + echo omero.servername=omero
01:00:31 + echo omero.user=training_user
01:00:31 + echo omero.pass=ome
01:00:31 + echo omero.group=training_group
01:00:31 + echo omero.projectid=601
01:00:31 + echo omero.datasetid=652
01:00:31 + echo omero.imageid=2853
01:00:31 + echo omero.plateid=602
01:00:31 + echo omero.screenid=501
01:00:31 + echo omero.group2=training_group-2
01:00:31 + echo omero.ladmin=ladmin_user
01:00:31 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:00:31 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:00:31 + omero sessions clear
01:00:32 1 session(s) cleared
01:00:32 !! 03/28/24 01:00:32.370 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:32 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:00:32 + pip install --upgrade requests
01:00:32 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.31.0)
01:00:32 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
01:00:32 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.6)
01:00:32 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
01:00:32 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.2.2)
01:00:33 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:00:40 Running training suite
01:00:40 created 20 shapes
01:00:40 retrieved 20 shapes in 4 batches
01:00:40 Current user:
01:00:40 ID: 2
01:00:40 Username: training_user
01:00:40 Full Name: training_user training_user
01:00:40 Is Admin: False
01:00:40 []
01:00:40 Member of:
01:00:40 ID: 3 Name: training_group
01:00:40 ID: 4 Name: training_group-2
01:00:40 Current group: training_group
01:00:40 Group owners:
01:00:40 Group members:
01:00:40 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:40 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:00:40 ID: 2 UserName: training_user Name: training_user training_user
01:00:40 Owner of:
01:00:40 Admins:
01:00:40 ID: 0 UserName: root Name: root root
01:00:40 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:00:40 ID: 107 UserName: <hidden> Name: <hidden> <hidden>
01:00:40 ID: 119 UserName: <hidden> Name: <hidden> <hidden>
01:00:40 ID: 113 UserName: <hidden> Name: <hidden> <hidden>
01:00:40 Created new Image:2859 Name:"numpy image"
01:00:40 newPlane for z,t: 0 0 uint8 0 127
01:00:40 newPlane for z,t: 0 1 uint8 0 127
01:00:40 newPlane for z,t: 0 2 uint8 0 127
01:00:40 newPlane for z,t: 0 3 uint8 0 127
01:00:40 newPlane for z,t: 0 4 uint8 0 127
01:00:40 newPlane for z,t: 0 5 uint8 0 127
01:00:40 newPlane for z,t: 0 6 uint8 0 127
01:00:40 newPlane for z,t: 0 7 uint8 0 127
01:00:40 newPlane for z,t: 0 8 uint8 0 127
01:00:40 newPlane for z,t: 0 9 uint8 0 127
01:00:40 newPlane for z,t: 1 0 uint8 0 127
01:00:40 newPlane for z,t: 1 1 uint8 0 127
01:00:40 newPlane for z,t: 1 2 uint8 0 127
01:00:40 newPlane for z,t: 1 3 uint8 0 127
01:00:40 newPlane for z,t: 1 4 uint8 0 127
01:00:40 newPlane for z,t: 1 5 uint8 0 127
01:00:40 newPlane for z,t: 1 6 uint8 0 127
01:00:40 newPlane for z,t: 1 7 uint8 0 127
01:00:40 newPlane for z,t: 1 8 uint8 0 127
01:00:40 newPlane for z,t: 1 9 uint8 0 127
01:00:40 newPlane for z,t: 2 0 uint8 0 127
01:00:40 newPlane for z,t: 2 1 uint8 0 127
01:00:40 newPlane for z,t: 2 2 uint8 0 127
01:00:40 newPlane for z,t: 2 3 uint8 0 127
01:00:40 newPlane for z,t: 2 4 uint8 0 127
01:00:40 newPlane for z,t: 2 5 uint8 0 127
01:00:40 newPlane for z,t: 2 6 uint8 0 127
01:00:40 newPlane for z,t: 2 7 uint8 0 127
01:00:40 newPlane for z,t: 2 8 uint8 0 127
01:00:40 newPlane for z,t: 2 9 uint8 0 127
01:00:40 newPlane for z,t: 3 0 uint8 0 127
01:00:40 newPlane for z,t: 3 1 uint8 0 127
01:00:40 newPlane for z,t: 3 2 uint8 0 127
01:00:40 newPlane for z,t: 3 3 uint8 0 127
01:00:40 newPlane for z,t: 3 4 uint8 0 127
01:00:40 newPlane for z,t: 3 5 uint8 0 127
01:00:40 newPlane for z,t: 3 6 uint8 0 127
01:00:40 newPlane for z,t: 3 7 uint8 0 127
01:00:40 newPlane for z,t: 3 8 uint8 0 127
01:00:40 newPlane for z,t: 3 9 uint8 0 127
01:00:40 newPlane for z,t: 4 0 uint8 0 127
01:00:40 newPlane for z,t: 4 1 uint8 0 127
01:00:40 newPlane for z,t: 4 2 uint8 0 127
01:00:40 newPlane for z,t: 4 3 uint8 0 127
01:00:40 newPlane for z,t: 4 4 uint8 0 127
01:00:40 newPlane for z,t: 4 5 uint8 0 127
01:00:40 newPlane for z,t: 4 6 uint8 0 127
01:00:40 newPlane for z,t: 4 7 uint8 0 127
01:00:40 newPlane for z,t: 4 8 uint8 0 127
01:00:40 newPlane for z,t: 4 9 uint8 0 127
01:00:40 Deleting, please wait.
01:00:40 Error? False
01:00:40 2853 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:40 training_user_2/Blitz-0-Ice.ThreadPool.Server-9/2024-03/28/01-00-00.297/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:40 1
01:00:40 training_user_2/Blitz-0-Ice.ThreadPool.Server-9/2024-03/28/01-00-00.297/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:40 Current group: training_group
01:00:40 Permissions: READ-ONLY (rwr---)
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 1 Owner: training_user training_user
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Project 0 Owner: training_user-2 training_user-2
01:00:40 Image: <_ImageWrapper id=2853>
01:00:40 Image: <_ImageWrapper id=2853> Group: training_group 3
01:00:40 Image: <_ImageWrapper id=2853> Channel: 0
01:00:40 Channel: 1
01:00:40 Channel: 2
01:00:40
01:00:40
01:00:40 original_metadata
01:00:40 global_metadata
01:00:40 series_metadata
01:00:40
01:00:40 Plane at zct: 0 0 0
01:00:40 [[ 0 0 0 ... 253 254 255]
01:00:40 [ 0 0 0 ... 253 254 255]
01:00:40 [ 0 0 0 ... 253 254 255]
01:00:40 ...
01:00:40 [ 0 1 2 ... 253 254 255]
01:00:40 [ 0 1 2 ... 253 254 255]
01:00:40 [ 0 1 2 ... 253 254 255]]
01:00:40 shape: (512, 512)
01:00:40 min: 0 max: 255 pixel type: uint8
01:00:40
01:00:40 Z stack of tiles:
01:00:40 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:40 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:40 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:40 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:40 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:00:40
01:00:40 Hyper stack of planes:
01:00:40 plane zct: (2, 0, 0) min: 0 max: 255
01:00:40 plane zct: (2, 0, 1) min: 0 max: 255
01:00:40 plane zct: (2, 0, 2) min: 0 max: 255
01:00:40 plane zct: (2, 0, 3) min: 0 max: 255
01:00:40 plane zct: (2, 0, 4) min: 0 max: 255
01:00:40 plane zct: (2, 0, 5) min: 0 max: 255
01:00:40 plane zct: (2, 0, 6) min: 0 max: 255
01:00:40 plane zct: (2, 0, 7) min: 0 max: 255
01:00:40 plane zct: (2, 0, 8) min: 0 max: 255
01:00:40 plane zct: (2, 0, 9) min: 0 max: 255
01:00:40 plane zct: (2, 1, 0) min: 0 max: 255
01:00:40 plane zct: (2, 1, 1) min: 0 max: 255
01:00:40 plane zct: (2, 1, 2) min: 0 max: 255
01:00:40 plane zct: (2, 1, 3) min: 0 max: 255
01:00:40 plane zct: (2, 1, 4) min: 0 max: 255
01:00:40 plane zct: (2, 1, 5) min: 0 max: 255
01:00:40 plane zct: (2, 1, 6) min: 0 max: 255
01:00:40 plane zct: (2, 1, 7) min: 0 max: 255
01:00:40 plane zct: (2, 1, 8) min: 0 max: 255
01:00:40 plane zct: (2, 1, 9) min: 0 max: 255
01:00:40 plane zct: (2, 2, 0) min: 0 max: 255
01:00:40 plane zct: (2, 2, 1) min: 0 max: 255
01:00:40 plane zct: (2, 2, 2) min: 0 max: 255
01:00:40 plane zct: (2, 2, 3) min: 0 max: 255
01:00:40 plane zct: (2, 2, 4) min: 0 max: 255
01:00:40 plane zct: (2, 2, 5) min: 0 max: 255
01:00:40 plane zct: (2, 2, 6) min: 0 max: 255
01:00:40 plane zct: (2, 2, 7) min: 0 max: 255
01:00:40 plane zct: (2, 2, 8) min: 0 max: 255
01:00:40 plane zct: (2, 2, 9) min: 0 max: 255
01:00:40 plane zct: (3, 0, 0) min: 0 max: 255
01:00:40 plane zct: (3, 0, 1) min: 0 max: 255
01:00:40 plane zct: (3, 0, 2) min: 0 max: 255
01:00:40 plane zct: (3, 0, 3) min: 0 max: 255
01:00:40 plane zct: (3, 0, 4) min: 0 max: 255
01:00:40 plane zct: (3, 0, 5) min: 0 max: 255
01:00:40 plane zct: (3, 0, 6) min: 0 max: 255
01:00:40 plane zct: (3, 0, 7) min: 0 max: 255
01:00:40 plane zct: (3, 0, 8) min: 0 max: 255
01:00:40 plane zct: (3, 0, 9) min: 0 max: 255
01:00:40 plane zct: (3, 1, 0) min: 0 max: 255
01:00:40 plane zct: (3, 1, 1) min: 0 max: 255
01:00:40 plane zct: (3, 1, 2) min: 0 max: 255
01:00:40 plane zct: (3, 1, 3) min: 0 max: 255
01:00:40 plane zct: (3, 1, 4) min: 0 max: 255
01:00:40 plane zct: (3, 1, 5) min: 0 max: 255
01:00:40 plane zct: (3, 1, 6) min: 0 max: 255
01:00:40 plane zct: (3, 1, 7) min: 0 max: 255
01:00:40 plane zct: (3, 1, 8) min: 0 max: 255
01:00:40 plane zct: (3, 1, 9) min: 0 max: 255
01:00:40 plane zct: (3, 2, 0) min: 0 max: 255
01:00:40 plane zct: (3, 2, 1) min: 0 max: 255
01:00:40 plane zct: (3, 2, 2) min: 0 max: 255
01:00:40 plane zct: (3, 2, 3) min: 0 max: 255
01:00:40 plane zct: (3, 2, 4) min: 0 max: 255
01:00:40 plane zct: (3, 2, 5) min: 0 max: 255
01:00:40 plane zct: (3, 2, 6) min: 0 max: 255
01:00:40 plane zct: (3, 2, 7) min: 0 max: 255
01:00:40 plane zct: (3, 2, 8) min: 0 max: 255
01:00:40 plane zct: (3, 2, 9) min: 0 max: 255
01:00:40 plane zct: (4, 0, 0) min: 0 max: 255
01:00:40 plane zct: (4, 0, 1) min: 0 max: 255
01:00:40 plane zct: (4, 0, 2) min: 0 max: 255
01:00:40 plane zct: (4, 0, 3) min: 0 max: 255
01:00:40 plane zct: (4, 0, 4) min: 0 max: 255
01:00:40 plane zct: (4, 0, 5) min: 0 max: 255
01:00:40 plane zct: (4, 0, 6) min: 0 max: 255
01:00:40 plane zct: (4, 0, 7) min: 0 max: 255
01:00:40 plane zct: (4, 0, 8) min: 0 max: 255
01:00:40 plane zct: (4, 0, 9) min: 0 max: 255
01:00:40 plane zct: (4, 1, 0) min: 0 max: 255
01:00:40 plane zct: (4, 1, 1) min: 0 max: 255
01:00:40 plane zct: (4, 1, 2) min: 0 max: 255
01:00:40 plane zct: (4, 1, 3) min: 0 max: 255
01:00:40 plane zct: (4, 1, 4) min: 0 max: 255
01:00:40 plane zct: (4, 1, 5) min: 0 max: 255
01:00:40 plane zct: (4, 1, 6) min: 0 max: 255
01:00:40 plane zct: (4, 1, 7) min: 0 max: 255
01:00:40 plane zct: (4, 1, 8) min: 0 max: 255
01:00:40 plane zct: (4, 1, 9) min: 0 max: 255
01:00:40 plane zct: (4, 2, 0) min: 0 max: 255
01:00:40 plane zct: (4, 2, 1) min: 0 max: 255
01:00:40 plane zct: (4, 2, 2) min: 0 max: 255
01:00:40 plane zct: (4, 2, 3) min: 0 max: 255
01:00:40 plane zct: (4, 2, 4) min: 0 max: 255
01:00:40 plane zct: (4, 2, 5) min: 0 max: 255
01:00:40 plane zct: (4, 2, 6) min: 0 max: 255
01:00:41 plane zct: (4, 2, 7) min: 0 max: 255
01:00:41 plane zct: (4, 2, 8) min: 0 max: 255
01:00:41 plane zct: (4, 2, 9) min: 0 max: 255
01:00:41 {0: [1514, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1014, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024, 1024]}
01:00:41
01:00:41 List Projects:
01:00:41 ==================================================
01:00:41 Project:1 Name:"Project 1" (owner=training_user)
01:00:41 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:00:41 Image:1 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:00:41 Image:12 Name:"New Image" (owner=training_user)
01:00:41 Image:13 Name:"newImageFrom3" (owner=training_user)
01:00:41 Image:2 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:7 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:17 Name:"new Name 1" (owner=training_user)
01:00:41 Dataset:18 Name:"new Name 2" (owner=training_user)
01:00:41 Project:51 Name:"Project 1" (owner=training_user)
01:00:41 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
01:00:41 Image:51 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
01:00:41 Image:62 Name:"New Image" (owner=training_user)
01:00:41 Image:63 Name:"newImageFrom53" (owner=training_user)
01:00:41 Image:52 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:57 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:67 Name:"new Name 1" (owner=training_user)
01:00:41 Dataset:68 Name:"new Name 2" (owner=training_user)
01:00:41 Project:101 Name:"Project 1" (owner=training_user)
01:00:41 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
01:00:41 Image:101 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
01:00:41 Image:112 Name:"New Image" (owner=training_user)
01:00:41 Image:113 Name:"newImageFrom103" (owner=training_user)
01:00:41 Image:102 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:107 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:117 Name:"new Name 1" (owner=training_user)
01:00:41 Dataset:118 Name:"new Name 2" (owner=training_user)
01:00:41 Project:151 Name:"Project 1" (owner=training_user)
01:00:41 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
01:00:41 Image:151 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
01:00:41 Image:162 Name:"New Image" (owner=training_user)
01:00:41 Image:163 Name:"newImageFrom153" (owner=training_user)
01:00:41 Image:152 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:157 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:167 Name:"new Name 1" (owner=training_user)
01:00:41 Dataset:168 Name:"new Name 2" (owner=training_user)
01:00:41 Project:301 Name:"Project 1" (owner=training_user)
01:00:41 Dataset:351 Name:"Dataset 1-1" (owner=training_user)
01:00:41 Image:2551 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:352 Name:"Dataset 1-2" (owner=training_user)
01:00:41 Image:2562 Name:"New Image" (owner=training_user)
01:00:41 Image:2563 Name:"newImageFrom2553" (owner=training_user)
01:00:41 Image:2552 Name:"test.fake" (owner=training_user)
01:00:41 Dataset:357 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:367 Name:"new Name 1" (owner=training_user)
01:00:41 Dataset:368 Name:"new Name 2" (owner=training_user)
01:00:41
01:00:41 List orphaned Datasets:
01:00:41 ==================================================
01:00:41 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:00:41 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:00:41 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:00:41 Dataset:8 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:9 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:10 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:11 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:12 Name:"New Dataset2" (owner=training_user)
01:00:41 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
01:00:41 Dataset:14 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:15 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:16 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
01:00:41 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
01:00:41 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
01:00:41 Dataset:58 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:59 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:60 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:61 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:62 Name:"New Dataset2" (owner=training_user)
01:00:41 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
01:00:41 Dataset:64 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:65 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:66 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
01:00:41 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
01:00:41 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
01:00:41 Dataset:108 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:109 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:110 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:111 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:112 Name:"New Dataset2" (owner=training_user)
01:00:41 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
01:00:41 Dataset:114 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:115 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:116 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
01:00:41 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
01:00:41 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
01:00:41 Dataset:158 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:159 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:160 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:161 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:162 Name:"New Dataset2" (owner=training_user)
01:00:41 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
01:00:41 Dataset:164 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:165 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:166 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:353 Name:"Orphaned dataset 1" (owner=training_user)
01:00:41 Dataset:354 Name:"Orphaned dataset 2" (owner=training_user)
01:00:41 Dataset:355 Name:"Dataset 0" (owner=training_user-2)
01:00:41 Dataset:358 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:359 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:360 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:361 Name:"New Dataset" (owner=training_user)
01:00:41 Dataset:362 Name:"New Dataset2" (owner=training_user)
01:00:41 Dataset:363 Name:"FileAnnotationDelete" (owner=training_user)
01:00:41 Dataset:364 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:365 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:366 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:403 Name:"Orphaned dataset 1" (owner=training_user)
01:00:41 Dataset:404 Name:"Orphaned dataset 2" (owner=training_user)
01:00:41 Dataset:405 Name:"Dataset 0" (owner=training_user-2)
01:00:41 Dataset:408 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:409 Name:"MyDataset" (owner=training_user)
01:00:41 Dataset:410 Name:"MyDataset" (owner=training_user)
01:00:42 <string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
01:00:43 Dataset:411 Name:"New Dataset" (owner=training_user)
01:00:43 Dataset:412 Name:"New Dataset2" (owner=training_user)
01:00:43 Dataset:413 Name:"FileAnnotationDelete" (owner=training_user)
01:00:43 Dataset:414 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:415 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:416 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:453 Name:"Orphaned dataset 1" (owner=training_user)
01:00:43 Dataset:454 Name:"Orphaned dataset 2" (owner=training_user)
01:00:43 Dataset:455 Name:"Dataset 0" (owner=training_user-2)
01:00:43 Dataset:458 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:459 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:460 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:461 Name:"New Dataset" (owner=training_user)
01:00:43 Dataset:462 Name:"New Dataset2" (owner=training_user)
01:00:43 Dataset:463 Name:"FileAnnotationDelete" (owner=training_user)
01:00:43 Dataset:464 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:465 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:466 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:503 Name:"Orphaned dataset 1" (owner=training_user)
01:00:43 Dataset:504 Name:"Orphaned dataset 2" (owner=training_user)
01:00:43 Dataset:505 Name:"Dataset 0" (owner=training_user-2)
01:00:43 Dataset:508 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:509 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:510 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:511 Name:"New Dataset" (owner=training_user)
01:00:43 Dataset:512 Name:"New Dataset2" (owner=training_user)
01:00:43 Dataset:513 Name:"FileAnnotationDelete" (owner=training_user)
01:00:43 Dataset:514 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:515 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:516 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:553 Name:"Orphaned dataset 1" (owner=training_user)
01:00:43 Dataset:554 Name:"Orphaned dataset 2" (owner=training_user)
01:00:43 Dataset:555 Name:"Dataset 0" (owner=training_user-2)
01:00:43 Dataset:558 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:559 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:560 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:561 Name:"New Dataset" (owner=training_user)
01:00:43 Dataset:562 Name:"New Dataset2" (owner=training_user)
01:00:43 Dataset:563 Name:"FileAnnotationDelete" (owner=training_user)
01:00:43 Dataset:564 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:565 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:566 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:603 Name:"Orphaned dataset 1" (owner=training_user)
01:00:43 Dataset:604 Name:"Orphaned dataset 2" (owner=training_user)
01:00:43 Dataset:605 Name:"Dataset 0" (owner=training_user-2)
01:00:43 Dataset:608 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:609 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:610 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:611 Name:"New Dataset" (owner=training_user)
01:00:43 Dataset:612 Name:"New Dataset2" (owner=training_user)
01:00:43 Dataset:613 Name:"FileAnnotationDelete" (owner=training_user)
01:00:43 Dataset:614 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:615 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:616 Name:"MyDataset" (owner=training_user)
01:00:43 Dataset:653 Name:"Orphaned dataset 1" (owner=training_user)
01:00:43 Dataset:654 Name:"Orphaned dataset 2" (owner=training_user)
01:00:43 Dataset:655 Name:"Dataset 0" (owner=training_user-2)
01:00:43
01:00:43 Images in Dataset: 652
01:00:43 ==================================================
01:00:43 Image:2852 Name:"test.fake" (owner=training_user)
01:00:43
01:00:43 Image:2853
01:00:43 ==================================================
01:00:43 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:43 X: 512
01:00:43 Y: 512
01:00:43 Z: 5
01:00:43 C: 3
01:00:43 T: 10
01:00:43 Channel: 0 Color: (255, 0, 0)
01:00:43 Lookup table: None
01:00:43 Is reverse intensity? False
01:00:43 Channel: 1 Color: (0, 255, 0)
01:00:43 Lookup table: None
01:00:43 Is reverse intensity? False
01:00:43 Channel: 2 Color: (0, 0, 255)
01:00:43 Lookup table: None
01:00:43 Is reverse intensity? False
01:00:43 Pixel Size X: None
01:00:43
01:00:43 List Screens:
01:00:43 ==================================================
01:00:43 Screen:501 Name:"Screen" (owner=training_user)
01:00:43 Plate:601 Name:"Plate" (owner=training_user)
01:00:43 Plate:602 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:451 Name:"Screen" (owner=training_user)
01:00:43 Plate:551 Name:"Plate" (owner=training_user)
01:00:43 Plate:552 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:401 Name:"Screen" (owner=training_user)
01:00:43 Plate:501 Name:"Plate" (owner=training_user)
01:00:43 Plate:502 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:351 Name:"Screen" (owner=training_user)
01:00:43 Plate:451 Name:"Plate" (owner=training_user)
01:00:43 Plate:452 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:301 Name:"Screen" (owner=training_user)
01:00:43 Plate:401 Name:"Plate" (owner=training_user)
01:00:43 Plate:402 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:251 Name:"Screen" (owner=training_user)
01:00:43 Plate:351 Name:"Plate" (owner=training_user)
01:00:43 Plate:352 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:201 Name:"Screen" (owner=training_user)
01:00:43 Plate:301 Name:"Plate" (owner=training_user)
01:00:43 Plate:302 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:151 Name:"Screen" (owner=training_user)
01:00:43 Plate:151 Name:"Plate" (owner=training_user)
01:00:43 Plate:152 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:101 Name:"Screen" (owner=training_user)
01:00:43 Plate:101 Name:"Plate" (owner=training_user)
01:00:43 Plate:102 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:51 Name:"Screen" (owner=training_user)
01:00:43 Plate:51 Name:"Plate" (owner=training_user)
01:00:43 Plate:52 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:1 Name:"Screen" (owner=training_user)
01:00:43 Plate:1 Name:"Plate" (owner=training_user)
01:00:43 Plate:2 Name:"Plate Name 0" (owner=training_user)
01:00:43 Screen:502 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:452 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:402 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:352 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:302 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:252 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:202 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:152 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:102 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:52 Name:"Screen" (owner=training_user-2)
01:00:43 Screen:2 Name:"Screen" (owner=training_user-2)
01:00:43
01:00:43 Plate:602
01:00:43 ==================================================
01:00:43
01:00:43 Number of fields: (0, 0)
01:00:43
01:00:43 Grid size: {'rows': 1, 'columns': 3}
01:00:43
01:00:43 Wells in Plate: Plate Name 0
01:00:43 Well: 0 0 Fields: 1
01:00:43 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 2854
01:00:43 Well: 0 1 Fields: 1
01:00:43 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 2855
01:00:43 Well: 0 2 Fields: 1
01:00:43 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 2856
01:00:43 1901 <class 'omero.model.MapAnnotationI'>
01:00:43 added by training_user
01:00:43 Image ID: 2853
01:00:43 Annotation ID: 1901
01:00:43 2853
01:00:43 Channel rendering settings:
01:00:43 Name: 0
01:00:43 Color: FF0000
01:00:43 Active: True
01:00:43 Levels: 0.0 - 255.0
01:00:43 Name: 1
01:00:43 Color: 00FF00
01:00:43 Active: True
01:00:43 Levels: 0.0 - 255.0
01:00:43 Name: 2
01:00:43 Color: 0000FF
01:00:43 Active: True
01:00:43 Levels: 0.0 - 255.0
01:00:43 isGreyscaleRenderingModel: False
01:00:43 Default Z/T positions:
01:00:43 Z = 2, T = 0
01:00:43 Rendering Defs on Image:
01:00:43 ID: 2803 (owner: training_user training_user)
01:00:43 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:00:43 ROI: ID: 502
01:00:43 Shape: id 521 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:00:43 Shape: id 522 theT 0 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:00:43 ROI: ID: 503
01:00:43 Shape: id 523 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:00:43 ROI: ID: 504
01:00:43 Shape: id 524 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:00:43 ROI: ID: 505
01:00:43 Shape: id 525 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:00:43 ROI: ID: 506
01:00:43 <class 'omero.model.PolygonI'> Not supported by this code
01:00:43 Shape: id 526 theT 0 theZ 2 textValue test-Polygon
01:00:43 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:00:43 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:00:43 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:00:43 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:00:43 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:00:43 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:00:48 Removing Shape from ROI...
01:00:48 Deleting ROI: 507
01:00:48 Table Columns:
01:00:48 Uid
01:00:48 MyStringColumnInit
01:00:48 Row count: 10
01:00:48
01:00:48 Get All Data for rows: [3, 5, 7]
01:00:48 Data for Column: Uid
01:00:48 1
01:00:48 2
01:00:48 3
01:00:48 4
01:00:48 5
01:00:48 6
01:00:48 7
01:00:48 8
01:00:48 9
01:00:48 10
01:00:48 Data for Column: MyStringColumnInit
01:00:48 one
01:00:48 two
01:00:48 three
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48 eight
01:00:48 nine
01:00:48 ten
01:00:48
01:00:48 Get All Data for rows with slice: [3, 5, 7]
01:00:48 Data for Column: Uid
01:00:48 4
01:00:48 6
01:00:48 8
01:00:48 Data for Column: MyStringColumnInit
01:00:48 four
01:00:48 six
01:00:48 eight
01:00:48
01:00:48 Get Data for cols: [1] and between rows: 3 - 7
01:00:48 Data for Column: MyStringColumnInit
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48
01:00:48 Get Data for cols: [1] and between rows: 3 - 7 with slice
01:00:48 Data for Column: MyStringColumnInit
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48 Query Results for Column: Uid
01:00:48 3
01:00:48 4
01:00:48 5
01:00:48 6
01:00:48 7
01:00:48 8
01:00:48 Query Results for Column: MyStringColumnInit
01:00:48 three
01:00:48 four
01:00:48 five
01:00:48 six
01:00:48 seven
01:00:48 eight
01:00:48 Opened table with row-count: 10
01:00:48 New dataset, Id: 657
01:00:48 {'TagAnnotation': 1, 'FileAnnotation': 0, 'CommentAnnotation': 0, 'LongAnnotation': 0, 'MapAnnotation': 1, 'OtherAnnotation': 0}
01:00:48 1905 <class 'omero.model.TagAnnotationI'> added by training_user
01:00:48 Tag value: New Tag
01:00:48 1906 <class 'omero.model.MapAnnotationI'> added by training_user
01:00:48
01:00:48 Creating an OriginalFile and FileAnnotation
01:00:48 Attaching FileAnnotation to Dataset: File ID: 1907 , README.txt Size: 15
01:00:48
01:00:48 Annotations on Dataset: New Dataset
01:00:48 File ID: 8997 README.txt Size: 15
01:00:48
01:00:48 Downloading file to /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/download/README.txt ...
01:00:48 File downloaded!
01:00:48 1507 README.txt
01:00:48 57 README.txt
01:00:48 1557 README.txt
01:00:48 1607 README.txt
01:00:48 7 README.txt
01:00:48 107 README.txt
01:00:48 157 README.txt
01:00:48 1407 README.txt
01:00:48 1457 README.txt
01:00:48 1907 README.txt
01:00:48 1657 README.txt
01:00:48 Found Annotation with namespace: imperial.training.demo
01:00:48 Plane: 0 0 0
01:00:48 Applying channel Names: ['0', '1', '2'] Colors: [(255, 0, 0), (0, 255, 0), (0, 0, 255)]
01:00:48 [(0.0, 255.0), (0.0, 255.0), (0.0, 255.0)]
01:00:48
01:00:48 List Datasets:
01:00:48 ID: 8 Name: MyDataset
01:00:48 ID: 9 Name: MyDataset
01:00:48 ID: 10 Name: MyDataset
01:00:48 ID: 14 Name: MyDataset
01:00:48 ID: 15 Name: MyDataset
01:00:48 ID: 16 Name: MyDataset
01:00:48 ID: 58 Name: MyDataset
01:00:48 ID: 59 Name: MyDataset
01:00:48 ID: 60 Name: MyDataset
01:00:48 ID: 64 Name: MyDataset
01:00:48 ID: 65 Name: MyDataset
01:00:48 ID: 66 Name: MyDataset
01:00:48 ID: 108 Name: MyDataset
01:00:48 ID: 109 Name: MyDataset
01:00:48 ID: 110 Name: MyDataset
01:00:48 ID: 114 Name: MyDataset
01:00:48 ID: 115 Name: MyDataset
01:00:48 ID: 116 Name: MyDataset
01:00:48 ID: 158 Name: MyDataset
01:00:48 ID: 159 Name: MyDataset
01:00:48 ID: 160 Name: MyDataset
01:00:48 ID: 164 Name: MyDataset
01:00:48 ID: 165 Name: MyDataset
01:00:48 ID: 166 Name: MyDataset
01:00:48 ID: 358 Name: MyDataset
01:00:48 ID: 359 Name: MyDataset
01:00:48 ID: 360 Name: MyDataset
01:00:48 ID: 364 Name: MyDataset
01:00:48 ID: 365 Name: MyDataset
01:00:48 ID: 366 Name: MyDataset
01:00:48 ID: 408 Name: MyDataset
01:00:48 ID: 409 Name: MyDataset
01:00:48 ID: 410 Name: MyDataset
01:00:48 ID: 414 Name: MyDataset
01:00:48 ID: 415 Name: MyDataset
01:00:48 ID: 416 Name: MyDataset
01:00:48 ID: 458 Name: MyDataset
01:00:48 ID: 459 Name: MyDataset
01:00:48 ID: 460 Name: MyDataset
01:00:48 ID: 464 Name: MyDataset
01:00:48 ID: 465 Name: MyDataset
01:00:48 ID: 466 Name: MyDataset
01:00:48 ID: 508 Name: MyDataset
01:00:48 ID: 509 Name: MyDataset
01:00:48 ID: 510 Name: MyDataset
01:00:48 ID: 514 Name: MyDataset
01:00:48 ID: 515 Name: MyDataset
01:00:48 ID: 516 Name: MyDataset
01:00:48 ID: 558 Name: MyDataset
01:00:48 ID: 559 Name: MyDataset
01:00:48 ID: 560 Name: MyDataset
01:00:48 ID: 564 Name: MyDataset
01:00:48 ID: 565 Name: MyDataset
01:00:48 ID: 566 Name: MyDataset
01:00:48 ID: 608 Name: MyDataset
01:00:48 ID: 609 Name: MyDataset
01:00:48 ID: 610 Name: MyDataset
01:00:48 ID: 614 Name: MyDataset
01:00:48 ID: 615 Name: MyDataset
01:00:48 ID: 616 Name: MyDataset
01:00:48 ID: 658 Name: MyDataset
01:00:48 ID: 659 Name: MyDataset
01:00:48 ID: 660 Name: MyDataset
01:00:48
01:00:48 List Tags:
01:00:48 ID: 8 Text: MyTag Desc: MyTag 0
01:00:48 ID: 9 Text: MyTag Desc: MyTag 1
01:00:48 ID: 10 Text: MyTag Desc: MyTag 2
01:00:48 ID: 16 Text: MyTag Desc: MyTag 0
01:00:48 ID: 17 Text: MyTag Desc: MyTag 1
01:00:48 ID: 18 Text: MyTag Desc: MyTag 2
01:00:48 ID: 58 Text: MyTag Desc: MyTag 0
01:00:48 ID: 59 Text: MyTag Desc: MyTag 1
01:00:48 ID: 60 Text: MyTag Desc: MyTag 2
01:00:48 ID: 66 Text: MyTag Desc: MyTag 0
01:00:48 ID: 67 Text: MyTag Desc: MyTag 1
01:00:48 ID: 68 Text: MyTag Desc: MyTag 2
01:00:48 ID: 108 Text: MyTag Desc: MyTag 0
01:00:48 ID: 109 Text: MyTag Desc: MyTag 1
01:00:48 ID: 110 Text: MyTag Desc: MyTag 2
01:00:48 ID: 116 Text: MyTag Desc: MyTag 0
01:00:48 ID: 117 Text: MyTag Desc: MyTag 1
01:00:48 ID: 118 Text: MyTag Desc: MyTag 2
01:00:48 ID: 158 Text: MyTag Desc: MyTag 0
01:00:48 ID: 159 Text: MyTag Desc: MyTag 1
01:00:48 ID: 160 Text: MyTag Desc: MyTag 2
01:00:48 ID: 166 Text: MyTag Desc: MyTag 0
01:00:48 ID: 167 Text: MyTag Desc: MyTag 1
01:00:48 ID: 168 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1408 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1409 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1410 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1416 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1417 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1418 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1458 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1459 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1460 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1466 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1467 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1468 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1508 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1509 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1510 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1516 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1517 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1518 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1558 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1559 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1560 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1566 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1567 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1568 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1608 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1609 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1610 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1616 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1617 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1618 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1658 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1659 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1660 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1666 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1667 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1668 Text: MyTag Desc: MyTag 2
01:00:48 ID: 1908 Text: MyTag Desc: MyTag 0
01:00:48 ID: 1909 Text: MyTag Desc: MyTag 1
01:00:48 ID: 1910 Text: MyTag Desc: MyTag 2
01:00:48 New dataset, Id: 661
01:00:48 New dataset 2, Id: 662
01:00:48 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:48 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:00:48 [[ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 ...
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]]
01:00:48 shape: (100, 100)
01:00:48 min: 0 max: 104 pixel type: uint8
01:00:48 Average : 53.9125
01:00:48 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:00:48 kymograph_data (512, 100)
01:00:48 Attaching kymograph.png to image
01:00:48 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:00:48 Tile at zct tile: 2.5 0 0 (5, 5, 100, 100)
01:00:48 [[ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 [ 0 0 0 ... 102 103 104]
01:00:48 ...
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]
01:00:48 [ 5 6 7 ... 102 103 104]]
01:00:48 shape: (100, 100)
01:00:48 min: 0 max: 104 pixel type: uint8
01:00:48 Average : 53.9125
01:00:48 Getting data for T, tile: 0 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 1 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 2 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 3 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 4 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 5 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 6 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 7 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 8 (256.0, 0, 10, 512)
01:00:48 Getting data for T, tile: 9 (256.0, 0, 10, 512)
01:00:48 kymograph_data (512, 100)
01:00:48 Attaching kymograph.png to image
01:00:48 No file downloaded. Project not rated.
01:00:48 New image, Id: 2862
01:00:48 Starting at: http://nginx/web/api/
01:00:48 CSRF token j0ssuAgEdCAk9EkHIkW6qcJqmiqXOu5tOiJLBIrMU8jMvuALmq9RNk7QxdrILYCl
01:00:48 Servers:
01:00:48 -id: 1
01:00:48 name: omero
01:00:48 host: omero
01:00:48 port: 4064
01:00:48 -id: 2
01:00:48 name: testintegration
01:00:48 host: testintegration
01:00:48 port: 14064
01:00:48 eventContext {'sessionId': 2661, 'sessionUuid': '50f29ab8-c32e-4b77-bc0b-91b23df60cdc', 'userId': 2, 'userName': 'training_user', 'groupId': 3, 'groupName': 'training_group', 'isAdmin': False, 'eventId': -1, 'eventType': 'User', 'memberOfGroups': [3, 4, 1], 'leaderOfGroups': []}
01:00:48 Projects:
01:00:48 2 Project 0
01:00:48 3 Project 0
01:00:48 Created Project: 606 API TEST foo
01:00:48 {'data': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Project', '@id': 606, 'omero:details': {'@type': 'TBD#Details', 'owner': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#Experimenter', '@id': 2, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rw----', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': False, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'FirstName': 'training_user', 'MiddleName': '', 'LastName': 'training_user', 'Email': '', 'Institution': '', 'UserName': 'training_user'}, 'group': {'@type': 'http://www.openmicroscopy.org/Schemas/OME/2016-06#ExperimenterGroup', '@id': 3, 'omero:details': {'@type': 'TBD#Details', 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': False, 'canEdit': False, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'training_group'}, 'permissions': {'@type': 'TBD#Permissions', 'perm': 'rwr---', 'canAnnotate': True, 'canDelete': True, 'canEdit': True, 'canLink': True, 'isWorldWrite': False, 'isWorldRead': False, 'isGroupWrite': False, 'isGroupRead': True, 'isGroupAnnotate': False, 'isUserWrite': True, 'isUserRead': True}}, 'Name': 'API TEST foo', 'url:datasets': 'http://nginx/web/api/v0/m/projects/606/datasets/'}}
01:00:48 !! 03/28/24 01:00:48.610 error: communicator not destroyed during global destruction.+ deactivate
01:00:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:00:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:00:48 + export PATH
01:00:48 + unset _OLD_VIRTUAL_PATH
01:00:48 + '[' -n '' ']'
01:00:48 + '[' -n /bin/bash -o -n '' ']'
01:00:48 + hash -r
01:00:48 + '[' -n '' ']'
01:00:48 + unset VIRTUAL_ENV
01:00:48 + '[' '!' '' = nondestructive ']'
01:00:48 + unset -f deactivate
01:00:48 + cd /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/java/src
01:00:48 + javac -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/CreateImage.java training/DeleteData.java training/HowToUseTables.java training/LoadMetadataAdvanced.java training/RawDataAccess.java training/ReadDataAdvanced.java training/ReadData.java training/RenderImages.java training/ROIFolders.java training/ROIs.java training/Setup.java training/Sudo.java training/WriteData.java
01:00:50 Note: Some input files use unchecked or unsafe operations.
01:00:50 Note: Recompile with -Xlint:unchecked for details.
01:00:50 + java -cp '.:/home/omero/workspace/OMERO-training/OMERO.server/lib/client/*' training/Setup
01:00:53 omero.cmd.Delete2Response@4275c20c
01:00:53 omero.cmd.Delete2Response@186978a6
01:00:54 one [class java.lang.String] 1.0 [class java.lang.Double]
01:00:54 two [class java.lang.String] 2.0 [class java.lang.Double]
01:00:54 three [class java.lang.String] 3.0 [class java.lang.Double]
01:00:54 -1.0
01:00:54 0
01:00:54 1
01:00:54 2
01:00:57 0 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1514
01:00:57 1 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:00:57 2 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:00:57 3 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:00:57 4 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
01:00:57 5 |]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] 1014
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01:00:57 Project:102 Project 0
01:00:57 Project:601 Project 1
01:00:57 dataset:657 New Dataset
01:00:57 dataset:651 Dataset 1-1
01:00:57 dataset:652 Dataset 1-2
01:00:57 Project:451 Project 1
01:00:57 dataset:517 new Name 1
01:00:57 dataset:507 New Dataset
01:00:57 dataset:502 Dataset 1-2
01:00:57 dataset:501 Dataset 1-1
01:00:57 dataset:518 new Name 2
01:00:57 Project:2 Project 0
01:00:57 Project:101 Project 1
01:00:57 dataset:107 New Dataset
01:00:57 dataset:117 new Name 1
01:00:57 dataset:102 Dataset 1-2
01:00:57 dataset:101 Dataset 1-1
01:00:57 dataset:118 new Name 2
01:00:57 Project:602 Project 0
01:00:57 Project:502 Project 0
01:00:57 Project:352 Project 0
01:00:57 Project:351 Project 1
01:00:57 dataset:417 new Name 1
01:00:57 dataset:418 new Name 2
01:00:57 dataset:401 Dataset 1-1
01:00:57 dataset:407 New Dataset
01:00:57 dataset:402 Dataset 1-2
01:00:57 Project:401 Project 1
01:00:57 dataset:457 New Dataset
01:00:57 dataset:451 Dataset 1-1
01:00:57 dataset:467 new Name 1
01:00:57 dataset:468 new Name 2
01:00:57 dataset:452 Dataset 1-2
01:00:57 Project:551 Project 1
01:00:57 dataset:618 new Name 2
01:00:57 dataset:607 New Dataset
01:00:57 dataset:602 Dataset 1-2
01:00:57 dataset:617 new Name 1
01:00:57 dataset:601 Dataset 1-1
01:00:57 Project:51 Project 1
01:00:57 dataset:52 Dataset 1-2
01:00:57 dataset:57 New Dataset
01:00:57 dataset:68 new Name 2
01:00:57 dataset:67 new Name 1
01:00:57 dataset:51 Dataset 1-1
01:00:57 Project:302 Project 0
01:00:57 Project:402 Project 0
01:00:57 Project:151 Project 1
01:00:57 dataset:167 new Name 1
01:00:57 dataset:151 Dataset 1-1
01:00:57 dataset:152 Dataset 1-2
01:00:57 dataset:168 new Name 2
01:00:57 dataset:157 New Dataset
01:00:57 Project:1 Project 1
01:00:57 dataset:1 Dataset 1-1
01:00:57 dataset:2 Dataset 1-2
01:00:57 dataset:7 New Dataset
01:00:57 dataset:18 new Name 2
01:00:57 dataset:17 new Name 1
01:00:57 Project:301 Project 1
01:00:57 dataset:367 new Name 1
01:00:57 dataset:357 New Dataset
01:00:57 dataset:368 new Name 2
01:00:57 dataset:351 Dataset 1-1
01:00:57 dataset:352 Dataset 1-2
01:00:57 Project:501 Project 1
01:00:57 dataset:557 New Dataset
01:00:57 dataset:568 new Name 2
01:00:57 dataset:567 new Name 1
01:00:57 dataset:551 Dataset 1-1
01:00:57 dataset:552 Dataset 1-2
01:00:57 Project:52 Project 0
01:00:57 Project:152 Project 0
01:00:57 Project:452 Project 0
01:00:57 Project:552 Project 0
01:00:58 image:2862 New Image
01:00:58 image:2863 newImageFrom2853
01:00:58 image:2852 test.fake
01:00:58 5
01:00:58 10
01:00:58 3
01:00:58 512
01:00:58 512
01:00:58 screen:102 Screen
01:00:58 screen:301 Screen
01:00:58 plate:401 Plate
01:00:58 plate:402 Plate Name 0
01:00:58 screen:451 Screen
01:00:58 plate:551 Plate
01:00:58 plate:552 Plate Name 0
01:00:58 screen:1 Screen
01:00:58 plate:1 Plate
01:00:58 plate:2 Plate Name 0
01:00:58 screen:351 Screen
01:00:58 plate:451 Plate
01:00:58 plate:452 Plate Name 0
01:00:58 screen:252 Screen
01:00:58 screen:501 Screen
01:00:58 plate:602 Plate Name 0
01:00:58 plate:601 Plate
01:00:58 screen:2 Screen
01:00:58 screen:402 Screen
01:00:58 screen:302 Screen
01:00:58 screen:502 Screen
01:00:58 screen:152 Screen
01:00:58 screen:452 Screen
01:00:58 screen:151 Screen
01:00:58 plate:151 Plate
01:00:58 plate:152 Plate Name 0
01:00:58 screen:202 Screen
01:00:58 screen:401 Screen
01:00:58 plate:502 Plate Name 0
01:00:58 plate:501 Plate
01:00:58 screen:52 Screen
01:00:58 screen:352 Screen
01:00:58 screen:51 Screen
01:00:58 plate:51 Plate
01:00:58 plate:52 Plate Name 0
01:00:58 screen:201 Screen
01:00:58 plate:301 Plate
01:00:58 plate:302 Plate Name 0
01:00:58 screen:251 Screen
01:00:58 plate:351 Plate
01:00:58 plate:352 Plate Name 0
01:00:58 screen:101 Screen
01:00:58 plate:102 Plate Name 0
01:00:58 plate:101 Plate
01:00:58 well:701
01:00:58 well:702
01:00:58 well:703
01:00:58 plate:551
01:00:58 plate:53
01:00:58 plate:352
01:00:58 plate:401
01:00:58 plate:103
01:00:58 plate:452
01:00:58 plate:153
01:00:58 plate:552
01:00:58 plate:601
01:00:58 plate:152
01:00:58 plate:3
01:00:58 plate:102
01:00:58 plate:501
01:00:58 plate:402
01:00:58 plate:303
01:00:58 plate:301
01:00:58 plate:553
01:00:58 plate:603
01:00:58 plate:1
01:00:58 plate:503
01:00:58 plate:51
01:00:58 plate:353
01:00:58 plate:151
01:00:58 plate:453
01:00:58 plate:302
01:00:58 plate:602
01:00:58 plate:101
01:00:58 plate:403
01:00:58 plate:2
01:00:58 plate:502
01:00:58 plate:351
01:00:58 plate:451
01:00:58 plate:52
01:00:58
01:00:58 List Datasets:
01:00:58 ID: 8 Name: MyDataset
01:00:58 ID: 9 Name: MyDataset
01:00:58 ID: 10 Name: MyDataset
01:00:58 ID: 14 Name: MyDataset
01:00:58 ID: 15 Name: MyDataset
01:00:58 ID: 16 Name: MyDataset
01:00:58 ID: 58 Name: MyDataset
01:00:58 ID: 59 Name: MyDataset
01:00:58 ID: 60 Name: MyDataset
01:00:58 ID: 64 Name: MyDataset
01:00:58
01:00:58 List Tags:
01:00:58 ID: 16 NS: omero.training.demo
01:00:58 ID: 17 NS: omero.training.demo
01:00:58 ID: 18 NS: omero.training.demo
01:00:58 ID: 66 NS: omero.training.demo
01:00:58 ID: 67 NS: omero.training.demo
01:00:58 ID: 68 NS: omero.training.demo
01:00:58 ID: 116 NS: omero.training.demo
01:00:58 ID: 117 NS: omero.training.demo
01:00:58 ID: 118 NS: omero.training.demo
01:00:58 ID: 166 NS: omero.training.demo
01:00:58 Dataset:554 Orphaned dataset 2
01:00:58 Dataset:358 MyDataset
01:00:58 Dataset:162 New Dataset2
01:00:58 Project:501 Project 1
01:00:58 Dataset:61 New Dataset
01:00:58 Dataset:604 Orphaned dataset 2
01:00:58 Project:51 Project 1
01:00:58 Dataset:654 Orphaned dataset 2
01:00:58 Project:401 Project 1
01:00:58 Dataset:416 MyDataset
01:00:58 Dataset:361 New Dataset
01:00:58 Dataset:109 MyDataset
01:00:58 Dataset:564 MyDataset
01:00:58 Dataset:159 MyDataset
01:00:58 Dataset:514 MyDataset
01:00:58 Dataset:104 Orphaned dataset 2
01:00:58 Dataset:3 Orphaned dataset 1
01:00:58 Dataset:153 Orphaned dataset 1
01:00:58 Project:301 Project 1
01:00:58 Dataset:511 New Dataset
01:00:58 Dataset:510 MyDataset
01:00:58 Dataset:562 New Dataset2
01:00:58 Dataset:610 MyDataset
01:00:58 Dataset:60 MyDataset
01:00:58 Dataset:4 Orphaned dataset 2
01:00:58 Dataset:12 New Dataset2
01:00:58 Dataset:603 Orphaned dataset 1
01:00:58 Dataset:458 MyDataset
01:00:58 Dataset:114 MyDataset
01:00:58 Dataset:515 MyDataset
01:00:58 Dataset:111 New Dataset
01:00:58 Dataset:653 Orphaned dataset 1
01:00:58 Dataset:160 MyDataset
01:00:58 Dataset:62 New Dataset2
01:00:58 Project:351 Project 1
01:00:58 Dataset:15 MyDataset
01:00:58 Dataset:409 MyDataset
01:00:58 Dataset:354 Orphaned dataset 2
01:00:58 Dataset:110 MyDataset
01:00:58 Dataset:558 MyDataset
01:00:58 Dataset:503 Orphaned dataset 1
01:00:58 Dataset:660 MyDataset
01:00:58 Dataset:404 Orphaned dataset 2
01:00:58 Dataset:612 New Dataset2
01:00:58 Dataset:608 MyDataset
01:00:58 Dataset:360 MyDataset
01:00:58 Dataset:460 MyDataset
01:00:58 Dataset:666 MyDataset
01:00:58 Dataset:513 FileAnnotationDelete
01:00:58 Dataset:614 MyDataset
01:00:58 Dataset:103 Orphaned dataset 1
01:00:58 Dataset:459 MyDataset
01:00:58 Dataset:359 MyDataset
01:00:58 Dataset:464 MyDataset
01:00:58 Dataset:161 New Dataset
01:00:58 Dataset:665 MyDataset
01:00:58 Dataset:403 Orphaned dataset 1
01:00:58 Dataset:59 MyDataset
01:00:58 Dataset:164 MyDataset
01:00:58 Dataset:461 New Dataset
01:00:58 Dataset:560 MyDataset
01:00:58 Project:1 Project 1
01:00:58 Dataset:463 FileAnnotationDelete
01:00:58 Dataset:413 FileAnnotationDelete
01:00:58 Dataset:658 MyDataset
01:00:58 Dataset:565 MyDataset
01:00:58 Dataset:58 MyDataset
01:00:58 Dataset:615 MyDataset
01:00:58 Dataset:158 MyDataset
01:00:58 Project:551 Project 1
01:00:58 Dataset:63 FileAnnotationDelete
01:00:58 Dataset:509 MyDataset
01:00:58 Dataset:453 Orphaned dataset 1
01:00:58 Dataset:54 Orphaned dataset 2
01:00:58 Dataset:566 MyDataset
01:00:58 Dataset:113 FileAnnotationDelete
01:00:58 Dataset:663 FileAnnotationDelete
01:00:58 Project:451 Project 1
01:00:58 Dataset:561 New Dataset
01:00:58 Dataset:466 MyDataset
01:00:58 Dataset:454 Orphaned dataset 2
01:00:58 Dataset:112 New Dataset2
01:00:58 Dataset:411 New Dataset
01:00:58 Dataset:53 Orphaned dataset 1
01:00:58 Dataset:154 Orphaned dataset 2
01:00:58 Dataset:616 MyDataset
01:00:58 Dataset:65 MyDataset
01:00:58 Dataset:611 New Dataset
01:00:58 Dataset:465 MyDataset
01:00:58 Dataset:363 FileAnnotationDelete
01:00:58 Dataset:559 MyDataset
01:00:58 Dataset:563 FileAnnotationDelete
01:00:58 Dataset:512 New Dataset2
01:00:58 Dataset:662 New Dataset2
01:00:58 Dataset:516 MyDataset
01:00:58 Dataset:8 MyDataset
01:00:58 Dataset:115 MyDataset
01:00:58 Project:101 Project 1
01:00:58 Dataset:116 MyDataset
01:00:58 Dataset:11 New Dataset
01:00:58 Project:151 Project 1
01:00:58 Dataset:609 MyDataset
01:00:58 Dataset:410 MyDataset
01:00:58 Dataset:613 FileAnnotationDelete
01:00:58 Dataset:165 MyDataset
01:00:58 Dataset:462 New Dataset2
01:00:58 Dataset:353 Orphaned dataset 1
01:00:58 Dataset:661 New Dataset
01:00:58 Dataset:16 MyDataset
01:00:58 Dataset:66 MyDataset
01:00:58 Dataset:553 Orphaned dataset 1
01:00:58 Dataset:664 MyDataset
01:00:58 Dataset:365 MyDataset
01:00:58 Dataset:366 MyDataset
01:00:58 Dataset:659 MyDataset
01:00:58 Dataset:504 Orphaned dataset 2
01:00:58 Dataset:408 MyDataset
01:00:58 Dataset:362 New Dataset2
01:00:58 Dataset:108 MyDataset
01:00:58 Dataset:412 New Dataset2
01:00:58 Dataset:415 MyDataset
01:00:58 Dataset:14 MyDataset
01:00:58 Dataset:508 MyDataset
01:00:58 Dataset:64 MyDataset
01:00:58 Dataset:414 MyDataset
01:00:58 Dataset:163 FileAnnotationDelete
01:00:58 Dataset:166 MyDataset
01:00:58 Dataset:13 FileAnnotationDelete
01:00:58 Dataset:364 MyDataset
01:00:58 Dataset:9 MyDataset
01:00:58 Dataset:10 MyDataset
01:00:58 Project:601 Project 1
01:00:58 Size:0
01:00:58 512 512
01:01:00 9
01:01:00 9
01:01:00 1
01:01:01 Logged in as ladmin_user
01:01:01 Added 'training_user's tag' to dataset MyDataset on behalf of training_user
01:01:01 Added 'ladmin_user's tag' to dataset MyDataset as admin.
01:01:01 Finished: SUCCESS
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